Multiple sequence alignment - TraesCS4B01G143200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G143200 chr4B 100.000 2696 0 0 1 2696 189153983 189151288 0.000000e+00 4979.0
1 TraesCS4B01G143200 chr4A 96.559 1918 55 5 785 2696 444862828 444864740 0.000000e+00 3166.0
2 TraesCS4B01G143200 chr4A 94.323 229 10 3 165 392 444862160 444862386 5.520000e-92 348.0
3 TraesCS4B01G143200 chr4A 87.736 106 4 1 541 646 444862751 444862847 6.100000e-22 115.0
4 TraesCS4B01G143200 chr4D 96.759 1882 43 5 826 2696 125232383 125230509 0.000000e+00 3121.0
5 TraesCS4B01G143200 chr4D 100.000 151 0 0 645 795 498575302 498575152 2.040000e-71 279.0
6 TraesCS4B01G143200 chr4D 92.121 165 13 0 1 165 28555395 28555559 1.610000e-57 233.0
7 TraesCS4B01G143200 chr4D 91.566 166 14 0 1 166 94372890 94373055 2.090000e-56 230.0
8 TraesCS4B01G143200 chr4D 84.082 245 16 11 280 501 125233154 125232910 5.850000e-52 215.0
9 TraesCS4B01G143200 chr4D 94.286 105 6 0 543 647 125232776 125232672 7.720000e-36 161.0
10 TraesCS4B01G143200 chr4D 100.000 33 0 0 429 461 37050601 37050633 8.060000e-06 62.1
11 TraesCS4B01G143200 chr6A 100.000 151 0 0 646 796 600302051 600302201 2.040000e-71 279.0
12 TraesCS4B01G143200 chr7A 100.000 150 0 0 646 795 219852833 219852982 7.350000e-71 278.0
13 TraesCS4B01G143200 chr7A 99.338 151 1 0 646 796 226759044 226759194 9.510000e-70 274.0
14 TraesCS4B01G143200 chr6B 100.000 150 0 0 646 795 164032138 164031989 7.350000e-71 278.0
15 TraesCS4B01G143200 chr3B 100.000 150 0 0 646 795 817065191 817065042 7.350000e-71 278.0
16 TraesCS4B01G143200 chr3B 98.667 150 2 0 646 795 100968308 100968457 1.590000e-67 267.0
17 TraesCS4B01G143200 chr3B 92.727 165 12 0 1 165 716298587 716298751 3.470000e-59 239.0
18 TraesCS4B01G143200 chr3B 92.683 164 11 1 1 164 774459982 774459820 4.490000e-58 235.0
19 TraesCS4B01G143200 chr1A 99.342 152 1 0 646 797 488623626 488623777 2.640000e-70 276.0
20 TraesCS4B01G143200 chr1A 87.302 63 8 0 476 538 460998292 460998354 3.720000e-09 73.1
21 TraesCS4B01G143200 chr1A 100.000 32 0 0 426 457 60526637 60526606 2.900000e-05 60.2
22 TraesCS4B01G143200 chr2A 99.333 150 1 0 646 795 118674173 118674024 3.420000e-69 272.0
23 TraesCS4B01G143200 chr5D 93.333 165 9 1 2 164 44605998 44606162 2.680000e-60 243.0
24 TraesCS4B01G143200 chr5D 74.074 297 58 14 1397 1679 103654432 103654141 1.320000e-18 104.0
25 TraesCS4B01G143200 chr7D 92.727 165 12 0 1 165 611702301 611702465 3.470000e-59 239.0
26 TraesCS4B01G143200 chr7D 92.073 164 13 0 1 164 126890491 126890328 5.800000e-57 231.0
27 TraesCS4B01G143200 chr7D 92.073 164 13 0 1 164 163012789 163012626 5.800000e-57 231.0
28 TraesCS4B01G143200 chr7D 100.000 31 0 0 429 459 127219453 127219423 1.040000e-04 58.4
29 TraesCS4B01G143200 chr2D 91.228 171 14 1 1 170 644213307 644213137 5.800000e-57 231.0
30 TraesCS4B01G143200 chr6D 74.237 295 61 11 1397 1679 276903075 276903366 2.840000e-20 110.0
31 TraesCS4B01G143200 chr5B 73.559 295 63 11 1397 1679 112586979 112586688 6.140000e-17 99.0
32 TraesCS4B01G143200 chr1B 100.000 32 0 0 426 457 99640879 99640848 2.900000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G143200 chr4B 189151288 189153983 2695 True 4979.000000 4979 100.000000 1 2696 1 chr4B.!!$R1 2695
1 TraesCS4B01G143200 chr4A 444862160 444864740 2580 False 1209.666667 3166 92.872667 165 2696 3 chr4A.!!$F1 2531
2 TraesCS4B01G143200 chr4D 125230509 125233154 2645 True 1165.666667 3121 91.709000 280 2696 3 chr4D.!!$R2 2416

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
685 907 0.031178 GCTGCATAGCCGATTTTGGG 59.969 55.0 0.0 0.0 44.33 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2084 2587 1.144503 GAGGTGGAATGAGCCATGGAT 59.855 52.381 18.4 10.08 40.68 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.303189 ACATCCTGGAGTGCCTCG 58.697 61.111 1.52 0.00 34.31 4.63
18 19 1.610673 ACATCCTGGAGTGCCTCGT 60.611 57.895 1.52 0.00 34.31 4.18
19 20 1.142748 CATCCTGGAGTGCCTCGTC 59.857 63.158 1.52 0.00 34.31 4.20
20 21 2.418910 ATCCTGGAGTGCCTCGTCG 61.419 63.158 1.52 0.00 34.31 5.12
21 22 4.135153 CCTGGAGTGCCTCGTCGG 62.135 72.222 0.00 0.00 34.31 4.79
30 31 2.814604 CCTCGTCGGCATCATGGA 59.185 61.111 0.00 0.00 0.00 3.41
31 32 1.592669 CCTCGTCGGCATCATGGAC 60.593 63.158 0.00 0.00 0.00 4.02
33 34 2.202743 CGTCGGCATCATGGACGT 60.203 61.111 11.76 0.00 46.07 4.34
34 35 1.065109 CGTCGGCATCATGGACGTA 59.935 57.895 11.76 0.00 46.07 3.57
35 36 0.318699 CGTCGGCATCATGGACGTAT 60.319 55.000 11.76 0.00 46.07 3.06
36 37 1.068816 CGTCGGCATCATGGACGTATA 60.069 52.381 11.76 0.00 46.07 1.47
37 38 2.606065 CGTCGGCATCATGGACGTATAA 60.606 50.000 11.76 0.00 46.07 0.98
38 39 3.386486 GTCGGCATCATGGACGTATAAA 58.614 45.455 0.00 0.00 41.04 1.40
39 40 3.805422 GTCGGCATCATGGACGTATAAAA 59.195 43.478 0.00 0.00 41.04 1.52
40 41 4.271533 GTCGGCATCATGGACGTATAAAAA 59.728 41.667 0.00 0.00 41.04 1.94
41 42 4.271533 TCGGCATCATGGACGTATAAAAAC 59.728 41.667 0.00 0.00 41.04 2.43
42 43 4.034626 CGGCATCATGGACGTATAAAAACA 59.965 41.667 0.00 0.00 33.69 2.83
43 44 5.447954 CGGCATCATGGACGTATAAAAACAA 60.448 40.000 0.00 0.00 33.69 2.83
44 45 5.971202 GGCATCATGGACGTATAAAAACAAG 59.029 40.000 0.00 0.00 0.00 3.16
45 46 6.183360 GGCATCATGGACGTATAAAAACAAGA 60.183 38.462 0.00 0.00 0.00 3.02
46 47 7.417612 GCATCATGGACGTATAAAAACAAGAT 58.582 34.615 0.00 0.00 0.00 2.40
47 48 7.915397 GCATCATGGACGTATAAAAACAAGATT 59.085 33.333 0.00 0.00 0.00 2.40
48 49 9.787532 CATCATGGACGTATAAAAACAAGATTT 57.212 29.630 0.00 0.00 0.00 2.17
49 50 9.787532 ATCATGGACGTATAAAAACAAGATTTG 57.212 29.630 0.00 0.00 0.00 2.32
50 51 9.004717 TCATGGACGTATAAAAACAAGATTTGA 57.995 29.630 0.00 0.00 0.00 2.69
51 52 9.619316 CATGGACGTATAAAAACAAGATTTGAA 57.381 29.630 0.00 0.00 0.00 2.69
52 53 9.620660 ATGGACGTATAAAAACAAGATTTGAAC 57.379 29.630 0.00 0.00 0.00 3.18
53 54 8.842280 TGGACGTATAAAAACAAGATTTGAACT 58.158 29.630 0.00 0.00 0.00 3.01
54 55 9.113876 GGACGTATAAAAACAAGATTTGAACTG 57.886 33.333 0.00 0.00 0.00 3.16
55 56 9.659830 GACGTATAAAAACAAGATTTGAACTGT 57.340 29.630 0.00 0.00 0.00 3.55
62 63 9.979578 AAAAACAAGATTTGAACTGTATATGCA 57.020 25.926 0.00 0.00 0.00 3.96
63 64 8.970691 AAACAAGATTTGAACTGTATATGCAC 57.029 30.769 0.00 0.00 0.00 4.57
64 65 6.775088 ACAAGATTTGAACTGTATATGCACG 58.225 36.000 0.00 0.00 0.00 5.34
65 66 6.371548 ACAAGATTTGAACTGTATATGCACGT 59.628 34.615 0.00 0.00 0.00 4.49
66 67 6.589830 AGATTTGAACTGTATATGCACGTC 57.410 37.500 0.00 0.00 0.00 4.34
67 68 5.523916 AGATTTGAACTGTATATGCACGTCC 59.476 40.000 0.00 0.00 0.00 4.79
68 69 3.878160 TGAACTGTATATGCACGTCCA 57.122 42.857 0.00 0.00 0.00 4.02
69 70 4.400529 TGAACTGTATATGCACGTCCAT 57.599 40.909 0.00 0.00 0.00 3.41
70 71 4.119136 TGAACTGTATATGCACGTCCATG 58.881 43.478 1.14 0.00 0.00 3.66
71 72 2.483876 ACTGTATATGCACGTCCATGC 58.516 47.619 1.14 0.00 46.32 4.06
72 73 1.800586 CTGTATATGCACGTCCATGCC 59.199 52.381 1.14 0.00 45.50 4.40
73 74 1.139853 TGTATATGCACGTCCATGCCA 59.860 47.619 1.14 0.00 45.50 4.92
74 75 2.217750 GTATATGCACGTCCATGCCAA 58.782 47.619 1.14 0.00 45.50 4.52
75 76 1.311859 ATATGCACGTCCATGCCAAG 58.688 50.000 1.14 0.00 45.50 3.61
76 77 0.035534 TATGCACGTCCATGCCAAGT 60.036 50.000 1.14 0.00 45.50 3.16
77 78 0.895100 ATGCACGTCCATGCCAAGTT 60.895 50.000 0.00 0.00 45.50 2.66
78 79 0.250510 TGCACGTCCATGCCAAGTTA 60.251 50.000 0.00 0.00 45.50 2.24
79 80 0.168128 GCACGTCCATGCCAAGTTAC 59.832 55.000 0.00 0.00 39.86 2.50
80 81 0.442310 CACGTCCATGCCAAGTTACG 59.558 55.000 0.00 0.00 36.48 3.18
81 82 0.672401 ACGTCCATGCCAAGTTACGG 60.672 55.000 0.00 0.00 34.81 4.02
82 83 0.390603 CGTCCATGCCAAGTTACGGA 60.391 55.000 0.00 0.00 0.00 4.69
83 84 1.816074 GTCCATGCCAAGTTACGGAA 58.184 50.000 0.00 0.00 0.00 4.30
84 85 2.365582 GTCCATGCCAAGTTACGGAAT 58.634 47.619 0.00 0.00 0.00 3.01
85 86 2.354821 GTCCATGCCAAGTTACGGAATC 59.645 50.000 0.00 0.00 0.00 2.52
86 87 2.026729 TCCATGCCAAGTTACGGAATCA 60.027 45.455 0.00 0.00 0.00 2.57
87 88 2.355756 CCATGCCAAGTTACGGAATCAG 59.644 50.000 0.00 0.00 0.00 2.90
88 89 2.851263 TGCCAAGTTACGGAATCAGT 57.149 45.000 0.00 0.00 0.00 3.41
89 90 3.134574 TGCCAAGTTACGGAATCAGTT 57.865 42.857 0.00 0.00 0.00 3.16
90 91 3.071479 TGCCAAGTTACGGAATCAGTTC 58.929 45.455 0.00 0.00 0.00 3.01
91 92 3.071479 GCCAAGTTACGGAATCAGTTCA 58.929 45.455 0.00 0.00 36.01 3.18
92 93 3.500680 GCCAAGTTACGGAATCAGTTCAA 59.499 43.478 0.00 0.00 36.01 2.69
93 94 4.156008 GCCAAGTTACGGAATCAGTTCAAT 59.844 41.667 0.00 0.00 36.01 2.57
94 95 5.631026 CCAAGTTACGGAATCAGTTCAATG 58.369 41.667 0.00 0.00 36.01 2.82
95 96 5.181245 CCAAGTTACGGAATCAGTTCAATGT 59.819 40.000 0.00 0.00 36.01 2.71
96 97 6.370442 CCAAGTTACGGAATCAGTTCAATGTA 59.630 38.462 0.00 0.00 36.01 2.29
97 98 7.065803 CCAAGTTACGGAATCAGTTCAATGTAT 59.934 37.037 0.00 0.00 36.01 2.29
98 99 8.450964 CAAGTTACGGAATCAGTTCAATGTATT 58.549 33.333 0.00 0.00 36.01 1.89
99 100 8.561738 AGTTACGGAATCAGTTCAATGTATTT 57.438 30.769 0.00 0.00 36.01 1.40
100 101 9.010029 AGTTACGGAATCAGTTCAATGTATTTT 57.990 29.630 0.00 0.00 36.01 1.82
103 104 8.330466 ACGGAATCAGTTCAATGTATTTTACA 57.670 30.769 0.00 0.00 38.37 2.41
104 105 8.788806 ACGGAATCAGTTCAATGTATTTTACAA 58.211 29.630 0.00 0.00 37.90 2.41
105 106 9.277565 CGGAATCAGTTCAATGTATTTTACAAG 57.722 33.333 0.00 0.00 37.90 3.16
111 112 9.398170 CAGTTCAATGTATTTTACAAGTTCAGG 57.602 33.333 0.00 0.00 42.76 3.86
112 113 8.082242 AGTTCAATGTATTTTACAAGTTCAGGC 58.918 33.333 0.00 0.00 42.76 4.85
113 114 7.517614 TCAATGTATTTTACAAGTTCAGGCA 57.482 32.000 0.00 0.00 42.76 4.75
114 115 7.367285 TCAATGTATTTTACAAGTTCAGGCAC 58.633 34.615 0.00 0.00 42.76 5.01
115 116 7.230510 TCAATGTATTTTACAAGTTCAGGCACT 59.769 33.333 0.00 0.00 42.76 4.40
116 117 8.511321 CAATGTATTTTACAAGTTCAGGCACTA 58.489 33.333 0.00 0.00 42.76 2.74
117 118 8.630054 ATGTATTTTACAAGTTCAGGCACTAA 57.370 30.769 0.00 0.00 42.76 2.24
118 119 8.453238 TGTATTTTACAAGTTCAGGCACTAAA 57.547 30.769 0.00 0.00 33.36 1.85
119 120 8.564574 TGTATTTTACAAGTTCAGGCACTAAAG 58.435 33.333 0.00 0.00 33.36 1.85
120 121 7.582667 ATTTTACAAGTTCAGGCACTAAAGT 57.417 32.000 0.00 0.00 36.02 2.66
133 134 3.940303 CACTAAAGTGCATATTCGTGGC 58.060 45.455 9.74 0.00 39.39 5.01
134 135 3.373748 CACTAAAGTGCATATTCGTGGCA 59.626 43.478 9.74 0.00 39.39 4.92
135 136 4.006989 ACTAAAGTGCATATTCGTGGCAA 58.993 39.130 0.00 0.00 39.57 4.52
136 137 3.492421 AAAGTGCATATTCGTGGCAAG 57.508 42.857 0.00 0.00 39.57 4.01
137 138 2.113860 AGTGCATATTCGTGGCAAGT 57.886 45.000 0.00 0.00 39.57 3.16
138 139 2.436417 AGTGCATATTCGTGGCAAGTT 58.564 42.857 0.00 0.00 39.57 2.66
139 140 2.420022 AGTGCATATTCGTGGCAAGTTC 59.580 45.455 0.00 0.00 39.57 3.01
140 141 2.161410 GTGCATATTCGTGGCAAGTTCA 59.839 45.455 0.00 0.00 39.57 3.18
141 142 2.816672 TGCATATTCGTGGCAAGTTCAA 59.183 40.909 0.00 0.00 34.05 2.69
142 143 3.119884 TGCATATTCGTGGCAAGTTCAAG 60.120 43.478 0.00 0.00 34.05 3.02
143 144 3.429085 CATATTCGTGGCAAGTTCAAGC 58.571 45.455 0.00 0.00 0.00 4.01
144 145 1.317613 ATTCGTGGCAAGTTCAAGCA 58.682 45.000 0.00 0.00 0.00 3.91
145 146 0.380378 TTCGTGGCAAGTTCAAGCAC 59.620 50.000 0.00 0.00 0.00 4.40
146 147 1.369209 CGTGGCAAGTTCAAGCACG 60.369 57.895 0.00 0.00 0.00 5.34
147 148 1.771073 CGTGGCAAGTTCAAGCACGA 61.771 55.000 0.00 0.00 37.41 4.35
148 149 0.040958 GTGGCAAGTTCAAGCACGAG 60.041 55.000 0.00 0.00 0.00 4.18
149 150 0.463654 TGGCAAGTTCAAGCACGAGT 60.464 50.000 0.00 0.00 0.00 4.18
150 151 0.040958 GGCAAGTTCAAGCACGAGTG 60.041 55.000 0.00 0.00 0.00 3.51
151 152 0.937304 GCAAGTTCAAGCACGAGTGA 59.063 50.000 7.50 0.00 0.00 3.41
152 153 1.532868 GCAAGTTCAAGCACGAGTGAT 59.467 47.619 7.50 0.00 0.00 3.06
153 154 2.663879 GCAAGTTCAAGCACGAGTGATG 60.664 50.000 7.50 5.40 0.00 3.07
154 155 2.533266 AGTTCAAGCACGAGTGATGT 57.467 45.000 7.50 0.00 0.00 3.06
155 156 3.660501 AGTTCAAGCACGAGTGATGTA 57.339 42.857 7.50 0.00 0.00 2.29
156 157 4.193826 AGTTCAAGCACGAGTGATGTAT 57.806 40.909 7.50 0.00 0.00 2.29
157 158 4.569943 AGTTCAAGCACGAGTGATGTATT 58.430 39.130 7.50 0.00 0.00 1.89
158 159 4.997395 AGTTCAAGCACGAGTGATGTATTT 59.003 37.500 7.50 0.00 0.00 1.40
159 160 6.163476 AGTTCAAGCACGAGTGATGTATTTA 58.837 36.000 7.50 0.00 0.00 1.40
160 161 6.090898 AGTTCAAGCACGAGTGATGTATTTAC 59.909 38.462 7.50 0.00 0.00 2.01
161 162 4.868171 TCAAGCACGAGTGATGTATTTACC 59.132 41.667 7.50 0.00 0.00 2.85
162 163 4.737855 AGCACGAGTGATGTATTTACCT 57.262 40.909 7.50 0.00 0.00 3.08
163 164 4.683832 AGCACGAGTGATGTATTTACCTC 58.316 43.478 7.50 0.00 0.00 3.85
172 173 9.331282 GAGTGATGTATTTACCTCTAGCATTTT 57.669 33.333 0.00 0.00 0.00 1.82
214 215 3.589988 AGTCCACATCATTTGACGTCTC 58.410 45.455 17.92 0.00 33.04 3.36
222 223 4.123497 TCATTTGACGTCTCCATACCTG 57.877 45.455 17.92 3.54 0.00 4.00
229 230 5.416083 TGACGTCTCCATACCTGTATTTTG 58.584 41.667 17.92 0.00 0.00 2.44
295 297 4.489249 CGTAGGTGTTAGCCCACG 57.511 61.111 0.00 0.00 36.16 4.94
334 336 2.449464 TGCTTCTTGTATTGCTGCCAT 58.551 42.857 0.00 0.00 0.00 4.40
373 378 5.029650 TCCGTTTCGTTGATGATTTCTTG 57.970 39.130 0.00 0.00 0.00 3.02
392 397 2.088423 TGTCATTGGGGTTATGCGAAC 58.912 47.619 0.00 0.00 0.00 3.95
405 442 5.451242 GGTTATGCGAACATCTCTCTCTCTT 60.451 44.000 3.96 0.00 37.74 2.85
406 443 3.773860 TGCGAACATCTCTCTCTCTTC 57.226 47.619 0.00 0.00 0.00 2.87
408 445 2.425312 GCGAACATCTCTCTCTCTTCCA 59.575 50.000 0.00 0.00 0.00 3.53
409 446 3.119316 GCGAACATCTCTCTCTCTTCCAA 60.119 47.826 0.00 0.00 0.00 3.53
410 447 4.619394 GCGAACATCTCTCTCTCTTCCAAA 60.619 45.833 0.00 0.00 0.00 3.28
412 449 6.681616 GCGAACATCTCTCTCTCTTCCAAATA 60.682 42.308 0.00 0.00 0.00 1.40
428 484 5.964758 TCCAAATACATTTCAGGTTCATGC 58.035 37.500 0.00 0.00 0.00 4.06
454 510 5.163012 ACTCCCTCCGTCCACTATTATAAGA 60.163 44.000 0.00 0.00 0.00 2.10
461 520 9.326413 CTCCGTCCACTATTATAAGATGTTTTT 57.674 33.333 0.00 0.00 0.00 1.94
490 549 5.533154 TGAACACCGGAATGAGTAAACAAAT 59.467 36.000 9.46 0.00 0.00 2.32
494 553 6.657541 ACACCGGAATGAGTAAACAAATACAT 59.342 34.615 9.46 0.00 0.00 2.29
635 857 8.186163 TGATCAAGAGCATAAGCAATTAGTTTG 58.814 33.333 0.00 0.00 45.49 2.93
636 858 7.686438 TCAAGAGCATAAGCAATTAGTTTGA 57.314 32.000 0.00 0.00 45.49 2.69
637 859 8.284945 TCAAGAGCATAAGCAATTAGTTTGAT 57.715 30.769 0.00 0.00 45.49 2.57
638 860 8.742777 TCAAGAGCATAAGCAATTAGTTTGATT 58.257 29.630 0.00 0.00 45.45 2.57
639 861 9.362539 CAAGAGCATAAGCAATTAGTTTGATTT 57.637 29.630 0.00 0.00 40.97 2.17
640 862 9.578439 AAGAGCATAAGCAATTAGTTTGATTTC 57.422 29.630 0.00 0.00 40.97 2.17
641 863 8.193438 AGAGCATAAGCAATTAGTTTGATTTCC 58.807 33.333 0.00 0.00 40.97 3.13
642 864 7.839907 AGCATAAGCAATTAGTTTGATTTCCA 58.160 30.769 0.00 0.00 40.97 3.53
643 865 7.761249 AGCATAAGCAATTAGTTTGATTTCCAC 59.239 33.333 0.00 0.00 40.97 4.02
644 866 7.761249 GCATAAGCAATTAGTTTGATTTCCACT 59.239 33.333 0.00 0.00 40.97 4.00
645 867 9.079833 CATAAGCAATTAGTTTGATTTCCACTG 57.920 33.333 0.00 0.00 40.97 3.66
646 868 6.899393 AGCAATTAGTTTGATTTCCACTGA 57.101 33.333 0.00 0.00 37.53 3.41
647 869 6.917533 AGCAATTAGTTTGATTTCCACTGAG 58.082 36.000 0.00 0.00 37.53 3.35
648 870 6.491403 AGCAATTAGTTTGATTTCCACTGAGT 59.509 34.615 0.00 0.00 37.53 3.41
649 871 6.583806 GCAATTAGTTTGATTTCCACTGAGTG 59.416 38.462 5.42 5.42 37.53 3.51
650 872 5.689383 TTAGTTTGATTTCCACTGAGTGC 57.311 39.130 7.16 0.00 31.34 4.40
651 873 3.825328 AGTTTGATTTCCACTGAGTGCT 58.175 40.909 7.16 0.00 31.34 4.40
652 874 3.567164 AGTTTGATTTCCACTGAGTGCTG 59.433 43.478 7.16 0.00 31.34 4.41
653 875 1.527034 TGATTTCCACTGAGTGCTGC 58.473 50.000 7.16 0.00 31.34 5.25
654 876 1.072806 TGATTTCCACTGAGTGCTGCT 59.927 47.619 7.16 0.00 31.34 4.24
655 877 2.302733 TGATTTCCACTGAGTGCTGCTA 59.697 45.455 7.16 0.00 31.34 3.49
656 878 2.169832 TTTCCACTGAGTGCTGCTAC 57.830 50.000 7.16 0.00 31.34 3.58
657 879 1.047801 TTCCACTGAGTGCTGCTACA 58.952 50.000 7.16 0.00 31.34 2.74
658 880 0.318441 TCCACTGAGTGCTGCTACAC 59.682 55.000 7.16 1.90 41.02 2.90
659 881 0.033920 CCACTGAGTGCTGCTACACA 59.966 55.000 7.16 2.08 43.23 3.72
668 890 3.351450 TGCTACACAGACGACGCT 58.649 55.556 0.00 0.00 0.00 5.07
669 891 1.081442 TGCTACACAGACGACGCTG 60.081 57.895 14.87 14.87 41.63 5.18
670 892 2.437343 GCTACACAGACGACGCTGC 61.437 63.158 15.95 0.00 39.51 5.25
671 893 1.081442 CTACACAGACGACGCTGCA 60.081 57.895 15.95 0.00 39.51 4.41
672 894 0.456824 CTACACAGACGACGCTGCAT 60.457 55.000 15.95 9.09 39.51 3.96
673 895 0.806241 TACACAGACGACGCTGCATA 59.194 50.000 15.95 8.34 39.51 3.14
674 896 0.456824 ACACAGACGACGCTGCATAG 60.457 55.000 15.95 8.64 39.51 2.23
675 897 1.517257 ACAGACGACGCTGCATAGC 60.517 57.895 15.95 0.00 46.62 2.97
684 906 3.557207 GCTGCATAGCCGATTTTGG 57.443 52.632 0.00 0.00 44.33 3.28
685 907 0.031178 GCTGCATAGCCGATTTTGGG 59.969 55.000 0.00 0.00 44.33 4.12
686 908 1.679139 CTGCATAGCCGATTTTGGGA 58.321 50.000 0.00 0.00 0.00 4.37
687 909 1.334869 CTGCATAGCCGATTTTGGGAC 59.665 52.381 0.00 0.00 0.00 4.46
688 910 0.307760 GCATAGCCGATTTTGGGACG 59.692 55.000 0.00 0.00 0.00 4.79
689 911 1.948104 CATAGCCGATTTTGGGACGA 58.052 50.000 0.00 0.00 0.00 4.20
690 912 1.597663 CATAGCCGATTTTGGGACGAC 59.402 52.381 0.00 0.00 0.00 4.34
691 913 0.609151 TAGCCGATTTTGGGACGACA 59.391 50.000 0.00 0.00 0.00 4.35
692 914 0.953960 AGCCGATTTTGGGACGACAC 60.954 55.000 0.00 0.00 0.00 3.67
693 915 0.953960 GCCGATTTTGGGACGACACT 60.954 55.000 0.00 0.00 0.00 3.55
694 916 0.796312 CCGATTTTGGGACGACACTG 59.204 55.000 0.00 0.00 0.00 3.66
695 917 1.508632 CGATTTTGGGACGACACTGT 58.491 50.000 0.00 0.00 0.00 3.55
696 918 1.459592 CGATTTTGGGACGACACTGTC 59.540 52.381 0.00 0.00 38.17 3.51
697 919 2.489971 GATTTTGGGACGACACTGTCA 58.510 47.619 9.84 0.00 40.72 3.58
698 920 2.404923 TTTTGGGACGACACTGTCAA 57.595 45.000 9.84 0.00 40.72 3.18
699 921 2.631160 TTTGGGACGACACTGTCAAT 57.369 45.000 9.84 0.00 40.72 2.57
700 922 2.163818 TTGGGACGACACTGTCAATC 57.836 50.000 9.84 6.03 40.72 2.67
701 923 1.044611 TGGGACGACACTGTCAATCA 58.955 50.000 9.84 0.00 40.72 2.57
703 925 1.272490 GGGACGACACTGTCAATCAGA 59.728 52.381 9.84 0.00 46.27 3.27
704 926 2.329379 GGACGACACTGTCAATCAGAC 58.671 52.381 9.84 0.00 46.27 3.51
714 936 2.646930 GTCAATCAGACCATCCATGCA 58.353 47.619 0.00 0.00 41.56 3.96
715 937 2.617308 GTCAATCAGACCATCCATGCAG 59.383 50.000 0.00 0.00 41.56 4.41
716 938 2.506644 TCAATCAGACCATCCATGCAGA 59.493 45.455 0.00 0.00 0.00 4.26
717 939 2.879026 CAATCAGACCATCCATGCAGAG 59.121 50.000 0.00 0.00 0.00 3.35
718 940 0.835276 TCAGACCATCCATGCAGAGG 59.165 55.000 1.59 1.59 0.00 3.69
719 941 0.835276 CAGACCATCCATGCAGAGGA 59.165 55.000 12.56 12.56 39.97 3.71
720 942 1.420514 CAGACCATCCATGCAGAGGAT 59.579 52.381 15.72 15.72 46.61 3.24
721 943 2.636403 CAGACCATCCATGCAGAGGATA 59.364 50.000 19.72 0.00 43.90 2.59
722 944 3.072038 CAGACCATCCATGCAGAGGATAA 59.928 47.826 19.72 0.00 43.90 1.75
723 945 3.718434 AGACCATCCATGCAGAGGATAAA 59.282 43.478 19.72 0.00 43.90 1.40
724 946 3.817647 GACCATCCATGCAGAGGATAAAC 59.182 47.826 19.72 11.66 43.90 2.01
725 947 3.461085 ACCATCCATGCAGAGGATAAACT 59.539 43.478 19.72 0.07 43.90 2.66
726 948 3.819337 CCATCCATGCAGAGGATAAACTG 59.181 47.826 19.72 10.96 43.90 3.16
727 949 4.458397 CATCCATGCAGAGGATAAACTGT 58.542 43.478 19.72 0.00 43.90 3.55
728 950 5.455183 CCATCCATGCAGAGGATAAACTGTA 60.455 44.000 19.72 0.00 43.90 2.74
729 951 5.282055 TCCATGCAGAGGATAAACTGTAG 57.718 43.478 6.58 0.00 36.62 2.74
730 952 3.812053 CCATGCAGAGGATAAACTGTAGC 59.188 47.826 1.80 0.00 36.62 3.58
731 953 4.445453 CATGCAGAGGATAAACTGTAGCA 58.555 43.478 0.00 0.00 36.62 3.49
732 954 3.861840 TGCAGAGGATAAACTGTAGCAC 58.138 45.455 0.00 0.00 36.62 4.40
733 955 3.260632 TGCAGAGGATAAACTGTAGCACA 59.739 43.478 0.00 0.00 36.62 4.57
734 956 4.253685 GCAGAGGATAAACTGTAGCACAA 58.746 43.478 0.00 0.00 36.62 3.33
735 957 4.093556 GCAGAGGATAAACTGTAGCACAAC 59.906 45.833 0.00 0.00 36.62 3.32
736 958 4.631813 CAGAGGATAAACTGTAGCACAACC 59.368 45.833 0.00 0.00 0.00 3.77
737 959 4.286032 AGAGGATAAACTGTAGCACAACCA 59.714 41.667 0.00 0.00 0.00 3.67
738 960 5.045578 AGAGGATAAACTGTAGCACAACCAT 60.046 40.000 0.00 0.00 0.00 3.55
739 961 5.570320 AGGATAAACTGTAGCACAACCATT 58.430 37.500 0.00 0.00 0.00 3.16
740 962 5.415701 AGGATAAACTGTAGCACAACCATTG 59.584 40.000 0.00 0.00 0.00 2.82
741 963 5.393027 GGATAAACTGTAGCACAACCATTGG 60.393 44.000 0.00 0.00 34.12 3.16
742 964 2.949177 ACTGTAGCACAACCATTGGA 57.051 45.000 10.37 0.00 34.12 3.53
743 965 3.439857 ACTGTAGCACAACCATTGGAT 57.560 42.857 10.37 0.00 34.12 3.41
744 966 3.084039 ACTGTAGCACAACCATTGGATG 58.916 45.455 10.37 10.80 34.12 3.51
745 967 3.084039 CTGTAGCACAACCATTGGATGT 58.916 45.455 12.47 12.47 39.28 3.06
746 968 4.260985 CTGTAGCACAACCATTGGATGTA 58.739 43.478 17.19 0.98 36.57 2.29
747 969 4.260985 TGTAGCACAACCATTGGATGTAG 58.739 43.478 17.19 12.76 36.57 2.74
748 970 3.439857 AGCACAACCATTGGATGTAGT 57.560 42.857 17.19 6.01 36.57 2.73
749 971 3.084039 AGCACAACCATTGGATGTAGTG 58.916 45.455 17.19 13.45 36.57 2.74
750 972 2.819608 GCACAACCATTGGATGTAGTGT 59.180 45.455 17.19 5.05 36.57 3.55
751 973 3.119849 GCACAACCATTGGATGTAGTGTC 60.120 47.826 17.19 2.98 36.57 3.67
752 974 3.125146 CACAACCATTGGATGTAGTGTCG 59.875 47.826 17.19 1.97 36.57 4.35
753 975 3.244422 ACAACCATTGGATGTAGTGTCGT 60.244 43.478 16.24 0.00 36.95 4.34
754 976 3.247006 ACCATTGGATGTAGTGTCGTC 57.753 47.619 10.37 0.00 0.00 4.20
755 977 2.832129 ACCATTGGATGTAGTGTCGTCT 59.168 45.455 10.37 0.00 0.00 4.18
756 978 3.119101 ACCATTGGATGTAGTGTCGTCTC 60.119 47.826 10.37 0.00 0.00 3.36
757 979 3.448686 CATTGGATGTAGTGTCGTCTCC 58.551 50.000 0.00 0.00 0.00 3.71
758 980 2.209690 TGGATGTAGTGTCGTCTCCA 57.790 50.000 0.00 0.00 0.00 3.86
759 981 2.521126 TGGATGTAGTGTCGTCTCCAA 58.479 47.619 0.00 0.00 30.15 3.53
760 982 2.894765 TGGATGTAGTGTCGTCTCCAAA 59.105 45.455 0.00 0.00 30.15 3.28
761 983 3.513912 TGGATGTAGTGTCGTCTCCAAAT 59.486 43.478 0.00 0.00 30.15 2.32
762 984 4.113354 GGATGTAGTGTCGTCTCCAAATC 58.887 47.826 0.00 0.00 0.00 2.17
763 985 3.211803 TGTAGTGTCGTCTCCAAATCG 57.788 47.619 0.00 0.00 0.00 3.34
764 986 2.094906 TGTAGTGTCGTCTCCAAATCGG 60.095 50.000 0.00 0.00 0.00 4.18
765 987 0.389948 AGTGTCGTCTCCAAATCGGC 60.390 55.000 0.00 0.00 33.14 5.54
766 988 1.079405 TGTCGTCTCCAAATCGGCC 60.079 57.895 0.00 0.00 33.14 6.13
767 989 1.079405 GTCGTCTCCAAATCGGCCA 60.079 57.895 2.24 0.00 33.14 5.36
768 990 1.084370 GTCGTCTCCAAATCGGCCAG 61.084 60.000 2.24 0.00 33.14 4.85
769 991 2.464459 CGTCTCCAAATCGGCCAGC 61.464 63.158 2.24 0.00 33.14 4.85
770 992 2.125147 TCTCCAAATCGGCCAGCG 60.125 61.111 2.24 0.00 33.14 5.18
771 993 2.436646 CTCCAAATCGGCCAGCGT 60.437 61.111 2.24 0.00 33.14 5.07
772 994 2.745884 TCCAAATCGGCCAGCGTG 60.746 61.111 2.24 0.00 33.14 5.34
773 995 3.055719 CCAAATCGGCCAGCGTGT 61.056 61.111 2.24 0.00 0.00 4.49
774 996 2.176546 CAAATCGGCCAGCGTGTG 59.823 61.111 2.24 0.00 0.00 3.82
775 997 2.281484 AAATCGGCCAGCGTGTGT 60.281 55.556 2.24 0.00 0.00 3.72
776 998 2.325082 AAATCGGCCAGCGTGTGTC 61.325 57.895 2.24 0.00 0.00 3.67
780 1002 3.276846 GGCCAGCGTGTGTCGTTT 61.277 61.111 0.00 0.00 42.13 3.60
781 1003 2.052237 GCCAGCGTGTGTCGTTTG 60.052 61.111 0.00 0.00 42.13 2.93
782 1004 2.052237 CCAGCGTGTGTCGTTTGC 60.052 61.111 0.00 0.00 42.13 3.68
783 1005 2.534019 CCAGCGTGTGTCGTTTGCT 61.534 57.895 0.00 0.00 42.13 3.91
784 1006 1.218875 CCAGCGTGTGTCGTTTGCTA 61.219 55.000 0.00 0.00 42.13 3.49
785 1007 0.579630 CAGCGTGTGTCGTTTGCTAA 59.420 50.000 0.00 0.00 42.13 3.09
786 1008 0.859232 AGCGTGTGTCGTTTGCTAAG 59.141 50.000 0.00 0.00 42.13 2.18
787 1009 0.580104 GCGTGTGTCGTTTGCTAAGT 59.420 50.000 0.00 0.00 42.13 2.24
788 1010 1.788308 GCGTGTGTCGTTTGCTAAGTA 59.212 47.619 0.00 0.00 42.13 2.24
789 1011 2.160013 GCGTGTGTCGTTTGCTAAGTAG 60.160 50.000 0.00 0.00 42.13 2.57
790 1012 3.047796 CGTGTGTCGTTTGCTAAGTAGT 58.952 45.455 0.00 0.00 34.52 2.73
791 1013 3.488310 CGTGTGTCGTTTGCTAAGTAGTT 59.512 43.478 0.00 0.00 34.52 2.24
792 1014 4.026310 CGTGTGTCGTTTGCTAAGTAGTTT 60.026 41.667 0.00 0.00 34.52 2.66
793 1015 5.429615 GTGTGTCGTTTGCTAAGTAGTTTC 58.570 41.667 0.00 0.00 0.00 2.78
916 1407 3.306472 TGCCTTTGTTTCCACCTAACT 57.694 42.857 0.00 0.00 0.00 2.24
1224 1719 2.346365 GTCACCCTGTCGTTCCCC 59.654 66.667 0.00 0.00 0.00 4.81
1291 1786 0.029567 CAGCGATGACTACGACTCCC 59.970 60.000 0.00 0.00 0.00 4.30
1521 2016 2.207924 GGACCTGGACGTGGACTGT 61.208 63.158 0.00 0.00 0.00 3.55
1680 2175 0.173481 TCAAGATCGTCTTCTGCCCG 59.827 55.000 0.00 0.00 33.78 6.13
1733 2233 0.250814 TAGGCTAGCTAGACCGGCTC 60.251 60.000 23.47 3.37 40.74 4.70
1754 2254 3.188786 GTCACTCACGATGCCGGC 61.189 66.667 22.73 22.73 40.78 6.13
1861 2361 1.699083 TGATCTTGAGCACTTGACCCA 59.301 47.619 0.00 0.00 0.00 4.51
1937 2437 3.447229 AGCAGGCTTAGTTTGTGTTGTTT 59.553 39.130 0.00 0.00 0.00 2.83
2065 2568 1.480789 TGTCCGGTAGCTTGCATCTA 58.519 50.000 0.00 0.00 0.00 1.98
2084 2587 5.777850 TCTATCGACCGATTAATGTTCCA 57.222 39.130 10.31 0.00 36.17 3.53
2178 2684 2.350522 GTTCAACATGAGCTCGTCCAT 58.649 47.619 5.16 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.592669 GTCCATGATGCCGACGAGG 60.593 63.158 0.00 0.00 44.97 4.63
14 15 4.018609 GTCCATGATGCCGACGAG 57.981 61.111 0.00 0.00 0.00 4.18
17 18 2.717580 TATACGTCCATGATGCCGAC 57.282 50.000 9.22 1.51 0.00 4.79
18 19 3.737032 TTTATACGTCCATGATGCCGA 57.263 42.857 9.22 0.00 0.00 5.54
19 20 4.034626 TGTTTTTATACGTCCATGATGCCG 59.965 41.667 0.00 1.95 0.00 5.69
20 21 5.493133 TGTTTTTATACGTCCATGATGCC 57.507 39.130 0.00 0.00 0.00 4.40
21 22 6.781138 TCTTGTTTTTATACGTCCATGATGC 58.219 36.000 0.00 0.00 0.00 3.91
22 23 9.787532 AAATCTTGTTTTTATACGTCCATGATG 57.212 29.630 0.00 0.00 0.00 3.07
23 24 9.787532 CAAATCTTGTTTTTATACGTCCATGAT 57.212 29.630 0.00 0.00 0.00 2.45
24 25 9.004717 TCAAATCTTGTTTTTATACGTCCATGA 57.995 29.630 0.00 0.00 0.00 3.07
25 26 9.619316 TTCAAATCTTGTTTTTATACGTCCATG 57.381 29.630 0.00 0.00 0.00 3.66
26 27 9.620660 GTTCAAATCTTGTTTTTATACGTCCAT 57.379 29.630 0.00 0.00 0.00 3.41
27 28 8.842280 AGTTCAAATCTTGTTTTTATACGTCCA 58.158 29.630 0.00 0.00 0.00 4.02
28 29 9.113876 CAGTTCAAATCTTGTTTTTATACGTCC 57.886 33.333 0.00 0.00 0.00 4.79
29 30 9.659830 ACAGTTCAAATCTTGTTTTTATACGTC 57.340 29.630 0.00 0.00 0.00 4.34
36 37 9.979578 TGCATATACAGTTCAAATCTTGTTTTT 57.020 25.926 0.00 0.00 0.00 1.94
37 38 9.410556 GTGCATATACAGTTCAAATCTTGTTTT 57.589 29.630 0.00 0.00 0.00 2.43
38 39 7.750458 CGTGCATATACAGTTCAAATCTTGTTT 59.250 33.333 0.00 0.00 0.00 2.83
39 40 7.094805 ACGTGCATATACAGTTCAAATCTTGTT 60.095 33.333 0.00 0.00 0.00 2.83
40 41 6.371548 ACGTGCATATACAGTTCAAATCTTGT 59.628 34.615 0.00 0.00 0.00 3.16
41 42 6.775088 ACGTGCATATACAGTTCAAATCTTG 58.225 36.000 0.00 0.00 0.00 3.02
42 43 6.037172 GGACGTGCATATACAGTTCAAATCTT 59.963 38.462 0.63 0.00 0.00 2.40
43 44 5.523916 GGACGTGCATATACAGTTCAAATCT 59.476 40.000 0.63 0.00 0.00 2.40
44 45 5.293324 TGGACGTGCATATACAGTTCAAATC 59.707 40.000 5.33 0.00 0.00 2.17
45 46 5.182487 TGGACGTGCATATACAGTTCAAAT 58.818 37.500 5.33 0.00 0.00 2.32
46 47 4.570930 TGGACGTGCATATACAGTTCAAA 58.429 39.130 5.33 0.00 0.00 2.69
47 48 4.195225 TGGACGTGCATATACAGTTCAA 57.805 40.909 5.33 0.00 0.00 2.69
48 49 3.878160 TGGACGTGCATATACAGTTCA 57.122 42.857 5.33 0.00 0.00 3.18
49 50 3.059597 GCATGGACGTGCATATACAGTTC 60.060 47.826 22.75 1.40 44.43 3.01
50 51 2.872245 GCATGGACGTGCATATACAGTT 59.128 45.455 22.75 0.00 44.43 3.16
51 52 2.483876 GCATGGACGTGCATATACAGT 58.516 47.619 22.75 0.00 44.43 3.55
52 53 1.800586 GGCATGGACGTGCATATACAG 59.199 52.381 22.75 10.88 46.81 2.74
53 54 1.139853 TGGCATGGACGTGCATATACA 59.860 47.619 22.75 17.41 46.81 2.29
54 55 1.877637 TGGCATGGACGTGCATATAC 58.122 50.000 22.75 15.13 46.81 1.47
55 56 2.158827 ACTTGGCATGGACGTGCATATA 60.159 45.455 22.75 8.93 46.81 0.86
56 57 1.311859 CTTGGCATGGACGTGCATAT 58.688 50.000 22.75 0.00 46.81 1.78
57 58 0.035534 ACTTGGCATGGACGTGCATA 60.036 50.000 22.75 4.41 46.81 3.14
58 59 0.895100 AACTTGGCATGGACGTGCAT 60.895 50.000 17.64 17.64 46.81 3.96
59 60 0.250510 TAACTTGGCATGGACGTGCA 60.251 50.000 13.59 13.59 46.81 4.57
60 61 0.168128 GTAACTTGGCATGGACGTGC 59.832 55.000 7.96 7.96 44.31 5.34
61 62 0.442310 CGTAACTTGGCATGGACGTG 59.558 55.000 16.67 0.00 0.00 4.49
62 63 0.672401 CCGTAACTTGGCATGGACGT 60.672 55.000 20.56 0.00 0.00 4.34
63 64 0.390603 TCCGTAACTTGGCATGGACG 60.391 55.000 17.47 17.47 0.00 4.79
64 65 1.816074 TTCCGTAACTTGGCATGGAC 58.184 50.000 5.31 2.07 29.43 4.02
65 66 2.026729 TGATTCCGTAACTTGGCATGGA 60.027 45.455 5.31 0.00 0.00 3.41
66 67 2.355756 CTGATTCCGTAACTTGGCATGG 59.644 50.000 5.31 0.00 0.00 3.66
67 68 3.009723 ACTGATTCCGTAACTTGGCATG 58.990 45.455 0.00 0.00 0.00 4.06
68 69 3.350219 ACTGATTCCGTAACTTGGCAT 57.650 42.857 0.00 0.00 0.00 4.40
69 70 2.851263 ACTGATTCCGTAACTTGGCA 57.149 45.000 0.00 0.00 0.00 4.92
70 71 3.071479 TGAACTGATTCCGTAACTTGGC 58.929 45.455 0.00 0.00 33.49 4.52
71 72 5.181245 ACATTGAACTGATTCCGTAACTTGG 59.819 40.000 0.00 0.00 33.49 3.61
72 73 6.241207 ACATTGAACTGATTCCGTAACTTG 57.759 37.500 0.00 0.00 33.49 3.16
73 74 8.561738 AATACATTGAACTGATTCCGTAACTT 57.438 30.769 0.00 0.00 33.49 2.66
74 75 8.561738 AAATACATTGAACTGATTCCGTAACT 57.438 30.769 0.00 0.00 33.49 2.24
77 78 9.438228 TGTAAAATACATTGAACTGATTCCGTA 57.562 29.630 0.00 0.00 31.67 4.02
78 79 8.330466 TGTAAAATACATTGAACTGATTCCGT 57.670 30.769 0.00 0.00 31.67 4.69
79 80 9.277565 CTTGTAAAATACATTGAACTGATTCCG 57.722 33.333 0.00 0.00 38.68 4.30
85 86 9.398170 CCTGAACTTGTAAAATACATTGAACTG 57.602 33.333 0.00 0.00 38.68 3.16
86 87 8.082242 GCCTGAACTTGTAAAATACATTGAACT 58.918 33.333 0.00 0.00 38.68 3.01
87 88 7.865385 TGCCTGAACTTGTAAAATACATTGAAC 59.135 33.333 0.00 0.00 38.68 3.18
88 89 7.865385 GTGCCTGAACTTGTAAAATACATTGAA 59.135 33.333 0.00 0.00 38.68 2.69
89 90 7.230510 AGTGCCTGAACTTGTAAAATACATTGA 59.769 33.333 0.00 0.00 38.68 2.57
90 91 7.370383 AGTGCCTGAACTTGTAAAATACATTG 58.630 34.615 0.00 0.00 38.68 2.82
91 92 7.524717 AGTGCCTGAACTTGTAAAATACATT 57.475 32.000 0.00 0.00 38.68 2.71
92 93 8.630054 TTAGTGCCTGAACTTGTAAAATACAT 57.370 30.769 0.00 0.00 38.68 2.29
93 94 8.453238 TTTAGTGCCTGAACTTGTAAAATACA 57.547 30.769 0.00 0.00 36.79 2.29
94 95 8.565416 ACTTTAGTGCCTGAACTTGTAAAATAC 58.435 33.333 0.00 0.00 0.00 1.89
95 96 8.564574 CACTTTAGTGCCTGAACTTGTAAAATA 58.435 33.333 0.00 0.00 39.39 1.40
96 97 7.425606 CACTTTAGTGCCTGAACTTGTAAAAT 58.574 34.615 0.00 0.00 39.39 1.82
97 98 6.791303 CACTTTAGTGCCTGAACTTGTAAAA 58.209 36.000 0.00 0.00 39.39 1.52
98 99 6.371809 CACTTTAGTGCCTGAACTTGTAAA 57.628 37.500 0.00 0.00 39.39 2.01
113 114 3.605634 TGCCACGAATATGCACTTTAGT 58.394 40.909 0.00 0.00 0.00 2.24
114 115 4.094887 ACTTGCCACGAATATGCACTTTAG 59.905 41.667 0.00 0.00 34.16 1.85
115 116 4.006989 ACTTGCCACGAATATGCACTTTA 58.993 39.130 0.00 0.00 34.16 1.85
116 117 2.819608 ACTTGCCACGAATATGCACTTT 59.180 40.909 0.00 0.00 34.16 2.66
117 118 2.436417 ACTTGCCACGAATATGCACTT 58.564 42.857 0.00 0.00 34.16 3.16
118 119 2.113860 ACTTGCCACGAATATGCACT 57.886 45.000 0.00 0.00 34.16 4.40
119 120 2.161410 TGAACTTGCCACGAATATGCAC 59.839 45.455 0.00 0.00 34.16 4.57
120 121 2.431454 TGAACTTGCCACGAATATGCA 58.569 42.857 0.00 0.00 0.00 3.96
121 122 3.429085 CTTGAACTTGCCACGAATATGC 58.571 45.455 0.00 0.00 0.00 3.14
122 123 3.119884 TGCTTGAACTTGCCACGAATATG 60.120 43.478 0.00 0.00 0.00 1.78
123 124 3.081061 TGCTTGAACTTGCCACGAATAT 58.919 40.909 0.00 0.00 0.00 1.28
124 125 2.225491 GTGCTTGAACTTGCCACGAATA 59.775 45.455 0.00 0.00 0.00 1.75
125 126 1.001378 GTGCTTGAACTTGCCACGAAT 60.001 47.619 0.00 0.00 0.00 3.34
126 127 0.380378 GTGCTTGAACTTGCCACGAA 59.620 50.000 0.00 0.00 0.00 3.85
127 128 1.771073 CGTGCTTGAACTTGCCACGA 61.771 55.000 5.65 0.00 36.56 4.35
128 129 1.369209 CGTGCTTGAACTTGCCACG 60.369 57.895 0.00 0.00 0.00 4.94
129 130 0.040958 CTCGTGCTTGAACTTGCCAC 60.041 55.000 0.00 0.00 0.00 5.01
130 131 0.463654 ACTCGTGCTTGAACTTGCCA 60.464 50.000 0.00 0.00 0.00 4.92
131 132 0.040958 CACTCGTGCTTGAACTTGCC 60.041 55.000 0.00 0.00 0.00 4.52
132 133 0.937304 TCACTCGTGCTTGAACTTGC 59.063 50.000 0.00 0.00 0.00 4.01
133 134 2.545526 ACATCACTCGTGCTTGAACTTG 59.454 45.455 6.77 0.00 0.00 3.16
134 135 2.838736 ACATCACTCGTGCTTGAACTT 58.161 42.857 6.77 0.00 0.00 2.66
135 136 2.533266 ACATCACTCGTGCTTGAACT 57.467 45.000 6.77 0.00 0.00 3.01
136 137 4.928661 AATACATCACTCGTGCTTGAAC 57.071 40.909 6.77 0.00 0.00 3.18
137 138 5.350365 GGTAAATACATCACTCGTGCTTGAA 59.650 40.000 6.77 0.00 0.00 2.69
138 139 4.868171 GGTAAATACATCACTCGTGCTTGA 59.132 41.667 6.77 0.00 0.00 3.02
139 140 4.870426 AGGTAAATACATCACTCGTGCTTG 59.130 41.667 0.00 0.00 0.00 4.01
140 141 5.086104 AGGTAAATACATCACTCGTGCTT 57.914 39.130 0.00 0.00 0.00 3.91
141 142 4.402793 AGAGGTAAATACATCACTCGTGCT 59.597 41.667 7.84 0.00 39.29 4.40
142 143 4.683832 AGAGGTAAATACATCACTCGTGC 58.316 43.478 7.84 0.00 39.29 5.34
143 144 5.915758 GCTAGAGGTAAATACATCACTCGTG 59.084 44.000 7.84 0.00 39.29 4.35
144 145 5.593095 TGCTAGAGGTAAATACATCACTCGT 59.407 40.000 7.84 0.00 39.29 4.18
145 146 6.073327 TGCTAGAGGTAAATACATCACTCG 57.927 41.667 7.84 0.00 39.29 4.18
146 147 8.894768 AAATGCTAGAGGTAAATACATCACTC 57.105 34.615 7.84 0.00 39.29 3.51
147 148 9.686683 AAAAATGCTAGAGGTAAATACATCACT 57.313 29.630 7.84 0.00 39.29 3.41
172 173 8.696374 TGGACTAACACCAATGAAAACATTAAA 58.304 29.630 0.00 0.00 34.25 1.52
214 215 6.986817 CCTCTCTGTACAAAATACAGGTATGG 59.013 42.308 12.82 7.64 43.67 2.74
222 223 7.159372 TGGAAAGACCTCTCTGTACAAAATAC 58.841 38.462 0.00 0.00 39.86 1.89
229 230 4.602340 TGTTGGAAAGACCTCTCTGTAC 57.398 45.455 0.00 0.00 39.86 2.90
276 278 1.219935 GTGGGCTAACACCTACGGG 59.780 63.158 0.00 0.00 35.34 5.28
373 378 2.088423 TGTTCGCATAACCCCAATGAC 58.912 47.619 0.00 0.00 0.00 3.06
392 397 8.961294 AAATGTATTTGGAAGAGAGAGAGATG 57.039 34.615 0.00 0.00 0.00 2.90
405 442 5.716228 AGCATGAACCTGAAATGTATTTGGA 59.284 36.000 0.00 0.00 0.00 3.53
406 443 5.969423 AGCATGAACCTGAAATGTATTTGG 58.031 37.500 0.00 0.00 0.00 3.28
408 445 7.067494 GGAGTAGCATGAACCTGAAATGTATTT 59.933 37.037 0.00 0.00 0.00 1.40
409 446 6.543831 GGAGTAGCATGAACCTGAAATGTATT 59.456 38.462 0.00 0.00 0.00 1.89
410 447 6.058183 GGAGTAGCATGAACCTGAAATGTAT 58.942 40.000 0.00 0.00 0.00 2.29
412 449 4.265073 GGAGTAGCATGAACCTGAAATGT 58.735 43.478 0.00 0.00 0.00 2.71
428 484 2.660670 ATAGTGGACGGAGGGAGTAG 57.339 55.000 0.00 0.00 0.00 2.57
454 510 8.744652 TCATTCCGGTGTTCATATTAAAAACAT 58.255 29.630 0.00 0.00 35.54 2.71
461 520 8.041919 TGTTTACTCATTCCGGTGTTCATATTA 58.958 33.333 0.00 0.00 0.00 0.98
572 794 9.980780 TGTCACATATGTATTTACATTTGAACG 57.019 29.630 20.71 12.19 43.99 3.95
635 857 1.818642 AGCAGCACTCAGTGGAAATC 58.181 50.000 7.00 0.00 33.64 2.17
636 858 2.038952 TGTAGCAGCACTCAGTGGAAAT 59.961 45.455 7.00 0.00 33.64 2.17
637 859 1.416030 TGTAGCAGCACTCAGTGGAAA 59.584 47.619 7.00 0.00 33.64 3.13
638 860 1.047801 TGTAGCAGCACTCAGTGGAA 58.952 50.000 7.00 0.00 33.64 3.53
639 861 0.318441 GTGTAGCAGCACTCAGTGGA 59.682 55.000 7.00 0.00 36.51 4.02
640 862 0.033920 TGTGTAGCAGCACTCAGTGG 59.966 55.000 7.00 0.00 39.89 4.00
641 863 1.000171 TCTGTGTAGCAGCACTCAGTG 60.000 52.381 18.39 0.00 44.66 3.66
642 864 1.000283 GTCTGTGTAGCAGCACTCAGT 60.000 52.381 18.39 0.00 44.66 3.41
643 865 1.707632 GTCTGTGTAGCAGCACTCAG 58.292 55.000 15.34 15.34 44.66 3.35
644 866 0.039165 CGTCTGTGTAGCAGCACTCA 60.039 55.000 11.09 0.00 44.66 3.41
645 867 0.241213 TCGTCTGTGTAGCAGCACTC 59.759 55.000 11.09 0.00 44.66 3.51
646 868 0.039074 GTCGTCTGTGTAGCAGCACT 60.039 55.000 11.09 0.00 44.66 4.40
647 869 1.337817 CGTCGTCTGTGTAGCAGCAC 61.338 60.000 0.00 4.04 44.66 4.40
648 870 1.081442 CGTCGTCTGTGTAGCAGCA 60.081 57.895 0.00 0.00 44.66 4.41
649 871 2.437343 GCGTCGTCTGTGTAGCAGC 61.437 63.158 0.00 0.00 44.66 5.25
650 872 1.067743 CAGCGTCGTCTGTGTAGCAG 61.068 60.000 8.07 0.00 46.34 4.24
651 873 1.081442 CAGCGTCGTCTGTGTAGCA 60.081 57.895 8.07 0.00 0.00 3.49
652 874 2.437343 GCAGCGTCGTCTGTGTAGC 61.437 63.158 15.01 1.16 36.49 3.58
653 875 0.456824 ATGCAGCGTCGTCTGTGTAG 60.457 55.000 15.01 0.00 36.49 2.74
654 876 0.806241 TATGCAGCGTCGTCTGTGTA 59.194 50.000 15.01 8.04 36.49 2.90
655 877 0.456824 CTATGCAGCGTCGTCTGTGT 60.457 55.000 15.01 8.75 36.49 3.72
656 878 1.746727 GCTATGCAGCGTCGTCTGTG 61.747 60.000 15.01 1.44 38.22 3.66
657 879 1.517257 GCTATGCAGCGTCGTCTGT 60.517 57.895 15.01 3.10 38.22 3.41
658 880 3.303605 GCTATGCAGCGTCGTCTG 58.696 61.111 10.96 10.96 38.22 3.51
667 889 1.334869 GTCCCAAAATCGGCTATGCAG 59.665 52.381 0.00 0.00 0.00 4.41
668 890 1.388547 GTCCCAAAATCGGCTATGCA 58.611 50.000 0.00 0.00 0.00 3.96
669 891 0.307760 CGTCCCAAAATCGGCTATGC 59.692 55.000 0.00 0.00 0.00 3.14
670 892 1.597663 GTCGTCCCAAAATCGGCTATG 59.402 52.381 0.00 0.00 0.00 2.23
671 893 1.208535 TGTCGTCCCAAAATCGGCTAT 59.791 47.619 0.00 0.00 0.00 2.97
672 894 0.609151 TGTCGTCCCAAAATCGGCTA 59.391 50.000 0.00 0.00 0.00 3.93
673 895 0.953960 GTGTCGTCCCAAAATCGGCT 60.954 55.000 0.00 0.00 0.00 5.52
674 896 0.953960 AGTGTCGTCCCAAAATCGGC 60.954 55.000 0.00 0.00 0.00 5.54
675 897 0.796312 CAGTGTCGTCCCAAAATCGG 59.204 55.000 0.00 0.00 0.00 4.18
676 898 1.459592 GACAGTGTCGTCCCAAAATCG 59.540 52.381 7.68 0.00 0.00 3.34
677 899 2.489971 TGACAGTGTCGTCCCAAAATC 58.510 47.619 18.17 0.00 34.95 2.17
678 900 2.631160 TGACAGTGTCGTCCCAAAAT 57.369 45.000 18.17 0.00 34.95 1.82
679 901 2.404923 TTGACAGTGTCGTCCCAAAA 57.595 45.000 18.17 2.49 34.95 2.44
680 902 2.158885 TGATTGACAGTGTCGTCCCAAA 60.159 45.455 18.17 6.37 34.95 3.28
681 903 1.414550 TGATTGACAGTGTCGTCCCAA 59.585 47.619 18.17 7.71 34.95 4.12
682 904 1.000843 CTGATTGACAGTGTCGTCCCA 59.999 52.381 18.17 11.78 41.30 4.37
683 905 1.272490 TCTGATTGACAGTGTCGTCCC 59.728 52.381 18.17 8.05 45.86 4.46
684 906 2.329379 GTCTGATTGACAGTGTCGTCC 58.671 52.381 18.17 9.70 45.86 4.79
694 916 2.617308 CTGCATGGATGGTCTGATTGAC 59.383 50.000 0.00 0.00 44.63 3.18
695 917 2.506644 TCTGCATGGATGGTCTGATTGA 59.493 45.455 0.00 0.00 0.00 2.57
696 918 2.879026 CTCTGCATGGATGGTCTGATTG 59.121 50.000 0.00 0.00 0.00 2.67
697 919 2.158652 CCTCTGCATGGATGGTCTGATT 60.159 50.000 0.00 0.00 0.00 2.57
698 920 1.420514 CCTCTGCATGGATGGTCTGAT 59.579 52.381 0.00 0.00 0.00 2.90
699 921 0.835276 CCTCTGCATGGATGGTCTGA 59.165 55.000 0.00 0.00 0.00 3.27
700 922 0.835276 TCCTCTGCATGGATGGTCTG 59.165 55.000 4.66 0.00 0.00 3.51
701 923 1.817087 ATCCTCTGCATGGATGGTCT 58.183 50.000 17.38 0.00 42.22 3.85
702 924 3.777106 TTATCCTCTGCATGGATGGTC 57.223 47.619 23.67 0.00 43.48 4.02
703 925 3.461085 AGTTTATCCTCTGCATGGATGGT 59.539 43.478 23.67 8.14 43.48 3.55
704 926 3.819337 CAGTTTATCCTCTGCATGGATGG 59.181 47.826 23.67 7.65 43.48 3.51
705 927 4.458397 ACAGTTTATCCTCTGCATGGATG 58.542 43.478 23.67 14.55 43.48 3.51
706 928 4.785346 ACAGTTTATCCTCTGCATGGAT 57.215 40.909 20.53 20.53 45.37 3.41
707 929 4.443457 GCTACAGTTTATCCTCTGCATGGA 60.443 45.833 10.46 10.46 38.06 3.41
708 930 3.812053 GCTACAGTTTATCCTCTGCATGG 59.188 47.826 0.00 0.00 35.37 3.66
709 931 4.272018 GTGCTACAGTTTATCCTCTGCATG 59.728 45.833 0.00 0.00 35.37 4.06
710 932 4.080919 TGTGCTACAGTTTATCCTCTGCAT 60.081 41.667 0.00 0.00 35.37 3.96
711 933 3.260632 TGTGCTACAGTTTATCCTCTGCA 59.739 43.478 0.00 0.00 35.37 4.41
712 934 3.861840 TGTGCTACAGTTTATCCTCTGC 58.138 45.455 0.00 0.00 35.37 4.26
713 935 4.631813 GGTTGTGCTACAGTTTATCCTCTG 59.368 45.833 0.00 0.00 37.65 3.35
714 936 4.286032 TGGTTGTGCTACAGTTTATCCTCT 59.714 41.667 0.00 0.00 0.00 3.69
715 937 4.575885 TGGTTGTGCTACAGTTTATCCTC 58.424 43.478 0.00 0.00 0.00 3.71
716 938 4.634012 TGGTTGTGCTACAGTTTATCCT 57.366 40.909 0.00 0.00 0.00 3.24
717 939 5.393027 CCAATGGTTGTGCTACAGTTTATCC 60.393 44.000 0.00 0.00 0.00 2.59
718 940 5.414454 TCCAATGGTTGTGCTACAGTTTATC 59.586 40.000 0.00 0.00 0.00 1.75
719 941 5.321102 TCCAATGGTTGTGCTACAGTTTAT 58.679 37.500 0.00 0.00 0.00 1.40
720 942 4.720046 TCCAATGGTTGTGCTACAGTTTA 58.280 39.130 0.00 0.00 0.00 2.01
721 943 3.561143 TCCAATGGTTGTGCTACAGTTT 58.439 40.909 0.00 0.00 0.00 2.66
722 944 3.222173 TCCAATGGTTGTGCTACAGTT 57.778 42.857 0.00 0.00 0.00 3.16
723 945 2.949177 TCCAATGGTTGTGCTACAGT 57.051 45.000 0.00 0.00 0.00 3.55
724 946 3.084039 ACATCCAATGGTTGTGCTACAG 58.916 45.455 14.61 0.00 34.73 2.74
725 947 3.153369 ACATCCAATGGTTGTGCTACA 57.847 42.857 14.61 0.00 34.73 2.74
726 948 4.094887 CACTACATCCAATGGTTGTGCTAC 59.905 45.833 22.43 0.00 36.45 3.58
727 949 4.260985 CACTACATCCAATGGTTGTGCTA 58.739 43.478 22.43 5.46 36.45 3.49
728 950 3.084039 CACTACATCCAATGGTTGTGCT 58.916 45.455 22.43 7.39 36.45 4.40
729 951 2.819608 ACACTACATCCAATGGTTGTGC 59.180 45.455 22.43 0.00 36.45 4.57
730 952 3.125146 CGACACTACATCCAATGGTTGTG 59.875 47.826 22.43 15.35 36.45 3.33
731 953 3.244422 ACGACACTACATCCAATGGTTGT 60.244 43.478 18.68 18.68 38.85 3.32
732 954 3.334691 ACGACACTACATCCAATGGTTG 58.665 45.455 8.70 8.70 33.60 3.77
733 955 3.260884 AGACGACACTACATCCAATGGTT 59.739 43.478 0.00 0.00 33.60 3.67
734 956 2.832129 AGACGACACTACATCCAATGGT 59.168 45.455 0.00 0.00 33.60 3.55
735 957 3.448686 GAGACGACACTACATCCAATGG 58.551 50.000 0.00 0.00 33.60 3.16
736 958 3.119137 TGGAGACGACACTACATCCAATG 60.119 47.826 0.00 0.00 34.02 2.82
737 959 3.096852 TGGAGACGACACTACATCCAAT 58.903 45.455 0.00 0.00 34.02 3.16
738 960 2.521126 TGGAGACGACACTACATCCAA 58.479 47.619 0.00 0.00 34.02 3.53
739 961 2.209690 TGGAGACGACACTACATCCA 57.790 50.000 0.00 0.00 34.54 3.41
740 962 3.587797 TTTGGAGACGACACTACATCC 57.412 47.619 0.00 0.00 30.29 3.51
741 963 3.791887 CGATTTGGAGACGACACTACATC 59.208 47.826 0.00 0.00 30.29 3.06
742 964 3.428999 CCGATTTGGAGACGACACTACAT 60.429 47.826 0.00 0.00 42.00 2.29
743 965 2.094906 CCGATTTGGAGACGACACTACA 60.095 50.000 0.00 0.00 42.00 2.74
744 966 2.527100 CCGATTTGGAGACGACACTAC 58.473 52.381 0.00 0.00 42.00 2.73
745 967 1.135199 GCCGATTTGGAGACGACACTA 60.135 52.381 0.00 0.00 42.00 2.74
746 968 0.389948 GCCGATTTGGAGACGACACT 60.390 55.000 0.00 0.00 42.00 3.55
747 969 1.359459 GGCCGATTTGGAGACGACAC 61.359 60.000 0.00 0.00 42.00 3.67
748 970 1.079405 GGCCGATTTGGAGACGACA 60.079 57.895 0.00 0.00 42.00 4.35
749 971 1.079405 TGGCCGATTTGGAGACGAC 60.079 57.895 0.00 0.00 42.00 4.34
750 972 1.218047 CTGGCCGATTTGGAGACGA 59.782 57.895 0.00 0.00 42.00 4.20
751 973 2.464459 GCTGGCCGATTTGGAGACG 61.464 63.158 0.00 0.00 42.00 4.18
752 974 2.464459 CGCTGGCCGATTTGGAGAC 61.464 63.158 0.00 0.00 42.00 3.36
753 975 2.125147 CGCTGGCCGATTTGGAGA 60.125 61.111 0.00 0.00 42.00 3.71
754 976 2.436646 ACGCTGGCCGATTTGGAG 60.437 61.111 0.00 0.00 42.00 3.86
755 977 2.745884 CACGCTGGCCGATTTGGA 60.746 61.111 0.00 0.00 42.00 3.53
756 978 3.055719 ACACGCTGGCCGATTTGG 61.056 61.111 0.00 0.00 41.02 3.28
757 979 2.176546 CACACGCTGGCCGATTTG 59.823 61.111 0.00 0.00 41.02 2.32
758 980 2.281484 ACACACGCTGGCCGATTT 60.281 55.556 0.00 0.00 41.02 2.17
759 981 2.742372 GACACACGCTGGCCGATT 60.742 61.111 0.00 0.00 41.02 3.34
763 985 3.276846 AAACGACACACGCTGGCC 61.277 61.111 0.00 0.00 46.94 5.36
764 986 2.052237 CAAACGACACACGCTGGC 60.052 61.111 0.00 0.00 46.94 4.85
765 987 1.218875 TAGCAAACGACACACGCTGG 61.219 55.000 0.00 0.00 46.94 4.85
766 988 0.579630 TTAGCAAACGACACACGCTG 59.420 50.000 0.00 0.00 46.94 5.18
767 989 0.859232 CTTAGCAAACGACACACGCT 59.141 50.000 0.00 0.00 46.94 5.07
768 990 0.580104 ACTTAGCAAACGACACACGC 59.420 50.000 0.00 0.00 46.94 5.34
770 992 5.399604 AAACTACTTAGCAAACGACACAC 57.600 39.130 0.00 0.00 0.00 3.82
771 993 4.207635 CGAAACTACTTAGCAAACGACACA 59.792 41.667 0.00 0.00 0.00 3.72
772 994 4.442073 TCGAAACTACTTAGCAAACGACAC 59.558 41.667 0.00 0.00 0.00 3.67
773 995 4.609947 TCGAAACTACTTAGCAAACGACA 58.390 39.130 0.00 0.00 0.00 4.35
774 996 5.758570 ATCGAAACTACTTAGCAAACGAC 57.241 39.130 0.00 0.00 0.00 4.34
775 997 6.128742 GGAAATCGAAACTACTTAGCAAACGA 60.129 38.462 0.00 0.00 0.00 3.85
776 998 6.013689 GGAAATCGAAACTACTTAGCAAACG 58.986 40.000 0.00 0.00 0.00 3.60
777 999 6.795593 GTGGAAATCGAAACTACTTAGCAAAC 59.204 38.462 0.00 0.00 0.00 2.93
778 1000 6.708949 AGTGGAAATCGAAACTACTTAGCAAA 59.291 34.615 0.00 0.00 0.00 3.68
779 1001 6.147164 CAGTGGAAATCGAAACTACTTAGCAA 59.853 38.462 0.00 0.00 0.00 3.91
780 1002 5.637810 CAGTGGAAATCGAAACTACTTAGCA 59.362 40.000 0.00 0.00 0.00 3.49
781 1003 5.638234 ACAGTGGAAATCGAAACTACTTAGC 59.362 40.000 0.00 0.00 0.00 3.09
782 1004 6.310711 GGACAGTGGAAATCGAAACTACTTAG 59.689 42.308 0.00 0.00 0.00 2.18
783 1005 6.161381 GGACAGTGGAAATCGAAACTACTTA 58.839 40.000 0.00 0.00 0.00 2.24
784 1006 4.995487 GGACAGTGGAAATCGAAACTACTT 59.005 41.667 0.00 0.00 0.00 2.24
785 1007 4.039973 TGGACAGTGGAAATCGAAACTACT 59.960 41.667 0.00 0.00 0.00 2.57
786 1008 4.312443 TGGACAGTGGAAATCGAAACTAC 58.688 43.478 0.00 0.00 0.00 2.73
787 1009 4.610605 TGGACAGTGGAAATCGAAACTA 57.389 40.909 0.00 0.00 0.00 2.24
788 1010 3.485463 TGGACAGTGGAAATCGAAACT 57.515 42.857 0.00 0.00 0.00 2.66
789 1011 3.127030 GGATGGACAGTGGAAATCGAAAC 59.873 47.826 0.00 0.00 0.00 2.78
790 1012 3.244735 TGGATGGACAGTGGAAATCGAAA 60.245 43.478 0.00 0.00 0.00 3.46
791 1013 2.304470 TGGATGGACAGTGGAAATCGAA 59.696 45.455 0.00 0.00 0.00 3.71
792 1014 1.905894 TGGATGGACAGTGGAAATCGA 59.094 47.619 0.00 0.00 0.00 3.59
793 1015 2.401583 TGGATGGACAGTGGAAATCG 57.598 50.000 0.00 0.00 0.00 3.34
849 1340 1.731433 AAGCATGCATCCATCGGCAC 61.731 55.000 21.98 0.00 43.75 5.01
906 1397 6.044637 AGGTAAAATTGTGGTAGTTAGGTGGA 59.955 38.462 0.00 0.00 0.00 4.02
1291 1786 4.179599 GGAGGAGGAGGGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
1680 2175 5.128008 AGCAAGTGACTAGTAGGAAGAATCC 59.872 44.000 0.00 0.00 46.98 3.01
1861 2361 2.433604 ACATGGCGAGATCAATCAGACT 59.566 45.455 0.00 0.00 0.00 3.24
1901 2401 7.168905 ACTAAGCCTGCTACTGTTTATTTTCT 58.831 34.615 0.00 0.00 0.00 2.52
1912 2412 3.771577 ACACAAACTAAGCCTGCTACT 57.228 42.857 0.00 0.00 0.00 2.57
2013 2513 1.258982 CGATGGTTACGAAGCTGCATC 59.741 52.381 1.02 0.00 0.00 3.91
2084 2587 1.144503 GAGGTGGAATGAGCCATGGAT 59.855 52.381 18.40 10.08 40.68 3.41
2178 2684 2.424705 GAACACCGGCGACCTGTACA 62.425 60.000 9.30 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.