Multiple sequence alignment - TraesCS4B01G149100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G149100 chr4B 100.000 2321 0 0 1 2321 220111022 220108702 0.000000e+00 4287
1 TraesCS4B01G149100 chr4B 92.779 637 46 0 1685 2321 352510911 352511547 0.000000e+00 922
2 TraesCS4B01G149100 chr4B 91.236 639 53 2 1685 2321 95033843 95033206 0.000000e+00 867
3 TraesCS4B01G149100 chr4B 94.064 219 13 0 1 219 352510706 352510924 1.330000e-87 333
4 TraesCS4B01G149100 chr4B 93.607 219 14 0 1 219 515267364 515267146 6.180000e-86 327
5 TraesCS4B01G149100 chr4B 92.694 219 16 0 1 219 104705008 104704790 1.340000e-82 316
6 TraesCS4B01G149100 chr5B 95.445 1471 66 1 215 1685 278242186 278243655 0.000000e+00 2344
7 TraesCS4B01G149100 chr5B 90.596 638 58 2 1685 2321 213789855 213790491 0.000000e+00 845
8 TraesCS4B01G149100 chrUn 95.254 1475 68 2 215 1688 66390117 66391590 0.000000e+00 2335
9 TraesCS4B01G149100 chr6B 95.309 1471 68 1 215 1685 47228416 47229885 0.000000e+00 2333
10 TraesCS4B01G149100 chr6B 90.744 1491 134 4 215 1702 680511729 680510240 0.000000e+00 1986
11 TraesCS4B01G149100 chr6B 92.151 637 50 0 1685 2321 662055952 662056588 0.000000e+00 900
12 TraesCS4B01G149100 chr6B 91.366 637 55 0 1685 2321 223609406 223610042 0.000000e+00 872
13 TraesCS4B01G149100 chr6B 90.866 635 57 1 1685 2319 528336525 528335892 0.000000e+00 850
14 TraesCS4B01G149100 chr6B 93.151 219 15 0 1 219 174285124 174285342 2.880000e-84 322
15 TraesCS4B01G149100 chr6B 93.151 219 15 0 1 219 483042556 483042338 2.880000e-84 322
16 TraesCS4B01G149100 chr6B 92.694 219 16 0 1 219 223609201 223609419 1.340000e-82 316
17 TraesCS4B01G149100 chr2B 93.031 1478 97 5 215 1689 128338703 128340177 0.000000e+00 2154
18 TraesCS4B01G149100 chr2B 92.465 637 48 0 1685 2321 683351674 683351038 0.000000e+00 911
19 TraesCS4B01G149100 chr4A 87.559 1479 167 8 215 1685 733775066 733776535 0.000000e+00 1696
20 TraesCS4B01G149100 chr6A 85.405 1480 197 17 215 1685 212164767 212166236 0.000000e+00 1519
21 TraesCS4B01G149100 chr7B 85.278 1474 204 11 215 1685 639287032 639285569 0.000000e+00 1507
22 TraesCS4B01G149100 chr7B 90.895 637 58 0 1685 2321 319280128 319279492 0.000000e+00 856
23 TraesCS4B01G149100 chr7B 92.694 219 16 0 1 219 292526172 292525954 1.340000e-82 316
24 TraesCS4B01G149100 chr3B 87.261 1201 147 5 215 1414 177915318 177914123 0.000000e+00 1365
25 TraesCS4B01G149100 chr3B 91.209 637 52 1 1685 2321 429148103 429147471 0.000000e+00 863
26 TraesCS4B01G149100 chr3B 93.151 219 15 0 1 219 249135706 249135924 2.880000e-84 322
27 TraesCS4B01G149100 chr3B 78.667 450 80 16 1240 1686 422349896 422349460 3.770000e-73 285
28 TraesCS4B01G149100 chr1B 92.694 219 16 0 1 219 266701300 266701518 1.340000e-82 316


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G149100 chr4B 220108702 220111022 2320 True 4287.0 4287 100.0000 1 2321 1 chr4B.!!$R3 2320
1 TraesCS4B01G149100 chr4B 95033206 95033843 637 True 867.0 867 91.2360 1685 2321 1 chr4B.!!$R1 636
2 TraesCS4B01G149100 chr4B 352510706 352511547 841 False 627.5 922 93.4215 1 2321 2 chr4B.!!$F1 2320
3 TraesCS4B01G149100 chr5B 278242186 278243655 1469 False 2344.0 2344 95.4450 215 1685 1 chr5B.!!$F2 1470
4 TraesCS4B01G149100 chr5B 213789855 213790491 636 False 845.0 845 90.5960 1685 2321 1 chr5B.!!$F1 636
5 TraesCS4B01G149100 chrUn 66390117 66391590 1473 False 2335.0 2335 95.2540 215 1688 1 chrUn.!!$F1 1473
6 TraesCS4B01G149100 chr6B 47228416 47229885 1469 False 2333.0 2333 95.3090 215 1685 1 chr6B.!!$F1 1470
7 TraesCS4B01G149100 chr6B 680510240 680511729 1489 True 1986.0 1986 90.7440 215 1702 1 chr6B.!!$R3 1487
8 TraesCS4B01G149100 chr6B 662055952 662056588 636 False 900.0 900 92.1510 1685 2321 1 chr6B.!!$F3 636
9 TraesCS4B01G149100 chr6B 528335892 528336525 633 True 850.0 850 90.8660 1685 2319 1 chr6B.!!$R2 634
10 TraesCS4B01G149100 chr6B 223609201 223610042 841 False 594.0 872 92.0300 1 2321 2 chr6B.!!$F4 2320
11 TraesCS4B01G149100 chr2B 128338703 128340177 1474 False 2154.0 2154 93.0310 215 1689 1 chr2B.!!$F1 1474
12 TraesCS4B01G149100 chr2B 683351038 683351674 636 True 911.0 911 92.4650 1685 2321 1 chr2B.!!$R1 636
13 TraesCS4B01G149100 chr4A 733775066 733776535 1469 False 1696.0 1696 87.5590 215 1685 1 chr4A.!!$F1 1470
14 TraesCS4B01G149100 chr6A 212164767 212166236 1469 False 1519.0 1519 85.4050 215 1685 1 chr6A.!!$F1 1470
15 TraesCS4B01G149100 chr7B 639285569 639287032 1463 True 1507.0 1507 85.2780 215 1685 1 chr7B.!!$R3 1470
16 TraesCS4B01G149100 chr7B 319279492 319280128 636 True 856.0 856 90.8950 1685 2321 1 chr7B.!!$R2 636
17 TraesCS4B01G149100 chr3B 177914123 177915318 1195 True 1365.0 1365 87.2610 215 1414 1 chr3B.!!$R1 1199
18 TraesCS4B01G149100 chr3B 429147471 429148103 632 True 863.0 863 91.2090 1685 2321 1 chr3B.!!$R3 636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.032815 GGAGTGCGCTTCCTAGATCC 59.967 60.0 19.98 7.8 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2061 0.179037 ATGGTGCACTCATCATCCCG 60.179 55.0 17.98 0.0 39.79 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.966339 AAATCCTTCCAGAAATTCATGATCA 57.034 32.000 0.00 0.00 0.00 2.92
80 81 3.326578 TGCACGGCACCCCTGTAT 61.327 61.111 0.00 0.00 31.71 2.29
81 82 2.513897 GCACGGCACCCCTGTATC 60.514 66.667 0.00 0.00 0.00 2.24
82 83 3.031417 GCACGGCACCCCTGTATCT 62.031 63.158 0.00 0.00 0.00 1.98
83 84 1.153369 CACGGCACCCCTGTATCTG 60.153 63.158 0.00 0.00 0.00 2.90
84 85 2.367202 ACGGCACCCCTGTATCTGG 61.367 63.158 0.00 0.00 0.00 3.86
85 86 2.367202 CGGCACCCCTGTATCTGGT 61.367 63.158 0.00 0.00 0.00 4.00
86 87 1.910580 CGGCACCCCTGTATCTGGTT 61.911 60.000 0.00 0.00 0.00 3.67
87 88 0.394352 GGCACCCCTGTATCTGGTTG 60.394 60.000 0.00 0.00 0.00 3.77
88 89 0.328258 GCACCCCTGTATCTGGTTGT 59.672 55.000 0.00 0.00 0.00 3.32
89 90 1.679032 GCACCCCTGTATCTGGTTGTC 60.679 57.143 0.00 0.00 0.00 3.18
90 91 1.909302 CACCCCTGTATCTGGTTGTCT 59.091 52.381 0.00 0.00 0.00 3.41
91 92 2.093447 CACCCCTGTATCTGGTTGTCTC 60.093 54.545 0.00 0.00 0.00 3.36
92 93 1.137086 CCCCTGTATCTGGTTGTCTCG 59.863 57.143 0.00 0.00 0.00 4.04
93 94 1.825474 CCCTGTATCTGGTTGTCTCGT 59.175 52.381 0.00 0.00 0.00 4.18
94 95 2.417379 CCCTGTATCTGGTTGTCTCGTG 60.417 54.545 0.00 0.00 0.00 4.35
95 96 2.417379 CCTGTATCTGGTTGTCTCGTGG 60.417 54.545 0.00 0.00 0.00 4.94
96 97 1.067142 TGTATCTGGTTGTCTCGTGGC 60.067 52.381 0.00 0.00 0.00 5.01
97 98 1.067142 GTATCTGGTTGTCTCGTGGCA 60.067 52.381 0.00 0.00 0.00 4.92
98 99 0.615331 ATCTGGTTGTCTCGTGGCAT 59.385 50.000 0.00 0.00 0.00 4.40
99 100 0.320683 TCTGGTTGTCTCGTGGCATG 60.321 55.000 0.00 0.00 0.00 4.06
100 101 1.915614 CTGGTTGTCTCGTGGCATGC 61.916 60.000 9.90 9.90 0.00 4.06
101 102 1.672356 GGTTGTCTCGTGGCATGCT 60.672 57.895 18.92 0.00 0.00 3.79
102 103 1.499056 GTTGTCTCGTGGCATGCTG 59.501 57.895 18.92 8.20 0.00 4.41
103 104 1.071299 TTGTCTCGTGGCATGCTGT 59.929 52.632 18.92 0.00 0.00 4.40
104 105 0.950555 TTGTCTCGTGGCATGCTGTC 60.951 55.000 18.92 7.39 0.00 3.51
105 106 2.125952 TCTCGTGGCATGCTGTCG 60.126 61.111 18.92 18.37 0.00 4.35
106 107 2.125952 CTCGTGGCATGCTGTCGA 60.126 61.111 18.92 21.18 0.00 4.20
107 108 2.432456 TCGTGGCATGCTGTCGAC 60.432 61.111 18.92 9.11 0.00 4.20
108 109 3.842126 CGTGGCATGCTGTCGACG 61.842 66.667 18.92 13.77 0.00 5.12
109 110 3.490759 GTGGCATGCTGTCGACGG 61.491 66.667 20.35 20.35 0.00 4.79
110 111 4.002506 TGGCATGCTGTCGACGGT 62.003 61.111 24.68 3.84 0.00 4.83
111 112 2.742372 GGCATGCTGTCGACGGTT 60.742 61.111 24.68 10.83 0.00 4.44
112 113 2.476051 GCATGCTGTCGACGGTTG 59.524 61.111 24.68 21.54 0.00 3.77
113 114 2.317609 GCATGCTGTCGACGGTTGT 61.318 57.895 24.68 9.09 0.00 3.32
114 115 1.841663 GCATGCTGTCGACGGTTGTT 61.842 55.000 24.68 5.58 0.00 2.83
115 116 0.110688 CATGCTGTCGACGGTTGTTG 60.111 55.000 24.68 13.33 0.00 3.33
116 117 0.531974 ATGCTGTCGACGGTTGTTGT 60.532 50.000 24.68 3.32 0.00 3.32
117 118 1.275657 GCTGTCGACGGTTGTTGTG 59.724 57.895 24.68 1.42 0.00 3.33
118 119 1.426041 GCTGTCGACGGTTGTTGTGT 61.426 55.000 24.68 0.00 0.00 3.72
119 120 1.003851 CTGTCGACGGTTGTTGTGTT 58.996 50.000 16.54 0.00 0.00 3.32
120 121 1.395608 CTGTCGACGGTTGTTGTGTTT 59.604 47.619 16.54 0.00 0.00 2.83
121 122 1.128878 TGTCGACGGTTGTTGTGTTTG 59.871 47.619 11.62 0.00 0.00 2.93
122 123 0.727970 TCGACGGTTGTTGTGTTTGG 59.272 50.000 0.00 0.00 0.00 3.28
123 124 0.448593 CGACGGTTGTTGTGTTTGGT 59.551 50.000 0.00 0.00 0.00 3.67
124 125 1.135632 CGACGGTTGTTGTGTTTGGTT 60.136 47.619 0.00 0.00 0.00 3.67
125 126 2.521996 GACGGTTGTTGTGTTTGGTTC 58.478 47.619 0.00 0.00 0.00 3.62
126 127 2.162809 GACGGTTGTTGTGTTTGGTTCT 59.837 45.455 0.00 0.00 0.00 3.01
127 128 2.094957 ACGGTTGTTGTGTTTGGTTCTG 60.095 45.455 0.00 0.00 0.00 3.02
128 129 2.162608 CGGTTGTTGTGTTTGGTTCTGA 59.837 45.455 0.00 0.00 0.00 3.27
129 130 3.181491 CGGTTGTTGTGTTTGGTTCTGAT 60.181 43.478 0.00 0.00 0.00 2.90
130 131 4.676723 CGGTTGTTGTGTTTGGTTCTGATT 60.677 41.667 0.00 0.00 0.00 2.57
131 132 4.803613 GGTTGTTGTGTTTGGTTCTGATTC 59.196 41.667 0.00 0.00 0.00 2.52
132 133 4.647424 TGTTGTGTTTGGTTCTGATTCC 57.353 40.909 0.00 0.00 0.00 3.01
133 134 4.019858 TGTTGTGTTTGGTTCTGATTCCA 58.980 39.130 0.00 0.00 0.00 3.53
134 135 4.464244 TGTTGTGTTTGGTTCTGATTCCAA 59.536 37.500 9.66 9.66 41.22 3.53
135 136 4.916983 TGTGTTTGGTTCTGATTCCAAG 57.083 40.909 12.28 0.00 43.28 3.61
136 137 3.068024 TGTGTTTGGTTCTGATTCCAAGC 59.932 43.478 16.08 16.08 43.28 4.01
137 138 3.319122 GTGTTTGGTTCTGATTCCAAGCT 59.681 43.478 20.24 0.00 43.28 3.74
138 139 3.318839 TGTTTGGTTCTGATTCCAAGCTG 59.681 43.478 20.24 0.00 43.28 4.24
139 140 2.205022 TGGTTCTGATTCCAAGCTGG 57.795 50.000 0.00 0.00 39.43 4.85
140 141 1.425066 TGGTTCTGATTCCAAGCTGGT 59.575 47.619 0.00 0.00 39.03 4.00
141 142 2.642311 TGGTTCTGATTCCAAGCTGGTA 59.358 45.455 0.00 0.00 39.03 3.25
142 143 3.266772 TGGTTCTGATTCCAAGCTGGTAT 59.733 43.478 0.00 0.00 39.03 2.73
143 144 4.263905 TGGTTCTGATTCCAAGCTGGTATT 60.264 41.667 0.00 0.00 39.03 1.89
144 145 4.336713 GGTTCTGATTCCAAGCTGGTATTC 59.663 45.833 0.00 0.00 39.03 1.75
145 146 3.797039 TCTGATTCCAAGCTGGTATTCG 58.203 45.455 0.00 0.00 39.03 3.34
146 147 3.450817 TCTGATTCCAAGCTGGTATTCGA 59.549 43.478 0.00 0.00 39.03 3.71
147 148 4.101585 TCTGATTCCAAGCTGGTATTCGAT 59.898 41.667 0.00 0.00 39.03 3.59
148 149 4.780815 TGATTCCAAGCTGGTATTCGATT 58.219 39.130 0.00 0.00 39.03 3.34
149 150 4.576053 TGATTCCAAGCTGGTATTCGATTG 59.424 41.667 0.00 0.00 39.03 2.67
150 151 3.904800 TCCAAGCTGGTATTCGATTGA 57.095 42.857 0.00 0.00 39.03 2.57
151 152 4.422073 TCCAAGCTGGTATTCGATTGAT 57.578 40.909 0.00 0.00 39.03 2.57
152 153 4.129380 TCCAAGCTGGTATTCGATTGATG 58.871 43.478 0.00 0.00 39.03 3.07
153 154 3.879295 CCAAGCTGGTATTCGATTGATGT 59.121 43.478 0.00 0.00 31.35 3.06
154 155 4.260907 CCAAGCTGGTATTCGATTGATGTG 60.261 45.833 0.00 0.00 31.35 3.21
155 156 4.406648 AGCTGGTATTCGATTGATGTGA 57.593 40.909 0.00 0.00 0.00 3.58
156 157 4.965814 AGCTGGTATTCGATTGATGTGAT 58.034 39.130 0.00 0.00 0.00 3.06
157 158 4.993584 AGCTGGTATTCGATTGATGTGATC 59.006 41.667 0.00 0.00 0.00 2.92
158 159 4.751600 GCTGGTATTCGATTGATGTGATCA 59.248 41.667 0.00 0.00 37.55 2.92
159 160 5.410746 GCTGGTATTCGATTGATGTGATCAT 59.589 40.000 0.00 0.00 39.39 2.45
160 161 6.072838 GCTGGTATTCGATTGATGTGATCATT 60.073 38.462 0.00 0.00 39.39 2.57
161 162 7.521099 GCTGGTATTCGATTGATGTGATCATTT 60.521 37.037 0.00 0.00 39.39 2.32
162 163 7.864686 TGGTATTCGATTGATGTGATCATTTC 58.135 34.615 0.00 0.00 39.39 2.17
163 164 7.011773 GGTATTCGATTGATGTGATCATTTCG 58.988 38.462 0.00 10.75 42.11 3.46
164 165 5.408204 TTCGATTGATGTGATCATTTCGG 57.592 39.130 0.00 0.00 41.58 4.30
165 166 4.441792 TCGATTGATGTGATCATTTCGGT 58.558 39.130 0.00 0.00 41.58 4.69
166 167 5.596845 TCGATTGATGTGATCATTTCGGTA 58.403 37.500 0.00 0.00 41.58 4.02
167 168 5.691754 TCGATTGATGTGATCATTTCGGTAG 59.308 40.000 0.00 0.00 41.58 3.18
168 169 5.463392 CGATTGATGTGATCATTTCGGTAGT 59.537 40.000 0.00 0.00 39.54 2.73
169 170 6.018751 CGATTGATGTGATCATTTCGGTAGTT 60.019 38.462 0.00 0.00 39.54 2.24
170 171 6.662414 TTGATGTGATCATTTCGGTAGTTC 57.338 37.500 0.00 0.00 39.39 3.01
171 172 5.977635 TGATGTGATCATTTCGGTAGTTCT 58.022 37.500 0.00 0.00 33.59 3.01
172 173 5.812127 TGATGTGATCATTTCGGTAGTTCTG 59.188 40.000 0.00 0.00 33.59 3.02
173 174 5.400066 TGTGATCATTTCGGTAGTTCTGA 57.600 39.130 0.00 0.00 0.00 3.27
174 175 5.977635 TGTGATCATTTCGGTAGTTCTGAT 58.022 37.500 0.00 0.00 0.00 2.90
175 176 6.042777 TGTGATCATTTCGGTAGTTCTGATC 58.957 40.000 0.00 0.00 39.46 2.92
176 177 5.463724 GTGATCATTTCGGTAGTTCTGATCC 59.536 44.000 0.00 0.00 38.67 3.36
177 178 5.363868 TGATCATTTCGGTAGTTCTGATCCT 59.636 40.000 0.00 0.00 38.67 3.24
178 179 6.549736 TGATCATTTCGGTAGTTCTGATCCTA 59.450 38.462 0.00 0.00 38.67 2.94
179 180 6.978674 TCATTTCGGTAGTTCTGATCCTAT 57.021 37.500 0.00 0.00 0.00 2.57
180 181 6.749139 TCATTTCGGTAGTTCTGATCCTATG 58.251 40.000 0.00 0.00 0.00 2.23
181 182 5.531122 TTTCGGTAGTTCTGATCCTATGG 57.469 43.478 0.00 0.00 0.00 2.74
182 183 4.180377 TCGGTAGTTCTGATCCTATGGT 57.820 45.455 0.00 0.00 0.00 3.55
183 184 3.889538 TCGGTAGTTCTGATCCTATGGTG 59.110 47.826 0.00 0.00 0.00 4.17
184 185 3.005897 CGGTAGTTCTGATCCTATGGTGG 59.994 52.174 0.00 0.00 0.00 4.61
185 186 4.223953 GGTAGTTCTGATCCTATGGTGGA 58.776 47.826 0.00 0.00 40.82 4.02
186 187 4.282195 GGTAGTTCTGATCCTATGGTGGAG 59.718 50.000 0.00 0.00 39.78 3.86
187 188 4.000928 AGTTCTGATCCTATGGTGGAGT 57.999 45.455 0.00 0.00 39.78 3.85
188 189 3.708631 AGTTCTGATCCTATGGTGGAGTG 59.291 47.826 0.00 0.00 39.78 3.51
189 190 2.042464 TCTGATCCTATGGTGGAGTGC 58.958 52.381 0.00 0.00 39.78 4.40
190 191 0.752658 TGATCCTATGGTGGAGTGCG 59.247 55.000 0.00 0.00 39.78 5.34
191 192 0.601311 GATCCTATGGTGGAGTGCGC 60.601 60.000 0.00 0.00 39.78 6.09
192 193 1.050988 ATCCTATGGTGGAGTGCGCT 61.051 55.000 9.73 0.00 39.78 5.92
193 194 1.221840 CCTATGGTGGAGTGCGCTT 59.778 57.895 9.73 0.00 0.00 4.68
194 195 0.811616 CCTATGGTGGAGTGCGCTTC 60.812 60.000 9.73 0.00 0.00 3.86
195 196 0.811616 CTATGGTGGAGTGCGCTTCC 60.812 60.000 20.31 20.31 0.00 3.46
196 197 1.264749 TATGGTGGAGTGCGCTTCCT 61.265 55.000 25.02 12.57 0.00 3.36
197 198 1.264749 ATGGTGGAGTGCGCTTCCTA 61.265 55.000 25.02 15.31 0.00 2.94
198 199 1.153549 GGTGGAGTGCGCTTCCTAG 60.154 63.158 25.02 0.00 0.00 3.02
199 200 1.605058 GGTGGAGTGCGCTTCCTAGA 61.605 60.000 25.02 8.83 0.00 2.43
200 201 0.461961 GTGGAGTGCGCTTCCTAGAT 59.538 55.000 25.02 0.00 0.00 1.98
201 202 0.747255 TGGAGTGCGCTTCCTAGATC 59.253 55.000 25.02 6.63 0.00 2.75
202 203 0.032815 GGAGTGCGCTTCCTAGATCC 59.967 60.000 19.98 7.80 0.00 3.36
203 204 0.318275 GAGTGCGCTTCCTAGATCCG 60.318 60.000 9.73 0.00 0.00 4.18
204 205 1.038130 AGTGCGCTTCCTAGATCCGT 61.038 55.000 9.73 0.00 0.00 4.69
205 206 0.666913 GTGCGCTTCCTAGATCCGTA 59.333 55.000 9.73 0.00 0.00 4.02
206 207 0.952280 TGCGCTTCCTAGATCCGTAG 59.048 55.000 9.73 0.00 0.00 3.51
207 208 1.236628 GCGCTTCCTAGATCCGTAGA 58.763 55.000 0.00 0.00 0.00 2.59
208 209 1.813786 GCGCTTCCTAGATCCGTAGAT 59.186 52.381 0.00 0.00 34.57 1.98
209 210 2.414824 GCGCTTCCTAGATCCGTAGATG 60.415 54.545 0.00 0.00 30.90 2.90
210 211 2.162608 CGCTTCCTAGATCCGTAGATGG 59.837 54.545 0.00 0.00 30.90 3.51
211 212 3.422796 GCTTCCTAGATCCGTAGATGGA 58.577 50.000 0.00 0.00 43.58 3.41
404 405 7.555087 TCTGTCAAAACAAAGGTGAATGATTT 58.445 30.769 0.00 0.00 34.24 2.17
435 436 4.462483 TGGAAAGCCATTATGAAGGTGAAC 59.538 41.667 0.00 0.00 39.92 3.18
514 515 0.107848 GGTCGATCCCGTTGGTGATT 60.108 55.000 0.00 0.00 37.05 2.57
626 627 5.470368 TGTAACGTTCTTTCAGAGGAGATG 58.530 41.667 2.82 0.00 0.00 2.90
802 805 4.205065 TGATGCAATTTTGGGTGGATTC 57.795 40.909 0.00 0.00 0.00 2.52
808 811 3.953712 ATTTTGGGTGGATTCGGAAAC 57.046 42.857 0.00 0.00 0.00 2.78
830 835 7.919385 AACCTGGCATTCCATTAAAGATTAT 57.081 32.000 0.00 0.00 42.51 1.28
1008 1014 3.058160 GTTGCCTGCATGCTCGGT 61.058 61.111 20.33 0.00 0.00 4.69
1181 1188 4.662468 TGCAAACACCTTTTGAATGCTA 57.338 36.364 0.91 0.00 39.52 3.49
1359 1373 0.256752 CTGGAGGGAATGGTGATGCA 59.743 55.000 0.00 0.00 0.00 3.96
1577 1596 1.071699 GTGCTCACAGTAGGTTTCCCA 59.928 52.381 0.00 0.00 0.00 4.37
1608 1627 4.465446 CCGCTCTCCCCTCTCCCA 62.465 72.222 0.00 0.00 0.00 4.37
1618 1637 2.797765 TCCCCTCTCCCATCTCATTCTA 59.202 50.000 0.00 0.00 0.00 2.10
1638 1658 9.655769 CATTCTATGGACTTGATTTGTATTTCG 57.344 33.333 0.00 0.00 0.00 3.46
1670 1690 4.277476 CAGTAATGGAAAGGGGTTATGCA 58.723 43.478 0.00 0.00 0.00 3.96
1855 1875 0.527113 TCGTCGAATTCGGGTAGCAA 59.473 50.000 26.47 3.46 40.29 3.91
1906 1926 3.855379 CGATCGTCACCGTATTTTTCTCA 59.145 43.478 7.03 0.00 35.01 3.27
1948 1968 2.301870 TCTTGCGGTTGAGTGTATCCTT 59.698 45.455 0.00 0.00 0.00 3.36
1954 1974 2.028385 GGTTGAGTGTATCCTTCACGGT 60.028 50.000 0.00 0.00 40.28 4.83
1956 1976 1.471287 TGAGTGTATCCTTCACGGTCG 59.529 52.381 0.00 0.00 40.28 4.79
2039 2061 7.448777 AGGTTCTCTTATTCCAAGAGTTTTTCC 59.551 37.037 12.43 9.30 43.18 3.13
2055 2077 0.107703 TTCCGGGATGATGAGTGCAC 60.108 55.000 9.40 9.40 0.00 4.57
2067 2089 4.077184 GTGCACCATCGTCCGGGA 62.077 66.667 5.22 0.00 0.00 5.14
2176 2198 1.670590 GCTCATCCTCCTCCATCGG 59.329 63.158 0.00 0.00 0.00 4.18
2180 2202 2.143419 ATCCTCCTCCATCGGTGGC 61.143 63.158 10.80 0.00 45.63 5.01
2225 2247 7.201911 CCTTTGGAATCAACCAGGGTATTATTC 60.202 40.741 9.92 9.92 41.19 1.75
2257 2279 5.080068 GCTGTTATCGCTGTTTTTACTGTC 58.920 41.667 0.00 0.00 0.00 3.51
2260 2282 0.863144 TCGCTGTTTTTACTGTCGCC 59.137 50.000 0.00 0.00 0.00 5.54
2274 2296 4.835927 CGCCAGATTTAGAGCGGT 57.164 55.556 0.00 0.00 44.64 5.68
2293 2315 2.106683 GTCTATGGCGCCGCTTTGT 61.107 57.895 23.90 5.73 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 2.367202 CCAGATACAGGGGTGCCGT 61.367 63.158 0.00 0.00 0.00 5.68
67 68 1.910580 AACCAGATACAGGGGTGCCG 61.911 60.000 0.00 0.00 34.51 5.69
68 69 0.394352 CAACCAGATACAGGGGTGCC 60.394 60.000 0.00 0.00 34.62 5.01
69 70 0.328258 ACAACCAGATACAGGGGTGC 59.672 55.000 0.00 0.00 46.01 5.01
71 72 2.188817 GAGACAACCAGATACAGGGGT 58.811 52.381 0.00 0.00 36.19 4.95
72 73 1.137086 CGAGACAACCAGATACAGGGG 59.863 57.143 0.00 0.00 0.00 4.79
73 74 1.825474 ACGAGACAACCAGATACAGGG 59.175 52.381 0.00 0.00 0.00 4.45
74 75 2.417379 CCACGAGACAACCAGATACAGG 60.417 54.545 0.00 0.00 0.00 4.00
75 76 2.881074 CCACGAGACAACCAGATACAG 58.119 52.381 0.00 0.00 0.00 2.74
76 77 1.067142 GCCACGAGACAACCAGATACA 60.067 52.381 0.00 0.00 0.00 2.29
77 78 1.067142 TGCCACGAGACAACCAGATAC 60.067 52.381 0.00 0.00 0.00 2.24
78 79 1.262417 TGCCACGAGACAACCAGATA 58.738 50.000 0.00 0.00 0.00 1.98
79 80 0.615331 ATGCCACGAGACAACCAGAT 59.385 50.000 0.00 0.00 0.00 2.90
80 81 0.320683 CATGCCACGAGACAACCAGA 60.321 55.000 0.00 0.00 0.00 3.86
81 82 1.915614 GCATGCCACGAGACAACCAG 61.916 60.000 6.36 0.00 0.00 4.00
82 83 1.965930 GCATGCCACGAGACAACCA 60.966 57.895 6.36 0.00 0.00 3.67
83 84 1.672356 AGCATGCCACGAGACAACC 60.672 57.895 15.66 0.00 0.00 3.77
84 85 1.230635 ACAGCATGCCACGAGACAAC 61.231 55.000 15.66 0.00 42.53 3.32
85 86 0.950555 GACAGCATGCCACGAGACAA 60.951 55.000 15.66 0.00 42.53 3.18
86 87 1.374631 GACAGCATGCCACGAGACA 60.375 57.895 15.66 0.00 42.53 3.41
87 88 2.447887 CGACAGCATGCCACGAGAC 61.448 63.158 15.66 0.00 42.53 3.36
88 89 2.125952 CGACAGCATGCCACGAGA 60.126 61.111 15.66 0.00 42.53 4.04
89 90 2.125952 TCGACAGCATGCCACGAG 60.126 61.111 21.30 8.84 42.53 4.18
90 91 2.432456 GTCGACAGCATGCCACGA 60.432 61.111 21.30 21.30 42.53 4.35
91 92 3.842126 CGTCGACAGCATGCCACG 61.842 66.667 15.66 17.22 42.53 4.94
92 93 3.490759 CCGTCGACAGCATGCCAC 61.491 66.667 15.66 5.16 42.53 5.01
93 94 3.529341 AACCGTCGACAGCATGCCA 62.529 57.895 15.66 0.00 42.53 4.92
94 95 2.742372 AACCGTCGACAGCATGCC 60.742 61.111 15.66 0.00 42.53 4.40
95 96 1.841663 AACAACCGTCGACAGCATGC 61.842 55.000 17.16 10.51 42.53 4.06
96 97 0.110688 CAACAACCGTCGACAGCATG 60.111 55.000 17.16 9.75 46.00 4.06
97 98 0.531974 ACAACAACCGTCGACAGCAT 60.532 50.000 17.16 0.00 0.00 3.79
98 99 1.153529 ACAACAACCGTCGACAGCA 60.154 52.632 17.16 0.00 0.00 4.41
99 100 1.275657 CACAACAACCGTCGACAGC 59.724 57.895 17.16 0.00 0.00 4.40
100 101 1.003851 AACACAACAACCGTCGACAG 58.996 50.000 17.16 6.83 0.00 3.51
101 102 1.128878 CAAACACAACAACCGTCGACA 59.871 47.619 17.16 0.00 0.00 4.35
102 103 1.530236 CCAAACACAACAACCGTCGAC 60.530 52.381 5.18 5.18 0.00 4.20
103 104 0.727970 CCAAACACAACAACCGTCGA 59.272 50.000 0.00 0.00 0.00 4.20
104 105 0.448593 ACCAAACACAACAACCGTCG 59.551 50.000 0.00 0.00 0.00 5.12
105 106 2.162809 AGAACCAAACACAACAACCGTC 59.837 45.455 0.00 0.00 0.00 4.79
106 107 2.094957 CAGAACCAAACACAACAACCGT 60.095 45.455 0.00 0.00 0.00 4.83
107 108 2.162608 TCAGAACCAAACACAACAACCG 59.837 45.455 0.00 0.00 0.00 4.44
108 109 3.859411 TCAGAACCAAACACAACAACC 57.141 42.857 0.00 0.00 0.00 3.77
109 110 4.803613 GGAATCAGAACCAAACACAACAAC 59.196 41.667 0.00 0.00 0.00 3.32
110 111 4.464244 TGGAATCAGAACCAAACACAACAA 59.536 37.500 0.00 0.00 32.93 2.83
111 112 4.019858 TGGAATCAGAACCAAACACAACA 58.980 39.130 0.00 0.00 32.93 3.33
112 113 4.647424 TGGAATCAGAACCAAACACAAC 57.353 40.909 0.00 0.00 32.93 3.32
113 114 4.441356 GCTTGGAATCAGAACCAAACACAA 60.441 41.667 11.84 0.00 44.03 3.33
114 115 3.068024 GCTTGGAATCAGAACCAAACACA 59.932 43.478 11.84 0.00 44.03 3.72
115 116 3.319122 AGCTTGGAATCAGAACCAAACAC 59.681 43.478 11.84 6.49 44.03 3.32
116 117 3.318839 CAGCTTGGAATCAGAACCAAACA 59.681 43.478 11.84 0.00 44.03 2.83
117 118 3.305608 CCAGCTTGGAATCAGAACCAAAC 60.306 47.826 11.84 8.64 44.03 2.93
118 119 2.892852 CCAGCTTGGAATCAGAACCAAA 59.107 45.455 11.84 0.51 44.03 3.28
119 120 2.158475 ACCAGCTTGGAATCAGAACCAA 60.158 45.455 8.91 10.70 40.96 3.67
120 121 1.425066 ACCAGCTTGGAATCAGAACCA 59.575 47.619 8.91 0.00 40.96 3.67
121 122 2.206576 ACCAGCTTGGAATCAGAACC 57.793 50.000 8.91 0.00 40.96 3.62
122 123 4.034510 CGAATACCAGCTTGGAATCAGAAC 59.965 45.833 8.91 0.00 40.96 3.01
123 124 4.081142 TCGAATACCAGCTTGGAATCAGAA 60.081 41.667 8.91 0.00 40.96 3.02
124 125 3.450817 TCGAATACCAGCTTGGAATCAGA 59.549 43.478 8.91 0.00 40.96 3.27
125 126 3.797039 TCGAATACCAGCTTGGAATCAG 58.203 45.455 8.91 0.00 40.96 2.90
126 127 3.904800 TCGAATACCAGCTTGGAATCA 57.095 42.857 8.91 0.00 40.96 2.57
127 128 4.816385 TCAATCGAATACCAGCTTGGAATC 59.184 41.667 8.91 0.00 40.96 2.52
128 129 4.780815 TCAATCGAATACCAGCTTGGAAT 58.219 39.130 8.91 0.00 40.96 3.01
129 130 4.214986 TCAATCGAATACCAGCTTGGAA 57.785 40.909 8.91 0.00 40.96 3.53
130 131 3.904800 TCAATCGAATACCAGCTTGGA 57.095 42.857 8.91 0.00 40.96 3.53
131 132 3.879295 ACATCAATCGAATACCAGCTTGG 59.121 43.478 0.00 1.16 45.02 3.61
132 133 4.571984 TCACATCAATCGAATACCAGCTTG 59.428 41.667 0.00 0.00 0.00 4.01
133 134 4.769688 TCACATCAATCGAATACCAGCTT 58.230 39.130 0.00 0.00 0.00 3.74
134 135 4.406648 TCACATCAATCGAATACCAGCT 57.593 40.909 0.00 0.00 0.00 4.24
135 136 4.751600 TGATCACATCAATCGAATACCAGC 59.248 41.667 0.00 0.00 36.11 4.85
136 137 7.430992 AATGATCACATCAATCGAATACCAG 57.569 36.000 0.00 0.00 43.50 4.00
137 138 7.307337 CGAAATGATCACATCAATCGAATACCA 60.307 37.037 14.92 0.00 46.54 3.25
138 139 7.011773 CGAAATGATCACATCAATCGAATACC 58.988 38.462 14.92 0.00 46.54 2.73
139 140 7.011773 CCGAAATGATCACATCAATCGAATAC 58.988 38.462 18.93 0.00 46.54 1.89
140 141 6.705825 ACCGAAATGATCACATCAATCGAATA 59.294 34.615 18.93 0.00 46.54 1.75
141 142 5.528690 ACCGAAATGATCACATCAATCGAAT 59.471 36.000 18.93 9.45 46.54 3.34
142 143 4.875536 ACCGAAATGATCACATCAATCGAA 59.124 37.500 18.93 0.00 46.54 3.71
143 144 4.441792 ACCGAAATGATCACATCAATCGA 58.558 39.130 18.93 0.00 46.54 3.59
144 145 4.801147 ACCGAAATGATCACATCAATCG 57.199 40.909 0.00 13.82 44.87 3.34
145 146 6.851222 ACTACCGAAATGATCACATCAATC 57.149 37.500 0.00 0.00 43.50 2.67
146 147 7.011763 CAGAACTACCGAAATGATCACATCAAT 59.988 37.037 0.00 0.00 43.50 2.57
147 148 6.313658 CAGAACTACCGAAATGATCACATCAA 59.686 38.462 0.00 0.00 43.50 2.57
148 149 5.812127 CAGAACTACCGAAATGATCACATCA 59.188 40.000 0.00 0.00 44.55 3.07
149 150 6.042777 TCAGAACTACCGAAATGATCACATC 58.957 40.000 0.00 0.00 35.50 3.06
150 151 5.977635 TCAGAACTACCGAAATGATCACAT 58.022 37.500 0.00 0.00 38.50 3.21
151 152 5.400066 TCAGAACTACCGAAATGATCACA 57.600 39.130 0.00 0.00 0.00 3.58
152 153 5.463724 GGATCAGAACTACCGAAATGATCAC 59.536 44.000 13.25 2.05 33.40 3.06
153 154 5.363868 AGGATCAGAACTACCGAAATGATCA 59.636 40.000 13.25 0.00 33.40 2.92
154 155 5.848406 AGGATCAGAACTACCGAAATGATC 58.152 41.667 4.76 4.76 33.40 2.92
155 156 5.878406 AGGATCAGAACTACCGAAATGAT 57.122 39.130 0.00 0.00 0.00 2.45
156 157 6.239317 CCATAGGATCAGAACTACCGAAATGA 60.239 42.308 0.00 0.00 0.00 2.57
157 158 5.928839 CCATAGGATCAGAACTACCGAAATG 59.071 44.000 0.00 0.00 0.00 2.32
158 159 5.602978 ACCATAGGATCAGAACTACCGAAAT 59.397 40.000 0.00 0.00 0.00 2.17
159 160 4.960469 ACCATAGGATCAGAACTACCGAAA 59.040 41.667 0.00 0.00 0.00 3.46
160 161 4.341235 CACCATAGGATCAGAACTACCGAA 59.659 45.833 0.00 0.00 0.00 4.30
161 162 3.889538 CACCATAGGATCAGAACTACCGA 59.110 47.826 0.00 0.00 0.00 4.69
162 163 3.005897 CCACCATAGGATCAGAACTACCG 59.994 52.174 0.00 0.00 0.00 4.02
163 164 4.223953 TCCACCATAGGATCAGAACTACC 58.776 47.826 0.00 0.00 31.23 3.18
164 165 4.896482 ACTCCACCATAGGATCAGAACTAC 59.104 45.833 0.00 0.00 36.99 2.73
165 166 4.895889 CACTCCACCATAGGATCAGAACTA 59.104 45.833 0.00 0.00 36.99 2.24
166 167 3.708631 CACTCCACCATAGGATCAGAACT 59.291 47.826 0.00 0.00 36.99 3.01
167 168 3.742640 GCACTCCACCATAGGATCAGAAC 60.743 52.174 0.00 0.00 36.99 3.01
168 169 2.435805 GCACTCCACCATAGGATCAGAA 59.564 50.000 0.00 0.00 36.99 3.02
169 170 2.042464 GCACTCCACCATAGGATCAGA 58.958 52.381 0.00 0.00 36.99 3.27
170 171 1.269988 CGCACTCCACCATAGGATCAG 60.270 57.143 0.00 0.00 36.99 2.90
171 172 0.752658 CGCACTCCACCATAGGATCA 59.247 55.000 0.00 0.00 36.99 2.92
172 173 0.601311 GCGCACTCCACCATAGGATC 60.601 60.000 0.30 0.00 36.99 3.36
173 174 1.050988 AGCGCACTCCACCATAGGAT 61.051 55.000 11.47 0.00 36.99 3.24
174 175 1.264749 AAGCGCACTCCACCATAGGA 61.265 55.000 11.47 0.00 36.00 2.94
175 176 0.811616 GAAGCGCACTCCACCATAGG 60.812 60.000 11.47 0.00 0.00 2.57
176 177 0.811616 GGAAGCGCACTCCACCATAG 60.812 60.000 20.36 0.00 0.00 2.23
177 178 1.220749 GGAAGCGCACTCCACCATA 59.779 57.895 20.36 0.00 0.00 2.74
178 179 1.264749 TAGGAAGCGCACTCCACCAT 61.265 55.000 25.25 11.03 0.00 3.55
179 180 1.888436 CTAGGAAGCGCACTCCACCA 61.888 60.000 25.25 12.25 0.00 4.17
180 181 1.153549 CTAGGAAGCGCACTCCACC 60.154 63.158 25.25 12.32 0.00 4.61
181 182 0.461961 ATCTAGGAAGCGCACTCCAC 59.538 55.000 25.25 4.86 0.00 4.02
182 183 0.747255 GATCTAGGAAGCGCACTCCA 59.253 55.000 25.25 13.29 0.00 3.86
183 184 0.032815 GGATCTAGGAAGCGCACTCC 59.967 60.000 18.27 18.27 0.00 3.85
184 185 0.318275 CGGATCTAGGAAGCGCACTC 60.318 60.000 11.47 5.42 0.00 3.51
185 186 1.038130 ACGGATCTAGGAAGCGCACT 61.038 55.000 11.47 7.41 0.00 4.40
186 187 0.666913 TACGGATCTAGGAAGCGCAC 59.333 55.000 11.47 2.54 0.00 5.34
187 188 0.952280 CTACGGATCTAGGAAGCGCA 59.048 55.000 11.47 0.00 0.00 6.09
188 189 1.236628 TCTACGGATCTAGGAAGCGC 58.763 55.000 0.00 0.00 0.00 5.92
189 190 2.162608 CCATCTACGGATCTAGGAAGCG 59.837 54.545 0.00 0.00 0.00 4.68
190 191 3.422796 TCCATCTACGGATCTAGGAAGC 58.577 50.000 0.00 0.00 0.00 3.86
200 201 0.188587 AGGCCAGATCCATCTACGGA 59.811 55.000 5.01 0.00 40.07 4.69
201 202 0.605589 GAGGCCAGATCCATCTACGG 59.394 60.000 5.01 0.00 34.85 4.02
202 203 0.242286 CGAGGCCAGATCCATCTACG 59.758 60.000 5.01 0.00 34.85 3.51
203 204 1.333177 ACGAGGCCAGATCCATCTAC 58.667 55.000 5.01 0.00 34.85 2.59
204 205 2.971901 TACGAGGCCAGATCCATCTA 57.028 50.000 5.01 0.00 34.85 1.98
205 206 2.175202 GATACGAGGCCAGATCCATCT 58.825 52.381 5.01 0.00 37.72 2.90
206 207 2.094286 CAGATACGAGGCCAGATCCATC 60.094 54.545 5.01 0.00 0.00 3.51
207 208 1.898472 CAGATACGAGGCCAGATCCAT 59.102 52.381 5.01 0.00 0.00 3.41
208 209 1.332195 CAGATACGAGGCCAGATCCA 58.668 55.000 5.01 0.00 0.00 3.41
209 210 1.333177 ACAGATACGAGGCCAGATCC 58.667 55.000 5.01 0.00 0.00 3.36
210 211 3.413327 TCTACAGATACGAGGCCAGATC 58.587 50.000 5.01 1.47 0.00 2.75
211 212 3.510531 TCTACAGATACGAGGCCAGAT 57.489 47.619 5.01 0.00 0.00 2.90
212 213 3.413327 GATCTACAGATACGAGGCCAGA 58.587 50.000 5.01 0.00 34.37 3.86
213 214 2.160615 CGATCTACAGATACGAGGCCAG 59.839 54.545 5.01 0.00 34.37 4.85
217 218 4.316645 TCCTTCGATCTACAGATACGAGG 58.683 47.826 12.13 12.13 36.38 4.63
435 436 6.812998 TCTTCTACCAACCATATAAAGGTCG 58.187 40.000 1.14 0.00 38.76 4.79
469 470 4.021104 CACCCTCGCTATATTCCAAGATCA 60.021 45.833 0.00 0.00 0.00 2.92
475 476 1.691976 CCACACCCTCGCTATATTCCA 59.308 52.381 0.00 0.00 0.00 3.53
505 506 8.027189 GTCCTTAAATGGTTTCTAATCACCAAC 58.973 37.037 0.00 0.00 46.29 3.77
514 515 6.243148 GGAACTGGTCCTTAAATGGTTTCTA 58.757 40.000 3.98 0.00 43.98 2.10
543 544 6.759827 CAGGGAAATTGCAAATTGAGAATAGG 59.240 38.462 4.04 0.00 0.00 2.57
802 805 4.413928 TGGAATGCCAGGTTTCCG 57.586 55.556 15.04 0.00 43.61 4.30
830 835 5.655974 TGGAATAGCTGCCACATAAAAATCA 59.344 36.000 0.00 0.00 0.00 2.57
904 910 4.279922 TCCACAGAATGAACACTTCGAGTA 59.720 41.667 0.00 0.00 39.69 2.59
1008 1014 9.093970 CATAAACTGTTCGGACATAAATCAGTA 57.906 33.333 0.00 0.00 34.72 2.74
1110 1116 2.290641 ACGACATGTCCAAATAGCCCAA 60.291 45.455 20.03 0.00 0.00 4.12
1181 1188 4.899352 AGAAAGGCACACATAGAGAAGT 57.101 40.909 0.00 0.00 0.00 3.01
1359 1373 5.230323 AGCATGCATCTTCTAGTGATGAT 57.770 39.130 21.98 14.41 42.68 2.45
1447 1463 1.267806 CAAGCGAGCACCAAAATGACT 59.732 47.619 0.00 0.00 0.00 3.41
1548 1567 1.079612 CTGTGAGCACTCGCCATCA 60.080 57.895 8.64 0.00 39.23 3.07
1577 1596 3.127533 GCGGGTTCAAGCATCGCT 61.128 61.111 3.36 0.00 42.56 4.93
1618 1637 6.834168 AACCGAAATACAAATCAAGTCCAT 57.166 33.333 0.00 0.00 0.00 3.41
1638 1658 4.035208 CCTTTCCATTACTGCGACATAACC 59.965 45.833 0.00 0.00 0.00 2.85
1855 1875 3.668386 GCTACCCAAAGCGCAAGT 58.332 55.556 11.47 1.18 41.68 3.16
1948 1968 0.947180 GCAAAGGCTTACGACCGTGA 60.947 55.000 0.00 0.00 36.96 4.35
2039 2061 0.179037 ATGGTGCACTCATCATCCCG 60.179 55.000 17.98 0.00 39.79 5.14
2055 2077 0.249489 GAGAACATCCCGGACGATGG 60.249 60.000 20.56 6.98 43.34 3.51
2176 2198 3.682292 GACGACCCCATGGAGCCAC 62.682 68.421 15.22 0.00 34.81 5.01
2180 2202 0.739813 GAAACGACGACCCCATGGAG 60.740 60.000 15.22 0.97 34.81 3.86
2257 2279 0.460284 ACACCGCTCTAAATCTGGCG 60.460 55.000 0.00 0.00 45.97 5.69
2260 2282 4.302455 CCATAGACACCGCTCTAAATCTG 58.698 47.826 0.00 0.00 0.00 2.90
2274 2296 2.106074 CAAAGCGGCGCCATAGACA 61.106 57.895 30.40 0.00 0.00 3.41
2293 2315 3.263425 GGATAATCCCCTCGATAAGCCAA 59.737 47.826 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.