Multiple sequence alignment - TraesCS4B01G150200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4B01G150200
chr4B
100.000
4244
0
0
628
4871
230011787
230007544
0.000000e+00
7838
1
TraesCS4B01G150200
chr4B
100.000
334
0
0
1
334
230012414
230012081
6.930000e-173
617
2
TraesCS4B01G150200
chr4A
93.373
4255
193
48
679
4871
423894626
423890399
0.000000e+00
6213
3
TraesCS4B01G150200
chr4A
93.750
288
13
3
1
288
423895364
423895082
1.250000e-115
427
4
TraesCS4B01G150200
chr4D
95.536
3853
142
15
653
4488
137768159
137764320
0.000000e+00
6135
5
TraesCS4B01G150200
chr4D
94.627
335
9
6
1
334
137768856
137768530
1.210000e-140
510
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4B01G150200
chr4B
230007544
230012414
4870
True
4227.5
7838
100.0000
1
4871
2
chr4B.!!$R1
4870
1
TraesCS4B01G150200
chr4A
423890399
423895364
4965
True
3320.0
6213
93.5615
1
4871
2
chr4A.!!$R1
4870
2
TraesCS4B01G150200
chr4D
137764320
137768856
4536
True
3322.5
6135
95.0815
1
4488
2
chr4D.!!$R1
4487
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
899
968
2.051256
ACTGCGACGCGGATATCG
60.051
61.111
33.96
12.15
38.46
2.92
F
1023
1092
2.119495
GGGAGGGTGAAGCTCAAGATA
58.881
52.381
0.00
0.00
0.00
1.98
F
2731
2808
2.224185
ACACTGTGTTCAGCATAACCGA
60.224
45.455
7.80
0.00
44.77
4.69
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2821
2898
3.192212
GCTGCTTTGCAAAGTTCTCCTAT
59.808
43.478
33.47
0.0
38.41
2.57
R
2936
3013
1.780503
AATAGCAAGGGCCAACATCC
58.219
50.000
6.18
0.0
42.56
3.51
R
4158
4247
0.175760
GCTCGTGCTTGGAGGATGTA
59.824
55.000
1.41
0.0
36.03
2.29
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
157
158
9.395707
GTATAGATACATAAAGGTGTGAACGAG
57.604
37.037
0.00
0.00
33.62
4.18
159
160
6.565234
AGATACATAAAGGTGTGAACGAGAG
58.435
40.000
0.00
0.00
33.62
3.20
648
649
3.917300
TCTCTCCTTCTTGACCCCTATC
58.083
50.000
0.00
0.00
0.00
2.08
649
650
3.533907
TCTCTCCTTCTTGACCCCTATCT
59.466
47.826
0.00
0.00
0.00
1.98
650
651
3.895041
CTCTCCTTCTTGACCCCTATCTC
59.105
52.174
0.00
0.00
0.00
2.75
651
652
3.533907
TCTCCTTCTTGACCCCTATCTCT
59.466
47.826
0.00
0.00
0.00
3.10
899
968
2.051256
ACTGCGACGCGGATATCG
60.051
61.111
33.96
12.15
38.46
2.92
912
981
5.006649
GCGGATATCGTGAATAACAACAG
57.993
43.478
0.00
0.00
41.72
3.16
940
1009
3.341823
CCATCCAGATTCCATCGGATTC
58.658
50.000
7.14
0.00
39.18
2.52
958
1027
8.972458
TCGGATTCTATCATAATTGGTGAAAA
57.028
30.769
0.31
0.00
0.00
2.29
983
1052
7.075741
AGTGTGACGTTAAGACATAATTTTGC
58.924
34.615
0.00
0.00
0.00
3.68
1023
1092
2.119495
GGGAGGGTGAAGCTCAAGATA
58.881
52.381
0.00
0.00
0.00
1.98
1071
1140
3.492656
GGCAGGTGACATATTCTAAGCGA
60.493
47.826
0.00
0.00
0.00
4.93
1104
1173
3.480470
TCTCAAGAAGGCCAAAGAGTTG
58.520
45.455
5.01
0.00
34.25
3.16
1113
1182
3.330701
AGGCCAAAGAGTTGTCCATTCTA
59.669
43.478
5.01
0.00
35.09
2.10
1146
1215
7.326454
TCGATCTCATTCTTCTCATGTTTTCT
58.674
34.615
0.00
0.00
0.00
2.52
1201
1270
5.353111
ACAAAAGGTAATGGTTTTGGTTCG
58.647
37.500
11.16
0.00
44.48
3.95
1207
1276
4.457949
GGTAATGGTTTTGGTTCGTCTGAT
59.542
41.667
0.00
0.00
0.00
2.90
1210
1279
6.642707
AATGGTTTTGGTTCGTCTGATTTA
57.357
33.333
0.00
0.00
0.00
1.40
1214
1283
8.167605
TGGTTTTGGTTCGTCTGATTTAATTA
57.832
30.769
0.00
0.00
0.00
1.40
1252
1321
6.992715
GTCAACAAGCCCATAATATGACTACT
59.007
38.462
1.10
0.00
34.58
2.57
1389
1461
8.392612
GGAAATCGATTTTTCAATGCATTTCAT
58.607
29.630
23.49
0.00
37.34
2.57
1441
1513
2.270352
TTCCGACTGAAGCACCATTT
57.730
45.000
0.00
0.00
0.00
2.32
1514
1590
8.210265
TCTATGCTTTTTCTTTTGGGTGAAATT
58.790
29.630
0.00
0.00
33.04
1.82
1558
1634
9.658799
TGCTTTAGCCATATATCTATCTTGTTC
57.341
33.333
0.00
0.00
41.18
3.18
1578
1654
5.132648
TGTTCTCAGATATGGGGTGCTAATT
59.867
40.000
0.00
0.00
0.00
1.40
1714
1791
8.715190
AAAGGGCTAAAAGGTATTTGAGTTAA
57.285
30.769
0.00
0.00
30.36
2.01
1886
1963
7.992754
AAGTTTGAGAATGAGCTGACTAATT
57.007
32.000
0.00
0.00
28.65
1.40
1978
2055
5.190330
ACTTCTTAGGCTCCGGGTAATTTTA
59.810
40.000
0.00
0.00
0.00
1.52
2175
2252
5.092554
TGGTTTTCGGTATCTAATGCTCA
57.907
39.130
0.00
0.00
0.00
4.26
2535
2612
5.902613
TGAAAATTGAGGAGCATAACAGG
57.097
39.130
0.00
0.00
0.00
4.00
2537
2614
5.774690
TGAAAATTGAGGAGCATAACAGGTT
59.225
36.000
0.00
0.00
0.00
3.50
2573
2650
3.450817
TCTTCAGTTATTGGAGCGATCCA
59.549
43.478
20.59
20.59
38.14
3.41
2664
2741
6.268825
TCGGCATTCATAAGGTAGAGATAC
57.731
41.667
0.00
0.00
0.00
2.24
2697
2774
5.201713
TCTTATTAACTCCAGCCGATCTG
57.798
43.478
0.00
0.00
42.49
2.90
2731
2808
2.224185
ACACTGTGTTCAGCATAACCGA
60.224
45.455
7.80
0.00
44.77
4.69
2803
2880
6.975197
GTCACTCAGAATTCGATCTCATGTTA
59.025
38.462
0.00
0.00
0.00
2.41
2821
2898
5.638530
TGTTATACCCTGTTGGATATGCA
57.361
39.130
0.00
0.00
38.00
3.96
2898
2975
5.066505
AGGTAACAGTTTTCAGCTTCACAAG
59.933
40.000
0.00
0.00
41.41
3.16
3006
3083
0.909623
CTCTGGGGTTAACCGGTGAT
59.090
55.000
18.39
0.00
41.60
3.06
3032
3109
0.531090
CCTTCGTCGTGGTTCCACAA
60.531
55.000
19.90
0.47
36.82
3.33
3036
3113
2.109387
TCGTGGTTCCACAACGGG
59.891
61.111
19.90
5.37
36.82
5.28
3040
3117
4.589675
GGTTCCACAACGGGGGCA
62.590
66.667
0.00
0.00
32.68
5.36
3108
3185
2.298729
GCTCCATCAGAGGTGAGTATCC
59.701
54.545
3.50
0.00
43.46
2.59
3149
3226
4.037089
GGTTGGTCAGGAATTTTGTTACGT
59.963
41.667
0.00
0.00
0.00
3.57
3151
3228
6.368213
GTTGGTCAGGAATTTTGTTACGTAG
58.632
40.000
0.00
0.00
0.00
3.51
3152
3229
4.453136
TGGTCAGGAATTTTGTTACGTAGC
59.547
41.667
2.00
2.00
0.00
3.58
3154
3231
5.390567
GGTCAGGAATTTTGTTACGTAGCAG
60.391
44.000
12.03
0.00
0.00
4.24
3156
3233
5.761234
TCAGGAATTTTGTTACGTAGCAGTT
59.239
36.000
12.03
8.86
0.00
3.16
3157
3234
6.930164
TCAGGAATTTTGTTACGTAGCAGTTA
59.070
34.615
12.03
2.97
0.00
2.24
3523
3610
4.424566
TTCGTCGGCGGCCACTAC
62.425
66.667
20.71
12.50
38.89
2.73
3538
3625
1.144057
CTACGAAATGCCGAGGCCT
59.856
57.895
3.86
3.86
41.09
5.19
3637
3724
4.758674
CCATCTGCCCAAGTGAGTAATATG
59.241
45.833
0.00
0.00
0.00
1.78
3742
3829
6.238211
CGAACGAGCATTTCTTCCAAATATCT
60.238
38.462
0.00
0.00
0.00
1.98
3749
3836
6.020360
GCATTTCTTCCAAATATCTGCGAAAC
60.020
38.462
0.00
0.00
0.00
2.78
3828
3917
8.632679
TCTTTTCAGCTTATTGTTCAGAACATT
58.367
29.630
16.89
15.13
41.79
2.71
3898
3987
2.279918
GTTCGACCACGCCACTGT
60.280
61.111
0.00
0.00
39.58
3.55
3900
3989
3.509137
TTCGACCACGCCACTGTCC
62.509
63.158
0.00
0.00
39.58
4.02
3937
4026
6.962686
TCATGATTTGATGATTCTTTAGCCG
58.037
36.000
0.00
0.00
0.00
5.52
4006
4095
5.997746
CCTTCTCAGTCAGTTTGTTATTCCA
59.002
40.000
0.00
0.00
0.00
3.53
4158
4247
1.494960
TGAAAAAGGTTGGGCAGCTT
58.505
45.000
0.00
0.00
45.60
3.74
4224
4313
3.807622
TCTCAAAATGTTGACGTCCTGAC
59.192
43.478
14.12
9.78
38.88
3.51
4246
4335
2.358322
TTGACAGGGTCTCCAAAACC
57.642
50.000
0.00
0.00
35.97
3.27
4411
4502
1.081094
CTAAAATTTCGGCCGGTCGT
58.919
50.000
29.96
10.67
0.00
4.34
4429
4520
1.328680
CGTCTGCCAGATGTGCATAAC
59.671
52.381
5.73
0.00
38.22
1.89
4441
4532
1.817941
GCATAACGGTCATGCGGGT
60.818
57.895
0.00
0.00
39.43
5.28
4443
4534
0.461163
CATAACGGTCATGCGGGTCA
60.461
55.000
0.00
0.00
0.00
4.02
4459
4550
1.004745
GGTCATGTGATTCCTGGGTGT
59.995
52.381
0.00
0.00
0.00
4.16
4460
4551
2.555227
GGTCATGTGATTCCTGGGTGTT
60.555
50.000
0.00
0.00
0.00
3.32
4467
4558
0.324943
ATTCCTGGGTGTTGTCCTCG
59.675
55.000
0.00
0.00
0.00
4.63
4471
4562
0.038159
CTGGGTGTTGTCCTCGTCTC
60.038
60.000
0.00
0.00
0.00
3.36
4495
4589
0.249955
TACTCCGCGGTAAAAAGGGG
59.750
55.000
27.15
0.00
41.23
4.79
4500
4594
1.022982
CGCGGTAAAAAGGGGAGGAC
61.023
60.000
0.00
0.00
0.00
3.85
4536
4630
2.047560
CCCCCAACCTCGTCGAAC
60.048
66.667
0.00
0.00
0.00
3.95
4544
4638
2.507102
CTCGTCGAACTGCCGCAT
60.507
61.111
0.00
0.00
0.00
4.73
4579
4706
3.969250
ATCGCCGCCACATTTCCGT
62.969
57.895
0.00
0.00
0.00
4.69
4580
4707
4.459331
CGCCGCCACATTTCCGTG
62.459
66.667
0.00
0.00
36.61
4.94
4583
4710
2.480555
CGCCACATTTCCGTGCTC
59.519
61.111
0.00
0.00
35.47
4.26
4587
4714
2.357034
ACATTTCCGTGCTCGCGT
60.357
55.556
5.77
0.00
35.54
6.01
4635
4764
1.807742
GTGTGCCACCGTTTAAGCATA
59.192
47.619
0.00
0.00
37.60
3.14
4659
4788
5.594317
AGAATCTGGTTTGTAGCACTTTGTT
59.406
36.000
0.00
0.00
0.00
2.83
4662
4791
2.493675
TGGTTTGTAGCACTTTGTTGCA
59.506
40.909
0.00
0.00
45.62
4.08
4681
4810
2.356553
TTGCCGTGCTACGACCAC
60.357
61.111
9.75
0.00
46.05
4.16
4682
4811
3.153270
TTGCCGTGCTACGACCACA
62.153
57.895
9.75
1.54
46.05
4.17
4687
4816
0.791983
CGTGCTACGACCACACTACG
60.792
60.000
3.04
0.00
46.05
3.51
4694
4823
2.599578
ACCACACTACGGGCGAGT
60.600
61.111
0.00
0.00
0.00
4.18
4733
4862
3.777925
GTCACAGCACGCGCGATT
61.778
61.111
39.36
18.25
45.49
3.34
4753
4882
2.548587
GAACTCATGGCGCACGTTCG
62.549
60.000
10.83
2.39
0.00
3.95
4761
4890
3.636043
CGCACGTTCGCTGTGGTT
61.636
61.111
0.00
0.00
37.80
3.67
4763
4892
1.063488
GCACGTTCGCTGTGGTTTT
59.937
52.632
0.00
0.00
37.80
2.43
4764
4893
0.928451
GCACGTTCGCTGTGGTTTTC
60.928
55.000
0.00
0.00
37.80
2.29
4785
4914
0.673644
AGCGTACACCATGGCTTGTC
60.674
55.000
13.04
3.63
30.04
3.18
4825
4954
4.147219
ACACTAGACGCAGCAAAAATTC
57.853
40.909
0.00
0.00
0.00
2.17
4826
4955
3.815401
ACACTAGACGCAGCAAAAATTCT
59.185
39.130
0.00
0.00
0.00
2.40
4857
4986
1.463674
AGCACTAAAGGATTTGGCCG
58.536
50.000
0.00
0.00
40.57
6.13
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
13
14
2.959030
AGAAAACCAAGGAGGCTTCAAC
59.041
45.455
0.00
0.00
43.14
3.18
143
144
4.618965
GTTCTACTCTCGTTCACACCTTT
58.381
43.478
0.00
0.00
0.00
3.11
157
158
8.027771
TGTTTATTTTCTCCTCTCGTTCTACTC
58.972
37.037
0.00
0.00
0.00
2.59
159
160
8.530269
TTGTTTATTTTCTCCTCTCGTTCTAC
57.470
34.615
0.00
0.00
0.00
2.59
207
208
6.529829
CAGTTGGAAATGTTTTTCGTTTCTCA
59.470
34.615
10.80
6.24
45.87
3.27
627
628
3.533907
AGATAGGGGTCAAGAAGGAGAGA
59.466
47.826
0.00
0.00
0.00
3.10
628
629
3.895041
GAGATAGGGGTCAAGAAGGAGAG
59.105
52.174
0.00
0.00
0.00
3.20
629
630
3.533907
AGAGATAGGGGTCAAGAAGGAGA
59.466
47.826
0.00
0.00
0.00
3.71
630
631
3.895041
GAGAGATAGGGGTCAAGAAGGAG
59.105
52.174
0.00
0.00
0.00
3.69
631
632
3.533907
AGAGAGATAGGGGTCAAGAAGGA
59.466
47.826
0.00
0.00
0.00
3.36
632
633
3.895041
GAGAGAGATAGGGGTCAAGAAGG
59.105
52.174
0.00
0.00
0.00
3.46
633
634
3.895041
GGAGAGAGATAGGGGTCAAGAAG
59.105
52.174
0.00
0.00
0.00
2.85
634
635
3.533907
AGGAGAGAGATAGGGGTCAAGAA
59.466
47.826
0.00
0.00
0.00
2.52
635
636
3.135279
AGGAGAGAGATAGGGGTCAAGA
58.865
50.000
0.00
0.00
0.00
3.02
636
637
3.496331
GAGGAGAGAGATAGGGGTCAAG
58.504
54.545
0.00
0.00
0.00
3.02
637
638
2.158593
CGAGGAGAGAGATAGGGGTCAA
60.159
54.545
0.00
0.00
0.00
3.18
638
639
1.422024
CGAGGAGAGAGATAGGGGTCA
59.578
57.143
0.00
0.00
0.00
4.02
639
640
1.884928
GCGAGGAGAGAGATAGGGGTC
60.885
61.905
0.00
0.00
0.00
4.46
640
641
0.111639
GCGAGGAGAGAGATAGGGGT
59.888
60.000
0.00
0.00
0.00
4.95
641
642
0.610785
GGCGAGGAGAGAGATAGGGG
60.611
65.000
0.00
0.00
0.00
4.79
642
643
0.610785
GGGCGAGGAGAGAGATAGGG
60.611
65.000
0.00
0.00
0.00
3.53
643
644
0.610785
GGGGCGAGGAGAGAGATAGG
60.611
65.000
0.00
0.00
0.00
2.57
644
645
0.610785
GGGGGCGAGGAGAGAGATAG
60.611
65.000
0.00
0.00
0.00
2.08
645
646
1.068943
AGGGGGCGAGGAGAGAGATA
61.069
60.000
0.00
0.00
0.00
1.98
646
647
1.955458
AAGGGGGCGAGGAGAGAGAT
61.955
60.000
0.00
0.00
0.00
2.75
647
648
2.575455
GAAGGGGGCGAGGAGAGAGA
62.575
65.000
0.00
0.00
0.00
3.10
648
649
2.042435
AAGGGGGCGAGGAGAGAG
60.042
66.667
0.00
0.00
0.00
3.20
649
650
2.042843
GAAGGGGGCGAGGAGAGA
60.043
66.667
0.00
0.00
0.00
3.10
650
651
2.042435
AGAAGGGGGCGAGGAGAG
60.042
66.667
0.00
0.00
0.00
3.20
651
652
2.042843
GAGAAGGGGGCGAGGAGA
60.043
66.667
0.00
0.00
0.00
3.71
899
968
7.122055
TGGATGGGAAATACTGTTGTTATTCAC
59.878
37.037
0.00
0.00
0.00
3.18
910
979
5.052693
TGGAATCTGGATGGGAAATACTG
57.947
43.478
0.00
0.00
0.00
2.74
912
981
4.697352
CGATGGAATCTGGATGGGAAATAC
59.303
45.833
0.00
0.00
42.58
1.89
940
1009
7.904977
CGTCACACTTTTCACCAATTATGATAG
59.095
37.037
0.00
0.00
0.00
2.08
958
1027
7.041372
AGCAAAATTATGTCTTAACGTCACACT
60.041
33.333
0.00
0.00
0.00
3.55
983
1052
2.609459
CCCATGTCGAAGAATTTCCGAG
59.391
50.000
0.00
0.00
39.69
4.63
1023
1092
2.856222
CTGGTGTTCTCCAGCTTCTTT
58.144
47.619
7.78
0.00
46.53
2.52
1071
1140
1.938585
TCTTGAGAATCCCTGACCGT
58.061
50.000
0.00
0.00
0.00
4.83
1104
1173
7.766283
TGAGATCGATATCACATAGAATGGAC
58.234
38.462
18.40
0.00
34.28
4.02
1113
1182
8.120140
TGAGAAGAATGAGATCGATATCACAT
57.880
34.615
23.97
16.03
42.90
3.21
1146
1215
0.714180
TGGTAGGCCTTCCACTAGGA
59.286
55.000
26.14
3.28
43.93
2.94
1210
1279
9.860898
GCTTGTTGACCTAAATCTGAATTAATT
57.139
29.630
0.00
0.00
0.00
1.40
1214
1283
5.185828
GGGCTTGTTGACCTAAATCTGAATT
59.814
40.000
0.00
0.00
41.93
2.17
1361
1432
7.910441
AATGCATTGAAAAATCGATTTCCTT
57.090
28.000
22.93
14.75
38.30
3.36
1363
1434
7.741198
TGAAATGCATTGAAAAATCGATTTCC
58.259
30.769
22.93
17.35
38.30
3.13
1365
1436
8.937884
TGATGAAATGCATTGAAAAATCGATTT
58.062
25.926
17.60
17.60
37.34
2.17
1369
1441
9.205916
GAATTGATGAAATGCATTGAAAAATCG
57.794
29.630
13.82
0.00
37.34
3.34
1408
1480
8.688151
GCTTCAGTCGGAATATAGGACTAATAT
58.312
37.037
3.70
0.00
38.90
1.28
1412
1484
5.241064
GTGCTTCAGTCGGAATATAGGACTA
59.759
44.000
3.70
0.00
38.90
2.59
1413
1485
4.038162
GTGCTTCAGTCGGAATATAGGACT
59.962
45.833
4.29
0.00
41.47
3.85
1421
1493
2.496899
AATGGTGCTTCAGTCGGAAT
57.503
45.000
0.00
0.00
34.32
3.01
1441
1513
8.629158
AGAAGCACAATGACAAACTGTAAATTA
58.371
29.630
0.00
0.00
0.00
1.40
1514
1590
9.405587
GCTAAAGCATTGTTTTGTAATTCTACA
57.594
29.630
8.55
0.00
41.59
2.74
1550
1626
4.445448
GCACCCCATATCTGAGAACAAGAT
60.445
45.833
0.00
0.00
0.00
2.40
1553
1629
2.846206
AGCACCCCATATCTGAGAACAA
59.154
45.455
0.00
0.00
0.00
2.83
1558
1634
9.911788
AAATATAATTAGCACCCCATATCTGAG
57.088
33.333
0.00
0.00
0.00
3.35
1578
1654
9.692749
CTGATTTAACTCTCCGTGCTAAATATA
57.307
33.333
0.00
0.00
0.00
0.86
1587
1663
5.122239
TGCAATTCTGATTTAACTCTCCGTG
59.878
40.000
0.00
0.00
0.00
4.94
1632
1709
2.171659
TCGTCTATGGGGCTGCAAATTA
59.828
45.455
0.50
0.00
0.00
1.40
1714
1791
9.846248
GTTCAGCAGATAAACAGAAAATGTATT
57.154
29.630
0.00
0.00
43.00
1.89
1851
1928
8.454106
GCTCATTCTCAAACTTAATCTGCTAAA
58.546
33.333
0.00
0.00
0.00
1.85
2027
2104
9.490663
CATAGTGAGAAATTTCGTTGGAATTAC
57.509
33.333
12.42
1.07
30.88
1.89
2490
2567
3.194542
TGGTTTCCCTTCAAGTTTGTGTG
59.805
43.478
0.00
0.00
0.00
3.82
2573
2650
9.836179
ATATGGTCTATATTCTCAACCTTCTCT
57.164
33.333
0.00
0.00
0.00
3.10
2606
2683
6.424883
AGATTCTTTGAGAGATTGCTCCATT
58.575
36.000
0.00
0.00
42.30
3.16
2664
2741
6.965607
TGGAGTTAATAAGAAGGTTTAGGGG
58.034
40.000
0.00
0.00
0.00
4.79
2731
2808
5.599999
ACTTCGGATATTGAACAGCTAGT
57.400
39.130
0.00
0.00
0.00
2.57
2803
2880
5.100811
TCCTATGCATATCCAACAGGGTAT
58.899
41.667
6.92
0.00
38.11
2.73
2821
2898
3.192212
GCTGCTTTGCAAAGTTCTCCTAT
59.808
43.478
33.47
0.00
38.41
2.57
2880
2957
4.985413
TGAACTTGTGAAGCTGAAAACTG
58.015
39.130
0.00
0.00
0.00
3.16
2898
2975
5.324784
ACCTGAAACCAAAAGTTCTGAAC
57.675
39.130
12.54
12.54
37.88
3.18
2936
3013
1.780503
AATAGCAAGGGCCAACATCC
58.219
50.000
6.18
0.00
42.56
3.51
3036
3113
4.783621
TGTCCATCGCTGCTGCCC
62.784
66.667
10.24
0.00
35.36
5.36
3040
3117
4.827087
CGGCTGTCCATCGCTGCT
62.827
66.667
0.00
0.00
0.00
4.24
3108
3185
2.681778
ACCCCTGAGCTCAGTCCG
60.682
66.667
35.47
25.32
42.27
4.79
3151
3228
8.391106
ACGATTATGTTTCTTCTTCATAACTGC
58.609
33.333
0.00
0.00
37.04
4.40
3152
3229
9.907576
GACGATTATGTTTCTTCTTCATAACTG
57.092
33.333
0.00
0.00
37.04
3.16
3154
3231
8.879759
TGGACGATTATGTTTCTTCTTCATAAC
58.120
33.333
0.00
0.00
37.04
1.89
3156
3233
7.222031
CGTGGACGATTATGTTTCTTCTTCATA
59.778
37.037
0.00
0.00
43.02
2.15
3157
3234
6.036083
CGTGGACGATTATGTTTCTTCTTCAT
59.964
38.462
0.00
0.00
43.02
2.57
3186
3273
3.567478
CTGCGTGGTGGAGTGCGTA
62.567
63.158
0.00
0.00
0.00
4.42
3232
3319
3.077556
CCCGGGTAGCTCTGCAGT
61.078
66.667
14.18
0.00
0.00
4.40
3318
3405
2.434359
GCTGGTGCTGACGTACCC
60.434
66.667
2.83
0.00
44.39
3.69
3324
3411
3.360340
GCTGGTGCTGGTGCTGAC
61.360
66.667
0.00
0.00
40.48
3.51
3523
3610
3.204827
CCAGGCCTCGGCATTTCG
61.205
66.667
0.00
0.00
44.11
3.46
3637
3724
6.140303
TCAAGATTTTTGCTATCCATGAGC
57.860
37.500
0.00
0.00
40.53
4.26
3742
3829
3.701532
AGGAAAAACAATCGTTTCGCA
57.298
38.095
0.00
0.00
44.65
5.10
3749
3836
7.985634
TTTTCTCAGAAAGGAAAAACAATCG
57.014
32.000
0.00
0.00
38.13
3.34
3828
3917
2.100197
CTGACGGTCAGGGATTCAGTA
58.900
52.381
26.72
0.00
40.71
2.74
3898
3987
2.391678
TCATGAGCTGCTGATGTAGGA
58.608
47.619
24.74
6.56
0.00
2.94
3900
3989
4.814771
TCAAATCATGAGCTGCTGATGTAG
59.185
41.667
24.74
14.65
32.56
2.74
3937
4026
1.356938
CCTTTAGGCTTCGGTTCGTC
58.643
55.000
0.00
0.00
0.00
4.20
4006
4095
7.421382
CCCCTATACACCTTGTTTCATTCCTAT
60.421
40.741
0.00
0.00
0.00
2.57
4107
4196
6.878317
ACTGCAGCATAGTTTACATTAGAGA
58.122
36.000
15.27
0.00
0.00
3.10
4158
4247
0.175760
GCTCGTGCTTGGAGGATGTA
59.824
55.000
1.41
0.00
36.03
2.29
4224
4313
2.558359
GTTTTGGAGACCCTGTCAATGG
59.442
50.000
0.00
0.00
34.60
3.16
4246
4335
9.716507
GTATATTGTAGTACAAACAAATGCTGG
57.283
33.333
19.19
0.00
41.96
4.85
4386
4477
0.528924
GGCCGAAATTTTAGCCGGTT
59.471
50.000
14.47
0.00
43.51
4.44
4411
4502
1.655484
CGTTATGCACATCTGGCAGA
58.345
50.000
21.19
21.19
45.68
4.26
4441
4532
2.108075
ACAACACCCAGGAATCACATGA
59.892
45.455
0.00
0.00
31.40
3.07
4443
4534
2.555227
GGACAACACCCAGGAATCACAT
60.555
50.000
0.00
0.00
0.00
3.21
4446
4537
1.351017
GAGGACAACACCCAGGAATCA
59.649
52.381
0.00
0.00
0.00
2.57
4459
4550
2.740981
GAGTAGTTCGAGACGAGGACAA
59.259
50.000
0.00
0.00
37.14
3.18
4460
4551
2.344950
GAGTAGTTCGAGACGAGGACA
58.655
52.381
0.00
0.00
37.14
4.02
4467
4558
1.062206
CCGCGGAGTAGTTCGAGAC
59.938
63.158
24.07
0.00
0.00
3.36
4471
4562
1.981254
TTTTACCGCGGAGTAGTTCG
58.019
50.000
35.90
0.93
0.00
3.95
4512
4606
3.979497
GAGGTTGGGGGTGGGGTG
61.979
72.222
0.00
0.00
0.00
4.61
4515
4609
4.029809
GACGAGGTTGGGGGTGGG
62.030
72.222
0.00
0.00
0.00
4.61
4561
4688
3.202001
CGGAAATGTGGCGGCGAT
61.202
61.111
12.98
0.00
0.00
4.58
4569
4696
2.096406
CGCGAGCACGGAAATGTG
59.904
61.111
0.00
0.00
42.81
3.21
4587
4714
1.225855
CTAAAAGTGCGGTGAGTGCA
58.774
50.000
0.00
0.00
40.70
4.57
4590
4717
0.605589
GGCCTAAAAGTGCGGTGAGT
60.606
55.000
0.00
0.00
0.00
3.41
4594
4721
2.035155
GGGGCCTAAAAGTGCGGT
59.965
61.111
0.84
0.00
0.00
5.68
4595
4722
3.131478
CGGGGCCTAAAAGTGCGG
61.131
66.667
0.84
0.00
0.00
5.69
4597
4724
2.396157
CGTCGGGGCCTAAAAGTGC
61.396
63.158
0.84
0.00
0.00
4.40
4599
4726
1.004200
CACGTCGGGGCCTAAAAGT
60.004
57.895
0.84
0.00
0.00
2.66
4600
4727
1.004200
ACACGTCGGGGCCTAAAAG
60.004
57.895
0.84
0.00
0.00
2.27
4601
4728
1.301874
CACACGTCGGGGCCTAAAA
60.302
57.895
0.84
0.00
0.00
1.52
4602
4729
2.344500
CACACGTCGGGGCCTAAA
59.656
61.111
0.84
0.00
0.00
1.85
4603
4730
4.382320
GCACACGTCGGGGCCTAA
62.382
66.667
0.84
0.00
0.00
2.69
4635
4764
5.133221
ACAAAGTGCTACAAACCAGATTCT
58.867
37.500
0.00
0.00
0.00
2.40
4676
4805
2.151049
AACTCGCCCGTAGTGTGGTC
62.151
60.000
0.00
0.00
0.00
4.02
4681
4810
0.511221
CAACAAACTCGCCCGTAGTG
59.489
55.000
0.00
0.00
0.00
2.74
4682
4811
1.226030
GCAACAAACTCGCCCGTAGT
61.226
55.000
0.00
0.00
0.00
2.73
4694
4823
2.569354
GGCGACATGGGGCAACAAA
61.569
57.895
11.63
0.00
39.74
2.83
4730
4859
0.247814
CGTGCGCCATGAGTTCAATC
60.248
55.000
4.18
0.00
0.00
2.67
4731
4860
0.955428
ACGTGCGCCATGAGTTCAAT
60.955
50.000
4.18
0.00
0.00
2.57
4733
4862
1.565156
GAACGTGCGCCATGAGTTCA
61.565
55.000
18.64
0.00
40.41
3.18
4753
4882
0.163146
GTACGCTCGAAAACCACAGC
59.837
55.000
0.00
0.00
0.00
4.40
4757
4886
0.104487
TGGTGTACGCTCGAAAACCA
59.896
50.000
6.35
0.00
35.39
3.67
4761
4890
1.017177
GCCATGGTGTACGCTCGAAA
61.017
55.000
14.67
0.00
0.00
3.46
4763
4892
1.884075
AAGCCATGGTGTACGCTCGA
61.884
55.000
14.67
0.00
0.00
4.04
4764
4893
1.447838
AAGCCATGGTGTACGCTCG
60.448
57.895
14.67
0.00
0.00
5.03
4785
4914
0.320374
TTTACTGGAGCACGACAGGG
59.680
55.000
0.00
0.00
39.00
4.45
4825
4954
3.520290
TTAGTGCTATGGTCGGTGAAG
57.480
47.619
0.00
0.00
0.00
3.02
4826
4955
3.369052
CCTTTAGTGCTATGGTCGGTGAA
60.369
47.826
0.00
0.00
0.00
3.18
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.