Multiple sequence alignment - TraesCS4B01G149900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G149900 chr4B 100.000 3261 0 0 1 3261 226514027 226510767 0.000000e+00 6023
1 TraesCS4B01G149900 chr4B 95.785 261 11 0 3001 3261 226930945 226930685 3.890000e-114 422
2 TraesCS4B01G149900 chr4B 100.000 77 0 0 2822 2898 226511104 226511028 3.390000e-30 143
3 TraesCS4B01G149900 chr4B 100.000 77 0 0 2924 3000 226511206 226511130 3.390000e-30 143
4 TraesCS4B01G149900 chr4B 92.632 95 6 1 2290 2383 54567101 54567195 5.680000e-28 135
5 TraesCS4B01G149900 chr4A 97.046 1862 41 2 2 1862 416229548 416231396 0.000000e+00 3121
6 TraesCS4B01G149900 chr4A 97.053 543 7 3 2377 2919 416231929 416232462 0.000000e+00 905
7 TraesCS4B01G149900 chr4A 97.454 432 10 1 1861 2292 416231500 416231930 0.000000e+00 736
8 TraesCS4B01G149900 chr4A 95.802 262 8 3 3001 3261 507568655 507568396 1.400000e-113 420
9 TraesCS4B01G149900 chr4A 95.113 266 10 3 2998 3261 238498579 238498843 1.810000e-112 416
10 TraesCS4B01G149900 chr4A 100.000 77 0 0 2924 3000 416232365 416232441 3.390000e-30 143
11 TraesCS4B01G149900 chr4D 92.551 2027 116 12 286 2295 138406230 138404222 0.000000e+00 2874
12 TraesCS4B01G149900 chr4D 94.812 559 17 2 2377 2924 138404226 138403669 0.000000e+00 861
13 TraesCS4B01G149900 chr4D 91.288 264 22 1 1 264 138406618 138406356 3.090000e-95 359
14 TraesCS4B01G149900 chr4D 98.701 77 1 0 2924 3000 138403770 138403694 1.580000e-28 137
15 TraesCS4B01G149900 chr4D 90.196 102 8 1 2278 2379 437299890 437299989 7.340000e-27 132
16 TraesCS4B01G149900 chr7A 96.565 262 6 3 3001 3261 34304920 34304661 6.460000e-117 431
17 TraesCS4B01G149900 chr7D 96.183 262 8 2 3001 3261 169776599 169776339 8.360000e-116 427
18 TraesCS4B01G149900 chr1A 96.183 262 8 2 3001 3261 551747929 551748189 8.360000e-116 427
19 TraesCS4B01G149900 chr3B 96.169 261 9 1 3001 3261 68638495 68638236 3.010000e-115 425
20 TraesCS4B01G149900 chr2A 96.183 262 7 3 3001 3261 1951974 1952233 3.010000e-115 425
21 TraesCS4B01G149900 chr2A 88.288 111 9 4 2294 2402 90521727 90521835 2.640000e-26 130
22 TraesCS4B01G149900 chr5A 95.455 264 9 3 2999 3261 617245072 617245333 5.030000e-113 418
23 TraesCS4B01G149900 chr6D 93.548 93 6 0 2294 2386 364492554 364492646 4.390000e-29 139
24 TraesCS4B01G149900 chr3D 92.000 100 6 2 2289 2387 219572270 219572172 4.390000e-29 139
25 TraesCS4B01G149900 chr1B 92.708 96 7 0 2290 2385 352885043 352884948 4.390000e-29 139
26 TraesCS4B01G149900 chr1D 88.991 109 8 4 2294 2400 268929920 268929814 7.340000e-27 132
27 TraesCS4B01G149900 chr2D 86.555 119 15 1 2289 2407 178776450 178776567 2.640000e-26 130
28 TraesCS4B01G149900 chr3A 84.733 131 8 10 2294 2416 648101944 648101818 1.590000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G149900 chr4B 226510767 226514027 3260 True 2103.00 6023 100.00000 1 3261 3 chr4B.!!$R2 3260
1 TraesCS4B01G149900 chr4A 416229548 416232462 2914 False 1226.25 3121 97.88825 2 3000 4 chr4A.!!$F2 2998
2 TraesCS4B01G149900 chr4D 138403669 138406618 2949 True 1057.75 2874 94.33800 1 3000 4 chr4D.!!$R1 2999

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 549 0.105964 TGTCCAAGGTGTGAAGGTCG 59.894 55.0 0.0 0.0 0.0 4.79 F
1200 1317 0.251297 TGTTCAGTGGGCATGGAAGG 60.251 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 2189 1.084370 GGTCCTCGCCTGAACAATCG 61.084 60.0 0.0 0.0 0.0 3.34 R
3023 3264 0.035036 TCCGTGTCTCTCTGTCTCGT 59.965 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 158 3.382546 ACTTTCTTTGTGCAATGCAGAGT 59.617 39.130 8.73 0.00 40.08 3.24
190 191 4.716784 AGCAATCTGATGGTGGTTACTCTA 59.283 41.667 0.00 0.00 0.00 2.43
337 442 1.557371 TGTGACGGGAATATCCTTGCA 59.443 47.619 0.00 0.00 36.57 4.08
349 454 7.418254 GGGAATATCCTTGCATGACTCAAAAAT 60.418 37.037 0.00 0.00 36.57 1.82
388 493 4.644685 GCTTGCCTAAATGAATTCCAGGTA 59.355 41.667 2.27 1.52 0.00 3.08
444 549 0.105964 TGTCCAAGGTGTGAAGGTCG 59.894 55.000 0.00 0.00 0.00 4.79
450 555 3.231501 GTGTGAAGGTCGCACGAC 58.768 61.111 14.58 14.58 46.14 4.34
543 648 9.790389 ACGTTCTTTGTTTGATTATTAACACAA 57.210 25.926 0.00 0.00 34.25 3.33
638 743 4.152284 TCTCATGATCTTCTTGCATGCT 57.848 40.909 20.33 0.00 39.30 3.79
732 845 5.647658 TGATCCACGATCCATAATAATTGCC 59.352 40.000 0.00 0.00 38.20 4.52
816 930 6.892456 TGCCTACCAAAATTTATACCATGTGA 59.108 34.615 0.00 0.00 0.00 3.58
821 935 6.437162 ACCAAAATTTATACCATGTGAGCACT 59.563 34.615 1.99 0.00 0.00 4.40
835 949 3.812053 GTGAGCACTTCTTTCATCTGTGT 59.188 43.478 0.00 0.00 0.00 3.72
1026 1140 4.316645 CAGATGCAATGGTATCTCTCCTG 58.683 47.826 0.00 0.00 43.53 3.86
1200 1317 0.251297 TGTTCAGTGGGCATGGAAGG 60.251 55.000 0.00 0.00 0.00 3.46
1304 1421 6.999950 TGTAAGTACCTTTGAGCAATCTGTA 58.000 36.000 0.00 0.00 0.00 2.74
1325 1442 2.734670 TCTTCGTGTGTTACTTGGACG 58.265 47.619 0.00 0.00 0.00 4.79
1327 1444 2.582728 TCGTGTGTTACTTGGACGTT 57.417 45.000 0.00 0.00 0.00 3.99
1380 1497 5.372343 TGTTATGGAAGTACATGCAGGAT 57.628 39.130 4.84 0.00 32.39 3.24
1382 1499 6.894682 TGTTATGGAAGTACATGCAGGATTA 58.105 36.000 4.84 0.00 32.39 1.75
1846 1970 9.823647 CAGTAAATTGATGGTCTTGTAGATAGT 57.176 33.333 0.00 0.00 0.00 2.12
1953 2182 6.378280 GGAAATGTGGTTACAAGGAATGAGAT 59.622 38.462 0.00 0.00 40.84 2.75
1960 2189 5.755861 GGTTACAAGGAATGAGATAGTCTGC 59.244 44.000 0.00 0.00 0.00 4.26
2044 2274 2.808906 AGTATGCCCCTCCTGTTTTC 57.191 50.000 0.00 0.00 0.00 2.29
2049 2279 1.074889 TGCCCCTCCTGTTTTCCTTAC 59.925 52.381 0.00 0.00 0.00 2.34
2050 2280 1.354705 GCCCCTCCTGTTTTCCTTACT 59.645 52.381 0.00 0.00 0.00 2.24
2245 2475 1.270907 ATCCACAGGAGCGATATCCC 58.729 55.000 0.00 0.00 40.53 3.85
2292 2522 6.096564 AGCTGAGGGTAAACTGTACAGTATAC 59.903 42.308 28.13 17.61 41.58 1.47
2295 2525 8.511604 TGAGGGTAAACTGTACAGTATACTAC 57.488 38.462 28.13 22.67 41.58 2.73
2296 2526 8.331740 TGAGGGTAAACTGTACAGTATACTACT 58.668 37.037 28.13 20.28 41.58 2.57
2297 2527 8.744568 AGGGTAAACTGTACAGTATACTACTC 57.255 38.462 28.13 22.91 41.58 2.59
2298 2528 7.777440 AGGGTAAACTGTACAGTATACTACTCC 59.223 40.741 28.13 22.89 41.58 3.85
2299 2529 7.557719 GGGTAAACTGTACAGTATACTACTCCA 59.442 40.741 28.13 0.98 41.58 3.86
2300 2530 9.129532 GGTAAACTGTACAGTATACTACTCCAT 57.870 37.037 28.13 5.79 41.58 3.41
2302 2532 7.820578 AACTGTACAGTATACTACTCCATCC 57.179 40.000 28.13 0.00 41.58 3.51
2303 2533 5.996513 ACTGTACAGTATACTACTCCATCCG 59.003 44.000 26.91 0.00 40.43 4.18
2304 2534 5.933617 TGTACAGTATACTACTCCATCCGT 58.066 41.667 4.74 0.00 36.76 4.69
2305 2535 5.994054 TGTACAGTATACTACTCCATCCGTC 59.006 44.000 4.74 0.00 36.76 4.79
2306 2536 4.396522 ACAGTATACTACTCCATCCGTCC 58.603 47.826 4.74 0.00 36.76 4.79
2307 2537 3.757493 CAGTATACTACTCCATCCGTCCC 59.243 52.174 4.74 0.00 36.76 4.46
2308 2538 3.396946 AGTATACTACTCCATCCGTCCCA 59.603 47.826 2.75 0.00 32.47 4.37
2309 2539 2.832643 TACTACTCCATCCGTCCCAA 57.167 50.000 0.00 0.00 0.00 4.12
2310 2540 1.946984 ACTACTCCATCCGTCCCAAA 58.053 50.000 0.00 0.00 0.00 3.28
2311 2541 2.262637 ACTACTCCATCCGTCCCAAAA 58.737 47.619 0.00 0.00 0.00 2.44
2312 2542 2.844348 ACTACTCCATCCGTCCCAAAAT 59.156 45.455 0.00 0.00 0.00 1.82
2313 2543 4.035112 ACTACTCCATCCGTCCCAAAATA 58.965 43.478 0.00 0.00 0.00 1.40
2314 2544 4.658901 ACTACTCCATCCGTCCCAAAATAT 59.341 41.667 0.00 0.00 0.00 1.28
2315 2545 5.842328 ACTACTCCATCCGTCCCAAAATATA 59.158 40.000 0.00 0.00 0.00 0.86
2316 2546 5.640158 ACTCCATCCGTCCCAAAATATAA 57.360 39.130 0.00 0.00 0.00 0.98
2317 2547 5.621193 ACTCCATCCGTCCCAAAATATAAG 58.379 41.667 0.00 0.00 0.00 1.73
2318 2548 5.368523 ACTCCATCCGTCCCAAAATATAAGA 59.631 40.000 0.00 0.00 0.00 2.10
2319 2549 6.126594 ACTCCATCCGTCCCAAAATATAAGAA 60.127 38.462 0.00 0.00 0.00 2.52
2320 2550 6.059484 TCCATCCGTCCCAAAATATAAGAAC 58.941 40.000 0.00 0.00 0.00 3.01
2321 2551 5.825679 CCATCCGTCCCAAAATATAAGAACA 59.174 40.000 0.00 0.00 0.00 3.18
2322 2552 6.490040 CCATCCGTCCCAAAATATAAGAACAT 59.510 38.462 0.00 0.00 0.00 2.71
2323 2553 7.014230 CCATCCGTCCCAAAATATAAGAACATT 59.986 37.037 0.00 0.00 0.00 2.71
2324 2554 7.948034 TCCGTCCCAAAATATAAGAACATTT 57.052 32.000 0.00 0.00 0.00 2.32
2325 2555 8.356000 TCCGTCCCAAAATATAAGAACATTTT 57.644 30.769 0.00 0.00 35.30 1.82
2326 2556 8.808092 TCCGTCCCAAAATATAAGAACATTTTT 58.192 29.630 0.00 0.00 33.23 1.94
2327 2557 8.868916 CCGTCCCAAAATATAAGAACATTTTTG 58.131 33.333 0.00 0.00 37.14 2.44
2328 2558 9.632807 CGTCCCAAAATATAAGAACATTTTTGA 57.367 29.630 7.74 0.00 38.79 2.69
2337 2567 7.823745 ATAAGAACATTTTTGACTCTGGTGT 57.176 32.000 0.00 0.00 0.00 4.16
2338 2568 8.918202 ATAAGAACATTTTTGACTCTGGTGTA 57.082 30.769 0.00 0.00 0.00 2.90
2339 2569 6.867662 AGAACATTTTTGACTCTGGTGTAG 57.132 37.500 0.00 0.00 0.00 2.74
2340 2570 6.357367 AGAACATTTTTGACTCTGGTGTAGT 58.643 36.000 0.00 0.00 0.00 2.73
2341 2571 6.260936 AGAACATTTTTGACTCTGGTGTAGTG 59.739 38.462 0.00 0.00 0.00 2.74
2342 2572 5.437060 ACATTTTTGACTCTGGTGTAGTGT 58.563 37.500 0.00 0.00 35.92 3.55
2343 2573 5.885912 ACATTTTTGACTCTGGTGTAGTGTT 59.114 36.000 0.00 0.00 33.51 3.32
2344 2574 7.051623 ACATTTTTGACTCTGGTGTAGTGTTA 58.948 34.615 0.00 0.00 33.51 2.41
2345 2575 7.554835 ACATTTTTGACTCTGGTGTAGTGTTAA 59.445 33.333 0.00 0.00 33.51 2.01
2346 2576 7.925043 TTTTTGACTCTGGTGTAGTGTTAAA 57.075 32.000 0.00 0.00 36.91 1.52
2347 2577 7.925043 TTTTGACTCTGGTGTAGTGTTAAAA 57.075 32.000 0.00 0.00 41.71 1.52
2348 2578 7.925043 TTTGACTCTGGTGTAGTGTTAAAAA 57.075 32.000 0.00 0.00 36.25 1.94
2349 2579 6.913873 TGACTCTGGTGTAGTGTTAAAAAC 57.086 37.500 0.00 0.00 33.51 2.43
2350 2580 5.521010 TGACTCTGGTGTAGTGTTAAAAACG 59.479 40.000 0.00 0.00 33.51 3.60
2351 2581 5.422145 ACTCTGGTGTAGTGTTAAAAACGT 58.578 37.500 0.00 0.00 29.15 3.99
2352 2582 5.876460 ACTCTGGTGTAGTGTTAAAAACGTT 59.124 36.000 0.00 0.00 29.15 3.99
2353 2583 6.036408 ACTCTGGTGTAGTGTTAAAAACGTTC 59.964 38.462 0.00 0.00 29.15 3.95
2354 2584 6.108015 TCTGGTGTAGTGTTAAAAACGTTCT 58.892 36.000 0.00 0.00 0.00 3.01
2355 2585 6.594937 TCTGGTGTAGTGTTAAAAACGTTCTT 59.405 34.615 0.00 0.00 0.00 2.52
2356 2586 7.763528 TCTGGTGTAGTGTTAAAAACGTTCTTA 59.236 33.333 0.00 0.00 0.00 2.10
2357 2587 8.436046 TGGTGTAGTGTTAAAAACGTTCTTAT 57.564 30.769 0.00 0.00 0.00 1.73
2358 2588 9.539825 TGGTGTAGTGTTAAAAACGTTCTTATA 57.460 29.630 0.00 0.00 0.00 0.98
2370 2600 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
2371 2601 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
2372 2602 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
2373 2603 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
2374 2604 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
2375 2605 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
2376 2606 5.970640 TCTTATATTTTGGGACAGAGGGAGT 59.029 40.000 0.00 0.00 42.39 3.85
2377 2607 7.136885 TCTTATATTTTGGGACAGAGGGAGTA 58.863 38.462 0.00 0.00 42.39 2.59
2636 2877 9.892130 ATTCTTCGTTCCTACTGAAAGATATTT 57.108 29.630 0.00 0.00 40.43 1.40
2919 3160 7.118535 TCGGAGAATCGAGAAGAATAGATACTG 59.881 40.741 0.00 0.00 34.37 2.74
2920 3161 7.118535 CGGAGAATCGAGAAGAATAGATACTGA 59.881 40.741 0.00 0.00 34.37 3.41
2921 3162 8.234546 GGAGAATCGAGAAGAATAGATACTGAC 58.765 40.741 0.00 0.00 34.37 3.51
2923 3164 9.349713 AGAATCGAGAAGAATAGATACTGACTT 57.650 33.333 0.00 0.00 0.00 3.01
2924 3165 9.393249 GAATCGAGAAGAATAGATACTGACTTG 57.607 37.037 0.00 0.00 0.00 3.16
2925 3166 8.684386 ATCGAGAAGAATAGATACTGACTTGA 57.316 34.615 0.00 0.00 0.00 3.02
2926 3167 8.148807 TCGAGAAGAATAGATACTGACTTGAG 57.851 38.462 0.00 0.00 0.00 3.02
2927 3168 7.227711 TCGAGAAGAATAGATACTGACTTGAGG 59.772 40.741 0.00 0.00 0.00 3.86
2928 3169 7.227711 CGAGAAGAATAGATACTGACTTGAGGA 59.772 40.741 0.00 0.00 0.00 3.71
2929 3170 9.077885 GAGAAGAATAGATACTGACTTGAGGAT 57.922 37.037 0.00 0.00 0.00 3.24
2934 3175 9.921637 GAATAGATACTGACTTGAGGATAAAGG 57.078 37.037 0.00 0.00 0.00 3.11
2935 3176 9.661954 AATAGATACTGACTTGAGGATAAAGGA 57.338 33.333 0.00 0.00 0.00 3.36
2936 3177 9.836179 ATAGATACTGACTTGAGGATAAAGGAT 57.164 33.333 0.00 0.00 0.00 3.24
2938 3179 9.084533 AGATACTGACTTGAGGATAAAGGATAC 57.915 37.037 0.00 0.00 0.00 2.24
2939 3180 8.783660 ATACTGACTTGAGGATAAAGGATACA 57.216 34.615 0.00 0.00 41.41 2.29
2940 3181 7.682787 ACTGACTTGAGGATAAAGGATACAT 57.317 36.000 0.00 0.00 41.41 2.29
2941 3182 8.783660 ACTGACTTGAGGATAAAGGATACATA 57.216 34.615 0.00 0.00 41.41 2.29
2942 3183 9.386122 ACTGACTTGAGGATAAAGGATACATAT 57.614 33.333 0.00 0.00 41.41 1.78
2943 3184 9.868277 CTGACTTGAGGATAAAGGATACATATC 57.132 37.037 0.00 0.00 37.09 1.63
2944 3185 9.607333 TGACTTGAGGATAAAGGATACATATCT 57.393 33.333 0.00 0.00 37.63 1.98
2966 3207 8.945195 ATCTATTCAAATATTCTCCATTGCCA 57.055 30.769 0.00 0.00 0.00 4.92
2967 3208 8.945195 TCTATTCAAATATTCTCCATTGCCAT 57.055 30.769 0.00 0.00 0.00 4.40
2968 3209 9.017509 TCTATTCAAATATTCTCCATTGCCATC 57.982 33.333 0.00 0.00 0.00 3.51
2969 3210 7.850935 ATTCAAATATTCTCCATTGCCATCT 57.149 32.000 0.00 0.00 0.00 2.90
2970 3211 6.644248 TCAAATATTCTCCATTGCCATCTG 57.356 37.500 0.00 0.00 0.00 2.90
2971 3212 5.010314 TCAAATATTCTCCATTGCCATCTGC 59.990 40.000 0.00 0.00 41.77 4.26
2972 3213 2.750141 ATTCTCCATTGCCATCTGCT 57.250 45.000 0.00 0.00 42.00 4.24
2973 3214 2.519771 TTCTCCATTGCCATCTGCTT 57.480 45.000 0.00 0.00 42.00 3.91
2974 3215 1.758936 TCTCCATTGCCATCTGCTTG 58.241 50.000 0.00 0.00 42.00 4.01
2975 3216 0.102481 CTCCATTGCCATCTGCTTGC 59.898 55.000 0.00 0.00 42.00 4.01
2976 3217 1.143183 CCATTGCCATCTGCTTGCC 59.857 57.895 0.00 0.00 42.00 4.52
2977 3218 1.143183 CATTGCCATCTGCTTGCCC 59.857 57.895 0.00 0.00 42.00 5.36
2978 3219 1.001248 ATTGCCATCTGCTTGCCCT 59.999 52.632 0.00 0.00 42.00 5.19
2979 3220 1.327690 ATTGCCATCTGCTTGCCCTG 61.328 55.000 0.00 0.00 42.00 4.45
2980 3221 2.362120 GCCATCTGCTTGCCCTGT 60.362 61.111 0.00 0.00 36.87 4.00
2981 3222 1.077501 GCCATCTGCTTGCCCTGTA 60.078 57.895 0.00 0.00 36.87 2.74
2982 3223 1.099879 GCCATCTGCTTGCCCTGTAG 61.100 60.000 0.00 0.00 36.87 2.74
2983 3224 0.465097 CCATCTGCTTGCCCTGTAGG 60.465 60.000 0.00 0.00 39.47 3.18
2996 3237 2.851195 CCTGTAGGGTTGCACCATATC 58.149 52.381 7.49 2.00 41.02 1.63
2997 3238 2.483876 CTGTAGGGTTGCACCATATCG 58.516 52.381 7.49 0.00 41.02 2.92
2998 3239 1.140052 TGTAGGGTTGCACCATATCGG 59.860 52.381 7.49 0.00 41.02 4.18
2999 3240 1.414919 GTAGGGTTGCACCATATCGGA 59.585 52.381 7.49 0.00 41.02 4.55
3000 3241 1.140312 AGGGTTGCACCATATCGGAT 58.860 50.000 7.49 0.00 41.02 4.18
3001 3242 1.202806 AGGGTTGCACCATATCGGATG 60.203 52.381 0.00 0.00 41.02 3.51
3002 3243 1.476833 GGGTTGCACCATATCGGATGT 60.477 52.381 0.00 0.00 41.02 3.06
3003 3244 2.297701 GGTTGCACCATATCGGATGTT 58.702 47.619 0.00 0.00 38.42 2.71
3004 3245 3.472652 GGTTGCACCATATCGGATGTTA 58.527 45.455 0.00 0.00 38.42 2.41
3005 3246 3.498397 GGTTGCACCATATCGGATGTTAG 59.502 47.826 0.00 0.00 38.42 2.34
3006 3247 4.377021 GTTGCACCATATCGGATGTTAGA 58.623 43.478 0.00 0.00 38.63 2.10
3007 3248 4.890158 TGCACCATATCGGATGTTAGAT 57.110 40.909 0.00 0.00 38.63 1.98
3008 3249 5.993748 TGCACCATATCGGATGTTAGATA 57.006 39.130 0.00 0.00 38.63 1.98
3009 3250 6.353404 TGCACCATATCGGATGTTAGATAA 57.647 37.500 0.00 0.00 38.63 1.75
3010 3251 6.946340 TGCACCATATCGGATGTTAGATAAT 58.054 36.000 0.00 0.00 38.63 1.28
3011 3252 8.073467 TGCACCATATCGGATGTTAGATAATA 57.927 34.615 0.00 0.00 38.63 0.98
3012 3253 8.536175 TGCACCATATCGGATGTTAGATAATAA 58.464 33.333 0.00 0.00 38.63 1.40
3013 3254 8.818057 GCACCATATCGGATGTTAGATAATAAC 58.182 37.037 0.00 0.00 38.63 1.89
3014 3255 9.020813 CACCATATCGGATGTTAGATAATAACG 57.979 37.037 0.00 0.00 38.63 3.18
3015 3256 8.963725 ACCATATCGGATGTTAGATAATAACGA 58.036 33.333 0.00 0.00 38.63 3.85
3016 3257 9.452065 CCATATCGGATGTTAGATAATAACGAG 57.548 37.037 0.00 0.00 36.56 4.18
3033 3274 7.972623 ATAACGAGAAATAAACGAGACAGAG 57.027 36.000 0.00 0.00 0.00 3.35
3034 3275 5.624344 ACGAGAAATAAACGAGACAGAGA 57.376 39.130 0.00 0.00 0.00 3.10
3035 3276 5.632959 ACGAGAAATAAACGAGACAGAGAG 58.367 41.667 0.00 0.00 0.00 3.20
3036 3277 5.411977 ACGAGAAATAAACGAGACAGAGAGA 59.588 40.000 0.00 0.00 0.00 3.10
3037 3278 5.735427 CGAGAAATAAACGAGACAGAGAGAC 59.265 44.000 0.00 0.00 0.00 3.36
3038 3279 6.576662 AGAAATAAACGAGACAGAGAGACA 57.423 37.500 0.00 0.00 0.00 3.41
3039 3280 6.383415 AGAAATAAACGAGACAGAGAGACAC 58.617 40.000 0.00 0.00 0.00 3.67
3040 3281 2.690173 AAACGAGACAGAGAGACACG 57.310 50.000 0.00 0.00 33.10 4.49
3041 3282 0.875728 AACGAGACAGAGAGACACGG 59.124 55.000 0.00 0.00 31.44 4.94
3042 3283 0.035036 ACGAGACAGAGAGACACGGA 59.965 55.000 0.00 0.00 31.44 4.69
3043 3284 1.339247 ACGAGACAGAGAGACACGGAT 60.339 52.381 0.00 0.00 31.44 4.18
3044 3285 1.740585 CGAGACAGAGAGACACGGATT 59.259 52.381 0.00 0.00 0.00 3.01
3045 3286 2.162608 CGAGACAGAGAGACACGGATTT 59.837 50.000 0.00 0.00 0.00 2.17
3046 3287 3.366476 CGAGACAGAGAGACACGGATTTT 60.366 47.826 0.00 0.00 0.00 1.82
3047 3288 4.561105 GAGACAGAGAGACACGGATTTTT 58.439 43.478 0.00 0.00 0.00 1.94
3048 3289 5.619309 CGAGACAGAGAGACACGGATTTTTA 60.619 44.000 0.00 0.00 0.00 1.52
3049 3290 6.287589 AGACAGAGAGACACGGATTTTTAT 57.712 37.500 0.00 0.00 0.00 1.40
3050 3291 6.102663 AGACAGAGAGACACGGATTTTTATG 58.897 40.000 0.00 0.00 0.00 1.90
3051 3292 5.794894 ACAGAGAGACACGGATTTTTATGT 58.205 37.500 0.00 0.00 0.00 2.29
3052 3293 5.639506 ACAGAGAGACACGGATTTTTATGTG 59.360 40.000 0.00 0.00 38.28 3.21
3053 3294 5.869344 CAGAGAGACACGGATTTTTATGTGA 59.131 40.000 0.00 0.00 36.25 3.58
3054 3295 6.368791 CAGAGAGACACGGATTTTTATGTGAA 59.631 38.462 0.00 0.00 36.25 3.18
3055 3296 6.934645 AGAGAGACACGGATTTTTATGTGAAA 59.065 34.615 0.00 0.00 36.25 2.69
3056 3297 7.444183 AGAGAGACACGGATTTTTATGTGAAAA 59.556 33.333 0.00 0.00 36.25 2.29
3057 3298 7.360361 AGAGACACGGATTTTTATGTGAAAAC 58.640 34.615 0.00 0.00 36.25 2.43
3058 3299 6.443792 AGACACGGATTTTTATGTGAAAACC 58.556 36.000 0.00 0.00 36.25 3.27
3059 3300 5.534407 ACACGGATTTTTATGTGAAAACCC 58.466 37.500 0.00 0.00 36.25 4.11
3060 3301 5.303333 ACACGGATTTTTATGTGAAAACCCT 59.697 36.000 0.00 0.00 31.14 4.34
3061 3302 6.183360 ACACGGATTTTTATGTGAAAACCCTT 60.183 34.615 0.00 0.00 31.14 3.95
3062 3303 6.145371 CACGGATTTTTATGTGAAAACCCTTG 59.855 38.462 0.00 0.00 31.14 3.61
3063 3304 5.120053 CGGATTTTTATGTGAAAACCCTTGC 59.880 40.000 0.00 0.00 31.14 4.01
3064 3305 5.120053 GGATTTTTATGTGAAAACCCTTGCG 59.880 40.000 0.00 0.00 30.75 4.85
3065 3306 3.651803 TTTATGTGAAAACCCTTGCGG 57.348 42.857 0.00 0.00 37.81 5.69
3077 3318 1.076332 CCTTGCGGGAGAAAACTACG 58.924 55.000 0.00 0.00 37.23 3.51
3078 3319 1.076332 CTTGCGGGAGAAAACTACGG 58.924 55.000 0.00 0.00 0.00 4.02
3079 3320 0.680618 TTGCGGGAGAAAACTACGGA 59.319 50.000 0.00 0.00 0.00 4.69
3080 3321 0.037975 TGCGGGAGAAAACTACGGAC 60.038 55.000 0.00 0.00 0.00 4.79
3081 3322 1.074872 GCGGGAGAAAACTACGGACG 61.075 60.000 0.00 0.00 0.00 4.79
3082 3323 1.074872 CGGGAGAAAACTACGGACGC 61.075 60.000 0.00 0.00 0.00 5.19
3083 3324 0.037975 GGGAGAAAACTACGGACGCA 60.038 55.000 0.00 0.00 0.00 5.24
3084 3325 1.066136 GGAGAAAACTACGGACGCAC 58.934 55.000 0.00 0.00 0.00 5.34
3085 3326 0.706729 GAGAAAACTACGGACGCACG 59.293 55.000 0.00 0.00 40.31 5.34
3086 3327 0.311790 AGAAAACTACGGACGCACGA 59.688 50.000 6.34 0.00 37.61 4.35
3087 3328 1.130955 GAAAACTACGGACGCACGAA 58.869 50.000 6.34 0.00 37.61 3.85
3088 3329 1.123756 GAAAACTACGGACGCACGAAG 59.876 52.381 6.34 0.00 37.61 3.79
3089 3330 0.665369 AAACTACGGACGCACGAAGG 60.665 55.000 6.34 0.00 37.61 3.46
3090 3331 2.879462 CTACGGACGCACGAAGGC 60.879 66.667 6.34 0.00 37.61 4.35
3098 3339 2.202349 GCACGAAGGCGCAATCAC 60.202 61.111 10.83 0.00 42.48 3.06
3099 3340 2.680913 GCACGAAGGCGCAATCACT 61.681 57.895 10.83 0.00 42.48 3.41
3100 3341 1.358725 GCACGAAGGCGCAATCACTA 61.359 55.000 10.83 0.00 42.48 2.74
3101 3342 1.290203 CACGAAGGCGCAATCACTAT 58.710 50.000 10.83 0.00 42.48 2.12
3102 3343 1.004610 CACGAAGGCGCAATCACTATG 60.005 52.381 10.83 0.00 42.48 2.23
3103 3344 1.134818 ACGAAGGCGCAATCACTATGA 60.135 47.619 10.83 0.00 42.48 2.15
3104 3345 2.138320 CGAAGGCGCAATCACTATGAT 58.862 47.619 10.83 0.00 39.09 2.45
3105 3346 2.096565 CGAAGGCGCAATCACTATGATG 60.097 50.000 10.83 0.00 37.15 3.07
3106 3347 1.888215 AGGCGCAATCACTATGATGG 58.112 50.000 10.83 0.00 37.15 3.51
3107 3348 1.417517 AGGCGCAATCACTATGATGGA 59.582 47.619 10.83 0.00 37.15 3.41
3108 3349 1.802960 GGCGCAATCACTATGATGGAG 59.197 52.381 10.83 0.00 37.15 3.86
3109 3350 1.802960 GCGCAATCACTATGATGGAGG 59.197 52.381 0.30 0.00 37.15 4.30
3110 3351 2.548707 GCGCAATCACTATGATGGAGGA 60.549 50.000 0.30 0.00 37.15 3.71
3111 3352 3.324117 CGCAATCACTATGATGGAGGAG 58.676 50.000 0.00 0.00 37.15 3.69
3112 3353 3.244009 CGCAATCACTATGATGGAGGAGT 60.244 47.826 0.00 0.00 37.15 3.85
3113 3354 4.021981 CGCAATCACTATGATGGAGGAGTA 60.022 45.833 0.00 0.00 37.15 2.59
3114 3355 5.337089 CGCAATCACTATGATGGAGGAGTAT 60.337 44.000 0.00 0.00 37.15 2.12
3115 3356 6.471146 GCAATCACTATGATGGAGGAGTATT 58.529 40.000 0.00 0.00 37.15 1.89
3116 3357 7.577616 CGCAATCACTATGATGGAGGAGTATTA 60.578 40.741 0.00 0.00 37.15 0.98
3117 3358 7.547370 GCAATCACTATGATGGAGGAGTATTAC 59.453 40.741 0.00 0.00 37.15 1.89
3118 3359 8.588472 CAATCACTATGATGGAGGAGTATTACA 58.412 37.037 0.00 0.00 37.15 2.41
3119 3360 8.727100 ATCACTATGATGGAGGAGTATTACAA 57.273 34.615 0.00 0.00 35.43 2.41
3120 3361 8.547481 TCACTATGATGGAGGAGTATTACAAA 57.453 34.615 0.00 0.00 0.00 2.83
3121 3362 8.421784 TCACTATGATGGAGGAGTATTACAAAC 58.578 37.037 0.00 0.00 0.00 2.93
3122 3363 7.382488 CACTATGATGGAGGAGTATTACAAACG 59.618 40.741 0.00 0.00 0.00 3.60
3123 3364 4.439057 TGATGGAGGAGTATTACAAACGC 58.561 43.478 0.00 0.00 0.00 4.84
3124 3365 2.883574 TGGAGGAGTATTACAAACGCG 58.116 47.619 3.53 3.53 0.00 6.01
3125 3366 2.492881 TGGAGGAGTATTACAAACGCGA 59.507 45.455 15.93 0.00 0.00 5.87
3126 3367 3.114065 GGAGGAGTATTACAAACGCGAG 58.886 50.000 15.93 4.52 0.00 5.03
3127 3368 3.181493 GGAGGAGTATTACAAACGCGAGA 60.181 47.826 15.93 0.00 0.00 4.04
3128 3369 3.767278 AGGAGTATTACAAACGCGAGAC 58.233 45.455 15.93 0.00 0.00 3.36
3146 3387 0.879765 ACGACAGACCGTCTTAGGTG 59.120 55.000 0.00 0.00 46.09 4.00
3147 3388 0.456312 CGACAGACCGTCTTAGGTGC 60.456 60.000 0.00 0.00 46.09 5.01
3148 3389 0.456312 GACAGACCGTCTTAGGTGCG 60.456 60.000 0.00 0.00 46.09 5.34
3149 3390 0.892358 ACAGACCGTCTTAGGTGCGA 60.892 55.000 0.00 0.00 46.09 5.10
3150 3391 0.456312 CAGACCGTCTTAGGTGCGAC 60.456 60.000 0.00 0.00 46.09 5.19
3151 3392 0.608582 AGACCGTCTTAGGTGCGACT 60.609 55.000 0.00 0.00 46.09 4.18
3152 3393 1.089920 GACCGTCTTAGGTGCGACTA 58.910 55.000 0.00 0.00 46.09 2.59
3153 3394 0.807496 ACCGTCTTAGGTGCGACTAC 59.193 55.000 0.00 0.00 44.07 2.73
3154 3395 0.806868 CCGTCTTAGGTGCGACTACA 59.193 55.000 0.00 0.00 0.00 2.74
3155 3396 1.404391 CCGTCTTAGGTGCGACTACAT 59.596 52.381 0.00 0.00 0.00 2.29
3156 3397 2.451132 CGTCTTAGGTGCGACTACATG 58.549 52.381 0.00 0.00 0.00 3.21
3157 3398 2.794981 CGTCTTAGGTGCGACTACATGG 60.795 54.545 0.00 0.00 0.00 3.66
3158 3399 1.754803 TCTTAGGTGCGACTACATGGG 59.245 52.381 0.00 0.00 0.00 4.00
3159 3400 0.828022 TTAGGTGCGACTACATGGGG 59.172 55.000 0.00 0.00 0.00 4.96
3160 3401 0.324923 TAGGTGCGACTACATGGGGT 60.325 55.000 0.00 0.00 0.00 4.95
3161 3402 0.324923 AGGTGCGACTACATGGGGTA 60.325 55.000 0.00 0.00 0.00 3.69
3162 3403 0.756903 GGTGCGACTACATGGGGTAT 59.243 55.000 0.00 0.00 0.00 2.73
3163 3404 1.965643 GGTGCGACTACATGGGGTATA 59.034 52.381 0.00 0.00 0.00 1.47
3164 3405 2.565834 GGTGCGACTACATGGGGTATAT 59.434 50.000 0.00 0.00 0.00 0.86
3165 3406 3.765511 GGTGCGACTACATGGGGTATATA 59.234 47.826 0.00 0.00 0.00 0.86
3166 3407 4.404715 GGTGCGACTACATGGGGTATATAT 59.595 45.833 0.00 0.00 0.00 0.86
3167 3408 5.348986 GTGCGACTACATGGGGTATATATG 58.651 45.833 0.00 0.00 0.00 1.78
3168 3409 5.126545 GTGCGACTACATGGGGTATATATGA 59.873 44.000 0.00 0.00 0.00 2.15
3169 3410 5.359860 TGCGACTACATGGGGTATATATGAG 59.640 44.000 0.00 0.00 0.00 2.90
3170 3411 5.221263 GCGACTACATGGGGTATATATGAGG 60.221 48.000 0.00 0.00 0.00 3.86
3171 3412 5.302059 CGACTACATGGGGTATATATGAGGG 59.698 48.000 0.00 0.00 0.00 4.30
3172 3413 5.538877 ACTACATGGGGTATATATGAGGGG 58.461 45.833 0.00 0.00 0.00 4.79
3173 3414 3.123273 ACATGGGGTATATATGAGGGGC 58.877 50.000 0.00 0.00 0.00 5.80
3174 3415 3.122480 CATGGGGTATATATGAGGGGCA 58.878 50.000 0.00 0.00 0.00 5.36
3175 3416 3.299591 TGGGGTATATATGAGGGGCAA 57.700 47.619 0.00 0.00 0.00 4.52
3176 3417 2.916934 TGGGGTATATATGAGGGGCAAC 59.083 50.000 0.00 0.00 0.00 4.17
3177 3418 2.916934 GGGGTATATATGAGGGGCAACA 59.083 50.000 0.00 0.00 39.74 3.33
3178 3419 3.308188 GGGGTATATATGAGGGGCAACAC 60.308 52.174 0.00 0.00 44.66 3.32
3187 3428 3.478540 GGGGCAACACATAGGAGTC 57.521 57.895 0.00 0.00 42.67 3.36
3188 3429 0.107165 GGGGCAACACATAGGAGTCC 60.107 60.000 0.00 0.00 42.67 3.85
3189 3430 0.912486 GGGCAACACATAGGAGTCCT 59.088 55.000 17.78 17.78 36.28 3.85
3190 3431 1.282157 GGGCAACACATAGGAGTCCTT 59.718 52.381 19.06 2.29 34.21 3.36
3191 3432 2.359900 GGCAACACATAGGAGTCCTTG 58.640 52.381 19.06 16.90 34.61 3.61
3192 3433 2.290323 GGCAACACATAGGAGTCCTTGT 60.290 50.000 19.06 17.53 34.61 3.16
3193 3434 3.055385 GGCAACACATAGGAGTCCTTGTA 60.055 47.826 19.06 0.00 34.61 2.41
3194 3435 4.184629 GCAACACATAGGAGTCCTTGTAG 58.815 47.826 19.06 15.97 34.61 2.74
3195 3436 4.759782 CAACACATAGGAGTCCTTGTAGG 58.240 47.826 19.06 12.20 34.61 3.18
3196 3437 4.332683 ACACATAGGAGTCCTTGTAGGA 57.667 45.455 19.06 0.00 43.43 2.94
3224 3465 3.664930 GAGTTGTACTCGTACGCGT 57.335 52.632 19.17 19.17 35.28 6.01
3225 3466 1.518286 GAGTTGTACTCGTACGCGTC 58.482 55.000 18.63 6.85 35.28 5.19
3226 3467 0.179240 AGTTGTACTCGTACGCGTCG 60.179 55.000 18.63 19.59 38.85 5.12
3227 3468 1.122419 GTTGTACTCGTACGCGTCGG 61.122 60.000 18.63 9.43 38.85 4.79
3228 3469 1.565156 TTGTACTCGTACGCGTCGGT 61.565 55.000 18.63 19.29 38.85 4.69
3229 3470 0.734597 TGTACTCGTACGCGTCGGTA 60.735 55.000 18.63 18.38 38.85 4.02
3230 3471 0.314339 GTACTCGTACGCGTCGGTAC 60.314 60.000 18.63 23.99 39.47 3.34
3231 3472 1.418342 TACTCGTACGCGTCGGTACC 61.418 60.000 18.63 0.16 39.65 3.34
3232 3473 2.739704 CTCGTACGCGTCGGTACCA 61.740 63.158 18.63 0.00 39.65 3.25
3233 3474 2.175566 CGTACGCGTCGGTACCAA 59.824 61.111 18.63 0.00 39.65 3.67
3234 3475 2.145905 CGTACGCGTCGGTACCAAC 61.146 63.158 18.63 4.42 39.65 3.77
3235 3476 2.145905 GTACGCGTCGGTACCAACG 61.146 63.158 21.11 21.11 41.68 4.10
3239 3480 3.627714 CGTCGGTACCAACGCAAA 58.372 55.556 13.28 0.00 31.48 3.68
3240 3481 1.933005 CGTCGGTACCAACGCAAAA 59.067 52.632 13.28 0.00 31.48 2.44
3241 3482 0.111001 CGTCGGTACCAACGCAAAAG 60.111 55.000 13.28 0.00 31.48 2.27
3242 3483 0.385098 GTCGGTACCAACGCAAAAGC 60.385 55.000 13.54 0.00 0.00 3.51
3243 3484 1.081708 CGGTACCAACGCAAAAGCC 60.082 57.895 13.54 0.00 0.00 4.35
3244 3485 1.287815 GGTACCAACGCAAAAGCCC 59.712 57.895 7.15 0.00 0.00 5.19
3245 3486 1.457009 GGTACCAACGCAAAAGCCCA 61.457 55.000 7.15 0.00 0.00 5.36
3246 3487 0.318360 GTACCAACGCAAAAGCCCAC 60.318 55.000 0.00 0.00 0.00 4.61
3247 3488 0.752009 TACCAACGCAAAAGCCCACA 60.752 50.000 0.00 0.00 0.00 4.17
3248 3489 1.591327 CCAACGCAAAAGCCCACAC 60.591 57.895 0.00 0.00 0.00 3.82
3249 3490 1.591327 CAACGCAAAAGCCCACACC 60.591 57.895 0.00 0.00 0.00 4.16
3250 3491 3.132481 AACGCAAAAGCCCACACCG 62.132 57.895 0.00 0.00 0.00 4.94
3251 3492 3.591835 CGCAAAAGCCCACACCGT 61.592 61.111 0.00 0.00 0.00 4.83
3252 3493 2.255172 CGCAAAAGCCCACACCGTA 61.255 57.895 0.00 0.00 0.00 4.02
3253 3494 1.582610 CGCAAAAGCCCACACCGTAT 61.583 55.000 0.00 0.00 0.00 3.06
3254 3495 0.109319 GCAAAAGCCCACACCGTATG 60.109 55.000 0.00 0.00 0.00 2.39
3255 3496 1.243902 CAAAAGCCCACACCGTATGT 58.756 50.000 0.00 0.00 44.81 2.29
3256 3497 2.428491 CAAAAGCCCACACCGTATGTA 58.572 47.619 0.00 0.00 40.64 2.29
3257 3498 2.103537 AAAGCCCACACCGTATGTAC 57.896 50.000 0.00 0.00 40.64 2.90
3258 3499 1.272807 AAGCCCACACCGTATGTACT 58.727 50.000 0.00 0.00 40.64 2.73
3259 3500 2.148446 AGCCCACACCGTATGTACTA 57.852 50.000 0.00 0.00 40.64 1.82
3260 3501 1.753073 AGCCCACACCGTATGTACTAC 59.247 52.381 0.00 0.00 40.64 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 0.036164 ATGTCCAGCAACGGTAGCAA 59.964 50.000 0.00 0.00 0.00 3.91
157 158 4.204799 CCATCAGATTGCTTCATCCTGAA 58.795 43.478 0.00 0.00 37.41 3.02
349 454 4.588528 AGGCAAGCCAAGTCATAAAAAGAA 59.411 37.500 14.40 0.00 38.92 2.52
388 493 5.642165 AGTGAGGTTAGGTCGGATGTATAT 58.358 41.667 0.00 0.00 0.00 0.86
444 549 1.375013 ATGGGTTGTACCGTCGTGC 60.375 57.895 0.00 0.00 39.83 5.34
450 555 1.548719 TCTGTCTCATGGGTTGTACCG 59.451 52.381 0.00 0.00 39.83 4.02
732 845 4.331968 TGTGTTATTGGGTGCCTCTAAAG 58.668 43.478 0.00 0.00 0.00 1.85
748 861 6.717540 ACCAGCAATTATTTGTACCTGTGTTA 59.282 34.615 0.00 0.00 35.17 2.41
816 930 4.063689 CAGACACAGATGAAAGAAGTGCT 58.936 43.478 0.00 0.00 33.69 4.40
821 935 5.928839 GCTAGAACAGACACAGATGAAAGAA 59.071 40.000 0.00 0.00 0.00 2.52
835 949 7.336176 TGTCTAGAAACTATTCGCTAGAACAGA 59.664 37.037 0.00 0.00 40.63 3.41
1026 1140 3.252974 AGAACATTGATCGGTGGAGAC 57.747 47.619 0.00 0.00 0.00 3.36
1087 1201 9.082313 ACATGAGAAAGAAAACATAAGGTGAAT 57.918 29.630 0.00 0.00 0.00 2.57
1101 1215 3.149196 GGACCTGCAACATGAGAAAGAA 58.851 45.455 0.00 0.00 0.00 2.52
1102 1216 2.106338 TGGACCTGCAACATGAGAAAGA 59.894 45.455 0.00 0.00 0.00 2.52
1103 1217 2.227388 GTGGACCTGCAACATGAGAAAG 59.773 50.000 0.00 0.00 0.00 2.62
1200 1317 6.942576 ACATTTATGGGTAGTCTTCCATATGC 59.057 38.462 12.59 0.00 43.21 3.14
1304 1421 3.243636 ACGTCCAAGTAACACACGAAGAT 60.244 43.478 0.00 0.00 34.55 2.40
1325 1442 6.663944 AAGTACGCAGAATTGAGGATAAAC 57.336 37.500 0.00 0.00 0.00 2.01
1327 1444 6.535150 CAGAAAGTACGCAGAATTGAGGATAA 59.465 38.462 0.00 0.00 0.00 1.75
1382 1499 7.226523 GGCATGGTTTGAATTAAACTGAAAACT 59.773 33.333 0.79 0.00 46.26 2.66
1953 2182 1.735700 CGCCTGAACAATCGCAGACTA 60.736 52.381 0.00 0.00 42.51 2.59
1960 2189 1.084370 GGTCCTCGCCTGAACAATCG 61.084 60.000 0.00 0.00 0.00 3.34
1996 2225 2.154567 AATGTGAGAGGCATGCCAAT 57.845 45.000 37.18 25.27 38.92 3.16
2000 2229 2.029649 ACAACAAATGTGAGAGGCATGC 60.030 45.455 9.90 9.90 41.93 4.06
2044 2274 6.377327 TTCAAGCAAGAACAAAGAGTAAGG 57.623 37.500 0.00 0.00 0.00 2.69
2049 2279 7.178741 CGATCTATTCAAGCAAGAACAAAGAG 58.821 38.462 0.00 0.00 0.00 2.85
2050 2280 6.092670 CCGATCTATTCAAGCAAGAACAAAGA 59.907 38.462 0.00 0.00 0.00 2.52
2245 2475 5.927115 GCTAAAGGGTTAGATAGATTCCACG 59.073 44.000 0.00 0.00 39.36 4.94
2292 2522 3.560636 ATTTTGGGACGGATGGAGTAG 57.439 47.619 0.00 0.00 0.00 2.57
2295 2525 5.865085 TCTTATATTTTGGGACGGATGGAG 58.135 41.667 0.00 0.00 0.00 3.86
2296 2526 5.897851 TCTTATATTTTGGGACGGATGGA 57.102 39.130 0.00 0.00 0.00 3.41
2297 2527 5.825679 TGTTCTTATATTTTGGGACGGATGG 59.174 40.000 0.00 0.00 0.00 3.51
2298 2528 6.935741 TGTTCTTATATTTTGGGACGGATG 57.064 37.500 0.00 0.00 0.00 3.51
2299 2529 8.533569 AAATGTTCTTATATTTTGGGACGGAT 57.466 30.769 0.00 0.00 0.00 4.18
2300 2530 7.948034 AAATGTTCTTATATTTTGGGACGGA 57.052 32.000 0.00 0.00 0.00 4.69
2301 2531 8.868916 CAAAAATGTTCTTATATTTTGGGACGG 58.131 33.333 0.00 0.00 35.87 4.79
2302 2532 9.632807 TCAAAAATGTTCTTATATTTTGGGACG 57.367 29.630 8.80 0.00 35.87 4.79
2311 2541 9.520515 ACACCAGAGTCAAAAATGTTCTTATAT 57.479 29.630 0.00 0.00 0.00 0.86
2312 2542 8.918202 ACACCAGAGTCAAAAATGTTCTTATA 57.082 30.769 0.00 0.00 0.00 0.98
2313 2543 7.823745 ACACCAGAGTCAAAAATGTTCTTAT 57.176 32.000 0.00 0.00 0.00 1.73
2314 2544 7.990886 ACTACACCAGAGTCAAAAATGTTCTTA 59.009 33.333 0.00 0.00 0.00 2.10
2315 2545 6.828785 ACTACACCAGAGTCAAAAATGTTCTT 59.171 34.615 0.00 0.00 0.00 2.52
2316 2546 6.260936 CACTACACCAGAGTCAAAAATGTTCT 59.739 38.462 0.00 0.00 0.00 3.01
2317 2547 6.038271 ACACTACACCAGAGTCAAAAATGTTC 59.962 38.462 0.00 0.00 0.00 3.18
2318 2548 5.885912 ACACTACACCAGAGTCAAAAATGTT 59.114 36.000 0.00 0.00 0.00 2.71
2319 2549 5.437060 ACACTACACCAGAGTCAAAAATGT 58.563 37.500 0.00 0.00 0.00 2.71
2320 2550 6.377327 AACACTACACCAGAGTCAAAAATG 57.623 37.500 0.00 0.00 0.00 2.32
2321 2551 8.514330 TTTAACACTACACCAGAGTCAAAAAT 57.486 30.769 0.00 0.00 0.00 1.82
2322 2552 7.925043 TTTAACACTACACCAGAGTCAAAAA 57.075 32.000 0.00 0.00 0.00 1.94
2323 2553 7.925043 TTTTAACACTACACCAGAGTCAAAA 57.075 32.000 0.00 0.00 0.00 2.44
2324 2554 7.413219 CGTTTTTAACACTACACCAGAGTCAAA 60.413 37.037 0.00 0.00 0.00 2.69
2325 2555 6.036300 CGTTTTTAACACTACACCAGAGTCAA 59.964 38.462 0.00 0.00 0.00 3.18
2326 2556 5.521010 CGTTTTTAACACTACACCAGAGTCA 59.479 40.000 0.00 0.00 0.00 3.41
2327 2557 5.521372 ACGTTTTTAACACTACACCAGAGTC 59.479 40.000 0.00 0.00 0.00 3.36
2328 2558 5.422145 ACGTTTTTAACACTACACCAGAGT 58.578 37.500 0.00 0.00 0.00 3.24
2329 2559 5.978934 ACGTTTTTAACACTACACCAGAG 57.021 39.130 0.00 0.00 0.00 3.35
2330 2560 6.108015 AGAACGTTTTTAACACTACACCAGA 58.892 36.000 0.46 0.00 0.00 3.86
2331 2561 6.354039 AGAACGTTTTTAACACTACACCAG 57.646 37.500 0.46 0.00 0.00 4.00
2332 2562 6.740411 AAGAACGTTTTTAACACTACACCA 57.260 33.333 0.46 0.00 0.00 4.17
2344 2574 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
2345 2575 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
2346 2576 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
2347 2577 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
2348 2578 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
2349 2579 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
2350 2580 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
2351 2581 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
2352 2582 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
2353 2583 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
2354 2584 7.947782 ATACTCCCTCTGTCCCAAAATATAA 57.052 36.000 0.00 0.00 0.00 0.98
2355 2585 7.947782 AATACTCCCTCTGTCCCAAAATATA 57.052 36.000 0.00 0.00 0.00 0.86
2356 2586 6.848562 AATACTCCCTCTGTCCCAAAATAT 57.151 37.500 0.00 0.00 0.00 1.28
2357 2587 7.947782 ATAATACTCCCTCTGTCCCAAAATA 57.052 36.000 0.00 0.00 0.00 1.40
2358 2588 6.848562 ATAATACTCCCTCTGTCCCAAAAT 57.151 37.500 0.00 0.00 0.00 1.82
2359 2589 6.652205 AATAATACTCCCTCTGTCCCAAAA 57.348 37.500 0.00 0.00 0.00 2.44
2360 2590 6.652205 AAATAATACTCCCTCTGTCCCAAA 57.348 37.500 0.00 0.00 0.00 3.28
2361 2591 6.011981 ACAAAATAATACTCCCTCTGTCCCAA 60.012 38.462 0.00 0.00 0.00 4.12
2362 2592 5.491078 ACAAAATAATACTCCCTCTGTCCCA 59.509 40.000 0.00 0.00 0.00 4.37
2363 2593 5.823045 CACAAAATAATACTCCCTCTGTCCC 59.177 44.000 0.00 0.00 0.00 4.46
2364 2594 6.415573 ACACAAAATAATACTCCCTCTGTCC 58.584 40.000 0.00 0.00 0.00 4.02
2365 2595 7.923414 AACACAAAATAATACTCCCTCTGTC 57.077 36.000 0.00 0.00 0.00 3.51
2366 2596 8.576442 CAAAACACAAAATAATACTCCCTCTGT 58.424 33.333 0.00 0.00 0.00 3.41
2367 2597 8.576442 ACAAAACACAAAATAATACTCCCTCTG 58.424 33.333 0.00 0.00 0.00 3.35
2368 2598 8.576442 CACAAAACACAAAATAATACTCCCTCT 58.424 33.333 0.00 0.00 0.00 3.69
2369 2599 8.357402 ACACAAAACACAAAATAATACTCCCTC 58.643 33.333 0.00 0.00 0.00 4.30
2370 2600 8.245195 ACACAAAACACAAAATAATACTCCCT 57.755 30.769 0.00 0.00 0.00 4.20
2371 2601 9.968870 TTACACAAAACACAAAATAATACTCCC 57.031 29.630 0.00 0.00 0.00 4.30
2475 2705 1.751924 CTCACTAGAGTAAAGGCGGCT 59.248 52.381 5.25 5.25 37.11 5.52
2636 2877 9.383519 AGACGAAATGCTGAGAGAAAATATAAA 57.616 29.630 0.00 0.00 0.00 1.40
2941 3182 8.945195 TGGCAATGGAGAATATTTGAATAGAT 57.055 30.769 0.00 0.00 0.00 1.98
2942 3183 8.945195 ATGGCAATGGAGAATATTTGAATAGA 57.055 30.769 0.00 0.00 0.00 1.98
2943 3184 9.021807 AGATGGCAATGGAGAATATTTGAATAG 57.978 33.333 0.00 0.00 0.00 1.73
2944 3185 8.799367 CAGATGGCAATGGAGAATATTTGAATA 58.201 33.333 0.00 0.00 0.00 1.75
2945 3186 7.667557 CAGATGGCAATGGAGAATATTTGAAT 58.332 34.615 0.00 0.00 0.00 2.57
2946 3187 6.461927 GCAGATGGCAATGGAGAATATTTGAA 60.462 38.462 0.00 0.00 43.97 2.69
2947 3188 5.010314 GCAGATGGCAATGGAGAATATTTGA 59.990 40.000 0.00 0.00 43.97 2.69
2948 3189 5.227908 GCAGATGGCAATGGAGAATATTTG 58.772 41.667 0.00 0.00 43.97 2.32
2949 3190 5.464030 GCAGATGGCAATGGAGAATATTT 57.536 39.130 0.00 0.00 43.97 1.40
2963 3204 1.077501 TACAGGGCAAGCAGATGGC 60.078 57.895 2.67 2.67 44.56 4.40
2964 3205 0.465097 CCTACAGGGCAAGCAGATGG 60.465 60.000 0.00 0.00 0.00 3.51
2965 3206 3.091318 CCTACAGGGCAAGCAGATG 57.909 57.895 0.00 0.00 0.00 2.90
2984 3225 4.377021 TCTAACATCCGATATGGTGCAAC 58.623 43.478 0.00 0.00 39.52 4.17
2985 3226 4.681074 TCTAACATCCGATATGGTGCAA 57.319 40.909 0.00 0.00 39.52 4.08
2986 3227 4.890158 ATCTAACATCCGATATGGTGCA 57.110 40.909 0.00 0.00 39.52 4.57
2987 3228 8.818057 GTTATTATCTAACATCCGATATGGTGC 58.182 37.037 0.00 0.00 39.52 5.01
2988 3229 9.020813 CGTTATTATCTAACATCCGATATGGTG 57.979 37.037 0.00 0.00 39.52 4.17
2989 3230 8.963725 TCGTTATTATCTAACATCCGATATGGT 58.036 33.333 3.28 0.00 39.52 3.55
2990 3231 9.452065 CTCGTTATTATCTAACATCCGATATGG 57.548 37.037 3.28 0.00 40.09 2.74
3007 3248 9.499585 CTCTGTCTCGTTTATTTCTCGTTATTA 57.500 33.333 0.00 0.00 0.00 0.98
3008 3249 8.242053 TCTCTGTCTCGTTTATTTCTCGTTATT 58.758 33.333 0.00 0.00 0.00 1.40
3009 3250 7.759465 TCTCTGTCTCGTTTATTTCTCGTTAT 58.241 34.615 0.00 0.00 0.00 1.89
3010 3251 7.118825 TCTCTCTGTCTCGTTTATTTCTCGTTA 59.881 37.037 0.00 0.00 0.00 3.18
3011 3252 6.010294 TCTCTGTCTCGTTTATTTCTCGTT 57.990 37.500 0.00 0.00 0.00 3.85
3012 3253 5.411977 TCTCTCTGTCTCGTTTATTTCTCGT 59.588 40.000 0.00 0.00 0.00 4.18
3013 3254 5.735427 GTCTCTCTGTCTCGTTTATTTCTCG 59.265 44.000 0.00 0.00 0.00 4.04
3014 3255 6.525280 GTGTCTCTCTGTCTCGTTTATTTCTC 59.475 42.308 0.00 0.00 0.00 2.87
3015 3256 6.383415 GTGTCTCTCTGTCTCGTTTATTTCT 58.617 40.000 0.00 0.00 0.00 2.52
3016 3257 5.284188 CGTGTCTCTCTGTCTCGTTTATTTC 59.716 44.000 0.00 0.00 0.00 2.17
3017 3258 5.154932 CGTGTCTCTCTGTCTCGTTTATTT 58.845 41.667 0.00 0.00 0.00 1.40
3018 3259 4.379603 CCGTGTCTCTCTGTCTCGTTTATT 60.380 45.833 0.00 0.00 0.00 1.40
3019 3260 3.127203 CCGTGTCTCTCTGTCTCGTTTAT 59.873 47.826 0.00 0.00 0.00 1.40
3020 3261 2.483106 CCGTGTCTCTCTGTCTCGTTTA 59.517 50.000 0.00 0.00 0.00 2.01
3021 3262 1.267261 CCGTGTCTCTCTGTCTCGTTT 59.733 52.381 0.00 0.00 0.00 3.60
3022 3263 0.875728 CCGTGTCTCTCTGTCTCGTT 59.124 55.000 0.00 0.00 0.00 3.85
3023 3264 0.035036 TCCGTGTCTCTCTGTCTCGT 59.965 55.000 0.00 0.00 0.00 4.18
3024 3265 1.374560 ATCCGTGTCTCTCTGTCTCG 58.625 55.000 0.00 0.00 0.00 4.04
3025 3266 3.859411 AAATCCGTGTCTCTCTGTCTC 57.141 47.619 0.00 0.00 0.00 3.36
3026 3267 4.608948 AAAAATCCGTGTCTCTCTGTCT 57.391 40.909 0.00 0.00 0.00 3.41
3027 3268 5.869888 ACATAAAAATCCGTGTCTCTCTGTC 59.130 40.000 0.00 0.00 0.00 3.51
3028 3269 5.639506 CACATAAAAATCCGTGTCTCTCTGT 59.360 40.000 0.00 0.00 0.00 3.41
3029 3270 5.869344 TCACATAAAAATCCGTGTCTCTCTG 59.131 40.000 0.00 0.00 0.00 3.35
3030 3271 6.037786 TCACATAAAAATCCGTGTCTCTCT 57.962 37.500 0.00 0.00 0.00 3.10
3031 3272 6.721571 TTCACATAAAAATCCGTGTCTCTC 57.278 37.500 0.00 0.00 0.00 3.20
3032 3273 7.360361 GTTTTCACATAAAAATCCGTGTCTCT 58.640 34.615 0.00 0.00 31.29 3.10
3033 3274 6.581166 GGTTTTCACATAAAAATCCGTGTCTC 59.419 38.462 0.00 0.00 31.29 3.36
3034 3275 6.443792 GGTTTTCACATAAAAATCCGTGTCT 58.556 36.000 0.00 0.00 31.29 3.41
3035 3276 5.631929 GGGTTTTCACATAAAAATCCGTGTC 59.368 40.000 0.00 0.00 39.06 3.67
3036 3277 5.534407 GGGTTTTCACATAAAAATCCGTGT 58.466 37.500 0.00 0.00 39.06 4.49
3040 3281 5.120053 CGCAAGGGTTTTCACATAAAAATCC 59.880 40.000 3.69 3.69 45.78 3.01
3041 3282 6.151975 CGCAAGGGTTTTCACATAAAAATC 57.848 37.500 0.00 0.00 31.29 2.17
3059 3300 1.076332 CCGTAGTTTTCTCCCGCAAG 58.924 55.000 0.00 0.00 0.00 4.01
3060 3301 0.680618 TCCGTAGTTTTCTCCCGCAA 59.319 50.000 0.00 0.00 0.00 4.85
3061 3302 0.037975 GTCCGTAGTTTTCTCCCGCA 60.038 55.000 0.00 0.00 0.00 5.69
3062 3303 1.074872 CGTCCGTAGTTTTCTCCCGC 61.075 60.000 0.00 0.00 0.00 6.13
3063 3304 1.074872 GCGTCCGTAGTTTTCTCCCG 61.075 60.000 0.00 0.00 0.00 5.14
3064 3305 0.037975 TGCGTCCGTAGTTTTCTCCC 60.038 55.000 0.00 0.00 0.00 4.30
3065 3306 1.066136 GTGCGTCCGTAGTTTTCTCC 58.934 55.000 0.00 0.00 0.00 3.71
3066 3307 0.706729 CGTGCGTCCGTAGTTTTCTC 59.293 55.000 0.00 0.00 0.00 2.87
3067 3308 0.311790 TCGTGCGTCCGTAGTTTTCT 59.688 50.000 0.00 0.00 0.00 2.52
3068 3309 1.123756 CTTCGTGCGTCCGTAGTTTTC 59.876 52.381 0.00 0.00 0.00 2.29
3069 3310 1.134226 CTTCGTGCGTCCGTAGTTTT 58.866 50.000 0.00 0.00 0.00 2.43
3070 3311 0.665369 CCTTCGTGCGTCCGTAGTTT 60.665 55.000 0.00 0.00 0.00 2.66
3071 3312 1.080974 CCTTCGTGCGTCCGTAGTT 60.081 57.895 0.00 0.00 0.00 2.24
3072 3313 2.564975 CCTTCGTGCGTCCGTAGT 59.435 61.111 0.00 0.00 0.00 2.73
3073 3314 2.879462 GCCTTCGTGCGTCCGTAG 60.879 66.667 0.00 0.00 0.00 3.51
3081 3322 1.358725 TAGTGATTGCGCCTTCGTGC 61.359 55.000 4.18 0.00 46.11 5.34
3082 3323 1.004610 CATAGTGATTGCGCCTTCGTG 60.005 52.381 4.18 0.00 38.14 4.35
3083 3324 1.134818 TCATAGTGATTGCGCCTTCGT 60.135 47.619 4.18 0.00 38.14 3.85
3084 3325 1.570813 TCATAGTGATTGCGCCTTCG 58.429 50.000 4.18 0.00 39.07 3.79
3085 3326 2.225019 CCATCATAGTGATTGCGCCTTC 59.775 50.000 4.18 1.68 34.28 3.46
3086 3327 2.158769 TCCATCATAGTGATTGCGCCTT 60.159 45.455 4.18 0.00 34.28 4.35
3087 3328 1.417517 TCCATCATAGTGATTGCGCCT 59.582 47.619 4.18 0.00 34.28 5.52
3088 3329 1.802960 CTCCATCATAGTGATTGCGCC 59.197 52.381 4.18 0.00 34.28 6.53
3089 3330 1.802960 CCTCCATCATAGTGATTGCGC 59.197 52.381 0.00 0.00 34.28 6.09
3090 3331 3.244009 ACTCCTCCATCATAGTGATTGCG 60.244 47.826 0.00 0.00 34.28 4.85
3091 3332 4.348863 ACTCCTCCATCATAGTGATTGC 57.651 45.455 0.00 0.00 34.28 3.56
3092 3333 8.588472 TGTAATACTCCTCCATCATAGTGATTG 58.412 37.037 0.00 0.00 34.28 2.67
3093 3334 8.727100 TGTAATACTCCTCCATCATAGTGATT 57.273 34.615 0.00 0.00 34.28 2.57
3094 3335 8.727100 TTGTAATACTCCTCCATCATAGTGAT 57.273 34.615 0.00 0.00 37.65 3.06
3095 3336 8.421784 GTTTGTAATACTCCTCCATCATAGTGA 58.578 37.037 0.00 0.00 0.00 3.41
3096 3337 7.382488 CGTTTGTAATACTCCTCCATCATAGTG 59.618 40.741 0.00 0.00 0.00 2.74
3097 3338 7.434492 CGTTTGTAATACTCCTCCATCATAGT 58.566 38.462 0.00 0.00 0.00 2.12
3098 3339 6.366332 GCGTTTGTAATACTCCTCCATCATAG 59.634 42.308 0.00 0.00 0.00 2.23
3099 3340 6.220930 GCGTTTGTAATACTCCTCCATCATA 58.779 40.000 0.00 0.00 0.00 2.15
3100 3341 5.057149 GCGTTTGTAATACTCCTCCATCAT 58.943 41.667 0.00 0.00 0.00 2.45
3101 3342 4.439057 GCGTTTGTAATACTCCTCCATCA 58.561 43.478 0.00 0.00 0.00 3.07
3102 3343 3.489785 CGCGTTTGTAATACTCCTCCATC 59.510 47.826 0.00 0.00 0.00 3.51
3103 3344 3.131577 TCGCGTTTGTAATACTCCTCCAT 59.868 43.478 5.77 0.00 0.00 3.41
3104 3345 2.492881 TCGCGTTTGTAATACTCCTCCA 59.507 45.455 5.77 0.00 0.00 3.86
3105 3346 3.114065 CTCGCGTTTGTAATACTCCTCC 58.886 50.000 5.77 0.00 0.00 4.30
3106 3347 3.790288 GTCTCGCGTTTGTAATACTCCTC 59.210 47.826 5.77 0.00 0.00 3.71
3107 3348 3.730061 CGTCTCGCGTTTGTAATACTCCT 60.730 47.826 5.77 0.00 35.54 3.69
3108 3349 2.529090 CGTCTCGCGTTTGTAATACTCC 59.471 50.000 5.77 0.00 35.54 3.85
3109 3350 3.236980 GTCGTCTCGCGTTTGTAATACTC 59.763 47.826 5.77 0.00 42.13 2.59
3110 3351 3.166657 GTCGTCTCGCGTTTGTAATACT 58.833 45.455 5.77 0.00 42.13 2.12
3111 3352 2.910482 TGTCGTCTCGCGTTTGTAATAC 59.090 45.455 5.77 0.00 42.13 1.89
3112 3353 3.120234 TCTGTCGTCTCGCGTTTGTAATA 60.120 43.478 5.77 0.00 42.13 0.98
3113 3354 1.983605 CTGTCGTCTCGCGTTTGTAAT 59.016 47.619 5.77 0.00 42.13 1.89
3114 3355 1.002576 TCTGTCGTCTCGCGTTTGTAA 60.003 47.619 5.77 0.00 42.13 2.41
3115 3356 0.587768 TCTGTCGTCTCGCGTTTGTA 59.412 50.000 5.77 0.00 42.13 2.41
3116 3357 0.933509 GTCTGTCGTCTCGCGTTTGT 60.934 55.000 5.77 0.00 42.13 2.83
3117 3358 1.606350 GGTCTGTCGTCTCGCGTTTG 61.606 60.000 5.77 0.00 42.13 2.93
3118 3359 1.371389 GGTCTGTCGTCTCGCGTTT 60.371 57.895 5.77 0.00 42.13 3.60
3119 3360 2.254651 GGTCTGTCGTCTCGCGTT 59.745 61.111 5.77 0.00 42.13 4.84
3120 3361 4.086178 CGGTCTGTCGTCTCGCGT 62.086 66.667 5.77 0.00 42.13 6.01
3121 3362 4.086178 ACGGTCTGTCGTCTCGCG 62.086 66.667 0.00 0.00 39.34 5.87
3130 3371 0.892358 TCGCACCTAAGACGGTCTGT 60.892 55.000 12.12 2.45 34.29 3.41
3131 3372 0.456312 GTCGCACCTAAGACGGTCTG 60.456 60.000 12.12 1.76 34.29 3.51
3132 3373 0.608582 AGTCGCACCTAAGACGGTCT 60.609 55.000 4.45 4.45 41.86 3.85
3133 3374 1.089920 TAGTCGCACCTAAGACGGTC 58.910 55.000 0.00 0.00 41.86 4.79
3134 3375 0.807496 GTAGTCGCACCTAAGACGGT 59.193 55.000 0.00 0.00 41.86 4.83
3135 3376 0.806868 TGTAGTCGCACCTAAGACGG 59.193 55.000 0.00 0.00 41.86 4.79
3136 3377 2.451132 CATGTAGTCGCACCTAAGACG 58.549 52.381 0.00 0.00 41.86 4.18
3137 3378 2.481449 CCCATGTAGTCGCACCTAAGAC 60.481 54.545 0.00 0.00 37.63 3.01
3138 3379 1.754803 CCCATGTAGTCGCACCTAAGA 59.245 52.381 0.00 0.00 0.00 2.10
3139 3380 1.202533 CCCCATGTAGTCGCACCTAAG 60.203 57.143 0.00 0.00 0.00 2.18
3140 3381 0.828022 CCCCATGTAGTCGCACCTAA 59.172 55.000 0.00 0.00 0.00 2.69
3141 3382 0.324923 ACCCCATGTAGTCGCACCTA 60.325 55.000 0.00 0.00 0.00 3.08
3142 3383 0.324923 TACCCCATGTAGTCGCACCT 60.325 55.000 0.00 0.00 0.00 4.00
3143 3384 0.756903 ATACCCCATGTAGTCGCACC 59.243 55.000 0.00 0.00 31.61 5.01
3144 3385 3.955650 ATATACCCCATGTAGTCGCAC 57.044 47.619 0.00 0.00 31.61 5.34
3145 3386 5.265989 TCATATATACCCCATGTAGTCGCA 58.734 41.667 0.00 0.00 31.61 5.10
3146 3387 5.221263 CCTCATATATACCCCATGTAGTCGC 60.221 48.000 0.00 0.00 31.61 5.19
3147 3388 5.302059 CCCTCATATATACCCCATGTAGTCG 59.698 48.000 0.00 0.00 31.61 4.18
3148 3389 5.602978 CCCCTCATATATACCCCATGTAGTC 59.397 48.000 0.00 0.00 31.61 2.59
3149 3390 5.538877 CCCCTCATATATACCCCATGTAGT 58.461 45.833 0.00 0.00 31.61 2.73
3150 3391 4.348168 GCCCCTCATATATACCCCATGTAG 59.652 50.000 0.00 0.00 31.61 2.74
3151 3392 4.265538 TGCCCCTCATATATACCCCATGTA 60.266 45.833 0.00 0.00 0.00 2.29
3152 3393 3.123273 GCCCCTCATATATACCCCATGT 58.877 50.000 0.00 0.00 0.00 3.21
3153 3394 3.122480 TGCCCCTCATATATACCCCATG 58.878 50.000 0.00 0.00 0.00 3.66
3154 3395 3.524609 TGCCCCTCATATATACCCCAT 57.475 47.619 0.00 0.00 0.00 4.00
3155 3396 2.916934 GTTGCCCCTCATATATACCCCA 59.083 50.000 0.00 0.00 0.00 4.96
3156 3397 2.916934 TGTTGCCCCTCATATATACCCC 59.083 50.000 0.00 0.00 0.00 4.95
3157 3398 3.329520 TGTGTTGCCCCTCATATATACCC 59.670 47.826 0.00 0.00 0.00 3.69
3158 3399 4.634012 TGTGTTGCCCCTCATATATACC 57.366 45.455 0.00 0.00 0.00 2.73
3159 3400 6.156256 TCCTATGTGTTGCCCCTCATATATAC 59.844 42.308 0.00 0.00 0.00 1.47
3160 3401 6.268414 TCCTATGTGTTGCCCCTCATATATA 58.732 40.000 0.00 0.00 0.00 0.86
3161 3402 5.100811 TCCTATGTGTTGCCCCTCATATAT 58.899 41.667 0.00 0.00 0.00 0.86
3162 3403 4.498493 TCCTATGTGTTGCCCCTCATATA 58.502 43.478 0.00 0.00 0.00 0.86
3163 3404 3.326521 TCCTATGTGTTGCCCCTCATAT 58.673 45.455 0.00 0.00 0.00 1.78
3164 3405 2.705658 CTCCTATGTGTTGCCCCTCATA 59.294 50.000 0.00 0.00 0.00 2.15
3165 3406 1.492176 CTCCTATGTGTTGCCCCTCAT 59.508 52.381 0.00 0.00 0.00 2.90
3166 3407 0.911769 CTCCTATGTGTTGCCCCTCA 59.088 55.000 0.00 0.00 0.00 3.86
3167 3408 0.912486 ACTCCTATGTGTTGCCCCTC 59.088 55.000 0.00 0.00 0.00 4.30
3168 3409 0.912486 GACTCCTATGTGTTGCCCCT 59.088 55.000 0.00 0.00 0.00 4.79
3169 3410 0.107165 GGACTCCTATGTGTTGCCCC 60.107 60.000 0.00 0.00 0.00 5.80
3170 3411 0.912486 AGGACTCCTATGTGTTGCCC 59.088 55.000 0.00 0.00 28.47 5.36
3171 3412 2.290323 ACAAGGACTCCTATGTGTTGCC 60.290 50.000 0.00 0.00 31.13 4.52
3172 3413 3.059352 ACAAGGACTCCTATGTGTTGC 57.941 47.619 0.00 0.00 31.13 4.17
3173 3414 4.466370 TCCTACAAGGACTCCTATGTGTTG 59.534 45.833 16.91 10.88 40.06 3.33
3174 3415 4.684724 TCCTACAAGGACTCCTATGTGTT 58.315 43.478 16.91 1.73 40.06 3.32
3175 3416 4.332683 TCCTACAAGGACTCCTATGTGT 57.667 45.455 16.91 12.25 40.06 3.72
3189 3430 5.663456 ACAACTCGTTTACTTGTCCTACAA 58.337 37.500 0.00 0.00 36.54 2.41
3190 3431 5.266733 ACAACTCGTTTACTTGTCCTACA 57.733 39.130 0.00 0.00 0.00 2.74
3191 3432 6.442112 AGTACAACTCGTTTACTTGTCCTAC 58.558 40.000 0.00 0.00 30.76 3.18
3192 3433 6.639632 AGTACAACTCGTTTACTTGTCCTA 57.360 37.500 0.00 0.00 30.76 2.94
3193 3434 5.526506 AGTACAACTCGTTTACTTGTCCT 57.473 39.130 0.00 0.00 30.76 3.85
3194 3435 5.819270 GAGTACAACTCGTTTACTTGTCC 57.181 43.478 0.00 0.00 35.28 4.02
3206 3447 1.518286 GACGCGTACGAGTACAACTC 58.482 55.000 24.55 7.54 43.93 3.01
3207 3448 0.179240 CGACGCGTACGAGTACAACT 60.179 55.000 24.55 0.42 43.93 3.16
3208 3449 1.122419 CCGACGCGTACGAGTACAAC 61.122 60.000 24.55 11.19 43.93 3.32
3209 3450 1.132436 CCGACGCGTACGAGTACAA 59.868 57.895 24.55 0.00 43.93 2.41
3210 3451 0.734597 TACCGACGCGTACGAGTACA 60.735 55.000 24.55 7.41 43.93 2.90
3211 3452 0.314339 GTACCGACGCGTACGAGTAC 60.314 60.000 24.55 25.58 43.93 2.73
3212 3453 1.418342 GGTACCGACGCGTACGAGTA 61.418 60.000 24.55 21.29 43.93 2.59
3213 3454 2.740714 GGTACCGACGCGTACGAGT 61.741 63.158 24.75 24.75 43.93 4.18
3214 3455 2.021931 GGTACCGACGCGTACGAG 59.978 66.667 25.30 19.58 43.93 4.18
3215 3456 2.321333 TTGGTACCGACGCGTACGA 61.321 57.895 25.30 10.88 43.93 3.43
3217 3458 2.145905 CGTTGGTACCGACGCGTAC 61.146 63.158 35.36 6.52 45.15 3.67
3218 3459 2.175566 CGTTGGTACCGACGCGTA 59.824 61.111 35.36 1.36 45.15 4.42
3223 3464 0.385098 GCTTTTGCGTTGGTACCGAC 60.385 55.000 20.98 20.98 34.86 4.79
3224 3465 1.943293 GCTTTTGCGTTGGTACCGA 59.057 52.632 7.57 1.50 34.86 4.69
3225 3466 4.526152 GCTTTTGCGTTGGTACCG 57.474 55.556 7.57 0.00 34.86 4.02
3235 3476 0.109319 CATACGGTGTGGGCTTTTGC 60.109 55.000 0.00 0.00 46.64 3.68
3236 3477 1.243902 ACATACGGTGTGGGCTTTTG 58.756 50.000 9.73 0.00 40.28 2.44
3237 3478 2.039348 AGTACATACGGTGTGGGCTTTT 59.961 45.455 9.73 0.00 42.24 2.27
3238 3479 1.626825 AGTACATACGGTGTGGGCTTT 59.373 47.619 9.73 0.00 42.24 3.51
3239 3480 1.272807 AGTACATACGGTGTGGGCTT 58.727 50.000 9.73 0.00 42.24 4.35
3240 3481 1.753073 GTAGTACATACGGTGTGGGCT 59.247 52.381 9.73 8.77 42.24 5.19
3241 3482 2.214387 GTAGTACATACGGTGTGGGC 57.786 55.000 9.73 1.92 42.24 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.