Multiple sequence alignment - TraesCS4B01G149800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G149800 chr4B 100.000 3010 0 0 1 3010 223385556 223388565 0.000000e+00 5559
1 TraesCS4B01G149800 chr4B 95.694 418 7 1 281 687 240175058 240175475 0.000000e+00 662
2 TraesCS4B01G149800 chr4B 98.233 283 5 0 1 283 240174441 240174723 2.080000e-136 496
3 TraesCS4B01G149800 chr4B 91.850 319 17 2 615 924 223343014 223343332 1.280000e-118 436
4 TraesCS4B01G149800 chr4B 88.800 125 12 2 615 737 429690260 429690136 5.200000e-33 152
5 TraesCS4B01G149800 chr2D 95.291 1359 50 4 907 2264 647524386 647523041 0.000000e+00 2143
6 TraesCS4B01G149800 chr2D 89.752 644 17 10 2392 3008 647523040 647522419 0.000000e+00 778
7 TraesCS4B01G149800 chr2D 95.783 166 6 1 2842 3006 632318320 632318485 1.780000e-67 267
8 TraesCS4B01G149800 chr1B 91.854 1559 90 17 1322 2870 212662543 212661012 0.000000e+00 2141
9 TraesCS4B01G149800 chr1B 77.621 639 62 41 1980 2553 327836224 327836846 2.250000e-81 313
10 TraesCS4B01G149800 chr1B 87.500 272 23 6 654 924 524499338 524499599 1.360000e-78 303
11 TraesCS4B01G149800 chr1B 88.626 211 24 0 1044 1254 212662760 212662550 1.070000e-64 257
12 TraesCS4B01G149800 chr1B 94.118 170 8 2 2839 3006 439437632 439437463 1.070000e-64 257
13 TraesCS4B01G149800 chr1B 94.118 170 8 2 2839 3006 633758888 633758719 1.070000e-64 257
14 TraesCS4B01G149800 chr2A 95.143 1359 53 4 907 2264 772956238 772957584 0.000000e+00 2132
15 TraesCS4B01G149800 chr2A 93.966 1359 70 3 907 2264 700237556 700236209 0.000000e+00 2045
16 TraesCS4B01G149800 chr2A 96.802 1032 32 1 1234 2264 22590088 22591119 0.000000e+00 1722
17 TraesCS4B01G149800 chr2A 96.802 1032 32 1 1234 2264 22628354 22629385 0.000000e+00 1722
18 TraesCS4B01G149800 chr2A 90.248 646 13 11 2392 3010 22591120 22591742 0.000000e+00 798
19 TraesCS4B01G149800 chr2A 90.202 643 15 10 2392 3008 772957585 772958205 0.000000e+00 795
20 TraesCS4B01G149800 chr2A 90.093 646 14 11 2392 3010 22629386 22630008 0.000000e+00 793
21 TraesCS4B01G149800 chr2A 89.026 647 21 10 2392 3010 700236208 700235584 0.000000e+00 756
22 TraesCS4B01G149800 chr2A 96.386 166 5 1 2842 3006 759633323 759633158 3.820000e-69 272
23 TraesCS4B01G149800 chr1A 93.541 1347 56 19 918 2264 97163431 97162116 0.000000e+00 1977
24 TraesCS4B01G149800 chr1A 90.078 645 13 14 2392 3008 97162115 97161494 0.000000e+00 789
25 TraesCS4B01G149800 chr1A 77.008 635 70 36 1980 2553 296206349 296206968 8.160000e-76 294
26 TraesCS4B01G149800 chr1A 94.611 167 7 2 2839 3003 581640787 581640953 1.070000e-64 257
27 TraesCS4B01G149800 chr3A 93.467 1347 57 19 918 2264 136527623 136526308 0.000000e+00 1971
28 TraesCS4B01G149800 chr3A 90.093 646 12 12 2392 3010 136526307 136525687 0.000000e+00 791
29 TraesCS4B01G149800 chr7D 93.995 1149 34 4 1863 3010 11126405 11125291 0.000000e+00 1707
30 TraesCS4B01G149800 chr7D 96.436 1010 31 4 918 1927 11127436 11126432 0.000000e+00 1661
31 TraesCS4B01G149800 chr7D 83.168 707 88 14 1 691 366752882 366753573 4.260000e-173 617
32 TraesCS4B01G149800 chr2B 98.943 662 5 2 1 660 758098774 758099435 0.000000e+00 1182
33 TraesCS4B01G149800 chr2B 98.931 655 5 2 1 654 175752455 175753108 0.000000e+00 1170
34 TraesCS4B01G149800 chr6B 98.792 662 6 2 1 660 579218401 579217740 0.000000e+00 1177
35 TraesCS4B01G149800 chr6B 95.758 165 6 1 2843 3006 281009178 281009014 6.400000e-67 265
36 TraesCS4B01G149800 chr5A 90.568 774 42 19 918 1691 383828827 383829569 0.000000e+00 996
37 TraesCS4B01G149800 chr5A 90.373 644 12 11 2392 3008 383830572 383831192 0.000000e+00 800
38 TraesCS4B01G149800 chr5A 91.935 310 17 1 623 924 398678655 398678346 7.710000e-116 427
39 TraesCS4B01G149800 chr4A 92.576 660 39 3 1 659 12691619 12690969 0.000000e+00 939
40 TraesCS4B01G149800 chr4A 91.225 661 38 6 1 660 402707511 402706870 0.000000e+00 881
41 TraesCS4B01G149800 chr4A 93.750 272 17 0 653 924 374564923 374565194 2.790000e-110 409
42 TraesCS4B01G149800 chr4A 93.015 272 19 0 653 924 389500511 389500782 6.050000e-107 398
43 TraesCS4B01G149800 chr4A 91.941 273 21 1 652 924 381550198 381549927 6.090000e-102 381
44 TraesCS4B01G149800 chr5B 87.435 573 54 8 2 568 613169462 613168902 0.000000e+00 643
45 TraesCS4B01G149800 chr3B 87.086 573 60 8 2 568 754799332 754799896 1.180000e-178 636
46 TraesCS4B01G149800 chr3B 87.636 275 22 6 653 924 766718370 766718105 2.910000e-80 309
47 TraesCS4B01G149800 chr3B 95.758 165 6 1 2843 3006 143519835 143519999 6.400000e-67 265
48 TraesCS4B01G149800 chr7A 93.750 272 17 0 653 924 483858559 483858830 2.790000e-110 409
49 TraesCS4B01G149800 chr7A 93.529 170 9 2 2839 3006 434775643 434775474 4.980000e-63 252
50 TraesCS4B01G149800 chr1D 84.407 295 30 13 2269 2553 228296044 228296332 2.960000e-70 276
51 TraesCS4B01G149800 chr1D 84.354 294 30 13 2269 2553 208852557 208852271 1.060000e-69 274
52 TraesCS4B01G149800 chr1D 84.762 105 16 0 1073 1177 356416868 356416972 4.100000e-19 106
53 TraesCS4B01G149800 chr6D 79.618 314 51 12 616 925 288464946 288465250 2.350000e-51 213
54 TraesCS4B01G149800 chr6A 81.215 181 31 2 992 1172 577859059 577858882 3.130000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G149800 chr4B 223385556 223388565 3009 False 5559.0 5559 100.0000 1 3010 1 chr4B.!!$F2 3009
1 TraesCS4B01G149800 chr4B 240174441 240175475 1034 False 579.0 662 96.9635 1 687 2 chr4B.!!$F3 686
2 TraesCS4B01G149800 chr2D 647522419 647524386 1967 True 1460.5 2143 92.5215 907 3008 2 chr2D.!!$R1 2101
3 TraesCS4B01G149800 chr1B 212661012 212662760 1748 True 1199.0 2141 90.2400 1044 2870 2 chr1B.!!$R3 1826
4 TraesCS4B01G149800 chr1B 327836224 327836846 622 False 313.0 313 77.6210 1980 2553 1 chr1B.!!$F1 573
5 TraesCS4B01G149800 chr2A 772956238 772958205 1967 False 1463.5 2132 92.6725 907 3008 2 chr2A.!!$F3 2101
6 TraesCS4B01G149800 chr2A 700235584 700237556 1972 True 1400.5 2045 91.4960 907 3010 2 chr2A.!!$R2 2103
7 TraesCS4B01G149800 chr2A 22590088 22591742 1654 False 1260.0 1722 93.5250 1234 3010 2 chr2A.!!$F1 1776
8 TraesCS4B01G149800 chr2A 22628354 22630008 1654 False 1257.5 1722 93.4475 1234 3010 2 chr2A.!!$F2 1776
9 TraesCS4B01G149800 chr1A 97161494 97163431 1937 True 1383.0 1977 91.8095 918 3008 2 chr1A.!!$R1 2090
10 TraesCS4B01G149800 chr1A 296206349 296206968 619 False 294.0 294 77.0080 1980 2553 1 chr1A.!!$F1 573
11 TraesCS4B01G149800 chr3A 136525687 136527623 1936 True 1381.0 1971 91.7800 918 3010 2 chr3A.!!$R1 2092
12 TraesCS4B01G149800 chr7D 11125291 11127436 2145 True 1684.0 1707 95.2155 918 3010 2 chr7D.!!$R1 2092
13 TraesCS4B01G149800 chr7D 366752882 366753573 691 False 617.0 617 83.1680 1 691 1 chr7D.!!$F1 690
14 TraesCS4B01G149800 chr2B 758098774 758099435 661 False 1182.0 1182 98.9430 1 660 1 chr2B.!!$F2 659
15 TraesCS4B01G149800 chr2B 175752455 175753108 653 False 1170.0 1170 98.9310 1 654 1 chr2B.!!$F1 653
16 TraesCS4B01G149800 chr6B 579217740 579218401 661 True 1177.0 1177 98.7920 1 660 1 chr6B.!!$R2 659
17 TraesCS4B01G149800 chr5A 383828827 383831192 2365 False 898.0 996 90.4705 918 3008 2 chr5A.!!$F1 2090
18 TraesCS4B01G149800 chr4A 12690969 12691619 650 True 939.0 939 92.5760 1 659 1 chr4A.!!$R1 658
19 TraesCS4B01G149800 chr4A 402706870 402707511 641 True 881.0 881 91.2250 1 660 1 chr4A.!!$R3 659
20 TraesCS4B01G149800 chr5B 613168902 613169462 560 True 643.0 643 87.4350 2 568 1 chr5B.!!$R1 566
21 TraesCS4B01G149800 chr3B 754799332 754799896 564 False 636.0 636 87.0860 2 568 1 chr3B.!!$F2 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 1182 0.036732 AGAAAATCAGCCCTCGCACA 59.963 50.0 0.0 0.0 37.52 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 3254 1.743252 GCGGACCTTCAGGAAGCTG 60.743 63.158 0.0 0.0 37.11 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 7.817478 AGATGATCATTCGTGTACTGTTTGTAA 59.183 33.333 10.14 0.00 32.25 2.41
547 892 1.044790 GGCAACATGGGCAGGCTATT 61.045 55.000 12.79 0.00 0.00 1.73
707 1085 2.356386 GTCGCGACGTTTTTCAGAAA 57.644 45.000 25.19 0.00 0.00 2.52
708 1086 2.696255 GTCGCGACGTTTTTCAGAAAA 58.304 42.857 25.19 4.06 32.53 2.29
709 1087 3.092854 GTCGCGACGTTTTTCAGAAAAA 58.907 40.909 25.19 15.81 36.56 1.94
710 1088 3.722289 GTCGCGACGTTTTTCAGAAAAAT 59.278 39.130 25.19 8.90 41.85 1.82
711 1089 3.963724 TCGCGACGTTTTTCAGAAAAATC 59.036 39.130 21.31 15.29 41.85 2.17
712 1090 3.117346 CGCGACGTTTTTCAGAAAAATCC 59.883 43.478 21.31 10.59 41.85 3.01
713 1091 4.287720 GCGACGTTTTTCAGAAAAATCCT 58.712 39.130 21.31 9.05 41.85 3.24
714 1092 5.445845 GCGACGTTTTTCAGAAAAATCCTA 58.554 37.500 21.31 0.00 41.85 2.94
715 1093 5.338822 GCGACGTTTTTCAGAAAAATCCTAC 59.661 40.000 21.31 10.03 41.85 3.18
716 1094 6.656003 CGACGTTTTTCAGAAAAATCCTACT 58.344 36.000 21.31 4.00 41.85 2.57
717 1095 6.573725 CGACGTTTTTCAGAAAAATCCTACTG 59.426 38.462 21.31 9.69 41.85 2.74
718 1096 7.329588 ACGTTTTTCAGAAAAATCCTACTGT 57.670 32.000 21.31 10.18 41.85 3.55
719 1097 7.768240 ACGTTTTTCAGAAAAATCCTACTGTT 58.232 30.769 21.31 0.09 41.85 3.16
720 1098 8.248253 ACGTTTTTCAGAAAAATCCTACTGTTT 58.752 29.630 21.31 0.00 41.85 2.83
721 1099 9.083080 CGTTTTTCAGAAAAATCCTACTGTTTT 57.917 29.630 21.31 0.00 41.85 2.43
723 1101 8.940768 TTTTCAGAAAAATCCTACTGTTTTGG 57.059 30.769 5.81 0.00 29.44 3.28
724 1102 6.648879 TCAGAAAAATCCTACTGTTTTGGG 57.351 37.500 0.00 0.00 0.00 4.12
725 1103 6.133356 TCAGAAAAATCCTACTGTTTTGGGT 58.867 36.000 0.00 0.00 0.00 4.51
726 1104 7.291566 TCAGAAAAATCCTACTGTTTTGGGTA 58.708 34.615 0.00 0.00 0.00 3.69
727 1105 7.947890 TCAGAAAAATCCTACTGTTTTGGGTAT 59.052 33.333 0.00 0.00 0.00 2.73
728 1106 8.585018 CAGAAAAATCCTACTGTTTTGGGTATT 58.415 33.333 0.00 0.00 0.00 1.89
729 1107 8.803235 AGAAAAATCCTACTGTTTTGGGTATTC 58.197 33.333 0.00 0.00 0.00 1.75
730 1108 8.485578 AAAAATCCTACTGTTTTGGGTATTCA 57.514 30.769 0.00 0.00 0.00 2.57
731 1109 8.485578 AAAATCCTACTGTTTTGGGTATTCAA 57.514 30.769 0.00 0.00 0.00 2.69
732 1110 7.462571 AATCCTACTGTTTTGGGTATTCAAC 57.537 36.000 0.00 0.00 0.00 3.18
733 1111 4.998672 TCCTACTGTTTTGGGTATTCAACG 59.001 41.667 0.00 0.00 0.00 4.10
734 1112 3.636282 ACTGTTTTGGGTATTCAACGC 57.364 42.857 0.00 0.00 41.32 4.84
735 1113 2.031508 ACTGTTTTGGGTATTCAACGCG 60.032 45.455 3.53 3.53 43.79 6.01
736 1114 1.333115 GTTTTGGGTATTCAACGCGC 58.667 50.000 5.73 0.00 43.79 6.86
737 1115 0.952280 TTTTGGGTATTCAACGCGCA 59.048 45.000 5.73 0.00 43.79 6.09
738 1116 0.952280 TTTGGGTATTCAACGCGCAA 59.048 45.000 5.73 0.00 43.79 4.85
739 1117 1.169577 TTGGGTATTCAACGCGCAAT 58.830 45.000 5.73 4.77 43.79 3.56
740 1118 2.025589 TGGGTATTCAACGCGCAATA 57.974 45.000 5.73 3.65 43.79 1.90
741 1119 1.666700 TGGGTATTCAACGCGCAATAC 59.333 47.619 20.12 20.12 43.79 1.89
742 1120 1.937899 GGGTATTCAACGCGCAATACT 59.062 47.619 24.15 5.00 36.24 2.12
743 1121 2.033151 GGGTATTCAACGCGCAATACTC 60.033 50.000 24.15 20.40 36.24 2.59
744 1122 2.347292 GGTATTCAACGCGCAATACTCG 60.347 50.000 24.15 2.10 36.24 4.18
745 1123 0.650512 ATTCAACGCGCAATACTCGG 59.349 50.000 5.73 0.00 0.00 4.63
746 1124 0.388778 TTCAACGCGCAATACTCGGA 60.389 50.000 5.73 0.00 0.00 4.55
747 1125 0.388778 TCAACGCGCAATACTCGGAA 60.389 50.000 5.73 0.00 0.00 4.30
748 1126 0.650512 CAACGCGCAATACTCGGAAT 59.349 50.000 5.73 0.00 0.00 3.01
749 1127 1.855978 CAACGCGCAATACTCGGAATA 59.144 47.619 5.73 0.00 0.00 1.75
750 1128 2.212869 ACGCGCAATACTCGGAATAA 57.787 45.000 5.73 0.00 0.00 1.40
751 1129 2.124903 ACGCGCAATACTCGGAATAAG 58.875 47.619 5.73 0.00 0.00 1.73
752 1130 2.124903 CGCGCAATACTCGGAATAAGT 58.875 47.619 8.75 0.00 0.00 2.24
753 1131 2.538449 CGCGCAATACTCGGAATAAGTT 59.462 45.455 8.75 0.00 0.00 2.66
754 1132 3.732219 CGCGCAATACTCGGAATAAGTTA 59.268 43.478 8.75 0.00 0.00 2.24
755 1133 4.207635 CGCGCAATACTCGGAATAAGTTAA 59.792 41.667 8.75 0.00 0.00 2.01
756 1134 5.429615 GCGCAATACTCGGAATAAGTTAAC 58.570 41.667 0.30 0.00 0.00 2.01
757 1135 5.557703 GCGCAATACTCGGAATAAGTTAACC 60.558 44.000 0.30 0.00 0.00 2.85
758 1136 5.050567 CGCAATACTCGGAATAAGTTAACCC 60.051 44.000 0.88 0.00 0.00 4.11
759 1137 5.050567 GCAATACTCGGAATAAGTTAACCCG 60.051 44.000 15.96 15.96 41.36 5.28
760 1138 3.531934 ACTCGGAATAAGTTAACCCGG 57.468 47.619 19.64 14.67 40.48 5.73
761 1139 3.099141 ACTCGGAATAAGTTAACCCGGA 58.901 45.455 19.64 10.20 40.48 5.14
762 1140 3.118992 ACTCGGAATAAGTTAACCCGGAC 60.119 47.826 19.64 0.00 40.48 4.79
763 1141 2.168313 TCGGAATAAGTTAACCCGGACC 59.832 50.000 19.64 8.80 40.48 4.46
764 1142 2.093553 CGGAATAAGTTAACCCGGACCA 60.094 50.000 0.73 0.00 36.81 4.02
765 1143 3.538591 GGAATAAGTTAACCCGGACCAG 58.461 50.000 0.73 0.00 0.00 4.00
766 1144 3.054875 GGAATAAGTTAACCCGGACCAGT 60.055 47.826 0.73 0.00 0.00 4.00
767 1145 4.162131 GGAATAAGTTAACCCGGACCAGTA 59.838 45.833 0.73 0.00 0.00 2.74
768 1146 4.743057 ATAAGTTAACCCGGACCAGTAC 57.257 45.455 0.73 0.00 0.00 2.73
769 1147 2.014010 AGTTAACCCGGACCAGTACA 57.986 50.000 0.73 0.00 0.00 2.90
770 1148 2.328319 AGTTAACCCGGACCAGTACAA 58.672 47.619 0.73 0.00 0.00 2.41
771 1149 2.037641 AGTTAACCCGGACCAGTACAAC 59.962 50.000 0.73 0.58 0.00 3.32
772 1150 0.975887 TAACCCGGACCAGTACAACC 59.024 55.000 0.73 0.00 0.00 3.77
773 1151 2.103339 AACCCGGACCAGTACAACCG 62.103 60.000 0.73 11.20 44.16 4.44
774 1152 2.277591 CCCGGACCAGTACAACCGA 61.278 63.158 0.73 0.00 46.94 4.69
775 1153 1.214589 CCGGACCAGTACAACCGAG 59.785 63.158 17.04 7.45 46.94 4.63
776 1154 1.246056 CCGGACCAGTACAACCGAGA 61.246 60.000 17.04 0.00 46.94 4.04
777 1155 0.599558 CGGACCAGTACAACCGAGAA 59.400 55.000 12.31 0.00 46.94 2.87
778 1156 1.000060 CGGACCAGTACAACCGAGAAA 60.000 52.381 12.31 0.00 46.94 2.52
779 1157 2.546373 CGGACCAGTACAACCGAGAAAA 60.546 50.000 12.31 0.00 46.94 2.29
780 1158 3.469739 GGACCAGTACAACCGAGAAAAA 58.530 45.455 0.00 0.00 0.00 1.94
800 1178 4.773323 AAAGAAAGAAAATCAGCCCTCG 57.227 40.909 0.00 0.00 0.00 4.63
801 1179 2.087646 AGAAAGAAAATCAGCCCTCGC 58.912 47.619 0.00 0.00 0.00 5.03
802 1180 1.812571 GAAAGAAAATCAGCCCTCGCA 59.187 47.619 0.00 0.00 37.52 5.10
803 1181 1.168714 AAGAAAATCAGCCCTCGCAC 58.831 50.000 0.00 0.00 37.52 5.34
804 1182 0.036732 AGAAAATCAGCCCTCGCACA 59.963 50.000 0.00 0.00 37.52 4.57
805 1183 0.881118 GAAAATCAGCCCTCGCACAA 59.119 50.000 0.00 0.00 37.52 3.33
806 1184 0.598065 AAAATCAGCCCTCGCACAAC 59.402 50.000 0.00 0.00 37.52 3.32
807 1185 1.244019 AAATCAGCCCTCGCACAACC 61.244 55.000 0.00 0.00 37.52 3.77
808 1186 3.628646 ATCAGCCCTCGCACAACCC 62.629 63.158 0.00 0.00 37.52 4.11
809 1187 4.335647 CAGCCCTCGCACAACCCT 62.336 66.667 0.00 0.00 37.52 4.34
810 1188 4.335647 AGCCCTCGCACAACCCTG 62.336 66.667 0.00 0.00 37.52 4.45
813 1191 4.335647 CCTCGCACAACCCTGCCT 62.336 66.667 0.00 0.00 33.18 4.75
814 1192 2.743928 CTCGCACAACCCTGCCTC 60.744 66.667 0.00 0.00 33.18 4.70
815 1193 4.329545 TCGCACAACCCTGCCTCC 62.330 66.667 0.00 0.00 33.18 4.30
817 1195 4.284550 GCACAACCCTGCCTCCCA 62.285 66.667 0.00 0.00 0.00 4.37
818 1196 2.520458 CACAACCCTGCCTCCCAA 59.480 61.111 0.00 0.00 0.00 4.12
819 1197 1.077265 CACAACCCTGCCTCCCAAT 59.923 57.895 0.00 0.00 0.00 3.16
820 1198 0.967380 CACAACCCTGCCTCCCAATC 60.967 60.000 0.00 0.00 0.00 2.67
821 1199 1.380380 CAACCCTGCCTCCCAATCC 60.380 63.158 0.00 0.00 0.00 3.01
822 1200 2.626467 AACCCTGCCTCCCAATCCC 61.626 63.158 0.00 0.00 0.00 3.85
823 1201 3.825623 CCCTGCCTCCCAATCCCC 61.826 72.222 0.00 0.00 0.00 4.81
824 1202 4.195334 CCTGCCTCCCAATCCCCG 62.195 72.222 0.00 0.00 0.00 5.73
825 1203 3.411517 CTGCCTCCCAATCCCCGT 61.412 66.667 0.00 0.00 0.00 5.28
826 1204 3.406595 CTGCCTCCCAATCCCCGTC 62.407 68.421 0.00 0.00 0.00 4.79
827 1205 3.090532 GCCTCCCAATCCCCGTCT 61.091 66.667 0.00 0.00 0.00 4.18
828 1206 3.108288 GCCTCCCAATCCCCGTCTC 62.108 68.421 0.00 0.00 0.00 3.36
829 1207 2.444256 CCTCCCAATCCCCGTCTCC 61.444 68.421 0.00 0.00 0.00 3.71
830 1208 1.689233 CTCCCAATCCCCGTCTCCA 60.689 63.158 0.00 0.00 0.00 3.86
831 1209 1.972660 CTCCCAATCCCCGTCTCCAC 61.973 65.000 0.00 0.00 0.00 4.02
832 1210 2.590092 CCAATCCCCGTCTCCACC 59.410 66.667 0.00 0.00 0.00 4.61
833 1211 1.995626 CCAATCCCCGTCTCCACCT 60.996 63.158 0.00 0.00 0.00 4.00
834 1212 1.522569 CAATCCCCGTCTCCACCTC 59.477 63.158 0.00 0.00 0.00 3.85
835 1213 1.689582 AATCCCCGTCTCCACCTCC 60.690 63.158 0.00 0.00 0.00 4.30
836 1214 2.182858 AATCCCCGTCTCCACCTCCT 62.183 60.000 0.00 0.00 0.00 3.69
837 1215 2.880629 ATCCCCGTCTCCACCTCCTG 62.881 65.000 0.00 0.00 0.00 3.86
838 1216 3.775654 CCCGTCTCCACCTCCTGC 61.776 72.222 0.00 0.00 0.00 4.85
839 1217 3.775654 CCGTCTCCACCTCCTGCC 61.776 72.222 0.00 0.00 0.00 4.85
840 1218 2.681778 CGTCTCCACCTCCTGCCT 60.682 66.667 0.00 0.00 0.00 4.75
841 1219 2.716017 CGTCTCCACCTCCTGCCTC 61.716 68.421 0.00 0.00 0.00 4.70
842 1220 2.363018 TCTCCACCTCCTGCCTCG 60.363 66.667 0.00 0.00 0.00 4.63
843 1221 4.154347 CTCCACCTCCTGCCTCGC 62.154 72.222 0.00 0.00 0.00 5.03
894 1272 2.281900 GGCACGTTTACCCCTGCA 60.282 61.111 0.00 0.00 0.00 4.41
895 1273 2.622962 GGCACGTTTACCCCTGCAC 61.623 63.158 0.00 0.00 0.00 4.57
896 1274 2.961669 GCACGTTTACCCCTGCACG 61.962 63.158 0.00 0.00 38.62 5.34
897 1275 1.301087 CACGTTTACCCCTGCACGA 60.301 57.895 0.00 0.00 36.48 4.35
898 1276 1.301165 ACGTTTACCCCTGCACGAC 60.301 57.895 0.00 0.00 36.48 4.34
899 1277 2.030958 CGTTTACCCCTGCACGACC 61.031 63.158 0.00 0.00 34.49 4.79
900 1278 2.030958 GTTTACCCCTGCACGACCG 61.031 63.158 0.00 0.00 0.00 4.79
901 1279 3.242897 TTTACCCCTGCACGACCGG 62.243 63.158 0.00 0.00 0.00 5.28
905 1283 4.814294 CCCTGCACGACCGGCTAC 62.814 72.222 0.00 0.00 0.00 3.58
906 1284 4.063967 CCTGCACGACCGGCTACA 62.064 66.667 0.00 0.00 0.00 2.74
907 1285 2.809601 CTGCACGACCGGCTACAC 60.810 66.667 0.00 0.00 0.00 2.90
908 1286 4.710695 TGCACGACCGGCTACACG 62.711 66.667 0.00 2.44 0.00 4.49
1029 1407 1.077429 GGCTCCTAGGCACAAAGGG 60.077 63.158 2.96 0.00 40.97 3.95
1033 1411 1.078426 CCTAGGCACAAAGGGGACG 60.078 63.158 0.00 0.00 31.16 4.79
1035 1413 1.838073 CTAGGCACAAAGGGGACGGT 61.838 60.000 0.00 0.00 0.00 4.83
1059 1437 1.276622 CGGGGGAGAGAAGAAGGAAA 58.723 55.000 0.00 0.00 0.00 3.13
1216 1594 0.325272 GAGGATCCCCGGCCTAATTC 59.675 60.000 8.55 0.00 37.58 2.17
1399 1777 0.326522 TCTCCCTGCCTGAGCCATAA 60.327 55.000 0.00 0.00 38.69 1.90
1641 2019 5.582665 GCTACTGGTGTCTCAAAGATTAAGG 59.417 44.000 0.00 0.00 0.00 2.69
1923 2821 6.983307 TGTTGTCCATTGGTTTAACAGAAATG 59.017 34.615 13.93 4.30 0.00 2.32
1925 2823 7.118496 TGTCCATTGGTTTAACAGAAATGTT 57.882 32.000 1.86 0.00 35.93 2.71
2114 3037 9.343539 AGATTTTGATCCAACCTATTAAGTAGC 57.656 33.333 0.00 0.00 0.00 3.58
2137 3065 5.278957 GCACCACACAAATTACAGGAGAATT 60.279 40.000 0.00 0.00 0.00 2.17
2255 3183 9.297037 CGGAAGATATCCTTTATATTTTTGGGT 57.703 33.333 0.00 0.00 46.98 4.51
2300 3254 2.816087 TGGAAAGCTCTTGCATGACTTC 59.184 45.455 13.71 9.95 42.74 3.01
2504 3462 3.621794 CTTTCTGTTCTTTCCACAAGCG 58.378 45.455 0.00 0.00 0.00 4.68
2599 3566 3.776969 AGTTGATTGCATCCTCTAGACCA 59.223 43.478 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
691 1069 4.287720 AGGATTTTTCTGAAAAACGTCGC 58.712 39.130 25.58 15.35 42.57 5.19
692 1070 6.573725 CAGTAGGATTTTTCTGAAAAACGTCG 59.426 38.462 25.58 10.56 42.57 5.12
693 1071 7.415229 ACAGTAGGATTTTTCTGAAAAACGTC 58.585 34.615 25.58 20.18 42.57 4.34
694 1072 7.329588 ACAGTAGGATTTTTCTGAAAAACGT 57.670 32.000 25.58 21.07 42.57 3.99
695 1073 8.628882 AAACAGTAGGATTTTTCTGAAAAACG 57.371 30.769 25.58 13.98 42.57 3.60
697 1075 9.377312 CCAAAACAGTAGGATTTTTCTGAAAAA 57.623 29.630 25.35 25.35 43.76 1.94
698 1076 7.984617 CCCAAAACAGTAGGATTTTTCTGAAAA 59.015 33.333 11.33 11.33 38.96 2.29
699 1077 7.125053 ACCCAAAACAGTAGGATTTTTCTGAAA 59.875 33.333 0.00 0.00 0.00 2.69
700 1078 6.609616 ACCCAAAACAGTAGGATTTTTCTGAA 59.390 34.615 0.00 0.00 0.00 3.02
701 1079 6.133356 ACCCAAAACAGTAGGATTTTTCTGA 58.867 36.000 0.00 0.00 0.00 3.27
702 1080 6.405278 ACCCAAAACAGTAGGATTTTTCTG 57.595 37.500 0.00 0.00 0.00 3.02
703 1081 8.721133 AATACCCAAAACAGTAGGATTTTTCT 57.279 30.769 0.00 0.00 0.00 2.52
704 1082 8.581578 TGAATACCCAAAACAGTAGGATTTTTC 58.418 33.333 0.00 0.00 0.00 2.29
705 1083 8.485578 TGAATACCCAAAACAGTAGGATTTTT 57.514 30.769 0.00 0.00 0.00 1.94
706 1084 8.364894 GTTGAATACCCAAAACAGTAGGATTTT 58.635 33.333 0.00 0.00 0.00 1.82
707 1085 7.308951 CGTTGAATACCCAAAACAGTAGGATTT 60.309 37.037 0.00 0.00 0.00 2.17
708 1086 6.150474 CGTTGAATACCCAAAACAGTAGGATT 59.850 38.462 0.00 0.00 0.00 3.01
709 1087 5.646360 CGTTGAATACCCAAAACAGTAGGAT 59.354 40.000 0.00 0.00 0.00 3.24
710 1088 4.998672 CGTTGAATACCCAAAACAGTAGGA 59.001 41.667 0.00 0.00 0.00 2.94
711 1089 4.379082 GCGTTGAATACCCAAAACAGTAGG 60.379 45.833 0.00 0.00 0.00 3.18
712 1090 4.668177 CGCGTTGAATACCCAAAACAGTAG 60.668 45.833 0.00 0.00 0.00 2.57
713 1091 3.186817 CGCGTTGAATACCCAAAACAGTA 59.813 43.478 0.00 0.00 0.00 2.74
714 1092 2.031508 CGCGTTGAATACCCAAAACAGT 60.032 45.455 0.00 0.00 0.00 3.55
715 1093 2.580589 CGCGTTGAATACCCAAAACAG 58.419 47.619 0.00 0.00 0.00 3.16
716 1094 1.335142 GCGCGTTGAATACCCAAAACA 60.335 47.619 8.43 0.00 0.00 2.83
717 1095 1.333115 GCGCGTTGAATACCCAAAAC 58.667 50.000 8.43 0.00 0.00 2.43
718 1096 0.952280 TGCGCGTTGAATACCCAAAA 59.048 45.000 8.43 0.00 0.00 2.44
719 1097 0.952280 TTGCGCGTTGAATACCCAAA 59.048 45.000 8.43 0.00 0.00 3.28
720 1098 1.169577 ATTGCGCGTTGAATACCCAA 58.830 45.000 8.43 0.00 0.00 4.12
721 1099 1.666700 GTATTGCGCGTTGAATACCCA 59.333 47.619 18.94 0.96 31.48 4.51
722 1100 1.937899 AGTATTGCGCGTTGAATACCC 59.062 47.619 22.83 9.18 36.20 3.69
723 1101 2.347292 CGAGTATTGCGCGTTGAATACC 60.347 50.000 22.83 16.83 36.20 2.73
724 1102 2.347292 CCGAGTATTGCGCGTTGAATAC 60.347 50.000 20.71 20.71 38.74 1.89
725 1103 1.855978 CCGAGTATTGCGCGTTGAATA 59.144 47.619 8.43 5.64 38.74 1.75
726 1104 0.650512 CCGAGTATTGCGCGTTGAAT 59.349 50.000 8.43 6.68 38.74 2.57
727 1105 0.388778 TCCGAGTATTGCGCGTTGAA 60.389 50.000 8.43 0.00 38.74 2.69
728 1106 0.388778 TTCCGAGTATTGCGCGTTGA 60.389 50.000 8.43 0.00 38.74 3.18
729 1107 0.650512 ATTCCGAGTATTGCGCGTTG 59.349 50.000 8.43 0.00 38.74 4.10
730 1108 2.212869 TATTCCGAGTATTGCGCGTT 57.787 45.000 8.43 0.00 38.74 4.84
731 1109 2.124903 CTTATTCCGAGTATTGCGCGT 58.875 47.619 8.43 0.00 38.74 6.01
732 1110 2.124903 ACTTATTCCGAGTATTGCGCG 58.875 47.619 0.00 0.00 40.10 6.86
733 1111 5.429615 GTTAACTTATTCCGAGTATTGCGC 58.570 41.667 0.00 0.00 0.00 6.09
734 1112 5.050567 GGGTTAACTTATTCCGAGTATTGCG 60.051 44.000 5.42 0.00 0.00 4.85
735 1113 5.050567 CGGGTTAACTTATTCCGAGTATTGC 60.051 44.000 13.11 0.00 42.94 3.56
736 1114 5.464389 CCGGGTTAACTTATTCCGAGTATTG 59.536 44.000 18.25 1.22 42.94 1.90
737 1115 5.363580 TCCGGGTTAACTTATTCCGAGTATT 59.636 40.000 18.25 0.00 42.94 1.89
738 1116 4.895297 TCCGGGTTAACTTATTCCGAGTAT 59.105 41.667 18.25 0.00 42.94 2.12
739 1117 4.097892 GTCCGGGTTAACTTATTCCGAGTA 59.902 45.833 18.25 4.54 42.94 2.59
740 1118 3.099141 TCCGGGTTAACTTATTCCGAGT 58.901 45.455 18.25 0.00 42.94 4.18
741 1119 3.451526 GTCCGGGTTAACTTATTCCGAG 58.548 50.000 18.25 10.46 42.94 4.63
742 1120 2.168313 GGTCCGGGTTAACTTATTCCGA 59.832 50.000 18.25 5.46 42.94 4.55
743 1121 2.093553 TGGTCCGGGTTAACTTATTCCG 60.094 50.000 0.00 11.84 40.32 4.30
744 1122 3.054875 ACTGGTCCGGGTTAACTTATTCC 60.055 47.826 0.00 4.47 0.00 3.01
745 1123 4.212143 ACTGGTCCGGGTTAACTTATTC 57.788 45.455 0.00 0.00 0.00 1.75
746 1124 4.531732 TGTACTGGTCCGGGTTAACTTATT 59.468 41.667 0.00 0.00 0.00 1.40
747 1125 4.095946 TGTACTGGTCCGGGTTAACTTAT 58.904 43.478 0.00 0.00 0.00 1.73
748 1126 3.505386 TGTACTGGTCCGGGTTAACTTA 58.495 45.455 0.00 0.00 0.00 2.24
749 1127 2.328319 TGTACTGGTCCGGGTTAACTT 58.672 47.619 0.00 0.00 0.00 2.66
750 1128 2.014010 TGTACTGGTCCGGGTTAACT 57.986 50.000 0.00 0.00 0.00 2.24
751 1129 2.416747 GTTGTACTGGTCCGGGTTAAC 58.583 52.381 0.00 0.00 0.00 2.01
752 1130 1.347378 GGTTGTACTGGTCCGGGTTAA 59.653 52.381 0.00 0.00 0.00 2.01
753 1131 0.975887 GGTTGTACTGGTCCGGGTTA 59.024 55.000 0.00 0.00 0.00 2.85
754 1132 1.756665 GGTTGTACTGGTCCGGGTT 59.243 57.895 0.00 0.00 0.00 4.11
755 1133 2.576832 CGGTTGTACTGGTCCGGGT 61.577 63.158 0.00 0.00 39.41 5.28
756 1134 2.221906 CTCGGTTGTACTGGTCCGGG 62.222 65.000 0.00 9.98 42.71 5.73
757 1135 1.214589 CTCGGTTGTACTGGTCCGG 59.785 63.158 0.00 0.00 42.71 5.14
758 1136 0.599558 TTCTCGGTTGTACTGGTCCG 59.400 55.000 10.55 10.55 43.65 4.79
759 1137 2.825861 TTTCTCGGTTGTACTGGTCC 57.174 50.000 0.00 0.00 0.00 4.46
777 1155 5.532557 CGAGGGCTGATTTTCTTTCTTTTT 58.467 37.500 0.00 0.00 0.00 1.94
778 1156 4.559502 GCGAGGGCTGATTTTCTTTCTTTT 60.560 41.667 0.00 0.00 35.83 2.27
779 1157 3.057245 GCGAGGGCTGATTTTCTTTCTTT 60.057 43.478 0.00 0.00 35.83 2.52
780 1158 2.489722 GCGAGGGCTGATTTTCTTTCTT 59.510 45.455 0.00 0.00 35.83 2.52
781 1159 2.087646 GCGAGGGCTGATTTTCTTTCT 58.912 47.619 0.00 0.00 35.83 2.52
782 1160 1.812571 TGCGAGGGCTGATTTTCTTTC 59.187 47.619 0.00 0.00 40.82 2.62
783 1161 1.541588 GTGCGAGGGCTGATTTTCTTT 59.458 47.619 0.00 0.00 40.82 2.52
784 1162 1.168714 GTGCGAGGGCTGATTTTCTT 58.831 50.000 0.00 0.00 40.82 2.52
785 1163 0.036732 TGTGCGAGGGCTGATTTTCT 59.963 50.000 0.00 0.00 40.82 2.52
786 1164 0.881118 TTGTGCGAGGGCTGATTTTC 59.119 50.000 0.00 0.00 40.82 2.29
787 1165 0.598065 GTTGTGCGAGGGCTGATTTT 59.402 50.000 0.00 0.00 40.82 1.82
788 1166 1.244019 GGTTGTGCGAGGGCTGATTT 61.244 55.000 0.00 0.00 40.82 2.17
789 1167 1.675641 GGTTGTGCGAGGGCTGATT 60.676 57.895 0.00 0.00 40.82 2.57
790 1168 2.045926 GGTTGTGCGAGGGCTGAT 60.046 61.111 0.00 0.00 40.82 2.90
791 1169 4.329545 GGGTTGTGCGAGGGCTGA 62.330 66.667 0.00 0.00 40.82 4.26
792 1170 4.335647 AGGGTTGTGCGAGGGCTG 62.336 66.667 0.00 0.00 40.82 4.85
793 1171 4.335647 CAGGGTTGTGCGAGGGCT 62.336 66.667 0.00 0.00 40.82 5.19
796 1174 4.335647 AGGCAGGGTTGTGCGAGG 62.336 66.667 0.00 0.00 45.00 4.63
797 1175 2.743928 GAGGCAGGGTTGTGCGAG 60.744 66.667 0.00 0.00 45.00 5.03
798 1176 4.329545 GGAGGCAGGGTTGTGCGA 62.330 66.667 0.00 0.00 45.00 5.10
800 1178 3.808218 TTGGGAGGCAGGGTTGTGC 62.808 63.158 0.00 0.00 43.19 4.57
801 1179 0.967380 GATTGGGAGGCAGGGTTGTG 60.967 60.000 0.00 0.00 0.00 3.33
802 1180 1.384191 GATTGGGAGGCAGGGTTGT 59.616 57.895 0.00 0.00 0.00 3.32
803 1181 1.380380 GGATTGGGAGGCAGGGTTG 60.380 63.158 0.00 0.00 0.00 3.77
804 1182 2.626467 GGGATTGGGAGGCAGGGTT 61.626 63.158 0.00 0.00 0.00 4.11
805 1183 3.023735 GGGATTGGGAGGCAGGGT 61.024 66.667 0.00 0.00 0.00 4.34
806 1184 3.825623 GGGGATTGGGAGGCAGGG 61.826 72.222 0.00 0.00 0.00 4.45
807 1185 4.195334 CGGGGATTGGGAGGCAGG 62.195 72.222 0.00 0.00 0.00 4.85
808 1186 3.406595 GACGGGGATTGGGAGGCAG 62.407 68.421 0.00 0.00 0.00 4.85
809 1187 3.407967 GACGGGGATTGGGAGGCA 61.408 66.667 0.00 0.00 0.00 4.75
810 1188 3.090532 AGACGGGGATTGGGAGGC 61.091 66.667 0.00 0.00 0.00 4.70
811 1189 2.444256 GGAGACGGGGATTGGGAGG 61.444 68.421 0.00 0.00 0.00 4.30
812 1190 1.689233 TGGAGACGGGGATTGGGAG 60.689 63.158 0.00 0.00 0.00 4.30
813 1191 1.993391 GTGGAGACGGGGATTGGGA 60.993 63.158 0.00 0.00 0.00 4.37
814 1192 2.590092 GTGGAGACGGGGATTGGG 59.410 66.667 0.00 0.00 0.00 4.12
815 1193 1.972660 GAGGTGGAGACGGGGATTGG 61.973 65.000 0.00 0.00 0.00 3.16
816 1194 1.522569 GAGGTGGAGACGGGGATTG 59.477 63.158 0.00 0.00 0.00 2.67
817 1195 1.689582 GGAGGTGGAGACGGGGATT 60.690 63.158 0.00 0.00 0.00 3.01
818 1196 2.041819 GGAGGTGGAGACGGGGAT 60.042 66.667 0.00 0.00 0.00 3.85
819 1197 3.273654 AGGAGGTGGAGACGGGGA 61.274 66.667 0.00 0.00 0.00 4.81
820 1198 3.077556 CAGGAGGTGGAGACGGGG 61.078 72.222 0.00 0.00 0.00 5.73
821 1199 3.775654 GCAGGAGGTGGAGACGGG 61.776 72.222 0.00 0.00 0.00 5.28
822 1200 3.775654 GGCAGGAGGTGGAGACGG 61.776 72.222 0.00 0.00 0.00 4.79
823 1201 2.681778 AGGCAGGAGGTGGAGACG 60.682 66.667 0.00 0.00 0.00 4.18
824 1202 2.716017 CGAGGCAGGAGGTGGAGAC 61.716 68.421 0.00 0.00 0.00 3.36
825 1203 2.363018 CGAGGCAGGAGGTGGAGA 60.363 66.667 0.00 0.00 0.00 3.71
826 1204 4.154347 GCGAGGCAGGAGGTGGAG 62.154 72.222 0.00 0.00 0.00 3.86
869 1247 4.605634 TAAACGTGCCGGCGTGGT 62.606 61.111 23.90 16.55 45.00 4.16
870 1248 4.079748 GTAAACGTGCCGGCGTGG 62.080 66.667 23.90 15.83 45.00 4.94
871 1249 4.079748 GGTAAACGTGCCGGCGTG 62.080 66.667 23.90 19.25 45.00 5.34
874 1252 4.710167 AGGGGTAAACGTGCCGGC 62.710 66.667 22.73 22.73 0.00 6.13
875 1253 2.744709 CAGGGGTAAACGTGCCGG 60.745 66.667 0.00 0.00 0.00 6.13
876 1254 3.428282 GCAGGGGTAAACGTGCCG 61.428 66.667 0.00 0.00 44.12 5.69
879 1257 1.301087 TCGTGCAGGGGTAAACGTG 60.301 57.895 6.56 0.00 37.32 4.49
880 1258 1.301165 GTCGTGCAGGGGTAAACGT 60.301 57.895 6.56 0.00 37.32 3.99
881 1259 2.030958 GGTCGTGCAGGGGTAAACG 61.031 63.158 6.56 0.00 37.38 3.60
882 1260 2.030958 CGGTCGTGCAGGGGTAAAC 61.031 63.158 6.56 0.00 0.00 2.01
883 1261 2.344500 CGGTCGTGCAGGGGTAAA 59.656 61.111 6.56 0.00 0.00 2.01
884 1262 3.697747 CCGGTCGTGCAGGGGTAA 61.698 66.667 6.56 0.00 0.00 2.85
888 1266 4.814294 GTAGCCGGTCGTGCAGGG 62.814 72.222 1.90 0.00 32.77 4.45
889 1267 4.063967 TGTAGCCGGTCGTGCAGG 62.064 66.667 1.90 0.00 35.42 4.85
890 1268 2.809601 GTGTAGCCGGTCGTGCAG 60.810 66.667 1.90 0.00 0.00 4.41
891 1269 4.710695 CGTGTAGCCGGTCGTGCA 62.711 66.667 1.90 0.00 0.00 4.57
902 1280 4.456253 AGCGTCGTCGGCGTGTAG 62.456 66.667 21.48 0.19 39.49 2.74
903 1281 4.450122 GAGCGTCGTCGGCGTGTA 62.450 66.667 21.48 0.00 39.49 2.90
955 1333 2.675772 GTCGTCACCTCCGACCCT 60.676 66.667 1.72 0.00 46.73 4.34
962 1340 1.507174 CCTTCCTCGTCGTCACCTC 59.493 63.158 0.00 0.00 0.00 3.85
963 1341 2.637383 GCCTTCCTCGTCGTCACCT 61.637 63.158 0.00 0.00 0.00 4.00
990 1368 2.433446 GATGCCATGGATCCGCCT 59.567 61.111 18.40 0.00 37.63 5.52
1018 1396 3.175710 ACCGTCCCCTTTGTGCCT 61.176 61.111 0.00 0.00 0.00 4.75
1033 1411 4.779733 TCTCTCCCCCGCCTCACC 62.780 72.222 0.00 0.00 0.00 4.02
1035 1413 2.364317 CTTCTCTCCCCCGCCTCA 60.364 66.667 0.00 0.00 0.00 3.86
1059 1437 1.530655 CCGCACAACCCCTCCTTTT 60.531 57.895 0.00 0.00 0.00 2.27
1216 1594 2.667536 AAGCTGAGTGCACGCCAG 60.668 61.111 27.12 27.12 45.94 4.85
1546 1924 3.099141 AGCATCGGAATGGGTTTGATTT 58.901 40.909 0.00 0.00 33.19 2.17
1641 2019 2.026636 TGACCATAAGTACCAACCTGCC 60.027 50.000 0.00 0.00 0.00 4.85
1787 2597 7.820872 CCAATCCTGCTTATCAGACAAAAATTT 59.179 33.333 0.00 0.00 45.72 1.82
1795 2605 4.754114 GTGATCCAATCCTGCTTATCAGAC 59.246 45.833 0.00 0.00 45.72 3.51
1801 2611 2.115427 TCCGTGATCCAATCCTGCTTA 58.885 47.619 0.00 0.00 0.00 3.09
1870 2768 7.754069 TCAATGTCAACAAACAAGATGAAAC 57.246 32.000 0.00 0.00 31.81 2.78
1923 2821 7.440523 TCCTCTTCATCTTTAGCTTCAAAAC 57.559 36.000 0.00 0.00 0.00 2.43
1925 2823 7.227156 AGTTCCTCTTCATCTTTAGCTTCAAA 58.773 34.615 0.00 0.00 0.00 2.69
2111 3034 4.041075 TCTCCTGTAATTTGTGTGGTGCTA 59.959 41.667 0.00 0.00 0.00 3.49
2114 3037 5.964958 ATTCTCCTGTAATTTGTGTGGTG 57.035 39.130 0.00 0.00 0.00 4.17
2255 3183 5.593909 ACCTGTCAAATCAACAATCAGTGAA 59.406 36.000 0.00 0.00 0.00 3.18
2300 3254 1.743252 GCGGACCTTCAGGAAGCTG 60.743 63.158 0.00 0.00 37.11 4.24
2551 3511 8.598202 AAAAAGTCTTAAGGTCACCCTAAAAA 57.402 30.769 1.85 0.00 41.56 1.94
2552 3512 9.346005 CTAAAAAGTCTTAAGGTCACCCTAAAA 57.654 33.333 1.85 0.00 41.56 1.52
2553 3513 8.496916 ACTAAAAAGTCTTAAGGTCACCCTAAA 58.503 33.333 1.85 0.00 41.56 1.85
2554 3514 8.037723 ACTAAAAAGTCTTAAGGTCACCCTAA 57.962 34.615 1.85 0.00 41.56 2.69
2555 3515 7.622502 ACTAAAAAGTCTTAAGGTCACCCTA 57.377 36.000 1.85 0.00 41.56 3.53
2556 3516 6.511017 ACTAAAAAGTCTTAAGGTCACCCT 57.489 37.500 1.85 0.00 45.63 4.34
2557 3517 6.769341 TCAACTAAAAAGTCTTAAGGTCACCC 59.231 38.462 1.85 0.00 0.00 4.61
2558 3518 7.797038 TCAACTAAAAAGTCTTAAGGTCACC 57.203 36.000 1.85 0.00 0.00 4.02
2559 3519 9.665264 CAATCAACTAAAAAGTCTTAAGGTCAC 57.335 33.333 1.85 0.00 0.00 3.67
2560 3520 8.349983 GCAATCAACTAAAAAGTCTTAAGGTCA 58.650 33.333 1.85 0.00 0.00 4.02
2924 3952 7.162082 ACCAGGAAAGTGCTATATATAACAGC 58.838 38.462 11.11 11.11 35.82 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.