Multiple sequence alignment - TraesCS4B01G146700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G146700 chr4B 100.000 2765 0 0 1 2765 209240360 209243124 0 5107
1 TraesCS4B01G146700 chr4B 98.425 381 6 0 1 381 86716688 86717068 0 671
2 TraesCS4B01G146700 chr4B 98.417 379 6 0 3 381 629537085 629537463 0 667
3 TraesCS4B01G146700 chr5A 98.491 2385 36 0 381 2765 16542737 16545121 0 4205
4 TraesCS4B01G146700 chr5A 98.321 2382 39 1 381 2762 420183886 420186266 0 4176
5 TraesCS4B01G146700 chr7B 98.407 2385 38 0 381 2765 742950555 742948171 0 4194
6 TraesCS4B01G146700 chr7B 98.030 2386 46 1 381 2765 716782789 716785174 0 4145
7 TraesCS4B01G146700 chr7A 98.407 2386 36 2 380 2765 60083120 60085503 0 4194
8 TraesCS4B01G146700 chr7A 98.407 2385 38 0 381 2765 60170584 60168200 0 4194
9 TraesCS4B01G146700 chr7A 97.917 384 8 0 1 384 78120811 78120428 0 665
10 TraesCS4B01G146700 chr2A 98.282 2386 40 1 381 2765 755478731 755481116 0 4178
11 TraesCS4B01G146700 chr1B 97.862 2385 50 1 381 2765 583563365 583560982 0 4120
12 TraesCS4B01G146700 chr6A 97.820 2385 52 0 381 2765 155855482 155857866 0 4117
13 TraesCS4B01G146700 chr6A 98.163 381 7 0 1 381 407651920 407652300 0 665
14 TraesCS4B01G146700 chrUn 98.163 381 7 0 1 381 298483052 298483432 0 665
15 TraesCS4B01G146700 chrUn 98.163 381 7 0 1 381 407742965 407743345 0 665
16 TraesCS4B01G146700 chr4A 98.163 381 7 0 1 381 48658827 48659207 0 665
17 TraesCS4B01G146700 chr1A 98.163 381 7 0 1 381 233432581 233432961 0 665
18 TraesCS4B01G146700 chr1A 97.917 384 8 0 1 384 233502597 233502214 0 665


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G146700 chr4B 209240360 209243124 2764 False 5107 5107 100.000 1 2765 1 chr4B.!!$F2 2764
1 TraesCS4B01G146700 chr5A 16542737 16545121 2384 False 4205 4205 98.491 381 2765 1 chr5A.!!$F1 2384
2 TraesCS4B01G146700 chr5A 420183886 420186266 2380 False 4176 4176 98.321 381 2762 1 chr5A.!!$F2 2381
3 TraesCS4B01G146700 chr7B 742948171 742950555 2384 True 4194 4194 98.407 381 2765 1 chr7B.!!$R1 2384
4 TraesCS4B01G146700 chr7B 716782789 716785174 2385 False 4145 4145 98.030 381 2765 1 chr7B.!!$F1 2384
5 TraesCS4B01G146700 chr7A 60083120 60085503 2383 False 4194 4194 98.407 380 2765 1 chr7A.!!$F1 2385
6 TraesCS4B01G146700 chr7A 60168200 60170584 2384 True 4194 4194 98.407 381 2765 1 chr7A.!!$R1 2384
7 TraesCS4B01G146700 chr2A 755478731 755481116 2385 False 4178 4178 98.282 381 2765 1 chr2A.!!$F1 2384
8 TraesCS4B01G146700 chr1B 583560982 583563365 2383 True 4120 4120 97.862 381 2765 1 chr1B.!!$R1 2384
9 TraesCS4B01G146700 chr6A 155855482 155857866 2384 False 4117 4117 97.820 381 2765 1 chr6A.!!$F1 2384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.030235 TCACGCGATGAATACCGGAG 59.97 55.0 15.93 0.00 33.02 4.63 F
47 48 0.030369 ACGCGATGAATACCGGAGTC 59.97 55.0 15.93 2.16 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 1383 0.95396 GGCGATTCCTTTCACACCGT 60.954 55.000 0.00 0.00 0.00 4.83 R
1921 1925 2.04033 CAGAGGAGCAGGATCCGAG 58.960 63.158 5.98 4.36 44.65 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.973899 CCTGTGTCTGTCCCCTCG 59.026 66.667 0.00 0.00 0.00 4.63
18 19 2.650116 CCTGTGTCTGTCCCCTCGG 61.650 68.421 0.00 0.00 0.00 4.63
19 20 2.603473 TGTGTCTGTCCCCTCGGG 60.603 66.667 0.00 0.00 46.11 5.14
30 31 4.201951 CCTCGGGGAAATGTCACG 57.798 61.111 0.00 0.00 33.58 4.35
31 32 2.106683 CCTCGGGGAAATGTCACGC 61.107 63.158 0.00 0.00 33.58 5.34
32 33 2.433491 TCGGGGAAATGTCACGCG 60.433 61.111 3.53 3.53 41.16 6.01
33 34 2.433491 CGGGGAAATGTCACGCGA 60.433 61.111 15.93 0.00 42.18 5.87
34 35 1.813753 CGGGGAAATGTCACGCGAT 60.814 57.895 15.93 0.00 42.18 4.58
35 36 1.721487 GGGGAAATGTCACGCGATG 59.279 57.895 15.93 7.85 0.00 3.84
36 37 0.742990 GGGGAAATGTCACGCGATGA 60.743 55.000 15.93 10.48 33.79 2.92
37 38 1.083489 GGGAAATGTCACGCGATGAA 58.917 50.000 15.93 4.77 39.72 2.57
38 39 1.670811 GGGAAATGTCACGCGATGAAT 59.329 47.619 15.93 6.80 39.72 2.57
39 40 2.869801 GGGAAATGTCACGCGATGAATA 59.130 45.455 15.93 6.26 39.72 1.75
40 41 3.303132 GGGAAATGTCACGCGATGAATAC 60.303 47.826 15.93 2.71 39.72 1.89
41 42 3.303132 GGAAATGTCACGCGATGAATACC 60.303 47.826 15.93 8.95 39.72 2.73
42 43 1.487482 ATGTCACGCGATGAATACCG 58.513 50.000 15.93 0.00 39.72 4.02
43 44 0.526739 TGTCACGCGATGAATACCGG 60.527 55.000 15.93 0.00 39.72 5.28
44 45 0.248743 GTCACGCGATGAATACCGGA 60.249 55.000 15.93 0.00 39.72 5.14
45 46 0.030235 TCACGCGATGAATACCGGAG 59.970 55.000 15.93 0.00 33.02 4.63
46 47 0.248907 CACGCGATGAATACCGGAGT 60.249 55.000 15.93 0.00 0.00 3.85
47 48 0.030369 ACGCGATGAATACCGGAGTC 59.970 55.000 15.93 2.16 0.00 3.36
48 49 0.663568 CGCGATGAATACCGGAGTCC 60.664 60.000 9.46 0.00 0.00 3.85
49 50 0.674534 GCGATGAATACCGGAGTCCT 59.325 55.000 9.46 0.00 0.00 3.85
50 51 1.603172 GCGATGAATACCGGAGTCCTG 60.603 57.143 9.46 2.81 0.00 3.86
51 52 1.681793 CGATGAATACCGGAGTCCTGT 59.318 52.381 9.46 11.33 0.00 4.00
52 53 2.100916 CGATGAATACCGGAGTCCTGTT 59.899 50.000 9.46 0.00 0.00 3.16
53 54 3.317149 CGATGAATACCGGAGTCCTGTTA 59.683 47.826 9.46 0.00 0.00 2.41
54 55 4.556898 CGATGAATACCGGAGTCCTGTTAG 60.557 50.000 9.46 0.00 0.00 2.34
55 56 2.429610 TGAATACCGGAGTCCTGTTAGC 59.570 50.000 9.46 2.56 0.00 3.09
56 57 1.411041 ATACCGGAGTCCTGTTAGCC 58.589 55.000 9.46 0.00 0.00 3.93
57 58 0.685458 TACCGGAGTCCTGTTAGCCC 60.685 60.000 9.46 0.00 0.00 5.19
58 59 2.494918 CGGAGTCCTGTTAGCCCG 59.505 66.667 7.77 0.00 0.00 6.13
59 60 2.187163 GGAGTCCTGTTAGCCCGC 59.813 66.667 0.41 0.00 0.00 6.13
60 61 2.359967 GGAGTCCTGTTAGCCCGCT 61.360 63.158 0.41 0.00 0.00 5.52
61 62 1.041447 GGAGTCCTGTTAGCCCGCTA 61.041 60.000 0.41 0.00 0.00 4.26
62 63 0.102663 GAGTCCTGTTAGCCCGCTAC 59.897 60.000 0.00 0.00 0.00 3.58
63 64 0.613853 AGTCCTGTTAGCCCGCTACA 60.614 55.000 0.00 0.00 0.00 2.74
64 65 0.179108 GTCCTGTTAGCCCGCTACAG 60.179 60.000 14.33 14.33 32.60 2.74
65 66 1.521681 CCTGTTAGCCCGCTACAGC 60.522 63.158 15.21 0.00 32.04 4.40
66 67 1.521681 CTGTTAGCCCGCTACAGCC 60.522 63.158 11.00 0.00 37.91 4.85
67 68 2.203029 GTTAGCCCGCTACAGCCC 60.203 66.667 0.00 0.00 37.91 5.19
68 69 3.845259 TTAGCCCGCTACAGCCCG 61.845 66.667 0.00 0.00 37.91 6.13
72 73 4.832608 CCCGCTACAGCCCGGTTC 62.833 72.222 0.00 0.00 42.87 3.62
73 74 4.077184 CCGCTACAGCCCGGTTCA 62.077 66.667 0.00 0.00 39.67 3.18
74 75 2.813908 CGCTACAGCCCGGTTCAC 60.814 66.667 0.00 0.00 37.91 3.18
75 76 2.436115 GCTACAGCCCGGTTCACC 60.436 66.667 0.00 0.00 34.31 4.02
85 86 2.047179 GGTTCACCGGAGTCCTGC 60.047 66.667 9.46 0.00 0.00 4.85
86 87 2.584391 GGTTCACCGGAGTCCTGCT 61.584 63.158 9.46 0.00 0.00 4.24
87 88 1.255667 GGTTCACCGGAGTCCTGCTA 61.256 60.000 9.46 0.00 0.00 3.49
88 89 0.173708 GTTCACCGGAGTCCTGCTAG 59.826 60.000 9.46 0.00 0.00 3.42
89 90 1.605058 TTCACCGGAGTCCTGCTAGC 61.605 60.000 9.46 8.10 0.00 3.42
90 91 2.760385 ACCGGAGTCCTGCTAGCC 60.760 66.667 9.46 0.00 0.00 3.93
91 92 3.541713 CCGGAGTCCTGCTAGCCC 61.542 72.222 13.29 3.65 0.00 5.19
92 93 2.759973 CGGAGTCCTGCTAGCCCA 60.760 66.667 13.29 0.00 0.00 5.36
93 94 2.790791 CGGAGTCCTGCTAGCCCAG 61.791 68.421 13.29 3.40 0.00 4.45
94 95 1.687493 GGAGTCCTGCTAGCCCAGT 60.687 63.158 13.29 0.00 0.00 4.00
95 96 1.519719 GAGTCCTGCTAGCCCAGTG 59.480 63.158 13.29 0.00 0.00 3.66
96 97 2.124942 GTCCTGCTAGCCCAGTGC 60.125 66.667 13.29 0.00 41.71 4.40
105 106 2.437359 GCCCAGTGCTACAGCCTG 60.437 66.667 10.84 10.84 41.18 4.85
109 110 3.869623 CAGTGCTACAGCCTGGATT 57.130 52.632 0.00 0.00 41.18 3.01
110 111 1.661341 CAGTGCTACAGCCTGGATTC 58.339 55.000 0.00 0.00 41.18 2.52
111 112 1.065926 CAGTGCTACAGCCTGGATTCA 60.066 52.381 0.00 0.00 41.18 2.57
112 113 1.065854 AGTGCTACAGCCTGGATTCAC 60.066 52.381 0.00 0.00 41.18 3.18
113 114 1.065854 GTGCTACAGCCTGGATTCACT 60.066 52.381 0.00 0.00 41.18 3.41
114 115 1.208052 TGCTACAGCCTGGATTCACTC 59.792 52.381 0.00 0.00 41.18 3.51
115 116 1.804372 GCTACAGCCTGGATTCACTCG 60.804 57.143 0.00 0.00 34.31 4.18
116 117 0.175760 TACAGCCTGGATTCACTCGC 59.824 55.000 0.00 0.00 0.00 5.03
117 118 1.220206 CAGCCTGGATTCACTCGCT 59.780 57.895 0.00 0.00 0.00 4.93
118 119 1.088340 CAGCCTGGATTCACTCGCTG 61.088 60.000 0.00 0.00 37.93 5.18
119 120 1.219124 GCCTGGATTCACTCGCTGA 59.781 57.895 0.00 0.00 0.00 4.26
120 121 0.179062 GCCTGGATTCACTCGCTGAT 60.179 55.000 0.00 0.00 0.00 2.90
121 122 1.579698 CCTGGATTCACTCGCTGATG 58.420 55.000 0.00 0.00 0.00 3.07
122 123 1.137675 CCTGGATTCACTCGCTGATGA 59.862 52.381 0.00 0.00 0.00 2.92
123 124 2.200067 CTGGATTCACTCGCTGATGAC 58.800 52.381 0.00 0.00 0.00 3.06
124 125 1.134699 TGGATTCACTCGCTGATGACC 60.135 52.381 0.00 0.00 0.00 4.02
125 126 1.203928 GATTCACTCGCTGATGACCG 58.796 55.000 0.00 0.00 0.00 4.79
126 127 0.817654 ATTCACTCGCTGATGACCGA 59.182 50.000 0.00 0.00 0.00 4.69
127 128 0.109272 TTCACTCGCTGATGACCGAC 60.109 55.000 0.00 0.00 0.00 4.79
128 129 1.212751 CACTCGCTGATGACCGACA 59.787 57.895 0.00 0.00 0.00 4.35
129 130 1.073216 CACTCGCTGATGACCGACAC 61.073 60.000 0.00 0.00 0.00 3.67
130 131 1.212751 CTCGCTGATGACCGACACA 59.787 57.895 0.00 0.00 0.00 3.72
131 132 0.179127 CTCGCTGATGACCGACACAT 60.179 55.000 0.00 0.00 0.00 3.21
132 133 0.246360 TCGCTGATGACCGACACATT 59.754 50.000 0.00 0.00 0.00 2.71
133 134 0.647410 CGCTGATGACCGACACATTC 59.353 55.000 0.00 0.00 0.00 2.67
143 144 3.159298 GACACATTCGATGCTGGGT 57.841 52.632 0.00 0.00 0.00 4.51
144 145 1.009829 GACACATTCGATGCTGGGTC 58.990 55.000 9.05 9.05 38.51 4.46
145 146 0.324614 ACACATTCGATGCTGGGTCA 59.675 50.000 0.00 0.00 0.00 4.02
146 147 1.065199 ACACATTCGATGCTGGGTCAT 60.065 47.619 0.00 0.00 0.00 3.06
147 148 1.332686 CACATTCGATGCTGGGTCATG 59.667 52.381 0.00 0.00 0.00 3.07
148 149 0.949397 CATTCGATGCTGGGTCATGG 59.051 55.000 0.00 0.00 0.00 3.66
149 150 0.839277 ATTCGATGCTGGGTCATGGA 59.161 50.000 0.00 0.00 30.93 3.41
150 151 0.839277 TTCGATGCTGGGTCATGGAT 59.161 50.000 0.00 0.00 32.57 3.41
151 152 0.107268 TCGATGCTGGGTCATGGATG 59.893 55.000 0.00 0.00 0.00 3.51
152 153 1.512996 CGATGCTGGGTCATGGATGC 61.513 60.000 0.00 0.00 0.00 3.91
153 154 1.152610 ATGCTGGGTCATGGATGCC 60.153 57.895 0.00 0.00 0.00 4.40
154 155 1.652187 ATGCTGGGTCATGGATGCCT 61.652 55.000 0.00 0.00 0.00 4.75
155 156 1.826921 GCTGGGTCATGGATGCCTG 60.827 63.158 0.00 0.00 0.00 4.85
156 157 1.611419 CTGGGTCATGGATGCCTGT 59.389 57.895 0.00 0.00 0.00 4.00
157 158 0.465097 CTGGGTCATGGATGCCTGTC 60.465 60.000 0.00 0.00 0.00 3.51
158 159 1.152881 GGGTCATGGATGCCTGTCC 60.153 63.158 0.00 0.00 38.81 4.02
159 160 1.152881 GGTCATGGATGCCTGTCCC 60.153 63.158 0.00 0.00 37.48 4.46
160 161 1.639635 GGTCATGGATGCCTGTCCCT 61.640 60.000 0.00 0.00 37.48 4.20
161 162 0.465097 GTCATGGATGCCTGTCCCTG 60.465 60.000 0.00 0.00 37.48 4.45
162 163 0.915872 TCATGGATGCCTGTCCCTGT 60.916 55.000 0.00 0.00 37.48 4.00
163 164 0.839277 CATGGATGCCTGTCCCTGTA 59.161 55.000 0.00 0.00 37.48 2.74
164 165 1.212688 CATGGATGCCTGTCCCTGTAA 59.787 52.381 0.00 0.00 37.48 2.41
165 166 0.911769 TGGATGCCTGTCCCTGTAAG 59.088 55.000 0.00 0.00 37.48 2.34
166 167 0.912486 GGATGCCTGTCCCTGTAAGT 59.088 55.000 0.00 0.00 31.82 2.24
167 168 1.282157 GGATGCCTGTCCCTGTAAGTT 59.718 52.381 0.00 0.00 31.82 2.66
168 169 2.290960 GGATGCCTGTCCCTGTAAGTTT 60.291 50.000 0.00 0.00 31.82 2.66
169 170 2.270352 TGCCTGTCCCTGTAAGTTTG 57.730 50.000 0.00 0.00 0.00 2.93
170 171 1.493022 TGCCTGTCCCTGTAAGTTTGT 59.507 47.619 0.00 0.00 0.00 2.83
171 172 1.880027 GCCTGTCCCTGTAAGTTTGTG 59.120 52.381 0.00 0.00 0.00 3.33
172 173 1.880027 CCTGTCCCTGTAAGTTTGTGC 59.120 52.381 0.00 0.00 0.00 4.57
173 174 1.880027 CTGTCCCTGTAAGTTTGTGCC 59.120 52.381 0.00 0.00 0.00 5.01
174 175 1.213182 TGTCCCTGTAAGTTTGTGCCA 59.787 47.619 0.00 0.00 0.00 4.92
175 176 1.607148 GTCCCTGTAAGTTTGTGCCAC 59.393 52.381 0.00 0.00 0.00 5.01
176 177 1.493022 TCCCTGTAAGTTTGTGCCACT 59.507 47.619 0.00 0.00 0.00 4.00
177 178 2.092103 TCCCTGTAAGTTTGTGCCACTT 60.092 45.455 0.00 0.00 38.13 3.16
178 179 2.693074 CCCTGTAAGTTTGTGCCACTTT 59.307 45.455 0.00 0.00 35.95 2.66
179 180 3.490761 CCCTGTAAGTTTGTGCCACTTTG 60.491 47.826 0.00 0.00 35.95 2.77
180 181 3.490761 CCTGTAAGTTTGTGCCACTTTGG 60.491 47.826 0.00 0.00 41.55 3.28
181 182 2.428890 TGTAAGTTTGTGCCACTTTGGG 59.571 45.455 0.00 0.00 38.19 4.12
182 183 1.567357 AAGTTTGTGCCACTTTGGGT 58.433 45.000 0.00 0.00 38.19 4.51
183 184 1.567357 AGTTTGTGCCACTTTGGGTT 58.433 45.000 0.00 0.00 38.19 4.11
184 185 1.905894 AGTTTGTGCCACTTTGGGTTT 59.094 42.857 0.00 0.00 38.19 3.27
185 186 3.100671 AGTTTGTGCCACTTTGGGTTTA 58.899 40.909 0.00 0.00 38.19 2.01
186 187 3.118920 AGTTTGTGCCACTTTGGGTTTAC 60.119 43.478 0.00 0.00 38.19 2.01
187 188 1.025812 TGTGCCACTTTGGGTTTACG 58.974 50.000 0.00 0.00 38.19 3.18
188 189 1.310904 GTGCCACTTTGGGTTTACGA 58.689 50.000 0.00 0.00 38.19 3.43
189 190 1.002142 GTGCCACTTTGGGTTTACGAC 60.002 52.381 0.00 0.00 38.19 4.34
190 191 1.134037 TGCCACTTTGGGTTTACGACT 60.134 47.619 0.00 0.00 38.19 4.18
191 192 2.104451 TGCCACTTTGGGTTTACGACTA 59.896 45.455 0.00 0.00 38.19 2.59
192 193 2.740447 GCCACTTTGGGTTTACGACTAG 59.260 50.000 0.00 0.00 38.19 2.57
193 194 2.740447 CCACTTTGGGTTTACGACTAGC 59.260 50.000 0.00 0.00 32.67 3.42
194 195 2.740447 CACTTTGGGTTTACGACTAGCC 59.260 50.000 0.00 0.00 0.00 3.93
195 196 2.369532 ACTTTGGGTTTACGACTAGCCA 59.630 45.455 0.00 0.00 39.97 4.75
196 197 3.008704 ACTTTGGGTTTACGACTAGCCAT 59.991 43.478 7.05 0.00 41.19 4.40
197 198 2.684001 TGGGTTTACGACTAGCCATG 57.316 50.000 0.00 0.00 37.03 3.66
198 199 1.903860 TGGGTTTACGACTAGCCATGT 59.096 47.619 0.00 0.00 37.03 3.21
199 200 2.093869 TGGGTTTACGACTAGCCATGTC 60.094 50.000 0.00 0.00 37.03 3.06
200 201 2.093869 GGGTTTACGACTAGCCATGTCA 60.094 50.000 0.00 0.00 34.37 3.58
201 202 3.187700 GGTTTACGACTAGCCATGTCAG 58.812 50.000 0.00 0.00 34.37 3.51
202 203 2.579207 TTACGACTAGCCATGTCAGC 57.421 50.000 0.00 0.00 34.37 4.26
203 204 0.744874 TACGACTAGCCATGTCAGCC 59.255 55.000 0.00 0.00 34.37 4.85
204 205 1.227380 CGACTAGCCATGTCAGCCC 60.227 63.158 0.00 0.00 34.37 5.19
205 206 1.227380 GACTAGCCATGTCAGCCCG 60.227 63.158 0.00 0.00 34.80 6.13
206 207 2.109799 CTAGCCATGTCAGCCCGG 59.890 66.667 0.00 0.00 0.00 5.73
207 208 3.466791 CTAGCCATGTCAGCCCGGG 62.467 68.421 19.09 19.09 0.00 5.73
218 219 3.161557 GCCCGGGCTCCTTATCAT 58.838 61.111 38.76 0.00 38.26 2.45
219 220 2.372852 GCCCGGGCTCCTTATCATA 58.627 57.895 38.76 0.00 38.26 2.15
220 221 0.912486 GCCCGGGCTCCTTATCATAT 59.088 55.000 38.76 0.00 38.26 1.78
221 222 1.407437 GCCCGGGCTCCTTATCATATG 60.407 57.143 38.76 0.00 38.26 1.78
222 223 1.210478 CCCGGGCTCCTTATCATATGG 59.790 57.143 8.08 0.00 0.00 2.74
223 224 2.187958 CCGGGCTCCTTATCATATGGA 58.812 52.381 2.13 0.00 0.00 3.41
224 225 2.774234 CCGGGCTCCTTATCATATGGAT 59.226 50.000 2.13 0.00 40.14 3.41
225 226 3.432749 CCGGGCTCCTTATCATATGGATG 60.433 52.174 2.13 0.00 36.72 3.51
226 227 3.549794 GGGCTCCTTATCATATGGATGC 58.450 50.000 2.13 6.23 36.72 3.91
227 228 3.054139 GGGCTCCTTATCATATGGATGCA 60.054 47.826 16.23 0.00 36.72 3.96
228 229 4.568380 GGGCTCCTTATCATATGGATGCAA 60.568 45.833 16.23 0.00 36.72 4.08
229 230 4.639310 GGCTCCTTATCATATGGATGCAAG 59.361 45.833 16.23 0.26 36.72 4.01
230 231 4.096081 GCTCCTTATCATATGGATGCAAGC 59.904 45.833 2.13 2.97 36.72 4.01
231 232 4.256110 TCCTTATCATATGGATGCAAGCG 58.744 43.478 2.13 0.00 36.72 4.68
232 233 4.020307 TCCTTATCATATGGATGCAAGCGA 60.020 41.667 2.13 0.00 36.72 4.93
233 234 4.093998 CCTTATCATATGGATGCAAGCGAC 59.906 45.833 2.13 0.00 36.72 5.19
234 235 2.618442 TCATATGGATGCAAGCGACA 57.382 45.000 2.13 0.00 32.62 4.35
235 236 2.212652 TCATATGGATGCAAGCGACAC 58.787 47.619 2.13 0.00 32.62 3.67
236 237 2.158914 TCATATGGATGCAAGCGACACT 60.159 45.455 2.13 0.00 32.62 3.55
237 238 3.069443 TCATATGGATGCAAGCGACACTA 59.931 43.478 2.13 0.00 32.62 2.74
238 239 2.627515 ATGGATGCAAGCGACACTAT 57.372 45.000 0.00 0.00 0.00 2.12
239 240 1.939974 TGGATGCAAGCGACACTATC 58.060 50.000 0.00 0.00 0.00 2.08
251 252 2.962834 CGACACTATCGTATACGTGTGC 59.037 50.000 29.18 23.74 46.25 4.57
252 253 3.294943 GACACTATCGTATACGTGTGCC 58.705 50.000 29.18 22.27 40.37 5.01
253 254 2.684374 ACACTATCGTATACGTGTGCCA 59.316 45.455 29.18 13.78 38.99 4.92
254 255 3.129113 ACACTATCGTATACGTGTGCCAA 59.871 43.478 29.18 13.22 38.99 4.52
255 256 4.106909 CACTATCGTATACGTGTGCCAAA 58.893 43.478 23.67 3.38 40.80 3.28
256 257 4.563580 CACTATCGTATACGTGTGCCAAAA 59.436 41.667 23.67 2.64 40.80 2.44
257 258 4.802039 ACTATCGTATACGTGTGCCAAAAG 59.198 41.667 23.67 10.02 40.80 2.27
258 259 3.300852 TCGTATACGTGTGCCAAAAGA 57.699 42.857 23.67 0.00 40.80 2.52
259 260 2.988493 TCGTATACGTGTGCCAAAAGAC 59.012 45.455 23.67 0.00 40.80 3.01
260 261 2.222420 CGTATACGTGTGCCAAAAGACG 60.222 50.000 17.16 0.00 42.11 4.18
261 262 0.515564 ATACGTGTGCCAAAAGACGC 59.484 50.000 0.00 0.00 40.22 5.19
262 263 0.810426 TACGTGTGCCAAAAGACGCA 60.810 50.000 0.00 0.00 40.22 5.24
263 264 1.063327 CGTGTGCCAAAAGACGCAA 59.937 52.632 0.00 0.00 36.60 4.85
264 265 0.524392 CGTGTGCCAAAAGACGCAAA 60.524 50.000 0.00 0.00 36.60 3.68
265 266 0.920664 GTGTGCCAAAAGACGCAAAC 59.079 50.000 0.00 0.00 36.14 2.93
267 268 1.064946 TGCCAAAAGACGCAAACGG 59.935 52.632 0.00 0.00 46.04 4.44
268 269 1.065109 GCCAAAAGACGCAAACGGT 59.935 52.632 0.00 0.00 46.04 4.83
269 270 0.933047 GCCAAAAGACGCAAACGGTC 60.933 55.000 0.00 0.00 46.04 4.79
270 271 0.317519 CCAAAAGACGCAAACGGTCC 60.318 55.000 0.00 0.00 46.04 4.46
271 272 0.317519 CAAAAGACGCAAACGGTCCC 60.318 55.000 0.00 0.00 46.04 4.46
272 273 1.778027 AAAAGACGCAAACGGTCCCG 61.778 55.000 3.76 3.76 46.04 5.14
273 274 4.675029 AGACGCAAACGGTCCCGG 62.675 66.667 10.91 0.00 46.04 5.73
278 279 2.907917 CAAACGGTCCCGGGCAAA 60.908 61.111 18.49 0.00 44.69 3.68
279 280 2.596338 AAACGGTCCCGGGCAAAG 60.596 61.111 18.49 9.68 44.69 2.77
280 281 4.653888 AACGGTCCCGGGCAAAGG 62.654 66.667 18.49 5.40 44.69 3.11
282 283 3.708544 CGGTCCCGGGCAAAGGTA 61.709 66.667 18.49 0.00 35.56 3.08
283 284 2.758434 GGTCCCGGGCAAAGGTAA 59.242 61.111 18.49 0.00 0.00 2.85
284 285 1.378119 GGTCCCGGGCAAAGGTAAG 60.378 63.158 18.49 0.00 0.00 2.34
285 286 1.378119 GTCCCGGGCAAAGGTAAGG 60.378 63.158 18.49 0.00 0.00 2.69
286 287 2.754254 CCCGGGCAAAGGTAAGGC 60.754 66.667 8.08 0.00 0.00 4.35
287 288 3.131478 CCGGGCAAAGGTAAGGCG 61.131 66.667 0.00 0.00 0.00 5.52
288 289 2.046700 CGGGCAAAGGTAAGGCGA 60.047 61.111 0.00 0.00 0.00 5.54
289 290 2.396157 CGGGCAAAGGTAAGGCGAC 61.396 63.158 0.00 0.00 0.00 5.19
290 291 1.302993 GGGCAAAGGTAAGGCGACA 60.303 57.895 0.00 0.00 0.00 4.35
291 292 1.583495 GGGCAAAGGTAAGGCGACAC 61.583 60.000 0.00 0.00 0.00 3.67
292 293 1.583495 GGCAAAGGTAAGGCGACACC 61.583 60.000 0.00 0.00 39.61 4.16
293 294 1.583495 GCAAAGGTAAGGCGACACCC 61.583 60.000 0.00 0.00 40.58 4.61
294 295 1.004200 AAAGGTAAGGCGACACCCG 60.004 57.895 0.00 0.00 40.58 5.28
295 296 1.761500 AAAGGTAAGGCGACACCCGT 61.761 55.000 0.00 0.00 40.58 5.28
296 297 2.433664 GGTAAGGCGACACCCGTG 60.434 66.667 0.00 0.00 40.58 4.94
297 298 2.433664 GTAAGGCGACACCCGTGG 60.434 66.667 0.00 0.00 40.58 4.94
298 299 3.697747 TAAGGCGACACCCGTGGG 61.698 66.667 2.58 2.58 40.58 4.61
301 302 4.404098 GGCGACACCCGTGGGAAT 62.404 66.667 13.01 0.00 41.15 3.01
302 303 2.580276 GCGACACCCGTGGGAATA 59.420 61.111 13.01 0.00 41.15 1.75
303 304 1.812507 GCGACACCCGTGGGAATAC 60.813 63.158 13.01 0.00 41.15 1.89
304 305 1.895238 CGACACCCGTGGGAATACT 59.105 57.895 13.01 0.00 38.96 2.12
305 306 0.459585 CGACACCCGTGGGAATACTG 60.460 60.000 13.01 1.07 38.96 2.74
306 307 0.611714 GACACCCGTGGGAATACTGT 59.388 55.000 13.01 4.77 38.96 3.55
307 308 0.323629 ACACCCGTGGGAATACTGTG 59.676 55.000 13.01 0.00 38.96 3.66
308 309 1.024579 CACCCGTGGGAATACTGTGC 61.025 60.000 13.01 0.00 38.96 4.57
309 310 1.298340 CCCGTGGGAATACTGTGCA 59.702 57.895 0.00 0.00 37.50 4.57
310 311 0.107214 CCCGTGGGAATACTGTGCAT 60.107 55.000 0.00 0.00 37.50 3.96
311 312 1.016627 CCGTGGGAATACTGTGCATG 58.983 55.000 0.00 0.00 0.00 4.06
312 313 1.406751 CCGTGGGAATACTGTGCATGA 60.407 52.381 0.00 0.00 0.00 3.07
313 314 1.935873 CGTGGGAATACTGTGCATGAG 59.064 52.381 0.00 0.00 0.00 2.90
314 315 2.292267 GTGGGAATACTGTGCATGAGG 58.708 52.381 0.00 0.00 0.00 3.86
315 316 1.312815 GGGAATACTGTGCATGAGGC 58.687 55.000 0.00 0.00 45.13 4.70
316 317 1.312815 GGAATACTGTGCATGAGGCC 58.687 55.000 0.00 0.00 43.89 5.19
317 318 0.940126 GAATACTGTGCATGAGGCCG 59.060 55.000 0.00 0.00 43.89 6.13
318 319 1.097547 AATACTGTGCATGAGGCCGC 61.098 55.000 0.00 0.00 43.89 6.53
319 320 2.256072 ATACTGTGCATGAGGCCGCA 62.256 55.000 12.99 12.99 43.89 5.69
320 321 2.462125 TACTGTGCATGAGGCCGCAA 62.462 55.000 14.96 0.00 43.89 4.85
321 322 2.596923 TGTGCATGAGGCCGCAAA 60.597 55.556 14.96 0.09 43.89 3.68
322 323 2.180017 GTGCATGAGGCCGCAAAG 59.820 61.111 14.96 10.69 43.89 2.77
323 324 2.282391 TGCATGAGGCCGCAAAGT 60.282 55.556 14.96 0.00 43.89 2.66
324 325 2.180017 GCATGAGGCCGCAAAGTG 59.820 61.111 14.96 8.88 36.11 3.16
325 326 2.334946 GCATGAGGCCGCAAAGTGA 61.335 57.895 14.96 0.00 36.11 3.41
326 327 1.660560 GCATGAGGCCGCAAAGTGAT 61.661 55.000 14.96 0.00 36.11 3.06
327 328 1.667236 CATGAGGCCGCAAAGTGATA 58.333 50.000 14.96 0.00 0.00 2.15
328 329 2.224606 CATGAGGCCGCAAAGTGATAT 58.775 47.619 14.96 0.00 0.00 1.63
329 330 1.667236 TGAGGCCGCAAAGTGATATG 58.333 50.000 6.75 0.00 0.00 1.78
330 331 1.209261 TGAGGCCGCAAAGTGATATGA 59.791 47.619 6.75 0.00 0.00 2.15
331 332 1.869767 GAGGCCGCAAAGTGATATGAG 59.130 52.381 0.00 0.00 0.00 2.90
332 333 0.947244 GGCCGCAAAGTGATATGAGG 59.053 55.000 0.00 0.00 39.25 3.86
333 334 1.668419 GCCGCAAAGTGATATGAGGT 58.332 50.000 0.00 0.00 38.58 3.85
334 335 1.331756 GCCGCAAAGTGATATGAGGTG 59.668 52.381 0.00 0.00 38.58 4.00
335 336 2.632377 CCGCAAAGTGATATGAGGTGT 58.368 47.619 0.00 0.00 32.55 4.16
336 337 3.009723 CCGCAAAGTGATATGAGGTGTT 58.990 45.455 0.00 0.00 32.55 3.32
337 338 4.188462 CCGCAAAGTGATATGAGGTGTTA 58.812 43.478 0.00 0.00 32.55 2.41
338 339 4.034048 CCGCAAAGTGATATGAGGTGTTAC 59.966 45.833 0.00 0.00 32.55 2.50
339 340 4.629634 CGCAAAGTGATATGAGGTGTTACA 59.370 41.667 0.00 0.00 0.00 2.41
340 341 5.294306 CGCAAAGTGATATGAGGTGTTACAT 59.706 40.000 0.00 0.00 0.00 2.29
341 342 6.489675 GCAAAGTGATATGAGGTGTTACATG 58.510 40.000 0.00 0.00 0.00 3.21
342 343 6.489675 CAAAGTGATATGAGGTGTTACATGC 58.510 40.000 0.00 0.00 0.00 4.06
343 344 5.620738 AGTGATATGAGGTGTTACATGCT 57.379 39.130 0.00 0.00 0.00 3.79
344 345 6.731292 AGTGATATGAGGTGTTACATGCTA 57.269 37.500 0.00 0.00 0.00 3.49
345 346 6.753180 AGTGATATGAGGTGTTACATGCTAG 58.247 40.000 0.00 0.00 0.00 3.42
346 347 6.551227 AGTGATATGAGGTGTTACATGCTAGA 59.449 38.462 0.00 0.00 0.00 2.43
347 348 7.234371 AGTGATATGAGGTGTTACATGCTAGAT 59.766 37.037 0.00 0.00 0.00 1.98
348 349 7.543868 GTGATATGAGGTGTTACATGCTAGATC 59.456 40.741 0.00 0.00 0.00 2.75
349 350 4.307443 TGAGGTGTTACATGCTAGATCG 57.693 45.455 0.00 0.00 0.00 3.69
350 351 3.951680 TGAGGTGTTACATGCTAGATCGA 59.048 43.478 0.00 0.00 0.00 3.59
351 352 4.584743 TGAGGTGTTACATGCTAGATCGAT 59.415 41.667 0.00 0.00 0.00 3.59
352 353 4.876125 AGGTGTTACATGCTAGATCGATG 58.124 43.478 0.54 0.00 0.00 3.84
353 354 4.342378 AGGTGTTACATGCTAGATCGATGT 59.658 41.667 0.54 0.00 34.68 3.06
354 355 4.445718 GGTGTTACATGCTAGATCGATGTG 59.554 45.833 0.54 0.00 32.59 3.21
355 356 4.445718 GTGTTACATGCTAGATCGATGTGG 59.554 45.833 0.54 0.91 32.59 4.17
356 357 2.160822 ACATGCTAGATCGATGTGGC 57.839 50.000 21.82 21.82 0.00 5.01
357 358 1.413812 ACATGCTAGATCGATGTGGCA 59.586 47.619 30.60 30.60 41.44 4.92
358 359 2.038164 ACATGCTAGATCGATGTGGCAT 59.962 45.455 31.92 31.92 46.44 4.40
359 360 2.916702 TGCTAGATCGATGTGGCATT 57.083 45.000 26.29 0.00 32.82 3.56
360 361 2.486918 TGCTAGATCGATGTGGCATTG 58.513 47.619 26.29 2.21 32.82 2.82
361 362 2.102925 TGCTAGATCGATGTGGCATTGA 59.897 45.455 26.29 6.99 32.82 2.57
362 363 2.735663 GCTAGATCGATGTGGCATTGAG 59.264 50.000 23.30 4.17 0.00 3.02
363 364 2.996249 AGATCGATGTGGCATTGAGT 57.004 45.000 0.54 0.00 0.00 3.41
364 365 2.831333 AGATCGATGTGGCATTGAGTC 58.169 47.619 0.54 4.06 0.00 3.36
365 366 1.524355 GATCGATGTGGCATTGAGTCG 59.476 52.381 0.54 0.00 0.00 4.18
366 367 0.460109 TCGATGTGGCATTGAGTCGG 60.460 55.000 0.00 0.00 0.00 4.79
367 368 1.431488 CGATGTGGCATTGAGTCGGG 61.431 60.000 0.00 0.00 0.00 5.14
368 369 1.077501 ATGTGGCATTGAGTCGGGG 60.078 57.895 0.00 0.00 0.00 5.73
369 370 1.852157 ATGTGGCATTGAGTCGGGGT 61.852 55.000 0.00 0.00 0.00 4.95
370 371 1.745489 GTGGCATTGAGTCGGGGTC 60.745 63.158 0.00 0.00 0.00 4.46
371 372 2.124695 GGCATTGAGTCGGGGTCC 60.125 66.667 0.00 0.00 0.00 4.46
372 373 2.670148 GGCATTGAGTCGGGGTCCT 61.670 63.158 0.00 0.00 0.00 3.85
373 374 1.450312 GCATTGAGTCGGGGTCCTG 60.450 63.158 0.00 0.00 0.00 3.86
374 375 1.899437 GCATTGAGTCGGGGTCCTGA 61.899 60.000 0.00 0.00 0.00 3.86
943 946 2.122783 TGTTTGGGCCGATTCCTTAG 57.877 50.000 0.00 0.00 0.00 2.18
1000 1003 6.941436 AGTAAATCGTTTTTGGTATGGGTACA 59.059 34.615 0.00 0.00 32.25 2.90
1236 1239 1.220206 CCAGAGCTGCGGAACTCAT 59.780 57.895 10.09 0.00 35.28 2.90
1329 1332 1.106285 GTTGGAGATGGGATTGCACC 58.894 55.000 0.00 0.00 0.00 5.01
1380 1383 3.007831 GGAGAAATGGTGGAATTTGCCAA 59.992 43.478 0.00 0.00 40.20 4.52
1613 1616 0.400213 TGTCGAAGTGAAAGCCCCAT 59.600 50.000 0.00 0.00 0.00 4.00
1625 1628 5.070847 GTGAAAGCCCCATGGATTATTGAAT 59.929 40.000 15.22 0.00 40.02 2.57
1700 1703 2.097110 TCCTATAGGCCGTGGTCAAT 57.903 50.000 14.50 0.00 34.44 2.57
1819 1822 5.928264 TGAGAGTGAGACATTGTATTGTGTG 59.072 40.000 0.00 0.00 0.00 3.82
1856 1859 0.884704 AAAACGCTCGACTGTGGCAT 60.885 50.000 0.00 0.00 0.00 4.40
1870 1874 7.120579 TCGACTGTGGCATAATTAGTTCAAATT 59.879 33.333 0.00 0.00 33.69 1.82
1917 1921 3.370840 TTCCATTCTTGTAGCAGCCAT 57.629 42.857 0.00 0.00 0.00 4.40
1921 1925 0.744414 TTCTTGTAGCAGCCATCGCC 60.744 55.000 0.00 0.00 34.57 5.54
1950 1954 1.352017 TGCTCCTCTGCAATTTCTGGA 59.648 47.619 0.00 0.00 40.29 3.86
2148 2152 4.530710 TCTTAGAAAGAGCCGCTAAACA 57.469 40.909 0.00 0.00 32.71 2.83
2163 2167 3.616560 GCTAAACAATCGGACCAGACAGA 60.617 47.826 0.00 0.00 0.00 3.41
2323 2327 5.057149 CCAGCTATTAACGTTGGCTTATCT 58.943 41.667 11.99 0.00 0.00 1.98
2433 2437 1.922135 GCCGCCTTCGCTCAATTTGA 61.922 55.000 0.00 0.00 0.00 2.69
2452 2456 0.035630 AGTCAGACCTTGATGCTGCC 60.036 55.000 0.00 0.00 38.29 4.85
2479 2483 2.802816 GGCATTACTGAATAGAGGTGCG 59.197 50.000 0.00 0.00 32.68 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.650116 CCGAGGGGACAGACACAGG 61.650 68.421 0.00 0.00 34.06 4.00
1 2 2.973899 CCGAGGGGACAGACACAG 59.026 66.667 0.00 0.00 34.06 3.66
12 13 1.449601 CGTGACATTTCCCCGAGGG 60.450 63.158 0.00 0.00 46.11 4.30
13 14 2.106683 GCGTGACATTTCCCCGAGG 61.107 63.158 0.00 0.00 0.00 4.63
14 15 2.452813 CGCGTGACATTTCCCCGAG 61.453 63.158 0.00 0.00 0.00 4.63
15 16 2.233605 ATCGCGTGACATTTCCCCGA 62.234 55.000 5.77 0.00 0.00 5.14
16 17 1.813753 ATCGCGTGACATTTCCCCG 60.814 57.895 5.77 0.00 0.00 5.73
17 18 0.742990 TCATCGCGTGACATTTCCCC 60.743 55.000 5.77 0.00 0.00 4.81
18 19 1.083489 TTCATCGCGTGACATTTCCC 58.917 50.000 5.77 0.00 36.32 3.97
19 20 3.303132 GGTATTCATCGCGTGACATTTCC 60.303 47.826 5.77 0.00 36.32 3.13
20 21 3.601586 CGGTATTCATCGCGTGACATTTC 60.602 47.826 5.77 0.00 36.32 2.17
21 22 2.284150 CGGTATTCATCGCGTGACATTT 59.716 45.455 5.77 0.00 36.32 2.32
22 23 1.858458 CGGTATTCATCGCGTGACATT 59.142 47.619 5.77 0.35 36.32 2.71
23 24 1.487482 CGGTATTCATCGCGTGACAT 58.513 50.000 5.77 8.34 36.32 3.06
24 25 0.526739 CCGGTATTCATCGCGTGACA 60.527 55.000 5.77 1.63 36.32 3.58
25 26 0.248743 TCCGGTATTCATCGCGTGAC 60.249 55.000 5.77 0.00 36.32 3.67
26 27 0.030235 CTCCGGTATTCATCGCGTGA 59.970 55.000 5.77 0.00 34.25 4.35
27 28 0.248907 ACTCCGGTATTCATCGCGTG 60.249 55.000 5.77 3.96 0.00 5.34
28 29 0.030369 GACTCCGGTATTCATCGCGT 59.970 55.000 5.77 0.00 0.00 6.01
29 30 0.663568 GGACTCCGGTATTCATCGCG 60.664 60.000 0.00 0.00 0.00 5.87
30 31 0.674534 AGGACTCCGGTATTCATCGC 59.325 55.000 0.00 0.00 0.00 4.58
31 32 1.681793 ACAGGACTCCGGTATTCATCG 59.318 52.381 0.00 0.00 28.50 3.84
32 33 3.821421 AACAGGACTCCGGTATTCATC 57.179 47.619 0.00 0.00 30.50 2.92
33 34 3.069729 GCTAACAGGACTCCGGTATTCAT 59.930 47.826 0.00 0.00 30.50 2.57
34 35 2.429610 GCTAACAGGACTCCGGTATTCA 59.570 50.000 0.00 0.00 30.50 2.57
35 36 2.223994 GGCTAACAGGACTCCGGTATTC 60.224 54.545 0.00 0.00 30.50 1.75
36 37 1.761198 GGCTAACAGGACTCCGGTATT 59.239 52.381 0.00 0.00 30.50 1.89
37 38 1.411041 GGCTAACAGGACTCCGGTAT 58.589 55.000 0.00 0.00 30.50 2.73
38 39 0.685458 GGGCTAACAGGACTCCGGTA 60.685 60.000 0.00 0.00 30.50 4.02
39 40 1.988406 GGGCTAACAGGACTCCGGT 60.988 63.158 0.00 0.00 32.35 5.28
40 41 2.901042 GGGCTAACAGGACTCCGG 59.099 66.667 0.00 0.00 0.00 5.14
41 42 2.494918 CGGGCTAACAGGACTCCG 59.505 66.667 0.00 0.00 0.00 4.63
42 43 1.041447 TAGCGGGCTAACAGGACTCC 61.041 60.000 0.00 0.00 0.00 3.85
43 44 0.102663 GTAGCGGGCTAACAGGACTC 59.897 60.000 1.27 0.00 0.00 3.36
44 45 0.613853 TGTAGCGGGCTAACAGGACT 60.614 55.000 1.27 0.00 0.00 3.85
45 46 0.179108 CTGTAGCGGGCTAACAGGAC 60.179 60.000 16.04 3.33 30.94 3.85
46 47 1.956629 GCTGTAGCGGGCTAACAGGA 61.957 60.000 21.01 0.00 33.00 3.86
47 48 1.521681 GCTGTAGCGGGCTAACAGG 60.522 63.158 21.01 8.29 33.00 4.00
48 49 1.521681 GGCTGTAGCGGGCTAACAG 60.522 63.158 17.99 17.99 43.26 3.16
49 50 2.582436 GGCTGTAGCGGGCTAACA 59.418 61.111 1.27 2.96 43.26 2.41
50 51 2.203029 GGGCTGTAGCGGGCTAAC 60.203 66.667 1.27 0.00 43.26 2.34
51 52 3.845259 CGGGCTGTAGCGGGCTAA 61.845 66.667 1.27 0.00 43.26 3.09
55 56 4.832608 GAACCGGGCTGTAGCGGG 62.833 72.222 6.32 10.03 43.26 6.13
56 57 4.077184 TGAACCGGGCTGTAGCGG 62.077 66.667 6.32 0.00 43.26 5.52
57 58 2.813908 GTGAACCGGGCTGTAGCG 60.814 66.667 6.32 0.00 43.26 4.26
58 59 2.436115 GGTGAACCGGGCTGTAGC 60.436 66.667 6.32 0.00 41.14 3.58
68 69 1.255667 TAGCAGGACTCCGGTGAACC 61.256 60.000 11.17 12.62 0.00 3.62
69 70 0.173708 CTAGCAGGACTCCGGTGAAC 59.826 60.000 11.17 2.34 0.00 3.18
70 71 1.605058 GCTAGCAGGACTCCGGTGAA 61.605 60.000 10.63 0.00 0.00 3.18
71 72 2.052690 GCTAGCAGGACTCCGGTGA 61.053 63.158 10.63 0.00 0.00 4.02
72 73 2.496817 GCTAGCAGGACTCCGGTG 59.503 66.667 10.63 0.00 0.00 4.94
73 74 2.760385 GGCTAGCAGGACTCCGGT 60.760 66.667 18.24 0.00 0.00 5.28
74 75 3.541713 GGGCTAGCAGGACTCCGG 61.542 72.222 18.24 0.00 0.00 5.14
75 76 2.759973 TGGGCTAGCAGGACTCCG 60.760 66.667 18.24 0.00 0.00 4.63
76 77 1.687493 ACTGGGCTAGCAGGACTCC 60.687 63.158 18.24 7.80 0.00 3.85
77 78 1.519719 CACTGGGCTAGCAGGACTC 59.480 63.158 18.24 0.00 0.00 3.36
78 79 2.664081 GCACTGGGCTAGCAGGACT 61.664 63.158 18.24 0.00 40.25 3.85
79 80 2.124942 GCACTGGGCTAGCAGGAC 60.125 66.667 18.24 4.03 40.25 3.85
88 89 2.437359 CAGGCTGTAGCACTGGGC 60.437 66.667 6.28 0.00 44.36 5.36
89 90 2.270205 CCAGGCTGTAGCACTGGG 59.730 66.667 22.92 9.51 46.46 4.45
91 92 1.065926 TGAATCCAGGCTGTAGCACTG 60.066 52.381 14.43 10.05 44.36 3.66
92 93 1.065854 GTGAATCCAGGCTGTAGCACT 60.066 52.381 14.43 0.00 44.36 4.40
93 94 1.065854 AGTGAATCCAGGCTGTAGCAC 60.066 52.381 14.43 14.76 44.36 4.40
94 95 1.208052 GAGTGAATCCAGGCTGTAGCA 59.792 52.381 14.43 3.20 44.36 3.49
95 96 1.804372 CGAGTGAATCCAGGCTGTAGC 60.804 57.143 14.43 0.00 41.14 3.58
96 97 1.804372 GCGAGTGAATCCAGGCTGTAG 60.804 57.143 14.43 0.00 0.00 2.74
97 98 0.175760 GCGAGTGAATCCAGGCTGTA 59.824 55.000 14.43 0.00 0.00 2.74
98 99 1.078848 GCGAGTGAATCCAGGCTGT 60.079 57.895 14.43 0.00 0.00 4.40
99 100 1.088340 CAGCGAGTGAATCCAGGCTG 61.088 60.000 7.75 7.75 41.42 4.85
100 101 1.220206 CAGCGAGTGAATCCAGGCT 59.780 57.895 0.00 0.00 0.00 4.58
101 102 0.179062 ATCAGCGAGTGAATCCAGGC 60.179 55.000 0.00 0.00 39.19 4.85
102 103 1.137675 TCATCAGCGAGTGAATCCAGG 59.862 52.381 0.00 0.00 39.19 4.45
103 104 2.200067 GTCATCAGCGAGTGAATCCAG 58.800 52.381 0.00 0.00 39.19 3.86
104 105 1.134699 GGTCATCAGCGAGTGAATCCA 60.135 52.381 0.00 0.00 39.19 3.41
105 106 1.576356 GGTCATCAGCGAGTGAATCC 58.424 55.000 0.00 0.00 39.19 3.01
106 107 1.203928 CGGTCATCAGCGAGTGAATC 58.796 55.000 0.00 0.00 46.86 2.52
107 108 3.352447 CGGTCATCAGCGAGTGAAT 57.648 52.632 0.00 0.00 46.86 2.57
108 109 4.889427 CGGTCATCAGCGAGTGAA 57.111 55.556 0.00 0.00 46.86 3.18
114 115 0.647410 GAATGTGTCGGTCATCAGCG 59.353 55.000 0.00 0.00 45.20 5.18
115 116 0.647410 CGAATGTGTCGGTCATCAGC 59.353 55.000 0.00 0.00 46.45 4.26
125 126 1.009829 GACCCAGCATCGAATGTGTC 58.990 55.000 0.00 0.00 0.00 3.67
126 127 0.324614 TGACCCAGCATCGAATGTGT 59.675 50.000 0.00 0.00 0.00 3.72
127 128 1.332686 CATGACCCAGCATCGAATGTG 59.667 52.381 0.00 0.00 0.00 3.21
128 129 1.671979 CATGACCCAGCATCGAATGT 58.328 50.000 0.00 0.00 0.00 2.71
129 130 0.949397 CCATGACCCAGCATCGAATG 59.051 55.000 0.00 0.00 0.00 2.67
130 131 0.839277 TCCATGACCCAGCATCGAAT 59.161 50.000 0.00 0.00 0.00 3.34
131 132 0.839277 ATCCATGACCCAGCATCGAA 59.161 50.000 0.00 0.00 0.00 3.71
132 133 0.107268 CATCCATGACCCAGCATCGA 59.893 55.000 0.00 0.00 0.00 3.59
133 134 1.512996 GCATCCATGACCCAGCATCG 61.513 60.000 0.00 0.00 0.00 3.84
134 135 1.177256 GGCATCCATGACCCAGCATC 61.177 60.000 0.00 0.00 0.00 3.91
135 136 1.152610 GGCATCCATGACCCAGCAT 60.153 57.895 0.00 0.00 0.00 3.79
136 137 2.276409 GGCATCCATGACCCAGCA 59.724 61.111 0.00 0.00 0.00 4.41
137 138 1.826921 CAGGCATCCATGACCCAGC 60.827 63.158 0.00 0.00 36.08 4.85
138 139 0.465097 GACAGGCATCCATGACCCAG 60.465 60.000 0.00 0.00 36.08 4.45
139 140 1.609239 GACAGGCATCCATGACCCA 59.391 57.895 0.00 0.00 36.08 4.51
140 141 1.152881 GGACAGGCATCCATGACCC 60.153 63.158 0.00 0.00 38.77 4.46
141 142 1.152881 GGGACAGGCATCCATGACC 60.153 63.158 9.72 0.00 40.96 4.02
142 143 1.918253 AGGGACAGGCATCCATGAC 59.082 57.895 9.72 0.00 40.96 3.06
143 144 4.506076 AGGGACAGGCATCCATGA 57.494 55.556 9.72 0.00 40.96 3.07
144 145 4.573210 CAGGGACAGGCATCCATG 57.427 61.111 7.89 7.89 43.58 3.66
145 146 1.492176 CTTACAGGGACAGGCATCCAT 59.508 52.381 9.72 0.00 40.96 3.41
146 147 0.911769 CTTACAGGGACAGGCATCCA 59.088 55.000 9.72 0.00 40.96 3.41
147 148 0.912486 ACTTACAGGGACAGGCATCC 59.088 55.000 0.00 0.00 38.13 3.51
148 149 2.749621 CAAACTTACAGGGACAGGCATC 59.250 50.000 0.00 0.00 0.00 3.91
149 150 2.108250 ACAAACTTACAGGGACAGGCAT 59.892 45.455 0.00 0.00 0.00 4.40
150 151 1.493022 ACAAACTTACAGGGACAGGCA 59.507 47.619 0.00 0.00 0.00 4.75
151 152 1.880027 CACAAACTTACAGGGACAGGC 59.120 52.381 0.00 0.00 0.00 4.85
152 153 1.880027 GCACAAACTTACAGGGACAGG 59.120 52.381 0.00 0.00 0.00 4.00
153 154 1.880027 GGCACAAACTTACAGGGACAG 59.120 52.381 0.00 0.00 0.00 3.51
154 155 1.213182 TGGCACAAACTTACAGGGACA 59.787 47.619 0.00 0.00 31.92 4.02
155 156 1.607148 GTGGCACAAACTTACAGGGAC 59.393 52.381 13.86 0.00 44.16 4.46
156 157 1.493022 AGTGGCACAAACTTACAGGGA 59.507 47.619 21.41 0.00 44.16 4.20
157 158 1.981256 AGTGGCACAAACTTACAGGG 58.019 50.000 21.41 0.00 44.16 4.45
158 159 3.490761 CCAAAGTGGCACAAACTTACAGG 60.491 47.826 21.41 4.96 44.16 4.00
159 160 3.490761 CCCAAAGTGGCACAAACTTACAG 60.491 47.826 21.41 0.00 44.16 2.74
160 161 2.428890 CCCAAAGTGGCACAAACTTACA 59.571 45.455 21.41 0.00 44.16 2.41
161 162 2.429250 ACCCAAAGTGGCACAAACTTAC 59.571 45.455 21.41 0.00 44.16 2.34
162 163 2.741145 ACCCAAAGTGGCACAAACTTA 58.259 42.857 21.41 0.00 44.16 2.24
163 164 1.567357 ACCCAAAGTGGCACAAACTT 58.433 45.000 21.41 1.75 44.16 2.66
164 165 1.567357 AACCCAAAGTGGCACAAACT 58.433 45.000 21.41 0.00 44.16 2.66
165 166 2.394930 AAACCCAAAGTGGCACAAAC 57.605 45.000 21.41 0.00 44.16 2.93
166 167 2.159226 CGTAAACCCAAAGTGGCACAAA 60.159 45.455 21.41 0.00 44.16 2.83
167 168 1.405821 CGTAAACCCAAAGTGGCACAA 59.594 47.619 21.41 0.00 44.16 3.33
168 169 1.025812 CGTAAACCCAAAGTGGCACA 58.974 50.000 21.41 0.00 35.79 4.57
169 170 1.002142 GTCGTAAACCCAAAGTGGCAC 60.002 52.381 10.29 10.29 35.79 5.01
170 171 1.134037 AGTCGTAAACCCAAAGTGGCA 60.134 47.619 0.00 0.00 35.79 4.92
171 172 1.601166 AGTCGTAAACCCAAAGTGGC 58.399 50.000 0.00 0.00 35.79 5.01
172 173 2.740447 GCTAGTCGTAAACCCAAAGTGG 59.260 50.000 0.00 0.00 37.25 4.00
173 174 2.740447 GGCTAGTCGTAAACCCAAAGTG 59.260 50.000 0.00 0.00 0.00 3.16
174 175 2.369532 TGGCTAGTCGTAAACCCAAAGT 59.630 45.455 0.00 0.00 0.00 2.66
175 176 3.048337 TGGCTAGTCGTAAACCCAAAG 57.952 47.619 0.00 0.00 0.00 2.77
176 177 3.244630 ACATGGCTAGTCGTAAACCCAAA 60.245 43.478 0.00 0.00 0.00 3.28
177 178 2.303600 ACATGGCTAGTCGTAAACCCAA 59.696 45.455 0.00 0.00 0.00 4.12
178 179 1.903860 ACATGGCTAGTCGTAAACCCA 59.096 47.619 0.00 0.00 0.00 4.51
179 180 2.093869 TGACATGGCTAGTCGTAAACCC 60.094 50.000 0.00 0.00 38.83 4.11
180 181 3.187700 CTGACATGGCTAGTCGTAAACC 58.812 50.000 0.00 0.00 38.83 3.27
181 182 2.603560 GCTGACATGGCTAGTCGTAAAC 59.396 50.000 0.00 0.00 38.83 2.01
182 183 2.418197 GGCTGACATGGCTAGTCGTAAA 60.418 50.000 0.00 0.00 38.83 2.01
183 184 1.136305 GGCTGACATGGCTAGTCGTAA 59.864 52.381 0.00 0.00 38.83 3.18
184 185 0.744874 GGCTGACATGGCTAGTCGTA 59.255 55.000 0.00 0.00 38.83 3.43
185 186 1.517832 GGCTGACATGGCTAGTCGT 59.482 57.895 0.00 0.00 38.83 4.34
186 187 1.227380 GGGCTGACATGGCTAGTCG 60.227 63.158 0.00 2.82 38.83 4.18
187 188 1.227380 CGGGCTGACATGGCTAGTC 60.227 63.158 0.00 0.00 36.55 2.59
188 189 2.735772 CCGGGCTGACATGGCTAGT 61.736 63.158 0.00 0.00 0.00 2.57
189 190 2.109799 CCGGGCTGACATGGCTAG 59.890 66.667 0.00 0.00 0.00 3.42
190 191 3.479203 CCCGGGCTGACATGGCTA 61.479 66.667 8.08 0.00 0.00 3.93
201 202 0.912486 ATATGATAAGGAGCCCGGGC 59.088 55.000 39.29 39.29 42.33 6.13
202 203 1.210478 CCATATGATAAGGAGCCCGGG 59.790 57.143 19.09 19.09 0.00 5.73
203 204 2.187958 TCCATATGATAAGGAGCCCGG 58.812 52.381 3.65 0.00 0.00 5.73
204 205 3.801698 CATCCATATGATAAGGAGCCCG 58.198 50.000 3.65 0.00 34.84 6.13
205 206 3.054139 TGCATCCATATGATAAGGAGCCC 60.054 47.826 3.65 0.00 34.84 5.19
206 207 4.226427 TGCATCCATATGATAAGGAGCC 57.774 45.455 3.65 0.00 34.84 4.70
207 208 4.096081 GCTTGCATCCATATGATAAGGAGC 59.904 45.833 3.65 6.83 34.84 4.70
208 209 4.331992 CGCTTGCATCCATATGATAAGGAG 59.668 45.833 3.65 0.00 34.84 3.69
209 210 4.020307 TCGCTTGCATCCATATGATAAGGA 60.020 41.667 3.65 0.00 34.84 3.36
210 211 4.093998 GTCGCTTGCATCCATATGATAAGG 59.906 45.833 3.65 0.00 34.84 2.69
211 212 4.692155 TGTCGCTTGCATCCATATGATAAG 59.308 41.667 3.65 2.72 34.84 1.73
212 213 4.452114 GTGTCGCTTGCATCCATATGATAA 59.548 41.667 3.65 0.00 34.84 1.75
213 214 3.996363 GTGTCGCTTGCATCCATATGATA 59.004 43.478 3.65 0.00 34.84 2.15
214 215 2.810274 GTGTCGCTTGCATCCATATGAT 59.190 45.455 3.65 0.00 34.84 2.45
215 216 2.158914 AGTGTCGCTTGCATCCATATGA 60.159 45.455 3.65 0.00 34.84 2.15
216 217 2.216046 AGTGTCGCTTGCATCCATATG 58.784 47.619 0.00 0.00 36.09 1.78
217 218 2.627515 AGTGTCGCTTGCATCCATAT 57.372 45.000 0.00 0.00 0.00 1.78
218 219 3.653344 GATAGTGTCGCTTGCATCCATA 58.347 45.455 0.00 0.00 0.00 2.74
219 220 2.487934 GATAGTGTCGCTTGCATCCAT 58.512 47.619 0.00 0.00 0.00 3.41
220 221 1.802508 CGATAGTGTCGCTTGCATCCA 60.803 52.381 0.00 0.00 44.33 3.41
221 222 0.855349 CGATAGTGTCGCTTGCATCC 59.145 55.000 0.00 0.00 44.33 3.51
235 236 5.038683 TCTTTTGGCACACGTATACGATAG 58.961 41.667 30.77 20.51 43.02 2.08
236 237 4.799949 GTCTTTTGGCACACGTATACGATA 59.200 41.667 30.77 7.82 43.02 2.92
237 238 3.615496 GTCTTTTGGCACACGTATACGAT 59.385 43.478 30.77 15.67 43.02 3.73
238 239 2.988493 GTCTTTTGGCACACGTATACGA 59.012 45.455 30.77 5.08 43.02 3.43
239 240 2.222420 CGTCTTTTGGCACACGTATACG 60.222 50.000 23.24 23.24 39.29 3.06
240 241 2.473376 GCGTCTTTTGGCACACGTATAC 60.473 50.000 8.64 0.00 39.29 1.47
241 242 1.727880 GCGTCTTTTGGCACACGTATA 59.272 47.619 8.64 0.00 39.29 1.47
242 243 0.515564 GCGTCTTTTGGCACACGTAT 59.484 50.000 8.64 0.00 39.29 3.06
243 244 0.810426 TGCGTCTTTTGGCACACGTA 60.810 50.000 8.64 2.73 39.29 3.57
244 245 1.649390 TTGCGTCTTTTGGCACACGT 61.649 50.000 8.64 0.00 39.29 4.49
245 246 0.524392 TTTGCGTCTTTTGGCACACG 60.524 50.000 0.00 0.00 39.29 4.49
246 247 0.920664 GTTTGCGTCTTTTGGCACAC 59.079 50.000 0.00 0.00 39.29 3.82
247 248 0.524392 CGTTTGCGTCTTTTGGCACA 60.524 50.000 0.00 0.00 39.20 4.57
248 249 1.206115 CCGTTTGCGTCTTTTGGCAC 61.206 55.000 0.00 0.00 39.20 5.01
249 250 1.064946 CCGTTTGCGTCTTTTGGCA 59.935 52.632 0.00 0.00 37.39 4.92
250 251 0.933047 GACCGTTTGCGTCTTTTGGC 60.933 55.000 0.00 0.00 36.15 4.52
251 252 0.317519 GGACCGTTTGCGTCTTTTGG 60.318 55.000 0.00 0.00 36.15 3.28
252 253 0.317519 GGGACCGTTTGCGTCTTTTG 60.318 55.000 0.00 0.00 36.15 2.44
253 254 1.778027 CGGGACCGTTTGCGTCTTTT 61.778 55.000 1.86 0.00 36.15 2.27
254 255 2.248835 CGGGACCGTTTGCGTCTTT 61.249 57.895 1.86 0.00 36.15 2.52
255 256 2.663852 CGGGACCGTTTGCGTCTT 60.664 61.111 1.86 0.00 36.15 3.01
256 257 4.675029 CCGGGACCGTTTGCGTCT 62.675 66.667 10.17 0.00 37.81 4.18
261 262 2.907917 TTTGCCCGGGACCGTTTG 60.908 61.111 29.31 0.00 37.81 2.93
262 263 2.596338 CTTTGCCCGGGACCGTTT 60.596 61.111 29.31 0.00 37.81 3.60
263 264 4.653888 CCTTTGCCCGGGACCGTT 62.654 66.667 29.31 0.00 37.81 4.44
265 266 3.256824 TTACCTTTGCCCGGGACCG 62.257 63.158 29.31 8.74 39.44 4.79
266 267 1.378119 CTTACCTTTGCCCGGGACC 60.378 63.158 29.31 8.20 0.00 4.46
267 268 1.378119 CCTTACCTTTGCCCGGGAC 60.378 63.158 29.31 16.95 0.00 4.46
268 269 3.083386 CCTTACCTTTGCCCGGGA 58.917 61.111 29.31 6.60 0.00 5.14
269 270 2.754254 GCCTTACCTTTGCCCGGG 60.754 66.667 19.09 19.09 0.00 5.73
270 271 3.131478 CGCCTTACCTTTGCCCGG 61.131 66.667 0.00 0.00 0.00 5.73
271 272 2.046700 TCGCCTTACCTTTGCCCG 60.047 61.111 0.00 0.00 0.00 6.13
272 273 1.302993 TGTCGCCTTACCTTTGCCC 60.303 57.895 0.00 0.00 0.00 5.36
273 274 1.583495 GGTGTCGCCTTACCTTTGCC 61.583 60.000 0.00 0.00 34.11 4.52
274 275 1.583495 GGGTGTCGCCTTACCTTTGC 61.583 60.000 1.66 0.00 37.15 3.68
275 276 1.296056 CGGGTGTCGCCTTACCTTTG 61.296 60.000 1.66 0.00 37.15 2.77
276 277 1.004200 CGGGTGTCGCCTTACCTTT 60.004 57.895 1.66 0.00 37.15 3.11
277 278 2.212110 ACGGGTGTCGCCTTACCTT 61.212 57.895 1.66 0.00 43.89 3.50
278 279 2.602568 ACGGGTGTCGCCTTACCT 60.603 61.111 1.66 0.00 43.89 3.08
279 280 2.433664 CACGGGTGTCGCCTTACC 60.434 66.667 1.66 0.00 43.89 2.85
280 281 2.433664 CCACGGGTGTCGCCTTAC 60.434 66.667 1.66 0.00 43.89 2.34
281 282 3.697747 CCCACGGGTGTCGCCTTA 61.698 66.667 1.66 0.00 43.89 2.69
284 285 3.021473 TATTCCCACGGGTGTCGCC 62.021 63.158 1.07 0.00 43.89 5.54
285 286 1.812507 GTATTCCCACGGGTGTCGC 60.813 63.158 1.07 0.00 43.89 5.19
286 287 0.459585 CAGTATTCCCACGGGTGTCG 60.460 60.000 1.07 0.00 45.88 4.35
287 288 0.611714 ACAGTATTCCCACGGGTGTC 59.388 55.000 1.07 0.00 36.47 3.67
288 289 0.323629 CACAGTATTCCCACGGGTGT 59.676 55.000 1.07 0.00 36.47 4.16
289 290 1.024579 GCACAGTATTCCCACGGGTG 61.025 60.000 1.07 0.00 36.47 4.61
290 291 1.298667 GCACAGTATTCCCACGGGT 59.701 57.895 1.07 0.00 36.47 5.28
291 292 0.107214 ATGCACAGTATTCCCACGGG 60.107 55.000 0.00 0.00 0.00 5.28
292 293 1.016627 CATGCACAGTATTCCCACGG 58.983 55.000 0.00 0.00 0.00 4.94
293 294 1.935873 CTCATGCACAGTATTCCCACG 59.064 52.381 0.00 0.00 0.00 4.94
294 295 2.292267 CCTCATGCACAGTATTCCCAC 58.708 52.381 0.00 0.00 0.00 4.61
295 296 1.408683 GCCTCATGCACAGTATTCCCA 60.409 52.381 0.00 0.00 40.77 4.37
296 297 1.312815 GCCTCATGCACAGTATTCCC 58.687 55.000 0.00 0.00 40.77 3.97
297 298 1.312815 GGCCTCATGCACAGTATTCC 58.687 55.000 0.00 0.00 43.89 3.01
298 299 0.940126 CGGCCTCATGCACAGTATTC 59.060 55.000 0.00 0.00 43.89 1.75
299 300 1.097547 GCGGCCTCATGCACAGTATT 61.098 55.000 0.00 0.00 43.89 1.89
300 301 1.524621 GCGGCCTCATGCACAGTAT 60.525 57.895 0.00 0.00 43.89 2.12
301 302 2.125147 GCGGCCTCATGCACAGTA 60.125 61.111 0.00 0.00 43.89 2.74
302 303 3.848301 TTGCGGCCTCATGCACAGT 62.848 57.895 0.00 0.00 41.57 3.55
303 304 2.537792 CTTTGCGGCCTCATGCACAG 62.538 60.000 0.00 1.18 41.57 3.66
304 305 2.596923 TTTGCGGCCTCATGCACA 60.597 55.556 0.00 0.00 41.57 4.57
305 306 2.180017 CTTTGCGGCCTCATGCAC 59.820 61.111 0.00 0.00 41.57 4.57
306 307 2.282391 ACTTTGCGGCCTCATGCA 60.282 55.556 0.00 0.00 43.89 3.96
307 308 1.660560 ATCACTTTGCGGCCTCATGC 61.661 55.000 0.00 0.00 40.16 4.06
308 309 1.667236 TATCACTTTGCGGCCTCATG 58.333 50.000 0.00 0.00 0.00 3.07
309 310 2.158769 TCATATCACTTTGCGGCCTCAT 60.159 45.455 0.00 0.00 0.00 2.90
310 311 1.209261 TCATATCACTTTGCGGCCTCA 59.791 47.619 0.00 0.00 0.00 3.86
311 312 1.869767 CTCATATCACTTTGCGGCCTC 59.130 52.381 0.00 0.00 0.00 4.70
312 313 1.475751 CCTCATATCACTTTGCGGCCT 60.476 52.381 0.00 0.00 0.00 5.19
313 314 0.947244 CCTCATATCACTTTGCGGCC 59.053 55.000 0.00 0.00 0.00 6.13
314 315 1.331756 CACCTCATATCACTTTGCGGC 59.668 52.381 0.00 0.00 0.00 6.53
315 316 2.632377 ACACCTCATATCACTTTGCGG 58.368 47.619 0.00 0.00 0.00 5.69
316 317 4.629634 TGTAACACCTCATATCACTTTGCG 59.370 41.667 0.00 0.00 0.00 4.85
317 318 6.489675 CATGTAACACCTCATATCACTTTGC 58.510 40.000 0.00 0.00 0.00 3.68
318 319 6.317140 AGCATGTAACACCTCATATCACTTTG 59.683 38.462 0.00 0.00 0.00 2.77
319 320 6.418101 AGCATGTAACACCTCATATCACTTT 58.582 36.000 0.00 0.00 0.00 2.66
320 321 5.994250 AGCATGTAACACCTCATATCACTT 58.006 37.500 0.00 0.00 0.00 3.16
321 322 5.620738 AGCATGTAACACCTCATATCACT 57.379 39.130 0.00 0.00 0.00 3.41
322 323 6.749139 TCTAGCATGTAACACCTCATATCAC 58.251 40.000 0.00 0.00 0.00 3.06
323 324 6.976934 TCTAGCATGTAACACCTCATATCA 57.023 37.500 0.00 0.00 0.00 2.15
324 325 6.749578 CGATCTAGCATGTAACACCTCATATC 59.250 42.308 0.00 0.00 0.00 1.63
325 326 6.434340 TCGATCTAGCATGTAACACCTCATAT 59.566 38.462 0.00 0.00 0.00 1.78
326 327 5.768164 TCGATCTAGCATGTAACACCTCATA 59.232 40.000 0.00 0.00 0.00 2.15
327 328 4.584743 TCGATCTAGCATGTAACACCTCAT 59.415 41.667 0.00 0.00 0.00 2.90
328 329 3.951680 TCGATCTAGCATGTAACACCTCA 59.048 43.478 0.00 0.00 0.00 3.86
329 330 4.569761 TCGATCTAGCATGTAACACCTC 57.430 45.455 0.00 0.00 0.00 3.85
330 331 4.342378 ACATCGATCTAGCATGTAACACCT 59.658 41.667 0.00 0.00 0.00 4.00
331 332 4.445718 CACATCGATCTAGCATGTAACACC 59.554 45.833 0.00 0.00 0.00 4.16
332 333 4.445718 CCACATCGATCTAGCATGTAACAC 59.554 45.833 0.00 0.00 0.00 3.32
333 334 4.620982 CCACATCGATCTAGCATGTAACA 58.379 43.478 0.00 0.00 0.00 2.41
334 335 3.430218 GCCACATCGATCTAGCATGTAAC 59.570 47.826 0.00 0.00 0.00 2.50
335 336 3.069443 TGCCACATCGATCTAGCATGTAA 59.931 43.478 8.31 0.00 0.00 2.41
336 337 2.627699 TGCCACATCGATCTAGCATGTA 59.372 45.455 8.31 0.00 0.00 2.29
337 338 1.413812 TGCCACATCGATCTAGCATGT 59.586 47.619 8.31 0.00 0.00 3.21
338 339 2.159327 TGCCACATCGATCTAGCATG 57.841 50.000 8.31 0.00 0.00 4.06
339 340 3.072211 CAATGCCACATCGATCTAGCAT 58.928 45.455 16.08 16.08 42.44 3.79
340 341 2.102925 TCAATGCCACATCGATCTAGCA 59.897 45.455 13.38 13.38 34.28 3.49
341 342 2.735663 CTCAATGCCACATCGATCTAGC 59.264 50.000 0.00 0.00 0.00 3.42
342 343 3.986572 GACTCAATGCCACATCGATCTAG 59.013 47.826 0.00 0.00 0.00 2.43
343 344 3.550842 CGACTCAATGCCACATCGATCTA 60.551 47.826 0.00 0.00 0.00 1.98
344 345 2.800985 CGACTCAATGCCACATCGATCT 60.801 50.000 0.00 0.00 0.00 2.75
345 346 1.524355 CGACTCAATGCCACATCGATC 59.476 52.381 0.00 0.00 0.00 3.69
346 347 1.575244 CGACTCAATGCCACATCGAT 58.425 50.000 0.00 0.00 0.00 3.59
347 348 0.460109 CCGACTCAATGCCACATCGA 60.460 55.000 0.00 0.00 0.00 3.59
348 349 1.431488 CCCGACTCAATGCCACATCG 61.431 60.000 0.00 0.00 0.00 3.84
349 350 1.097547 CCCCGACTCAATGCCACATC 61.098 60.000 0.00 0.00 0.00 3.06
350 351 1.077501 CCCCGACTCAATGCCACAT 60.078 57.895 0.00 0.00 0.00 3.21
351 352 2.350895 CCCCGACTCAATGCCACA 59.649 61.111 0.00 0.00 0.00 4.17
352 353 1.745489 GACCCCGACTCAATGCCAC 60.745 63.158 0.00 0.00 0.00 5.01
353 354 2.668632 GACCCCGACTCAATGCCA 59.331 61.111 0.00 0.00 0.00 4.92
354 355 2.124695 GGACCCCGACTCAATGCC 60.125 66.667 0.00 0.00 0.00 4.40
355 356 1.450312 CAGGACCCCGACTCAATGC 60.450 63.158 0.00 0.00 0.00 3.56
356 357 0.108138 GTCAGGACCCCGACTCAATG 60.108 60.000 4.70 0.00 0.00 2.82
357 358 0.544357 TGTCAGGACCCCGACTCAAT 60.544 55.000 11.80 0.00 31.80 2.57
358 359 1.152419 TGTCAGGACCCCGACTCAA 60.152 57.895 11.80 0.00 31.80 3.02
359 360 1.606601 CTGTCAGGACCCCGACTCA 60.607 63.158 11.80 0.00 31.80 3.41
360 361 3.007973 GCTGTCAGGACCCCGACTC 62.008 68.421 11.80 2.37 31.80 3.36
361 362 2.997897 GCTGTCAGGACCCCGACT 60.998 66.667 11.80 0.00 31.80 4.18
362 363 4.436998 CGCTGTCAGGACCCCGAC 62.437 72.222 1.14 4.95 0.00 4.79
363 364 3.572447 TACGCTGTCAGGACCCCGA 62.572 63.158 13.31 0.00 0.00 5.14
364 365 3.064987 CTACGCTGTCAGGACCCCG 62.065 68.421 1.14 0.00 0.00 5.73
365 366 2.722201 CCTACGCTGTCAGGACCCC 61.722 68.421 1.14 0.00 33.42 4.95
366 367 2.893398 CCTACGCTGTCAGGACCC 59.107 66.667 1.14 0.00 33.42 4.46
367 368 2.184579 GCCTACGCTGTCAGGACC 59.815 66.667 1.14 0.00 33.42 4.46
368 369 2.184579 GGCCTACGCTGTCAGGAC 59.815 66.667 1.14 0.00 33.42 3.85
369 370 2.037367 AGGCCTACGCTGTCAGGA 59.963 61.111 1.29 0.00 33.42 3.86
370 371 2.185350 CAGGCCTACGCTGTCAGG 59.815 66.667 3.98 0.00 34.44 3.86
371 372 1.446792 CACAGGCCTACGCTGTCAG 60.447 63.158 3.98 0.00 34.44 3.51
372 373 2.656646 CACAGGCCTACGCTGTCA 59.343 61.111 3.98 0.00 34.44 3.58
373 374 1.961180 ATCCACAGGCCTACGCTGTC 61.961 60.000 3.98 0.00 34.44 3.51
374 375 1.990060 ATCCACAGGCCTACGCTGT 60.990 57.895 3.98 0.00 34.44 4.40
375 376 1.522355 CATCCACAGGCCTACGCTG 60.522 63.158 3.98 0.00 34.44 5.18
376 377 2.903357 CATCCACAGGCCTACGCT 59.097 61.111 3.98 0.00 34.44 5.07
377 378 2.897350 GCATCCACAGGCCTACGC 60.897 66.667 3.98 0.00 0.00 4.42
378 379 2.586079 CGCATCCACAGGCCTACG 60.586 66.667 3.98 0.00 0.00 3.51
698 699 0.178906 TCCTGACCAGACCCATGTGA 60.179 55.000 0.00 0.00 0.00 3.58
819 822 5.324409 TGAATTGAGCAACTGTATTTCCCT 58.676 37.500 0.00 0.00 0.00 4.20
943 946 0.868177 GCTTTCGACTAGGCTCTCGC 60.868 60.000 9.13 0.00 0.00 5.03
1236 1239 9.475620 TGGTCATTCTACTTTCTAATAGAGTCA 57.524 33.333 0.00 0.00 0.00 3.41
1329 1332 7.307493 TGAATCTCGTTCAATCCATAAACAG 57.693 36.000 0.00 0.00 43.64 3.16
1380 1383 0.953960 GGCGATTCCTTTCACACCGT 60.954 55.000 0.00 0.00 0.00 4.83
1613 1616 8.190122 GTGCACAGATTTACATTCAATAATCCA 58.810 33.333 13.17 0.00 0.00 3.41
1625 1628 2.147958 GGGTTCGTGCACAGATTTACA 58.852 47.619 18.64 0.00 0.00 2.41
1700 1703 5.068723 GTCTGTCCCCGATTATAAGTTCTCA 59.931 44.000 0.00 0.00 0.00 3.27
1819 1822 4.087930 CGTTTTTGTCCAATCGCAACATAC 59.912 41.667 0.00 0.00 0.00 2.39
1870 1874 5.132502 TCCAAAGCATTCACTTCTGAAAGA 58.867 37.500 0.00 0.00 44.68 2.52
1917 1921 3.219928 GAGCAGGATCCGAGGCGA 61.220 66.667 16.84 0.00 0.00 5.54
1921 1925 2.040330 CAGAGGAGCAGGATCCGAG 58.960 63.158 5.98 4.36 44.65 4.63
2099 2103 6.320164 CGGGAATGTAAATAGAAAACATCCCA 59.680 38.462 15.84 0.00 38.98 4.37
2148 2152 0.904649 TGCATCTGTCTGGTCCGATT 59.095 50.000 0.00 0.00 0.00 3.34
2182 2186 4.320935 GCTTGTGTTTCAATCACGGGTAAT 60.321 41.667 0.00 0.00 38.48 1.89
2323 2327 4.034258 GACCCGACGCGACTGACA 62.034 66.667 15.93 0.00 0.00 3.58
2433 2437 0.035630 GGCAGCATCAAGGTCTGACT 60.036 55.000 7.85 0.00 36.69 3.41
2452 2456 5.163364 ACCTCTATTCAGTAATGCCTGAGTG 60.163 44.000 0.00 0.00 42.16 3.51
2467 2471 2.100916 TGTAAGCCTCGCACCTCTATTC 59.899 50.000 0.00 0.00 0.00 1.75
2479 2483 0.324943 TGGGCACTTCTGTAAGCCTC 59.675 55.000 0.00 0.00 46.23 4.70
2567 2571 2.306341 AGTGGCATTCGATCACAGAG 57.694 50.000 0.00 0.00 34.17 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.