Multiple sequence alignment - TraesCS4B01G143900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G143900 chr4B 100.000 5087 0 0 1 5087 192061186 192056100 0.000000e+00 9395.0
1 TraesCS4B01G143900 chr4B 90.385 52 5 0 2943 2994 69379581 69379632 9.140000e-08 69.4
2 TraesCS4B01G143900 chr4A 94.146 3707 120 31 724 4396 440180066 440183709 0.000000e+00 5553.0
3 TraesCS4B01G143900 chr4A 86.520 319 25 7 4391 4708 440187337 440187638 8.160000e-88 335.0
4 TraesCS4B01G143900 chr4A 81.188 101 14 3 2899 2997 550481906 550481809 5.460000e-10 76.8
5 TraesCS4B01G143900 chr4D 96.242 3300 94 21 724 4011 128169077 128165796 0.000000e+00 5380.0
6 TraesCS4B01G143900 chr4D 94.359 390 18 1 4319 4708 128165350 128164965 3.390000e-166 595.0
7 TraesCS4B01G143900 chr4D 87.252 353 36 5 4739 5087 128158867 128158520 1.330000e-105 394.0
8 TraesCS4B01G143900 chr4D 93.609 266 12 3 4059 4324 128165664 128165404 4.770000e-105 392.0
9 TraesCS4B01G143900 chr4D 80.198 101 15 3 2899 2997 47535109 47535012 2.540000e-08 71.3
10 TraesCS4B01G143900 chr7D 85.785 605 65 8 1646 2244 442793167 442793756 5.590000e-174 621.0
11 TraesCS4B01G143900 chr7B 82.527 744 87 20 1 714 642501523 642500793 9.360000e-172 614.0
12 TraesCS4B01G143900 chr7B 85.968 506 67 3 1741 2244 460559364 460559867 5.800000e-149 538.0
13 TraesCS4B01G143900 chr6D 78.434 881 153 32 1664 2530 317854420 317853563 1.610000e-149 540.0
14 TraesCS4B01G143900 chr6A 78.860 842 141 32 1664 2494 455316702 455315887 7.500000e-148 534.0
15 TraesCS4B01G143900 chr6A 79.273 275 57 0 2779 3053 455315579 455315305 5.200000e-45 193.0
16 TraesCS4B01G143900 chr6B 78.656 848 144 33 1661 2494 506546270 506547094 3.490000e-146 529.0
17 TraesCS4B01G143900 chr6B 78.467 274 59 0 2780 3053 506547398 506547671 4.050000e-41 180.0
18 TraesCS4B01G143900 chr5D 78.935 413 63 15 43 443 46064651 46065051 5.050000e-65 259.0
19 TraesCS4B01G143900 chr2A 96.552 87 3 0 4182 4268 698276915 698276829 1.480000e-30 145.0
20 TraesCS4B01G143900 chr2A 87.671 73 5 4 4773 4843 712334505 712334575 1.170000e-11 82.4
21 TraesCS4B01G143900 chr3A 95.000 60 3 0 4209 4268 594620534 594620475 1.510000e-15 95.3
22 TraesCS4B01G143900 chr2D 79.412 136 18 8 4711 4843 551857218 551857346 2.520000e-13 87.9
23 TraesCS4B01G143900 chr1D 87.671 73 5 4 4617 4687 475655787 475655717 1.170000e-11 82.4
24 TraesCS4B01G143900 chr7A 97.059 34 1 0 666 699 555476092 555476059 1.980000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G143900 chr4B 192056100 192061186 5086 True 9395.000000 9395 100.000000 1 5087 1 chr4B.!!$R1 5086
1 TraesCS4B01G143900 chr4A 440180066 440187638 7572 False 2944.000000 5553 90.333000 724 4708 2 chr4A.!!$F1 3984
2 TraesCS4B01G143900 chr4D 128164965 128169077 4112 True 2122.333333 5380 94.736667 724 4708 3 chr4D.!!$R3 3984
3 TraesCS4B01G143900 chr7D 442793167 442793756 589 False 621.000000 621 85.785000 1646 2244 1 chr7D.!!$F1 598
4 TraesCS4B01G143900 chr7B 642500793 642501523 730 True 614.000000 614 82.527000 1 714 1 chr7B.!!$R1 713
5 TraesCS4B01G143900 chr7B 460559364 460559867 503 False 538.000000 538 85.968000 1741 2244 1 chr7B.!!$F1 503
6 TraesCS4B01G143900 chr6D 317853563 317854420 857 True 540.000000 540 78.434000 1664 2530 1 chr6D.!!$R1 866
7 TraesCS4B01G143900 chr6A 455315305 455316702 1397 True 363.500000 534 79.066500 1664 3053 2 chr6A.!!$R1 1389
8 TraesCS4B01G143900 chr6B 506546270 506547671 1401 False 354.500000 529 78.561500 1661 3053 2 chr6B.!!$F1 1392

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
994 1049 0.178068 ATACACGCTCCACATCCCAC 59.822 55.000 0.0 0.0 0.00 4.61 F
1036 1094 0.108945 GTACGTAGCGAGCCAACCTT 60.109 55.000 0.0 0.0 0.00 3.50 F
1528 1586 0.390472 CTTCAACGAGTCCCTCTGGC 60.390 60.000 0.0 0.0 0.00 4.85 F
2866 3037 1.376037 CCCAAGAACCAGACGGAGC 60.376 63.158 0.0 0.0 35.59 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2866 3037 0.459237 GCCGCGATATGGAGGATCTG 60.459 60.000 8.23 0.0 33.73 2.90 R
3092 3263 6.128200 CGATGTGTCAGAAAATCAGAATCCAA 60.128 38.462 0.00 0.0 0.00 3.53 R
3259 3430 1.622232 GCCCGTCGTAGAACTTGTAC 58.378 55.000 0.00 0.0 39.69 2.90 R
4914 8891 0.306533 TGAAACGAAAACGAGCTGGC 59.693 50.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.709475 GGATGACGCCACGATTGC 59.291 61.111 0.00 0.00 0.00 3.56
40 41 2.709475 GATGACGCCACGATTGCC 59.291 61.111 0.00 0.00 0.00 4.52
41 42 2.046411 ATGACGCCACGATTGCCA 60.046 55.556 0.00 0.00 0.00 4.92
62 63 2.065512 CAACCGGCAATTGTAAAAGCC 58.934 47.619 0.00 0.00 44.60 4.35
70 71 3.989817 GCAATTGTAAAAGCCTCAACTGG 59.010 43.478 7.40 0.00 0.00 4.00
71 72 4.501400 GCAATTGTAAAAGCCTCAACTGGT 60.501 41.667 7.40 0.00 0.00 4.00
82 83 6.128138 AGCCTCAACTGGTATAGAAAAAGT 57.872 37.500 0.00 0.00 0.00 2.66
128 133 1.000145 GGCGTAGAGGAAAAGCTTCG 59.000 55.000 0.00 0.00 31.77 3.79
138 143 2.132762 GAAAAGCTTCGAACGTGGAGA 58.867 47.619 0.00 0.00 0.00 3.71
148 153 2.096713 CGAACGTGGAGAAAAGCTTCAG 60.097 50.000 0.00 0.00 31.00 3.02
161 167 2.514803 AGCTTCAGCCCGTGTAAAAAT 58.485 42.857 0.00 0.00 43.38 1.82
172 178 4.143073 CCCGTGTAAAAATGTTTCGATCGA 60.143 41.667 15.15 15.15 0.00 3.59
175 181 6.521821 CCGTGTAAAAATGTTTCGATCGAAAT 59.478 34.615 37.37 25.58 44.52 2.17
176 182 7.252865 CCGTGTAAAAATGTTTCGATCGAAATC 60.253 37.037 37.37 29.81 44.52 2.17
177 183 7.267388 CGTGTAAAAATGTTTCGATCGAAATCA 59.733 33.333 37.37 33.08 44.52 2.57
178 184 8.567221 GTGTAAAAATGTTTCGATCGAAATCAG 58.433 33.333 37.37 0.75 44.52 2.90
198 204 6.317789 TCAGAAAAAGCTTCAACCATACAG 57.682 37.500 0.00 0.00 0.00 2.74
221 228 4.929819 AAAAAGCTTCAACCGGTGTAAT 57.070 36.364 8.52 0.00 0.00 1.89
225 232 5.622770 AAGCTTCAACCGGTGTAATAAAG 57.377 39.130 8.52 7.16 0.00 1.85
233 240 3.053917 ACCGGTGTAATAAAGGCTTCCAT 60.054 43.478 6.12 0.00 0.00 3.41
245 252 2.237143 AGGCTTCCATCGTGAATCTTCA 59.763 45.455 0.00 0.00 34.20 3.02
246 253 3.009723 GGCTTCCATCGTGAATCTTCAA 58.990 45.455 0.00 0.00 39.21 2.69
252 259 4.083537 TCCATCGTGAATCTTCAAAAACCG 60.084 41.667 0.00 0.00 39.21 4.44
269 276 4.329545 GGGGCCGTCTGCTGACAA 62.330 66.667 21.72 0.00 43.06 3.18
270 277 2.045926 GGGCCGTCTGCTGACAAT 60.046 61.111 21.72 0.00 43.06 2.71
271 278 2.401766 GGGCCGTCTGCTGACAATG 61.402 63.158 21.72 11.38 43.06 2.82
272 279 1.672356 GGCCGTCTGCTGACAATGT 60.672 57.895 21.72 0.00 43.06 2.71
273 280 0.391130 GGCCGTCTGCTGACAATGTA 60.391 55.000 21.72 0.00 43.06 2.29
274 281 1.656652 GCCGTCTGCTGACAATGTAT 58.343 50.000 21.72 0.00 43.06 2.29
281 288 1.066215 TGCTGACAATGTATGAGCGGT 60.066 47.619 6.93 0.00 32.85 5.68
322 329 4.471726 GCATGGTGCTGCTGCGAC 62.472 66.667 11.21 9.81 40.96 5.19
323 330 3.051479 CATGGTGCTGCTGCGACA 61.051 61.111 11.21 12.16 43.34 4.35
325 332 4.994471 TGGTGCTGCTGCGACAGG 62.994 66.667 11.21 0.00 43.34 4.00
336 343 3.340727 GCGACAGGCGTGTTACTAT 57.659 52.632 14.12 0.00 43.41 2.12
343 350 2.867091 GCGTGTTACTATGGCGGCG 61.867 63.158 0.51 0.51 0.00 6.46
354 361 1.672854 ATGGCGGCGACTAGTTGCTA 61.673 55.000 29.72 16.55 39.87 3.49
358 365 1.269166 CGGCGACTAGTTGCTACAAG 58.731 55.000 29.72 14.98 39.87 3.16
367 374 1.019805 GTTGCTACAAGGACGGAGGC 61.020 60.000 0.00 0.00 0.00 4.70
402 409 0.604243 AAATGGCGGACGTTGCTACA 60.604 50.000 12.59 4.80 0.00 2.74
405 414 2.813908 GCGGACGTTGCTACAGGG 60.814 66.667 6.49 0.00 0.00 4.45
419 428 4.148825 AGGGCGACGACTGGATGC 62.149 66.667 0.00 0.00 0.00 3.91
424 433 2.181777 GACGACTGGATGCTGCGA 59.818 61.111 12.62 0.00 0.00 5.10
447 456 4.697756 CCCTGCTGAAACCGGCGA 62.698 66.667 9.30 0.00 38.76 5.54
448 457 3.121030 CCTGCTGAAACCGGCGAG 61.121 66.667 9.30 0.06 38.76 5.03
450 459 3.589654 CTGCTGAAACCGGCGAGGA 62.590 63.158 9.30 0.00 45.00 3.71
451 460 2.358247 GCTGAAACCGGCGAGGAA 60.358 61.111 9.30 0.00 45.00 3.36
452 461 2.391389 GCTGAAACCGGCGAGGAAG 61.391 63.158 9.30 0.00 45.00 3.46
453 462 1.741770 CTGAAACCGGCGAGGAAGG 60.742 63.158 9.30 0.00 45.00 3.46
454 463 3.125573 GAAACCGGCGAGGAAGGC 61.126 66.667 9.30 0.00 45.00 4.35
519 571 3.865302 GCAGCACTCTCATATCCATGGAG 60.865 52.174 21.33 6.88 36.40 3.86
520 572 3.324268 CAGCACTCTCATATCCATGGAGT 59.676 47.826 21.33 8.64 40.42 3.85
546 598 2.093869 GGTTGCTGTAGGGACGTCAATA 60.094 50.000 18.91 6.38 0.00 1.90
548 600 2.453521 TGCTGTAGGGACGTCAATAGT 58.546 47.619 18.91 0.00 0.00 2.12
552 604 4.337555 GCTGTAGGGACGTCAATAGTAGAA 59.662 45.833 18.91 0.00 0.00 2.10
555 607 6.363065 TGTAGGGACGTCAATAGTAGAAGAT 58.637 40.000 18.91 0.00 0.00 2.40
603 657 1.011595 AGGAGCCTAGGAGGAAGACA 58.988 55.000 14.75 0.00 37.67 3.41
606 660 2.180276 GAGCCTAGGAGGAAGACAACA 58.820 52.381 14.75 0.00 37.67 3.33
617 672 7.212274 AGGAGGAAGACAACAATTCATTTTTG 58.788 34.615 0.00 0.00 0.00 2.44
634 689 6.645827 TCATTTTTGAAGTCAATCGTACGGTA 59.354 34.615 16.52 0.00 35.55 4.02
635 690 7.332430 TCATTTTTGAAGTCAATCGTACGGTAT 59.668 33.333 16.52 0.00 35.55 2.73
641 696 5.509716 AGTCAATCGTACGGTATGAATCA 57.490 39.130 16.52 0.00 0.00 2.57
650 705 7.999213 TCGTACGGTATGAATCATTTTAATCG 58.001 34.615 16.52 0.00 0.00 3.34
652 707 8.904712 CGTACGGTATGAATCATTTTAATCGTA 58.095 33.333 7.57 3.13 0.00 3.43
655 710 9.483916 ACGGTATGAATCATTTTAATCGTATGA 57.516 29.630 0.00 0.00 33.25 2.15
659 714 6.655062 TGAATCATTTTAATCGTATGACCGC 58.345 36.000 0.00 0.00 31.66 5.68
660 715 5.607119 ATCATTTTAATCGTATGACCGCC 57.393 39.130 0.00 0.00 31.66 6.13
662 717 4.509970 TCATTTTAATCGTATGACCGCCAG 59.490 41.667 0.00 0.00 0.00 4.85
664 719 2.502213 TAATCGTATGACCGCCAGTG 57.498 50.000 0.00 0.00 0.00 3.66
678 733 2.920912 AGTGGACCGGCCGAAAGA 60.921 61.111 30.73 4.48 40.66 2.52
714 769 0.580104 GCGCGTATTACTCGCCAAAT 59.420 50.000 17.93 0.00 45.44 2.32
715 770 1.004292 GCGCGTATTACTCGCCAAATT 60.004 47.619 17.93 0.00 45.44 1.82
716 771 2.538132 GCGCGTATTACTCGCCAAATTT 60.538 45.455 17.93 0.00 45.44 1.82
717 772 4.027706 GCGCGTATTACTCGCCAAATTTT 61.028 43.478 17.93 0.00 45.44 1.82
718 773 5.478300 GCGCGTATTACTCGCCAAATTTTT 61.478 41.667 17.93 0.00 45.44 1.94
810 865 6.627395 ACGTGAGTGAAAATATCCAACAAA 57.373 33.333 0.00 0.00 46.97 2.83
811 866 7.033530 ACGTGAGTGAAAATATCCAACAAAA 57.966 32.000 0.00 0.00 46.97 2.44
861 916 5.108179 CGAACGAACAAACAAACAAACAACT 60.108 36.000 0.00 0.00 0.00 3.16
950 1005 5.302059 TCGATAATCTGTTAGTTCCCTCCAG 59.698 44.000 0.00 0.00 0.00 3.86
994 1049 0.178068 ATACACGCTCCACATCCCAC 59.822 55.000 0.00 0.00 0.00 4.61
995 1050 1.895020 TACACGCTCCACATCCCACC 61.895 60.000 0.00 0.00 0.00 4.61
996 1051 2.927856 ACGCTCCACATCCCACCA 60.928 61.111 0.00 0.00 0.00 4.17
997 1052 2.300967 ACGCTCCACATCCCACCAT 61.301 57.895 0.00 0.00 0.00 3.55
1036 1094 0.108945 GTACGTAGCGAGCCAACCTT 60.109 55.000 0.00 0.00 0.00 3.50
1088 1146 1.576272 TCTTTCCCTCCTCCTCCTAGG 59.424 57.143 0.82 0.82 38.06 3.02
1440 1498 2.281276 GACCCCAAGAAACCGCGT 60.281 61.111 4.92 0.00 0.00 6.01
1528 1586 0.390472 CTTCAACGAGTCCCTCTGGC 60.390 60.000 0.00 0.00 0.00 4.85
1589 1661 3.188460 GCCACGTCTGCTCTTTTTCATAA 59.812 43.478 0.00 0.00 0.00 1.90
1590 1662 4.142600 GCCACGTCTGCTCTTTTTCATAAT 60.143 41.667 0.00 0.00 0.00 1.28
1593 1665 7.348201 CCACGTCTGCTCTTTTTCATAATATC 58.652 38.462 0.00 0.00 0.00 1.63
1594 1666 7.225538 CCACGTCTGCTCTTTTTCATAATATCT 59.774 37.037 0.00 0.00 0.00 1.98
1595 1667 8.272176 CACGTCTGCTCTTTTTCATAATATCTC 58.728 37.037 0.00 0.00 0.00 2.75
1596 1668 7.981789 ACGTCTGCTCTTTTTCATAATATCTCA 59.018 33.333 0.00 0.00 0.00 3.27
1597 1669 8.986847 CGTCTGCTCTTTTTCATAATATCTCAT 58.013 33.333 0.00 0.00 0.00 2.90
2254 2367 1.812525 GAGAGCTGGATCGTGCAGA 59.187 57.895 9.90 0.00 38.14 4.26
2289 2402 2.642171 TGGACTTCCTCACCACCTAT 57.358 50.000 0.00 0.00 36.82 2.57
2606 2722 1.827969 AGACTACACAGGTGATCAGCC 59.172 52.381 20.92 12.97 0.00 4.85
2866 3037 1.376037 CCCAAGAACCAGACGGAGC 60.376 63.158 0.00 0.00 35.59 4.70
3120 3291 5.072040 TCTGATTTTCTGACACATCGCTA 57.928 39.130 0.00 0.00 0.00 4.26
3125 3296 2.941453 TCTGACACATCGCTAGAACC 57.059 50.000 0.00 0.00 0.00 3.62
3167 3338 3.790437 CAGGAGGACGGCTGCCAT 61.790 66.667 20.29 1.94 0.00 4.40
3268 3439 0.108945 CGGGGAGGACGTACAAGTTC 60.109 60.000 0.00 0.00 0.00 3.01
3682 3853 1.513158 CATCGTGGAGAAGACGGCT 59.487 57.895 0.00 0.00 37.43 5.52
4055 4332 3.441222 TCGGCGTTTCTTATCTAGACACA 59.559 43.478 6.85 0.00 33.95 3.72
4056 4333 4.097437 TCGGCGTTTCTTATCTAGACACAT 59.903 41.667 6.85 0.00 33.95 3.21
4072 4349 8.204160 TCTAGACACATTTTTCTTCAGTGAGAA 58.796 33.333 0.00 0.00 34.00 2.87
4088 4365 5.178623 CAGTGAGAACCGTGCTTATTAAACA 59.821 40.000 0.00 0.00 0.00 2.83
4091 4368 5.407387 TGAGAACCGTGCTTATTAAACAGAC 59.593 40.000 0.00 0.00 0.00 3.51
4149 4426 6.673839 AGTCTACTTTTACTTCCTCAGCTT 57.326 37.500 0.00 0.00 0.00 3.74
4285 4567 6.402226 CGGCTTCCTGTTTGTACTCTATTTTC 60.402 42.308 0.00 0.00 0.00 2.29
4434 8408 4.903045 AGTCGGTTTAAAAGATCAGGGA 57.097 40.909 0.00 0.00 0.00 4.20
4474 8448 3.056465 AGAGTCGAGGAGCCAAAACTTAG 60.056 47.826 0.00 0.00 0.00 2.18
4584 8558 1.460504 TGTCAGTAGTGGAGCCGTAG 58.539 55.000 0.00 0.00 0.00 3.51
4604 8578 1.237285 AATGCTTGCCACTCGGTGTC 61.237 55.000 3.82 0.00 33.28 3.67
4626 8600 3.722147 TCGCTCCATTAGAGATGCTTTC 58.278 45.455 0.00 0.00 46.50 2.62
4640 8614 8.804912 AGAGATGCTTTCTACTTTTGATGAAT 57.195 30.769 0.00 0.00 33.74 2.57
4708 8685 6.628919 ACAAATTGTACCTTGGTTACTGAC 57.371 37.500 0.00 0.00 0.00 3.51
4709 8686 6.123651 ACAAATTGTACCTTGGTTACTGACA 58.876 36.000 0.00 0.00 0.00 3.58
4710 8687 6.775629 ACAAATTGTACCTTGGTTACTGACAT 59.224 34.615 0.00 0.00 0.00 3.06
4711 8688 7.286775 ACAAATTGTACCTTGGTTACTGACATT 59.713 33.333 0.00 0.00 0.00 2.71
4712 8689 7.833285 AATTGTACCTTGGTTACTGACATTT 57.167 32.000 0.00 0.00 0.00 2.32
4713 8690 7.833285 ATTGTACCTTGGTTACTGACATTTT 57.167 32.000 0.00 0.00 0.00 1.82
4714 8691 6.870971 TGTACCTTGGTTACTGACATTTTC 57.129 37.500 0.00 0.00 0.00 2.29
4715 8692 6.358178 TGTACCTTGGTTACTGACATTTTCA 58.642 36.000 0.00 0.00 0.00 2.69
4716 8693 7.001674 TGTACCTTGGTTACTGACATTTTCAT 58.998 34.615 0.00 0.00 32.17 2.57
4717 8694 6.575162 ACCTTGGTTACTGACATTTTCATC 57.425 37.500 0.00 0.00 32.17 2.92
4718 8695 5.476945 ACCTTGGTTACTGACATTTTCATCC 59.523 40.000 0.00 0.00 32.17 3.51
4719 8696 5.391950 CCTTGGTTACTGACATTTTCATCCG 60.392 44.000 0.00 0.00 32.17 4.18
4720 8697 4.647611 TGGTTACTGACATTTTCATCCGT 58.352 39.130 0.00 0.00 32.17 4.69
4721 8698 5.067273 TGGTTACTGACATTTTCATCCGTT 58.933 37.500 0.00 0.00 32.17 4.44
4722 8699 5.180492 TGGTTACTGACATTTTCATCCGTTC 59.820 40.000 0.00 0.00 32.17 3.95
4723 8700 5.180492 GGTTACTGACATTTTCATCCGTTCA 59.820 40.000 0.00 0.00 32.17 3.18
4724 8701 4.749245 ACTGACATTTTCATCCGTTCAC 57.251 40.909 0.00 0.00 32.17 3.18
4725 8702 3.502211 ACTGACATTTTCATCCGTTCACC 59.498 43.478 0.00 0.00 32.17 4.02
4726 8703 3.481453 TGACATTTTCATCCGTTCACCA 58.519 40.909 0.00 0.00 0.00 4.17
4727 8704 3.885901 TGACATTTTCATCCGTTCACCAA 59.114 39.130 0.00 0.00 0.00 3.67
4728 8705 4.226761 GACATTTTCATCCGTTCACCAAC 58.773 43.478 0.00 0.00 0.00 3.77
4729 8706 3.634448 ACATTTTCATCCGTTCACCAACA 59.366 39.130 0.00 0.00 32.14 3.33
4730 8707 4.098654 ACATTTTCATCCGTTCACCAACAA 59.901 37.500 0.00 0.00 32.14 2.83
4731 8708 4.720649 TTTTCATCCGTTCACCAACAAA 57.279 36.364 0.00 0.00 32.14 2.83
4732 8709 4.720649 TTTCATCCGTTCACCAACAAAA 57.279 36.364 0.00 0.00 32.14 2.44
4733 8710 4.927978 TTCATCCGTTCACCAACAAAAT 57.072 36.364 0.00 0.00 32.14 1.82
4734 8711 4.927978 TCATCCGTTCACCAACAAAATT 57.072 36.364 0.00 0.00 32.14 1.82
4735 8712 4.615949 TCATCCGTTCACCAACAAAATTG 58.384 39.130 0.00 0.00 32.14 2.32
4736 8713 4.098654 TCATCCGTTCACCAACAAAATTGT 59.901 37.500 0.00 0.00 44.72 2.71
4737 8714 5.299531 TCATCCGTTCACCAACAAAATTGTA 59.700 36.000 0.00 0.00 41.31 2.41
4738 8715 5.776173 TCCGTTCACCAACAAAATTGTAT 57.224 34.783 0.00 0.00 41.31 2.29
4739 8716 6.150396 TCCGTTCACCAACAAAATTGTATT 57.850 33.333 0.00 0.00 41.31 1.89
4740 8717 6.574350 TCCGTTCACCAACAAAATTGTATTT 58.426 32.000 0.00 0.00 41.31 1.40
4741 8718 7.042335 TCCGTTCACCAACAAAATTGTATTTT 58.958 30.769 0.00 0.00 41.31 1.82
4742 8719 7.549488 TCCGTTCACCAACAAAATTGTATTTTT 59.451 29.630 0.00 0.00 41.31 1.94
4763 8740 7.925043 TTTTTATTTGATGAGGCGGTACTAA 57.075 32.000 0.00 0.00 0.00 2.24
4764 8741 7.925043 TTTTATTTGATGAGGCGGTACTAAA 57.075 32.000 0.00 0.00 0.00 1.85
4765 8742 6.913873 TTATTTGATGAGGCGGTACTAAAC 57.086 37.500 0.00 0.00 0.00 2.01
4766 8743 4.546829 TTTGATGAGGCGGTACTAAACT 57.453 40.909 0.00 0.00 0.00 2.66
4767 8744 4.546829 TTGATGAGGCGGTACTAAACTT 57.453 40.909 0.00 0.00 0.00 2.66
4768 8745 4.546829 TGATGAGGCGGTACTAAACTTT 57.453 40.909 0.00 0.00 0.00 2.66
4769 8746 4.901868 TGATGAGGCGGTACTAAACTTTT 58.098 39.130 0.00 0.00 0.00 2.27
4770 8747 6.040209 TGATGAGGCGGTACTAAACTTTTA 57.960 37.500 0.00 0.00 0.00 1.52
4771 8748 6.465948 TGATGAGGCGGTACTAAACTTTTAA 58.534 36.000 0.00 0.00 0.00 1.52
4772 8749 6.592607 TGATGAGGCGGTACTAAACTTTTAAG 59.407 38.462 0.00 0.00 0.00 1.85
4773 8750 4.692155 TGAGGCGGTACTAAACTTTTAAGC 59.308 41.667 0.00 0.00 0.00 3.09
4774 8751 3.681417 AGGCGGTACTAAACTTTTAAGCG 59.319 43.478 0.00 2.23 31.38 4.68
4775 8752 3.433274 GGCGGTACTAAACTTTTAAGCGT 59.567 43.478 0.00 0.00 31.07 5.07
4776 8753 4.083855 GGCGGTACTAAACTTTTAAGCGTT 60.084 41.667 0.00 0.00 31.07 4.84
4777 8754 5.075448 GCGGTACTAAACTTTTAAGCGTTC 58.925 41.667 0.00 0.00 31.07 3.95
4778 8755 5.333263 GCGGTACTAAACTTTTAAGCGTTCA 60.333 40.000 0.00 0.00 31.07 3.18
4779 8756 6.619232 GCGGTACTAAACTTTTAAGCGTTCAT 60.619 38.462 0.00 0.00 31.07 2.57
4780 8757 6.952083 CGGTACTAAACTTTTAAGCGTTCATC 59.048 38.462 0.00 0.00 0.00 2.92
4781 8758 7.148689 CGGTACTAAACTTTTAAGCGTTCATCT 60.149 37.037 0.00 0.00 0.00 2.90
4782 8759 7.955864 GGTACTAAACTTTTAAGCGTTCATCTG 59.044 37.037 0.00 0.00 0.00 2.90
4783 8760 6.371389 ACTAAACTTTTAAGCGTTCATCTGC 58.629 36.000 0.00 0.00 0.00 4.26
4784 8761 5.438761 AAACTTTTAAGCGTTCATCTGCT 57.561 34.783 0.00 0.00 44.97 4.24
4785 8762 6.554334 AAACTTTTAAGCGTTCATCTGCTA 57.446 33.333 0.00 0.00 41.46 3.49
4786 8763 5.786401 ACTTTTAAGCGTTCATCTGCTAG 57.214 39.130 0.00 0.00 41.46 3.42
4787 8764 5.479306 ACTTTTAAGCGTTCATCTGCTAGA 58.521 37.500 0.00 0.00 41.46 2.43
4788 8765 5.932303 ACTTTTAAGCGTTCATCTGCTAGAA 59.068 36.000 0.00 0.00 41.46 2.10
4789 8766 6.426937 ACTTTTAAGCGTTCATCTGCTAGAAA 59.573 34.615 0.00 0.00 41.46 2.52
4790 8767 6.795098 TTTAAGCGTTCATCTGCTAGAAAA 57.205 33.333 0.00 0.00 41.46 2.29
4791 8768 4.935885 AAGCGTTCATCTGCTAGAAAAG 57.064 40.909 0.00 0.00 41.46 2.27
4792 8769 4.193826 AGCGTTCATCTGCTAGAAAAGA 57.806 40.909 0.00 0.00 40.28 2.52
4793 8770 4.569943 AGCGTTCATCTGCTAGAAAAGAA 58.430 39.130 0.00 0.00 40.28 2.52
4794 8771 4.997395 AGCGTTCATCTGCTAGAAAAGAAA 59.003 37.500 0.00 0.00 40.28 2.52
4795 8772 5.470098 AGCGTTCATCTGCTAGAAAAGAAAA 59.530 36.000 0.00 0.00 40.28 2.29
4796 8773 6.017109 AGCGTTCATCTGCTAGAAAAGAAAAA 60.017 34.615 0.00 0.00 40.28 1.94
4797 8774 6.086896 GCGTTCATCTGCTAGAAAAGAAAAAC 59.913 38.462 0.00 2.07 0.00 2.43
4798 8775 6.300902 CGTTCATCTGCTAGAAAAGAAAAACG 59.699 38.462 16.76 16.76 37.70 3.60
4799 8776 6.861065 TCATCTGCTAGAAAAGAAAAACGT 57.139 33.333 0.00 0.00 0.00 3.99
4800 8777 7.259290 TCATCTGCTAGAAAAGAAAAACGTT 57.741 32.000 0.00 0.00 0.00 3.99
4801 8778 7.703328 TCATCTGCTAGAAAAGAAAAACGTTT 58.297 30.769 7.96 7.96 33.35 3.60
4802 8779 8.188139 TCATCTGCTAGAAAAGAAAAACGTTTT 58.812 29.630 20.26 20.26 31.07 2.43
4803 8780 9.445786 CATCTGCTAGAAAAGAAAAACGTTTTA 57.554 29.630 25.44 7.48 31.07 1.52
4805 8782 9.659830 TCTGCTAGAAAAGAAAAACGTTTTATC 57.340 29.630 25.44 21.80 31.07 1.75
4806 8783 8.791355 TGCTAGAAAAGAAAAACGTTTTATCC 57.209 30.769 25.44 16.99 31.07 2.59
4807 8784 8.626526 TGCTAGAAAAGAAAAACGTTTTATCCT 58.373 29.630 25.44 18.71 31.07 3.24
4816 8793 9.955208 AGAAAAACGTTTTATCCTAAATTTCGT 57.045 25.926 25.44 5.67 0.00 3.85
4819 8796 9.611284 AAAACGTTTTATCCTAAATTTCGTACC 57.389 29.630 24.13 0.00 0.00 3.34
4820 8797 8.552083 AACGTTTTATCCTAAATTTCGTACCT 57.448 30.769 0.00 0.00 0.00 3.08
4821 8798 7.967178 ACGTTTTATCCTAAATTTCGTACCTG 58.033 34.615 0.00 0.00 0.00 4.00
4822 8799 7.064966 ACGTTTTATCCTAAATTTCGTACCTGG 59.935 37.037 0.00 0.00 0.00 4.45
4823 8800 7.466320 CGTTTTATCCTAAATTTCGTACCTGGG 60.466 40.741 0.00 0.00 0.00 4.45
4824 8801 3.271055 TCCTAAATTTCGTACCTGGGC 57.729 47.619 0.00 0.00 0.00 5.36
4825 8802 2.841881 TCCTAAATTTCGTACCTGGGCT 59.158 45.455 0.00 0.00 0.00 5.19
4826 8803 2.943033 CCTAAATTTCGTACCTGGGCTG 59.057 50.000 0.00 0.00 0.00 4.85
4827 8804 1.173913 AAATTTCGTACCTGGGCTGC 58.826 50.000 0.00 0.00 0.00 5.25
4828 8805 1.024579 AATTTCGTACCTGGGCTGCG 61.025 55.000 0.00 0.00 0.00 5.18
4829 8806 4.752879 TTCGTACCTGGGCTGCGC 62.753 66.667 10.06 10.06 0.00 6.09
4859 8836 3.900892 CGACGCCAGCCGACCTAT 61.901 66.667 0.00 0.00 41.02 2.57
4860 8837 2.499685 GACGCCAGCCGACCTATT 59.500 61.111 0.00 0.00 41.02 1.73
4861 8838 1.153429 GACGCCAGCCGACCTATTT 60.153 57.895 0.00 0.00 41.02 1.40
4862 8839 1.429148 GACGCCAGCCGACCTATTTG 61.429 60.000 0.00 0.00 41.02 2.32
4863 8840 2.823829 CGCCAGCCGACCTATTTGC 61.824 63.158 0.00 0.00 40.02 3.68
4864 8841 2.481471 GCCAGCCGACCTATTTGCC 61.481 63.158 0.00 0.00 0.00 4.52
4865 8842 2.180204 CCAGCCGACCTATTTGCCG 61.180 63.158 0.00 0.00 0.00 5.69
4866 8843 2.513897 AGCCGACCTATTTGCCGC 60.514 61.111 0.00 0.00 0.00 6.53
4867 8844 2.822255 GCCGACCTATTTGCCGCA 60.822 61.111 0.00 0.00 0.00 5.69
4868 8845 3.098555 CCGACCTATTTGCCGCAC 58.901 61.111 0.00 0.00 0.00 5.34
4869 8846 1.743623 CCGACCTATTTGCCGCACA 60.744 57.895 0.00 0.00 0.00 4.57
4870 8847 1.705337 CCGACCTATTTGCCGCACAG 61.705 60.000 0.00 0.00 0.00 3.66
4871 8848 1.429423 GACCTATTTGCCGCACAGC 59.571 57.895 0.00 0.00 0.00 4.40
4884 8861 2.072990 GCACAGCGCGTTAAATAGTC 57.927 50.000 8.43 0.00 0.00 2.59
4885 8862 1.392168 GCACAGCGCGTTAAATAGTCA 59.608 47.619 8.43 0.00 0.00 3.41
4886 8863 2.534939 GCACAGCGCGTTAAATAGTCAG 60.535 50.000 8.43 0.00 0.00 3.51
4887 8864 2.921121 CACAGCGCGTTAAATAGTCAGA 59.079 45.455 8.43 0.00 0.00 3.27
4888 8865 3.000674 CACAGCGCGTTAAATAGTCAGAG 60.001 47.826 8.43 0.00 0.00 3.35
4889 8866 2.034507 CAGCGCGTTAAATAGTCAGAGC 60.035 50.000 8.43 0.00 0.00 4.09
4890 8867 2.159226 AGCGCGTTAAATAGTCAGAGCT 60.159 45.455 8.43 0.00 0.00 4.09
4891 8868 2.603560 GCGCGTTAAATAGTCAGAGCTT 59.396 45.455 8.43 0.00 0.00 3.74
4892 8869 3.301899 GCGCGTTAAATAGTCAGAGCTTC 60.302 47.826 8.43 0.00 0.00 3.86
4893 8870 3.061797 CGCGTTAAATAGTCAGAGCTTCG 60.062 47.826 0.00 0.00 0.00 3.79
4894 8871 3.301899 GCGTTAAATAGTCAGAGCTTCGC 60.302 47.826 0.00 0.00 0.00 4.70
4895 8872 3.857665 CGTTAAATAGTCAGAGCTTCGCA 59.142 43.478 0.00 0.00 0.00 5.10
4896 8873 4.259451 CGTTAAATAGTCAGAGCTTCGCAC 60.259 45.833 0.00 0.00 0.00 5.34
4897 8874 3.319137 AAATAGTCAGAGCTTCGCACA 57.681 42.857 0.00 0.00 0.00 4.57
4898 8875 3.533606 AATAGTCAGAGCTTCGCACAT 57.466 42.857 0.00 0.00 0.00 3.21
4899 8876 2.284263 TAGTCAGAGCTTCGCACATG 57.716 50.000 0.00 0.00 0.00 3.21
4900 8877 0.319728 AGTCAGAGCTTCGCACATGT 59.680 50.000 0.00 0.00 0.00 3.21
4901 8878 0.718343 GTCAGAGCTTCGCACATGTC 59.282 55.000 0.00 0.00 0.00 3.06
4902 8879 0.733909 TCAGAGCTTCGCACATGTCG 60.734 55.000 0.00 3.20 0.00 4.35
4903 8880 2.097038 AGAGCTTCGCACATGTCGC 61.097 57.895 0.00 2.57 0.00 5.19
4904 8881 3.088500 GAGCTTCGCACATGTCGCC 62.089 63.158 12.62 5.32 0.00 5.54
4905 8882 4.166011 GCTTCGCACATGTCGCCC 62.166 66.667 12.62 2.35 0.00 6.13
4906 8883 2.741985 CTTCGCACATGTCGCCCA 60.742 61.111 12.62 0.48 0.00 5.36
4907 8884 2.046411 TTCGCACATGTCGCCCAT 60.046 55.556 12.62 0.00 0.00 4.00
4908 8885 1.647545 CTTCGCACATGTCGCCCATT 61.648 55.000 12.62 0.00 0.00 3.16
4909 8886 0.391793 TTCGCACATGTCGCCCATTA 60.392 50.000 12.62 0.00 0.00 1.90
4910 8887 1.087202 TCGCACATGTCGCCCATTAC 61.087 55.000 12.62 0.00 0.00 1.89
4911 8888 1.089481 CGCACATGTCGCCCATTACT 61.089 55.000 12.62 0.00 0.00 2.24
4912 8889 1.094785 GCACATGTCGCCCATTACTT 58.905 50.000 0.00 0.00 0.00 2.24
4913 8890 1.202177 GCACATGTCGCCCATTACTTG 60.202 52.381 0.00 0.00 0.00 3.16
4914 8891 1.401552 CACATGTCGCCCATTACTTGG 59.598 52.381 0.00 0.00 46.00 3.61
4915 8892 0.381801 CATGTCGCCCATTACTTGGC 59.618 55.000 0.00 0.00 44.97 4.52
4916 8893 0.751643 ATGTCGCCCATTACTTGGCC 60.752 55.000 0.00 0.00 45.07 5.36
4917 8894 1.377987 GTCGCCCATTACTTGGCCA 60.378 57.895 0.00 0.00 45.07 5.36
4918 8895 1.077787 TCGCCCATTACTTGGCCAG 60.078 57.895 5.11 2.72 45.07 4.85
4919 8896 2.774799 CGCCCATTACTTGGCCAGC 61.775 63.158 5.11 1.76 45.07 4.85
4920 8897 1.380380 GCCCATTACTTGGCCAGCT 60.380 57.895 5.11 0.00 44.97 4.24
4921 8898 1.387295 GCCCATTACTTGGCCAGCTC 61.387 60.000 5.11 0.00 44.97 4.09
4922 8899 1.097547 CCCATTACTTGGCCAGCTCG 61.098 60.000 5.11 0.00 44.97 5.03
4923 8900 0.392998 CCATTACTTGGCCAGCTCGT 60.393 55.000 5.11 4.90 39.09 4.18
4924 8901 1.453155 CATTACTTGGCCAGCTCGTT 58.547 50.000 5.11 0.00 0.00 3.85
4925 8902 1.812571 CATTACTTGGCCAGCTCGTTT 59.187 47.619 5.11 0.00 0.00 3.60
4926 8903 1.975660 TTACTTGGCCAGCTCGTTTT 58.024 45.000 5.11 0.00 0.00 2.43
4927 8904 1.519408 TACTTGGCCAGCTCGTTTTC 58.481 50.000 5.11 0.00 0.00 2.29
4928 8905 1.207593 CTTGGCCAGCTCGTTTTCG 59.792 57.895 5.11 0.00 45.64 3.46
4929 8906 1.507141 CTTGGCCAGCTCGTTTTCGT 61.507 55.000 5.11 0.00 44.46 3.85
4930 8907 1.098712 TTGGCCAGCTCGTTTTCGTT 61.099 50.000 5.11 0.00 44.46 3.85
4931 8908 1.098712 TGGCCAGCTCGTTTTCGTTT 61.099 50.000 0.00 0.00 44.46 3.60
4932 8909 0.385598 GGCCAGCTCGTTTTCGTTTC 60.386 55.000 0.00 0.00 44.46 2.78
4933 8910 0.306533 GCCAGCTCGTTTTCGTTTCA 59.693 50.000 0.00 0.00 44.46 2.69
4934 8911 1.069227 GCCAGCTCGTTTTCGTTTCAT 60.069 47.619 0.00 0.00 44.46 2.57
4935 8912 2.604614 GCCAGCTCGTTTTCGTTTCATT 60.605 45.455 0.00 0.00 44.46 2.57
4936 8913 3.226347 CCAGCTCGTTTTCGTTTCATTC 58.774 45.455 0.00 0.00 44.46 2.67
4937 8914 3.226347 CAGCTCGTTTTCGTTTCATTCC 58.774 45.455 0.00 0.00 44.46 3.01
4938 8915 2.875933 AGCTCGTTTTCGTTTCATTCCA 59.124 40.909 0.00 0.00 44.46 3.53
4939 8916 3.502211 AGCTCGTTTTCGTTTCATTCCAT 59.498 39.130 0.00 0.00 44.46 3.41
4940 8917 4.693566 AGCTCGTTTTCGTTTCATTCCATA 59.306 37.500 0.00 0.00 44.46 2.74
4941 8918 5.354234 AGCTCGTTTTCGTTTCATTCCATAT 59.646 36.000 0.00 0.00 44.46 1.78
4942 8919 6.027749 GCTCGTTTTCGTTTCATTCCATATT 58.972 36.000 0.00 0.00 44.46 1.28
4943 8920 6.194692 GCTCGTTTTCGTTTCATTCCATATTC 59.805 38.462 0.00 0.00 44.46 1.75
4944 8921 7.372451 TCGTTTTCGTTTCATTCCATATTCT 57.628 32.000 0.00 0.00 44.46 2.40
4945 8922 7.240674 TCGTTTTCGTTTCATTCCATATTCTG 58.759 34.615 0.00 0.00 44.46 3.02
4946 8923 7.021196 CGTTTTCGTTTCATTCCATATTCTGT 58.979 34.615 0.00 0.00 38.65 3.41
4947 8924 7.537306 CGTTTTCGTTTCATTCCATATTCTGTT 59.463 33.333 0.00 0.00 38.65 3.16
4948 8925 9.191995 GTTTTCGTTTCATTCCATATTCTGTTT 57.808 29.630 0.00 0.00 0.00 2.83
4949 8926 9.757227 TTTTCGTTTCATTCCATATTCTGTTTT 57.243 25.926 0.00 0.00 0.00 2.43
4950 8927 9.757227 TTTCGTTTCATTCCATATTCTGTTTTT 57.243 25.926 0.00 0.00 0.00 1.94
4972 8949 8.502105 TTTTTACGTTCCTTTCTCTTCTTCTT 57.498 30.769 0.00 0.00 0.00 2.52
4973 8950 8.502105 TTTTACGTTCCTTTCTCTTCTTCTTT 57.498 30.769 0.00 0.00 0.00 2.52
4974 8951 7.710766 TTACGTTCCTTTCTCTTCTTCTTTC 57.289 36.000 0.00 0.00 0.00 2.62
4975 8952 5.057819 ACGTTCCTTTCTCTTCTTCTTTCC 58.942 41.667 0.00 0.00 0.00 3.13
4976 8953 5.163290 ACGTTCCTTTCTCTTCTTCTTTCCT 60.163 40.000 0.00 0.00 0.00 3.36
4977 8954 6.041751 ACGTTCCTTTCTCTTCTTCTTTCCTA 59.958 38.462 0.00 0.00 0.00 2.94
4978 8955 7.100409 CGTTCCTTTCTCTTCTTCTTTCCTAT 58.900 38.462 0.00 0.00 0.00 2.57
4979 8956 7.604545 CGTTCCTTTCTCTTCTTCTTTCCTATT 59.395 37.037 0.00 0.00 0.00 1.73
4980 8957 9.290988 GTTCCTTTCTCTTCTTCTTTCCTATTT 57.709 33.333 0.00 0.00 0.00 1.40
4981 8958 9.508642 TTCCTTTCTCTTCTTCTTTCCTATTTC 57.491 33.333 0.00 0.00 0.00 2.17
4982 8959 8.885346 TCCTTTCTCTTCTTCTTTCCTATTTCT 58.115 33.333 0.00 0.00 0.00 2.52
4983 8960 9.513906 CCTTTCTCTTCTTCTTTCCTATTTCTT 57.486 33.333 0.00 0.00 0.00 2.52
4989 8966 9.067986 TCTTCTTCTTTCCTATTTCTTTTGACC 57.932 33.333 0.00 0.00 0.00 4.02
4990 8967 7.761038 TCTTCTTTCCTATTTCTTTTGACCC 57.239 36.000 0.00 0.00 0.00 4.46
4991 8968 7.526918 TCTTCTTTCCTATTTCTTTTGACCCT 58.473 34.615 0.00 0.00 0.00 4.34
4992 8969 8.004801 TCTTCTTTCCTATTTCTTTTGACCCTT 58.995 33.333 0.00 0.00 0.00 3.95
4993 8970 8.547481 TTCTTTCCTATTTCTTTTGACCCTTT 57.453 30.769 0.00 0.00 0.00 3.11
4994 8971 8.547481 TCTTTCCTATTTCTTTTGACCCTTTT 57.453 30.769 0.00 0.00 0.00 2.27
4995 8972 8.988060 TCTTTCCTATTTCTTTTGACCCTTTTT 58.012 29.630 0.00 0.00 0.00 1.94
4996 8973 9.261180 CTTTCCTATTTCTTTTGACCCTTTTTC 57.739 33.333 0.00 0.00 0.00 2.29
4997 8974 7.297936 TCCTATTTCTTTTGACCCTTTTTCC 57.702 36.000 0.00 0.00 0.00 3.13
4998 8975 6.269077 TCCTATTTCTTTTGACCCTTTTTCCC 59.731 38.462 0.00 0.00 0.00 3.97
4999 8976 6.270000 CCTATTTCTTTTGACCCTTTTTCCCT 59.730 38.462 0.00 0.00 0.00 4.20
5000 8977 6.575244 ATTTCTTTTGACCCTTTTTCCCTT 57.425 33.333 0.00 0.00 0.00 3.95
5001 8978 5.607939 TTCTTTTGACCCTTTTTCCCTTC 57.392 39.130 0.00 0.00 0.00 3.46
5002 8979 3.634910 TCTTTTGACCCTTTTTCCCTTCG 59.365 43.478 0.00 0.00 0.00 3.79
5003 8980 3.300239 TTTGACCCTTTTTCCCTTCGA 57.700 42.857 0.00 0.00 0.00 3.71
5004 8981 3.300239 TTGACCCTTTTTCCCTTCGAA 57.700 42.857 0.00 0.00 0.00 3.71
5005 8982 2.858745 TGACCCTTTTTCCCTTCGAAG 58.141 47.619 18.51 18.51 0.00 3.79
5006 8983 2.173996 TGACCCTTTTTCCCTTCGAAGT 59.826 45.455 23.03 1.70 0.00 3.01
5007 8984 3.220110 GACCCTTTTTCCCTTCGAAGTT 58.780 45.455 23.03 0.00 0.00 2.66
5008 8985 3.635373 GACCCTTTTTCCCTTCGAAGTTT 59.365 43.478 23.03 0.00 0.00 2.66
5009 8986 4.795469 ACCCTTTTTCCCTTCGAAGTTTA 58.205 39.130 23.03 5.88 0.00 2.01
5010 8987 4.825634 ACCCTTTTTCCCTTCGAAGTTTAG 59.174 41.667 23.03 8.18 0.00 1.85
5011 8988 4.825634 CCCTTTTTCCCTTCGAAGTTTAGT 59.174 41.667 23.03 0.00 0.00 2.24
5012 8989 5.301045 CCCTTTTTCCCTTCGAAGTTTAGTT 59.699 40.000 23.03 0.00 0.00 2.24
5013 8990 6.183360 CCCTTTTTCCCTTCGAAGTTTAGTTT 60.183 38.462 23.03 0.00 0.00 2.66
5014 8991 7.013559 CCCTTTTTCCCTTCGAAGTTTAGTTTA 59.986 37.037 23.03 1.91 0.00 2.01
5015 8992 8.573885 CCTTTTTCCCTTCGAAGTTTAGTTTAT 58.426 33.333 23.03 0.00 0.00 1.40
5016 8993 9.961265 CTTTTTCCCTTCGAAGTTTAGTTTATT 57.039 29.630 23.03 0.00 0.00 1.40
5060 9037 9.603921 ATTCAAAAGAAAAAGCTCAGAATTTCA 57.396 25.926 0.00 0.00 34.91 2.69
5061 9038 9.603921 TTCAAAAGAAAAAGCTCAGAATTTCAT 57.396 25.926 0.00 0.00 34.91 2.57
5067 9044 9.565213 AGAAAAAGCTCAGAATTTCATATTTCG 57.435 29.630 0.00 0.00 34.91 3.46
5068 9045 9.346725 GAAAAAGCTCAGAATTTCATATTTCGT 57.653 29.630 0.00 0.00 33.18 3.85
5069 9046 9.696917 AAAAAGCTCAGAATTTCATATTTCGTT 57.303 25.926 0.00 0.00 0.00 3.85
5070 9047 8.902040 AAAGCTCAGAATTTCATATTTCGTTC 57.098 30.769 0.00 0.00 0.00 3.95
5071 9048 7.615582 AGCTCAGAATTTCATATTTCGTTCA 57.384 32.000 0.00 0.00 0.00 3.18
5072 9049 8.044060 AGCTCAGAATTTCATATTTCGTTCAA 57.956 30.769 0.00 0.00 0.00 2.69
5073 9050 8.514594 AGCTCAGAATTTCATATTTCGTTCAAA 58.485 29.630 0.00 0.00 0.00 2.69
5074 9051 9.294030 GCTCAGAATTTCATATTTCGTTCAAAT 57.706 29.630 0.00 0.00 38.35 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.860605 TGGCGTCATCCCCCATCG 61.861 66.667 0.00 0.00 0.00 3.84
39 40 2.802787 TTTACAATTGCCGGTTGTGG 57.197 45.000 16.83 1.61 39.88 4.17
40 41 2.474735 GCTTTTACAATTGCCGGTTGTG 59.525 45.455 16.83 7.03 39.88 3.33
41 42 2.547007 GGCTTTTACAATTGCCGGTTGT 60.547 45.455 12.90 12.90 42.12 3.32
51 52 7.630082 TCTATACCAGTTGAGGCTTTTACAAT 58.370 34.615 0.00 0.00 0.00 2.71
62 63 9.665264 GTTGAAACTTTTTCTATACCAGTTGAG 57.335 33.333 0.68 0.00 0.00 3.02
70 71 9.974980 TTTCCATGGTTGAAACTTTTTCTATAC 57.025 29.630 12.58 0.00 0.00 1.47
106 111 0.977395 AGCTTTTCCTCTACGCCAGT 59.023 50.000 0.00 0.00 0.00 4.00
108 113 1.671850 CGAAGCTTTTCCTCTACGCCA 60.672 52.381 0.00 0.00 0.00 5.69
128 133 2.349912 GCTGAAGCTTTTCTCCACGTTC 60.350 50.000 0.00 0.00 38.21 3.95
138 143 1.975660 TTACACGGGCTGAAGCTTTT 58.024 45.000 0.00 0.00 41.70 2.27
148 153 3.270962 TCGAAACATTTTTACACGGGC 57.729 42.857 0.00 0.00 0.00 6.13
161 167 5.851177 GCTTTTTCTGATTTCGATCGAAACA 59.149 36.000 37.63 31.87 45.34 2.83
172 178 7.725251 TGTATGGTTGAAGCTTTTTCTGATTT 58.275 30.769 0.00 0.00 0.00 2.17
175 181 6.061441 TCTGTATGGTTGAAGCTTTTTCTGA 58.939 36.000 0.00 0.00 0.00 3.27
176 182 6.317789 TCTGTATGGTTGAAGCTTTTTCTG 57.682 37.500 0.00 0.00 0.00 3.02
177 183 6.959639 TTCTGTATGGTTGAAGCTTTTTCT 57.040 33.333 0.00 0.00 0.00 2.52
178 184 8.419076 TTTTTCTGTATGGTTGAAGCTTTTTC 57.581 30.769 0.00 0.00 0.00 2.29
221 228 4.487714 AGATTCACGATGGAAGCCTTTA 57.512 40.909 0.00 0.00 33.81 1.85
225 232 2.632377 TGAAGATTCACGATGGAAGCC 58.368 47.619 0.00 0.00 33.81 4.35
233 240 2.550606 CCCGGTTTTTGAAGATTCACGA 59.449 45.455 0.00 0.00 36.83 4.35
245 252 2.596338 CAGACGGCCCCGGTTTTT 60.596 61.111 11.83 0.00 44.69 1.94
281 288 4.124351 CCGTAGCTTCGGGCGTCA 62.124 66.667 22.88 0.00 45.88 4.35
288 295 2.509336 CCACAGGCCGTAGCTTCG 60.509 66.667 5.67 5.67 39.73 3.79
301 308 2.986979 CAGCAGCACCATGCCACA 60.987 61.111 0.00 0.00 46.52 4.17
322 329 1.151777 CCGCCATAGTAACACGCCTG 61.152 60.000 0.00 0.00 0.00 4.85
323 330 1.143183 CCGCCATAGTAACACGCCT 59.857 57.895 0.00 0.00 0.00 5.52
325 332 2.867091 CGCCGCCATAGTAACACGC 61.867 63.158 0.00 0.00 0.00 5.34
332 339 0.102481 CAACTAGTCGCCGCCATAGT 59.898 55.000 0.00 0.00 0.00 2.12
336 343 2.344981 TAGCAACTAGTCGCCGCCA 61.345 57.895 1.16 0.00 0.00 5.69
343 350 2.490903 TCCGTCCTTGTAGCAACTAGTC 59.509 50.000 0.00 0.00 0.00 2.59
354 361 1.599047 CTGATGCCTCCGTCCTTGT 59.401 57.895 0.00 0.00 0.00 3.16
358 365 4.899239 CGCCTGATGCCTCCGTCC 62.899 72.222 0.00 0.00 36.24 4.79
367 374 2.256174 CATTTTGCAAGACGCCTGATG 58.744 47.619 0.00 0.00 41.33 3.07
378 385 0.596083 CAACGTCCGCCATTTTGCAA 60.596 50.000 0.00 0.00 0.00 4.08
380 387 2.371923 GCAACGTCCGCCATTTTGC 61.372 57.895 0.00 0.00 36.14 3.68
382 389 0.519961 GTAGCAACGTCCGCCATTTT 59.480 50.000 6.32 0.00 0.00 1.82
402 409 4.148825 GCATCCAGTCGTCGCCCT 62.149 66.667 0.00 0.00 0.00 5.19
405 414 3.558411 GCAGCATCCAGTCGTCGC 61.558 66.667 0.00 0.00 0.00 5.19
433 442 3.171828 TTCCTCGCCGGTTTCAGCA 62.172 57.895 1.90 0.00 0.00 4.41
434 443 2.358247 TTCCTCGCCGGTTTCAGC 60.358 61.111 1.90 0.00 0.00 4.26
435 444 1.741770 CCTTCCTCGCCGGTTTCAG 60.742 63.158 1.90 0.00 0.00 3.02
436 445 2.345991 CCTTCCTCGCCGGTTTCA 59.654 61.111 1.90 0.00 0.00 2.69
437 446 3.125573 GCCTTCCTCGCCGGTTTC 61.126 66.667 1.90 0.00 0.00 2.78
448 457 3.254024 TTCCAGCAGGACGCCTTCC 62.254 63.158 0.00 0.00 45.73 3.46
449 458 2.035442 GTTCCAGCAGGACGCCTTC 61.035 63.158 0.00 0.00 45.73 3.46
450 459 2.032681 GTTCCAGCAGGACGCCTT 59.967 61.111 0.00 0.00 45.73 4.35
451 460 4.021925 GGTTCCAGCAGGACGCCT 62.022 66.667 0.00 0.00 45.73 5.52
454 463 4.003788 ACCGGTTCCAGCAGGACG 62.004 66.667 0.00 0.00 45.73 4.79
455 464 2.358737 CACCGGTTCCAGCAGGAC 60.359 66.667 2.97 0.00 45.73 3.85
456 465 3.636231 CCACCGGTTCCAGCAGGA 61.636 66.667 2.97 0.00 43.93 3.86
457 466 4.722700 CCCACCGGTTCCAGCAGG 62.723 72.222 2.97 0.00 0.00 4.85
458 467 4.722700 CCCCACCGGTTCCAGCAG 62.723 72.222 2.97 0.00 0.00 4.24
469 478 4.410400 CCACTCGCCTTCCCCACC 62.410 72.222 0.00 0.00 0.00 4.61
499 508 3.324268 CACTCCATGGATATGAGAGTGCT 59.676 47.826 16.63 0.00 45.10 4.40
502 554 3.311990 TGCACTCCATGGATATGAGAGT 58.688 45.455 23.94 11.57 41.43 3.24
533 585 5.768662 CCATCTTCTACTATTGACGTCCCTA 59.231 44.000 14.12 3.57 0.00 3.53
566 618 4.307432 CTCCTACTCTTTCAACGCAGAAA 58.693 43.478 3.30 3.30 36.21 2.52
568 620 2.352814 GCTCCTACTCTTTCAACGCAGA 60.353 50.000 0.00 0.00 0.00 4.26
569 621 1.996191 GCTCCTACTCTTTCAACGCAG 59.004 52.381 0.00 0.00 0.00 5.18
570 622 1.337823 GGCTCCTACTCTTTCAACGCA 60.338 52.381 0.00 0.00 0.00 5.24
571 623 1.066787 AGGCTCCTACTCTTTCAACGC 60.067 52.381 0.00 0.00 0.00 4.84
577 631 2.860041 TCCTCCTAGGCTCCTACTCTTT 59.140 50.000 2.96 0.00 34.61 2.52
578 632 2.504905 TCCTCCTAGGCTCCTACTCTT 58.495 52.381 2.96 0.00 34.61 2.85
582 636 2.091775 TGTCTTCCTCCTAGGCTCCTAC 60.092 54.545 2.96 0.00 34.61 3.18
603 657 8.647143 ACGATTGACTTCAAAAATGAATTGTT 57.353 26.923 0.00 0.00 39.55 2.83
606 660 7.537306 CCGTACGATTGACTTCAAAAATGAATT 59.463 33.333 18.76 0.00 39.55 2.17
617 672 5.975344 TGATTCATACCGTACGATTGACTTC 59.025 40.000 18.76 14.30 0.00 3.01
634 689 7.298122 GCGGTCATACGATTAAAATGATTCAT 58.702 34.615 0.00 0.00 32.60 2.57
635 690 6.293190 GGCGGTCATACGATTAAAATGATTCA 60.293 38.462 0.00 0.00 32.60 2.57
641 696 4.272504 CACTGGCGGTCATACGATTAAAAT 59.727 41.667 0.00 0.00 35.47 1.82
650 705 1.153429 GGTCCACTGGCGGTCATAC 60.153 63.158 0.00 0.00 0.00 2.39
652 707 4.082523 CGGTCCACTGGCGGTCAT 62.083 66.667 0.00 0.00 0.00 3.06
659 714 4.323477 TTTCGGCCGGTCCACTGG 62.323 66.667 27.83 0.00 45.30 4.00
660 715 2.521958 ATCTTTCGGCCGGTCCACTG 62.522 60.000 27.83 8.95 34.01 3.66
662 717 1.366854 GAATCTTTCGGCCGGTCCAC 61.367 60.000 27.83 7.58 34.01 4.02
664 719 3.809423 GAATCTTTCGGCCGGTCC 58.191 61.111 27.83 2.02 0.00 4.46
719 774 4.021544 ACGTACCGTGGTGGATAGTAAAAA 60.022 41.667 0.72 0.00 42.00 1.94
720 775 3.509575 ACGTACCGTGGTGGATAGTAAAA 59.490 43.478 0.72 0.00 42.00 1.52
721 776 3.088532 ACGTACCGTGGTGGATAGTAAA 58.911 45.455 0.72 0.00 42.00 2.01
722 777 2.682856 GACGTACCGTGGTGGATAGTAA 59.317 50.000 0.72 0.00 41.37 2.24
750 805 1.140161 GTACGTGCGGGTGCTGATA 59.860 57.895 0.00 0.00 43.34 2.15
817 872 6.580041 CGTTCGTTATACAGAGTGTAAACTGT 59.420 38.462 0.00 0.00 46.81 3.55
824 879 5.112220 TGTTCGTTCGTTATACAGAGTGT 57.888 39.130 0.00 0.00 0.00 3.55
861 916 7.557719 TGCATGGATAGATAGATAACTCATCGA 59.442 37.037 0.00 0.00 38.81 3.59
994 1049 3.004419 GTGTTGCTGATGATGATGGATGG 59.996 47.826 0.00 0.00 0.00 3.51
995 1050 3.303791 CGTGTTGCTGATGATGATGGATG 60.304 47.826 0.00 0.00 0.00 3.51
996 1051 2.876550 CGTGTTGCTGATGATGATGGAT 59.123 45.455 0.00 0.00 0.00 3.41
997 1052 2.282407 CGTGTTGCTGATGATGATGGA 58.718 47.619 0.00 0.00 0.00 3.41
1088 1146 2.042831 GGGATGCTCACTGTGGTGC 61.043 63.158 8.11 12.88 42.72 5.01
1233 1291 2.267227 GAAGCGACGCGTTGCAGTAG 62.267 60.000 43.20 17.90 42.40 2.57
1476 1534 1.891178 TGATGACGTTAGCGAAGACG 58.109 50.000 5.81 0.00 44.34 4.18
1528 1586 1.144057 GTACCTGGCCGATGGACTG 59.856 63.158 15.00 0.00 0.00 3.51
1589 1661 9.620259 TTAGACGCACTCTATATGATGAGATAT 57.380 33.333 8.53 0.00 31.11 1.63
1590 1662 8.884726 GTTAGACGCACTCTATATGATGAGATA 58.115 37.037 8.53 0.00 31.11 1.98
1593 1665 6.903419 TGTTAGACGCACTCTATATGATGAG 58.097 40.000 0.00 0.00 31.11 2.90
1594 1666 6.877611 TGTTAGACGCACTCTATATGATGA 57.122 37.500 0.00 0.00 31.11 2.92
1595 1667 6.918022 TGTTGTTAGACGCACTCTATATGATG 59.082 38.462 0.00 0.00 31.11 3.07
1596 1668 7.013369 TCTGTTGTTAGACGCACTCTATATGAT 59.987 37.037 0.00 0.00 31.11 2.45
1597 1669 6.317893 TCTGTTGTTAGACGCACTCTATATGA 59.682 38.462 0.00 0.00 31.11 2.15
1598 1670 6.495706 TCTGTTGTTAGACGCACTCTATATG 58.504 40.000 0.00 0.00 31.11 1.78
1599 1671 6.694877 TCTGTTGTTAGACGCACTCTATAT 57.305 37.500 0.00 0.00 31.11 0.86
1600 1672 6.542735 AGATCTGTTGTTAGACGCACTCTATA 59.457 38.462 0.00 0.00 31.11 1.31
1601 1673 5.358442 AGATCTGTTGTTAGACGCACTCTAT 59.642 40.000 0.00 0.00 31.11 1.98
1604 1676 3.610242 CAGATCTGTTGTTAGACGCACTC 59.390 47.826 14.95 0.00 0.00 3.51
1612 1684 3.057969 TGCCACCAGATCTGTTGTTAG 57.942 47.619 21.11 7.36 0.00 2.34
2254 2367 3.055719 CATGACGGGCTTGCCGTT 61.056 61.111 6.98 0.00 44.16 4.44
2298 2411 1.903404 CTTGCCCTTTTGGACGGCT 60.903 57.895 0.00 0.00 43.42 5.52
2307 2420 4.980805 TCGCGCGTCTTGCCCTTT 62.981 61.111 30.98 0.00 42.08 3.11
2866 3037 0.459237 GCCGCGATATGGAGGATCTG 60.459 60.000 8.23 0.00 33.73 2.90
3090 3261 7.345422 TGTGTCAGAAAATCAGAATCCAAAA 57.655 32.000 0.00 0.00 0.00 2.44
3091 3262 6.957920 TGTGTCAGAAAATCAGAATCCAAA 57.042 33.333 0.00 0.00 0.00 3.28
3092 3263 6.128200 CGATGTGTCAGAAAATCAGAATCCAA 60.128 38.462 0.00 0.00 0.00 3.53
3120 3291 6.182627 TCATGCAATTACATCAGAAGGTTCT 58.817 36.000 0.00 0.00 38.25 3.01
3125 3296 6.535274 TCGATCATGCAATTACATCAGAAG 57.465 37.500 0.00 0.00 0.00 2.85
3167 3338 5.883115 TGTACTTGTTCTTGAACCATGTCAA 59.117 36.000 10.51 0.00 36.15 3.18
3247 3418 1.679977 CTTGTACGTCCTCCCCGGA 60.680 63.158 0.73 0.00 40.30 5.14
3259 3430 1.622232 GCCCGTCGTAGAACTTGTAC 58.378 55.000 0.00 0.00 39.69 2.90
3997 4171 6.763303 TTGCCATATATATATAGCAACGCG 57.237 37.500 25.38 3.53 40.61 6.01
4031 4308 3.044286 GTCTAGATAAGAAACGCCGAGC 58.956 50.000 0.00 0.00 35.47 5.03
4035 4312 6.663944 AAATGTGTCTAGATAAGAAACGCC 57.336 37.500 0.00 0.00 44.46 5.68
4055 4332 4.261197 GCACGGTTCTCACTGAAGAAAAAT 60.261 41.667 0.00 0.00 37.04 1.82
4056 4333 3.064820 GCACGGTTCTCACTGAAGAAAAA 59.935 43.478 0.00 0.00 37.04 1.94
4072 4349 3.656559 ACGTCTGTTTAATAAGCACGGT 58.343 40.909 5.28 0.00 0.00 4.83
4088 4365 6.323996 TCATCTCCATGTTTATAGGAACGTCT 59.676 38.462 0.00 0.00 32.18 4.18
4091 4368 8.523658 TCTATCATCTCCATGTTTATAGGAACG 58.476 37.037 0.00 0.00 32.18 3.95
4285 4567 8.879342 AGAAAGATCATACTAACTTTGATCGG 57.121 34.615 0.00 0.00 46.60 4.18
4322 4663 5.876357 ACCCAAAGAGCACAAAATAGTAGA 58.124 37.500 0.00 0.00 0.00 2.59
4434 8408 5.236478 CGACTCTAAAACCACACAACTTGAT 59.764 40.000 0.00 0.00 0.00 2.57
4569 8543 1.409427 GCATTCTACGGCTCCACTACT 59.591 52.381 0.00 0.00 0.00 2.57
4584 8558 1.237285 ACACCGAGTGGCAAGCATTC 61.237 55.000 8.57 0.00 39.70 2.67
4604 8578 3.383620 AAGCATCTCTAATGGAGCGAG 57.616 47.619 0.00 0.00 41.60 5.03
4685 8662 6.123651 TGTCAGTAACCAAGGTACAATTTGT 58.876 36.000 7.30 7.30 0.00 2.83
4708 8685 4.235939 TGTTGGTGAACGGATGAAAATG 57.764 40.909 0.00 0.00 34.49 2.32
4709 8686 4.927978 TTGTTGGTGAACGGATGAAAAT 57.072 36.364 0.00 0.00 34.49 1.82
4710 8687 4.720649 TTTGTTGGTGAACGGATGAAAA 57.279 36.364 0.00 0.00 34.49 2.29
4711 8688 4.720649 TTTTGTTGGTGAACGGATGAAA 57.279 36.364 0.00 0.00 34.49 2.69
4712 8689 4.927978 ATTTTGTTGGTGAACGGATGAA 57.072 36.364 0.00 0.00 34.49 2.57
4713 8690 4.098654 ACAATTTTGTTGGTGAACGGATGA 59.901 37.500 0.00 0.00 38.47 2.92
4714 8691 4.367450 ACAATTTTGTTGGTGAACGGATG 58.633 39.130 0.00 0.00 38.47 3.51
4715 8692 4.664150 ACAATTTTGTTGGTGAACGGAT 57.336 36.364 0.00 0.00 38.47 4.18
4716 8693 5.776173 ATACAATTTTGTTGGTGAACGGA 57.224 34.783 0.63 0.00 42.35 4.69
4717 8694 6.836577 AAATACAATTTTGTTGGTGAACGG 57.163 33.333 0.63 0.00 42.35 4.44
4739 8716 7.925043 TTAGTACCGCCTCATCAAATAAAAA 57.075 32.000 0.00 0.00 0.00 1.94
4740 8717 7.608761 AGTTTAGTACCGCCTCATCAAATAAAA 59.391 33.333 0.00 0.00 0.00 1.52
4741 8718 7.107542 AGTTTAGTACCGCCTCATCAAATAAA 58.892 34.615 0.00 0.00 0.00 1.40
4742 8719 6.646267 AGTTTAGTACCGCCTCATCAAATAA 58.354 36.000 0.00 0.00 0.00 1.40
4743 8720 6.229936 AGTTTAGTACCGCCTCATCAAATA 57.770 37.500 0.00 0.00 0.00 1.40
4744 8721 5.099042 AGTTTAGTACCGCCTCATCAAAT 57.901 39.130 0.00 0.00 0.00 2.32
4745 8722 4.546829 AGTTTAGTACCGCCTCATCAAA 57.453 40.909 0.00 0.00 0.00 2.69
4746 8723 4.546829 AAGTTTAGTACCGCCTCATCAA 57.453 40.909 0.00 0.00 0.00 2.57
4747 8724 4.546829 AAAGTTTAGTACCGCCTCATCA 57.453 40.909 0.00 0.00 0.00 3.07
4748 8725 6.456584 GCTTAAAAGTTTAGTACCGCCTCATC 60.457 42.308 0.00 0.00 0.00 2.92
4749 8726 5.353400 GCTTAAAAGTTTAGTACCGCCTCAT 59.647 40.000 0.00 0.00 0.00 2.90
4750 8727 4.692155 GCTTAAAAGTTTAGTACCGCCTCA 59.308 41.667 0.00 0.00 0.00 3.86
4751 8728 4.201656 CGCTTAAAAGTTTAGTACCGCCTC 60.202 45.833 0.00 0.00 0.00 4.70
4752 8729 3.681417 CGCTTAAAAGTTTAGTACCGCCT 59.319 43.478 0.00 0.00 0.00 5.52
4753 8730 3.433274 ACGCTTAAAAGTTTAGTACCGCC 59.567 43.478 0.00 0.00 0.00 6.13
4754 8731 4.652175 ACGCTTAAAAGTTTAGTACCGC 57.348 40.909 0.00 0.00 0.00 5.68
4755 8732 6.214205 TGAACGCTTAAAAGTTTAGTACCG 57.786 37.500 0.00 0.00 0.00 4.02
4756 8733 7.955864 CAGATGAACGCTTAAAAGTTTAGTACC 59.044 37.037 0.00 0.00 0.00 3.34
4757 8734 7.477733 GCAGATGAACGCTTAAAAGTTTAGTAC 59.522 37.037 0.00 0.00 0.00 2.73
4758 8735 7.386848 AGCAGATGAACGCTTAAAAGTTTAGTA 59.613 33.333 0.00 0.00 33.81 1.82
4759 8736 6.204882 AGCAGATGAACGCTTAAAAGTTTAGT 59.795 34.615 0.00 0.00 33.81 2.24
4760 8737 6.603095 AGCAGATGAACGCTTAAAAGTTTAG 58.397 36.000 0.00 0.00 33.81 1.85
4761 8738 6.554334 AGCAGATGAACGCTTAAAAGTTTA 57.446 33.333 0.00 0.00 33.81 2.01
4762 8739 5.438761 AGCAGATGAACGCTTAAAAGTTT 57.561 34.783 0.00 0.00 33.81 2.66
4763 8740 5.932303 TCTAGCAGATGAACGCTTAAAAGTT 59.068 36.000 0.00 0.00 39.70 2.66
4764 8741 5.479306 TCTAGCAGATGAACGCTTAAAAGT 58.521 37.500 0.00 0.00 39.70 2.66
4765 8742 6.408858 TTCTAGCAGATGAACGCTTAAAAG 57.591 37.500 0.00 0.00 39.70 2.27
4766 8743 6.795098 TTTCTAGCAGATGAACGCTTAAAA 57.205 33.333 0.00 0.00 39.70 1.52
4767 8744 6.649141 TCTTTTCTAGCAGATGAACGCTTAAA 59.351 34.615 0.00 0.00 39.70 1.52
4768 8745 6.163476 TCTTTTCTAGCAGATGAACGCTTAA 58.837 36.000 0.00 0.00 39.70 1.85
4769 8746 5.720202 TCTTTTCTAGCAGATGAACGCTTA 58.280 37.500 0.00 0.00 39.70 3.09
4770 8747 4.569943 TCTTTTCTAGCAGATGAACGCTT 58.430 39.130 0.00 0.00 39.70 4.68
4771 8748 4.193826 TCTTTTCTAGCAGATGAACGCT 57.806 40.909 0.00 0.00 42.34 5.07
4772 8749 4.928661 TTCTTTTCTAGCAGATGAACGC 57.071 40.909 0.00 0.00 0.00 4.84
4773 8750 6.300902 CGTTTTTCTTTTCTAGCAGATGAACG 59.699 38.462 13.72 13.72 34.37 3.95
4774 8751 7.132863 ACGTTTTTCTTTTCTAGCAGATGAAC 58.867 34.615 0.00 0.00 0.00 3.18
4775 8752 7.259290 ACGTTTTTCTTTTCTAGCAGATGAA 57.741 32.000 0.00 0.00 0.00 2.57
4776 8753 6.861065 ACGTTTTTCTTTTCTAGCAGATGA 57.139 33.333 0.00 0.00 0.00 2.92
4777 8754 7.914537 AAACGTTTTTCTTTTCTAGCAGATG 57.085 32.000 7.96 0.00 0.00 2.90
4779 8756 9.659830 GATAAAACGTTTTTCTTTTCTAGCAGA 57.340 29.630 29.42 8.41 0.00 4.26
4780 8757 8.902735 GGATAAAACGTTTTTCTTTTCTAGCAG 58.097 33.333 29.42 0.00 0.00 4.24
4781 8758 8.626526 AGGATAAAACGTTTTTCTTTTCTAGCA 58.373 29.630 29.42 9.03 0.00 3.49
4790 8767 9.955208 ACGAAATTTAGGATAAAACGTTTTTCT 57.045 25.926 29.42 23.65 0.00 2.52
4793 8770 9.611284 GGTACGAAATTTAGGATAAAACGTTTT 57.389 29.630 27.65 27.65 33.72 2.43
4794 8771 9.002600 AGGTACGAAATTTAGGATAAAACGTTT 57.997 29.630 7.96 7.96 33.72 3.60
4795 8772 8.445493 CAGGTACGAAATTTAGGATAAAACGTT 58.555 33.333 0.00 0.00 33.72 3.99
4796 8773 7.064966 CCAGGTACGAAATTTAGGATAAAACGT 59.935 37.037 3.27 0.00 35.71 3.99
4797 8774 7.404203 CCAGGTACGAAATTTAGGATAAAACG 58.596 38.462 3.27 0.00 0.00 3.60
4798 8775 7.680350 GCCCAGGTACGAAATTTAGGATAAAAC 60.680 40.741 3.27 0.00 0.00 2.43
4799 8776 6.319405 GCCCAGGTACGAAATTTAGGATAAAA 59.681 38.462 3.27 0.00 0.00 1.52
4800 8777 5.824097 GCCCAGGTACGAAATTTAGGATAAA 59.176 40.000 3.27 0.00 0.00 1.40
4801 8778 5.131475 AGCCCAGGTACGAAATTTAGGATAA 59.869 40.000 3.27 0.00 0.00 1.75
4802 8779 4.657039 AGCCCAGGTACGAAATTTAGGATA 59.343 41.667 3.27 0.00 0.00 2.59
4803 8780 3.458487 AGCCCAGGTACGAAATTTAGGAT 59.542 43.478 3.27 0.00 0.00 3.24
4804 8781 2.841881 AGCCCAGGTACGAAATTTAGGA 59.158 45.455 3.27 0.00 0.00 2.94
4805 8782 2.943033 CAGCCCAGGTACGAAATTTAGG 59.057 50.000 3.27 0.00 0.00 2.69
4806 8783 2.354821 GCAGCCCAGGTACGAAATTTAG 59.645 50.000 0.00 0.00 0.00 1.85
4807 8784 2.361789 GCAGCCCAGGTACGAAATTTA 58.638 47.619 0.00 0.00 0.00 1.40
4808 8785 1.173913 GCAGCCCAGGTACGAAATTT 58.826 50.000 0.00 0.00 0.00 1.82
4809 8786 1.024579 CGCAGCCCAGGTACGAAATT 61.025 55.000 0.00 0.00 0.00 1.82
4810 8787 1.449601 CGCAGCCCAGGTACGAAAT 60.450 57.895 0.00 0.00 0.00 2.17
4811 8788 2.047655 CGCAGCCCAGGTACGAAA 60.048 61.111 0.00 0.00 0.00 3.46
4842 8819 2.901051 AAATAGGTCGGCTGGCGTCG 62.901 60.000 23.07 1.32 40.22 5.12
4843 8820 1.153429 AAATAGGTCGGCTGGCGTC 60.153 57.895 23.07 17.42 0.00 5.19
4844 8821 1.449601 CAAATAGGTCGGCTGGCGT 60.450 57.895 23.07 6.98 0.00 5.68
4845 8822 2.823829 GCAAATAGGTCGGCTGGCG 61.824 63.158 18.26 18.26 0.00 5.69
4846 8823 2.481471 GGCAAATAGGTCGGCTGGC 61.481 63.158 0.00 0.00 0.00 4.85
4847 8824 2.180204 CGGCAAATAGGTCGGCTGG 61.180 63.158 0.00 0.00 30.96 4.85
4848 8825 2.823829 GCGGCAAATAGGTCGGCTG 61.824 63.158 0.00 0.00 36.17 4.85
4849 8826 2.513897 GCGGCAAATAGGTCGGCT 60.514 61.111 0.00 0.00 36.17 5.52
4850 8827 2.822255 TGCGGCAAATAGGTCGGC 60.822 61.111 0.00 0.00 36.17 5.54
4851 8828 1.705337 CTGTGCGGCAAATAGGTCGG 61.705 60.000 3.23 0.00 36.17 4.79
4852 8829 1.715585 CTGTGCGGCAAATAGGTCG 59.284 57.895 3.23 0.00 39.28 4.79
4853 8830 1.429423 GCTGTGCGGCAAATAGGTC 59.571 57.895 3.23 0.00 0.00 3.85
4854 8831 3.590824 GCTGTGCGGCAAATAGGT 58.409 55.556 3.23 0.00 0.00 3.08
4865 8842 1.392168 TGACTATTTAACGCGCTGTGC 59.608 47.619 5.73 2.45 41.47 4.57
4866 8843 2.921121 TCTGACTATTTAACGCGCTGTG 59.079 45.455 5.73 0.00 0.00 3.66
4867 8844 3.179830 CTCTGACTATTTAACGCGCTGT 58.820 45.455 5.73 1.79 0.00 4.40
4868 8845 2.034507 GCTCTGACTATTTAACGCGCTG 60.035 50.000 5.73 1.02 0.00 5.18
4869 8846 2.159226 AGCTCTGACTATTTAACGCGCT 60.159 45.455 5.73 0.00 0.00 5.92
4870 8847 2.194271 AGCTCTGACTATTTAACGCGC 58.806 47.619 5.73 0.00 0.00 6.86
4871 8848 3.061797 CGAAGCTCTGACTATTTAACGCG 60.062 47.826 3.53 3.53 0.00 6.01
4872 8849 4.424476 CGAAGCTCTGACTATTTAACGC 57.576 45.455 0.00 0.00 0.00 4.84
4889 8866 1.647545 AATGGGCGACATGTGCGAAG 61.648 55.000 17.91 0.94 40.44 3.79
4890 8867 0.391793 TAATGGGCGACATGTGCGAA 60.392 50.000 17.91 8.28 40.44 4.70
4891 8868 1.087202 GTAATGGGCGACATGTGCGA 61.087 55.000 17.91 7.24 40.44 5.10
4892 8869 1.089481 AGTAATGGGCGACATGTGCG 61.089 55.000 1.15 8.23 40.44 5.34
4893 8870 1.094785 AAGTAATGGGCGACATGTGC 58.905 50.000 1.15 7.44 40.44 4.57
4894 8871 1.401552 CCAAGTAATGGGCGACATGTG 59.598 52.381 1.15 0.00 46.27 3.21
4895 8872 1.750193 CCAAGTAATGGGCGACATGT 58.250 50.000 0.00 0.00 46.27 3.21
4905 8882 1.453155 AACGAGCTGGCCAAGTAATG 58.547 50.000 7.01 0.00 0.00 1.90
4906 8883 2.200373 AAACGAGCTGGCCAAGTAAT 57.800 45.000 7.01 0.00 0.00 1.89
4907 8884 1.877443 GAAAACGAGCTGGCCAAGTAA 59.123 47.619 7.01 0.00 0.00 2.24
4908 8885 1.519408 GAAAACGAGCTGGCCAAGTA 58.481 50.000 7.01 0.00 0.00 2.24
4909 8886 1.507141 CGAAAACGAGCTGGCCAAGT 61.507 55.000 7.01 1.47 0.00 3.16
4910 8887 1.207593 CGAAAACGAGCTGGCCAAG 59.792 57.895 7.01 1.85 0.00 3.61
4911 8888 1.098712 AACGAAAACGAGCTGGCCAA 61.099 50.000 7.01 0.00 0.00 4.52
4912 8889 1.098712 AAACGAAAACGAGCTGGCCA 61.099 50.000 4.71 4.71 0.00 5.36
4913 8890 0.385598 GAAACGAAAACGAGCTGGCC 60.386 55.000 0.00 0.00 0.00 5.36
4914 8891 0.306533 TGAAACGAAAACGAGCTGGC 59.693 50.000 0.00 0.00 0.00 4.85
4915 8892 2.969443 ATGAAACGAAAACGAGCTGG 57.031 45.000 0.00 0.00 0.00 4.85
4916 8893 3.226347 GGAATGAAACGAAAACGAGCTG 58.774 45.455 0.00 0.00 0.00 4.24
4917 8894 2.875933 TGGAATGAAACGAAAACGAGCT 59.124 40.909 0.00 0.00 0.00 4.09
4918 8895 3.262135 TGGAATGAAACGAAAACGAGC 57.738 42.857 0.00 0.00 0.00 5.03
4919 8896 7.426456 CAGAATATGGAATGAAACGAAAACGAG 59.574 37.037 0.00 0.00 0.00 4.18
4920 8897 7.094975 ACAGAATATGGAATGAAACGAAAACGA 60.095 33.333 0.00 0.00 0.00 3.85
4921 8898 7.021196 ACAGAATATGGAATGAAACGAAAACG 58.979 34.615 0.00 0.00 0.00 3.60
4922 8899 8.742554 AACAGAATATGGAATGAAACGAAAAC 57.257 30.769 0.00 0.00 0.00 2.43
4923 8900 9.757227 AAAACAGAATATGGAATGAAACGAAAA 57.243 25.926 0.00 0.00 0.00 2.29
4924 8901 9.757227 AAAAACAGAATATGGAATGAAACGAAA 57.243 25.926 0.00 0.00 0.00 3.46
4947 8924 8.502105 AAGAAGAAGAGAAAGGAACGTAAAAA 57.498 30.769 0.00 0.00 0.00 1.94
4948 8925 8.502105 AAAGAAGAAGAGAAAGGAACGTAAAA 57.498 30.769 0.00 0.00 0.00 1.52
4949 8926 7.226128 GGAAAGAAGAAGAGAAAGGAACGTAAA 59.774 37.037 0.00 0.00 0.00 2.01
4950 8927 6.704937 GGAAAGAAGAAGAGAAAGGAACGTAA 59.295 38.462 0.00 0.00 0.00 3.18
4951 8928 6.041751 AGGAAAGAAGAAGAGAAAGGAACGTA 59.958 38.462 0.00 0.00 0.00 3.57
4952 8929 5.057819 GGAAAGAAGAAGAGAAAGGAACGT 58.942 41.667 0.00 0.00 0.00 3.99
4953 8930 5.301555 AGGAAAGAAGAAGAGAAAGGAACG 58.698 41.667 0.00 0.00 0.00 3.95
4954 8931 8.856153 AATAGGAAAGAAGAAGAGAAAGGAAC 57.144 34.615 0.00 0.00 0.00 3.62
4955 8932 9.508642 GAAATAGGAAAGAAGAAGAGAAAGGAA 57.491 33.333 0.00 0.00 0.00 3.36
4956 8933 8.885346 AGAAATAGGAAAGAAGAAGAGAAAGGA 58.115 33.333 0.00 0.00 0.00 3.36
4957 8934 9.513906 AAGAAATAGGAAAGAAGAAGAGAAAGG 57.486 33.333 0.00 0.00 0.00 3.11
4963 8940 9.067986 GGTCAAAAGAAATAGGAAAGAAGAAGA 57.932 33.333 0.00 0.00 0.00 2.87
4964 8941 8.300286 GGGTCAAAAGAAATAGGAAAGAAGAAG 58.700 37.037 0.00 0.00 0.00 2.85
4965 8942 8.004801 AGGGTCAAAAGAAATAGGAAAGAAGAA 58.995 33.333 0.00 0.00 0.00 2.52
4966 8943 7.526918 AGGGTCAAAAGAAATAGGAAAGAAGA 58.473 34.615 0.00 0.00 0.00 2.87
4967 8944 7.767250 AGGGTCAAAAGAAATAGGAAAGAAG 57.233 36.000 0.00 0.00 0.00 2.85
4968 8945 8.547481 AAAGGGTCAAAAGAAATAGGAAAGAA 57.453 30.769 0.00 0.00 0.00 2.52
4969 8946 8.547481 AAAAGGGTCAAAAGAAATAGGAAAGA 57.453 30.769 0.00 0.00 0.00 2.52
4970 8947 9.261180 GAAAAAGGGTCAAAAGAAATAGGAAAG 57.739 33.333 0.00 0.00 0.00 2.62
4971 8948 8.208224 GGAAAAAGGGTCAAAAGAAATAGGAAA 58.792 33.333 0.00 0.00 0.00 3.13
4972 8949 7.202056 GGGAAAAAGGGTCAAAAGAAATAGGAA 60.202 37.037 0.00 0.00 0.00 3.36
4973 8950 6.269077 GGGAAAAAGGGTCAAAAGAAATAGGA 59.731 38.462 0.00 0.00 0.00 2.94
4974 8951 6.270000 AGGGAAAAAGGGTCAAAAGAAATAGG 59.730 38.462 0.00 0.00 0.00 2.57
4975 8952 7.303182 AGGGAAAAAGGGTCAAAAGAAATAG 57.697 36.000 0.00 0.00 0.00 1.73
4976 8953 7.470841 CGAAGGGAAAAAGGGTCAAAAGAAATA 60.471 37.037 0.00 0.00 0.00 1.40
4977 8954 6.575244 AAGGGAAAAAGGGTCAAAAGAAAT 57.425 33.333 0.00 0.00 0.00 2.17
4978 8955 5.394773 CGAAGGGAAAAAGGGTCAAAAGAAA 60.395 40.000 0.00 0.00 0.00 2.52
4979 8956 4.098807 CGAAGGGAAAAAGGGTCAAAAGAA 59.901 41.667 0.00 0.00 0.00 2.52
4980 8957 3.634910 CGAAGGGAAAAAGGGTCAAAAGA 59.365 43.478 0.00 0.00 0.00 2.52
4981 8958 3.634910 TCGAAGGGAAAAAGGGTCAAAAG 59.365 43.478 0.00 0.00 0.00 2.27
4982 8959 3.633418 TCGAAGGGAAAAAGGGTCAAAA 58.367 40.909 0.00 0.00 0.00 2.44
4983 8960 3.300239 TCGAAGGGAAAAAGGGTCAAA 57.700 42.857 0.00 0.00 0.00 2.69
4984 8961 3.219281 CTTCGAAGGGAAAAAGGGTCAA 58.781 45.455 17.70 0.00 33.34 3.18
4985 8962 2.173996 ACTTCGAAGGGAAAAAGGGTCA 59.826 45.455 27.86 0.00 33.34 4.02
4986 8963 2.860009 ACTTCGAAGGGAAAAAGGGTC 58.140 47.619 27.86 0.00 33.34 4.46
4987 8964 3.308035 AACTTCGAAGGGAAAAAGGGT 57.692 42.857 27.86 1.81 33.34 4.34
4988 8965 4.825634 ACTAAACTTCGAAGGGAAAAAGGG 59.174 41.667 27.86 10.65 33.34 3.95
4989 8966 6.387041 AACTAAACTTCGAAGGGAAAAAGG 57.613 37.500 27.86 11.93 33.34 3.11
4990 8967 9.961265 AATAAACTAAACTTCGAAGGGAAAAAG 57.039 29.630 27.86 17.15 33.34 2.27
5034 9011 9.603921 TGAAATTCTGAGCTTTTTCTTTTGAAT 57.396 25.926 0.00 0.00 38.37 2.57
5035 9012 9.603921 ATGAAATTCTGAGCTTTTTCTTTTGAA 57.396 25.926 0.00 0.00 36.52 2.69
5041 9018 9.565213 CGAAATATGAAATTCTGAGCTTTTTCT 57.435 29.630 0.00 0.00 0.00 2.52
5042 9019 9.346725 ACGAAATATGAAATTCTGAGCTTTTTC 57.653 29.630 0.00 0.00 0.00 2.29
5043 9020 9.696917 AACGAAATATGAAATTCTGAGCTTTTT 57.303 25.926 0.00 0.00 0.00 1.94
5044 9021 9.346725 GAACGAAATATGAAATTCTGAGCTTTT 57.653 29.630 0.00 0.00 0.00 2.27
5045 9022 8.514594 TGAACGAAATATGAAATTCTGAGCTTT 58.485 29.630 0.00 0.00 0.00 3.51
5046 9023 8.044060 TGAACGAAATATGAAATTCTGAGCTT 57.956 30.769 0.00 0.00 0.00 3.74
5047 9024 7.615582 TGAACGAAATATGAAATTCTGAGCT 57.384 32.000 0.00 0.00 0.00 4.09
5048 9025 8.673626 TTTGAACGAAATATGAAATTCTGAGC 57.326 30.769 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.