Multiple sequence alignment - TraesCS4B01G142600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G142600 chr4B 100.000 4527 0 0 1 4527 188473965 188478491 0.000000e+00 8360
1 TraesCS4B01G142600 chr4B 89.706 748 56 10 2083 2827 553302031 553302760 0.000000e+00 935
2 TraesCS4B01G142600 chr6B 97.947 4042 81 2 484 4524 8906295 8910335 0.000000e+00 7003
3 TraesCS4B01G142600 chr6B 95.306 1534 65 3 3000 4527 116265070 116263538 0.000000e+00 2427
4 TraesCS4B01G142600 chr6B 94.528 1535 74 3 3000 4524 78499566 78498032 0.000000e+00 2361
5 TraesCS4B01G142600 chr6B 93.625 753 32 8 2083 2832 116265565 116264826 0.000000e+00 1110
6 TraesCS4B01G142600 chr7B 97.726 4046 89 3 484 4527 56932166 56928122 0.000000e+00 6959
7 TraesCS4B01G142600 chr7B 96.000 2550 98 4 485 3032 66276096 66278643 0.000000e+00 4141
8 TraesCS4B01G142600 chr7B 97.811 1736 32 3 2795 4524 66278201 66279936 0.000000e+00 2990
9 TraesCS4B01G142600 chr4A 97.655 4051 89 6 482 4527 709026362 709022313 0.000000e+00 6950
10 TraesCS4B01G142600 chr4A 96.604 1531 43 5 3000 4523 662042987 662041459 0.000000e+00 2531
11 TraesCS4B01G142600 chr4A 94.630 1620 80 4 479 2091 662045262 662043643 0.000000e+00 2503
12 TraesCS4B01G142600 chr4A 87.156 327 42 0 157 483 362154421 362154747 5.530000e-99 372
13 TraesCS4B01G142600 chr2B 97.911 2537 51 2 484 3019 105873021 105875556 0.000000e+00 4390
14 TraesCS4B01G142600 chr2B 98.314 1661 25 3 2795 4453 105875126 105876785 0.000000e+00 2909
15 TraesCS4B01G142600 chr2B 93.582 483 18 5 1 483 790086189 790086658 0.000000e+00 708
16 TraesCS4B01G142600 chr3B 95.398 1608 72 2 485 2091 719995018 719993412 0.000000e+00 2558
17 TraesCS4B01G142600 chr3B 95.274 1608 73 3 485 2091 720012121 720010516 0.000000e+00 2545
18 TraesCS4B01G142600 chr3B 96.342 1531 48 3 3003 4527 719992754 719991226 0.000000e+00 2510
19 TraesCS4B01G142600 chr3B 93.625 753 32 8 2083 2832 799737874 799737135 0.000000e+00 1110
20 TraesCS4B01G142600 chr3B 93.048 748 36 8 2088 2832 719993247 719992513 0.000000e+00 1079
21 TraesCS4B01G142600 chr3B 91.645 754 42 9 2083 2832 64690736 64690000 0.000000e+00 1024
22 TraesCS4B01G142600 chr3B 95.122 246 8 3 2795 3037 799737379 799737135 7.100000e-103 385
23 TraesCS4B01G142600 chr1B 94.282 1609 90 2 485 2091 669870737 669869129 0.000000e+00 2460
24 TraesCS4B01G142600 chr1B 94.157 753 28 8 2083 2832 669868968 669868229 0.000000e+00 1133
25 TraesCS4B01G142600 chr1B 90.921 749 49 11 2083 2827 587058693 587059426 0.000000e+00 989
26 TraesCS4B01G142600 chr1B 90.921 749 49 11 2083 2827 587081077 587081810 0.000000e+00 989
27 TraesCS4B01G142600 chr1B 95.122 246 8 3 2795 3037 669868473 669868229 7.100000e-103 385
28 TraesCS4B01G142600 chr5A 90.214 327 32 0 157 483 504835524 504835198 1.160000e-115 427
29 TraesCS4B01G142600 chr3A 85.627 327 31 5 157 483 522620852 522621162 3.380000e-86 329


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G142600 chr4B 188473965 188478491 4526 False 8360.0 8360 100.000000 1 4527 1 chr4B.!!$F1 4526
1 TraesCS4B01G142600 chr4B 553302031 553302760 729 False 935.0 935 89.706000 2083 2827 1 chr4B.!!$F2 744
2 TraesCS4B01G142600 chr6B 8906295 8910335 4040 False 7003.0 7003 97.947000 484 4524 1 chr6B.!!$F1 4040
3 TraesCS4B01G142600 chr6B 78498032 78499566 1534 True 2361.0 2361 94.528000 3000 4524 1 chr6B.!!$R1 1524
4 TraesCS4B01G142600 chr6B 116263538 116265565 2027 True 1768.5 2427 94.465500 2083 4527 2 chr6B.!!$R2 2444
5 TraesCS4B01G142600 chr7B 56928122 56932166 4044 True 6959.0 6959 97.726000 484 4527 1 chr7B.!!$R1 4043
6 TraesCS4B01G142600 chr7B 66276096 66279936 3840 False 3565.5 4141 96.905500 485 4524 2 chr7B.!!$F1 4039
7 TraesCS4B01G142600 chr4A 709022313 709026362 4049 True 6950.0 6950 97.655000 482 4527 1 chr4A.!!$R1 4045
8 TraesCS4B01G142600 chr4A 662041459 662045262 3803 True 2517.0 2531 95.617000 479 4523 2 chr4A.!!$R2 4044
9 TraesCS4B01G142600 chr2B 105873021 105876785 3764 False 3649.5 4390 98.112500 484 4453 2 chr2B.!!$F2 3969
10 TraesCS4B01G142600 chr3B 720010516 720012121 1605 True 2545.0 2545 95.274000 485 2091 1 chr3B.!!$R2 1606
11 TraesCS4B01G142600 chr3B 719991226 719995018 3792 True 2049.0 2558 94.929333 485 4527 3 chr3B.!!$R3 4042
12 TraesCS4B01G142600 chr3B 64690000 64690736 736 True 1024.0 1024 91.645000 2083 2832 1 chr3B.!!$R1 749
13 TraesCS4B01G142600 chr3B 799737135 799737874 739 True 747.5 1110 94.373500 2083 3037 2 chr3B.!!$R4 954
14 TraesCS4B01G142600 chr1B 669868229 669870737 2508 True 1326.0 2460 94.520333 485 3037 3 chr1B.!!$R1 2552
15 TraesCS4B01G142600 chr1B 587058693 587059426 733 False 989.0 989 90.921000 2083 2827 1 chr1B.!!$F1 744
16 TraesCS4B01G142600 chr1B 587081077 587081810 733 False 989.0 989 90.921000 2083 2827 1 chr1B.!!$F2 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.029567 GCCCGACAGTAGACGATGAG 59.970 60.000 0.00 0.0 34.91 2.90 F
330 331 0.033011 GAGTAGCTCCCCCTCAGTCA 60.033 60.000 0.00 0.0 0.00 3.41 F
353 354 0.036732 TTGGCTTCACGGCTTCATCT 59.963 50.000 0.00 0.0 39.32 2.90 F
403 404 0.101399 CTATGCTTCGTCGGCTCACT 59.899 55.000 0.00 0.0 0.00 3.41 F
422 423 0.108992 TACTGTTACAGCTTCGCCCG 60.109 55.000 12.80 0.0 34.37 6.13 F
468 469 0.250513 CAGGCCAACTCCACCTCTAC 59.749 60.000 5.01 0.0 0.00 2.59 F
474 475 0.614134 AACTCCACCTCTACCCCGTC 60.614 60.000 0.00 0.0 0.00 4.79 F
747 753 1.007038 TTGTCACGTACTGCGGTCC 60.007 57.895 0.00 0.0 46.52 4.46 F
2240 2591 2.420687 GGTCAATGAGGAAGGTGCTAGG 60.421 54.545 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1508 3.142838 GGCACATGCGGCAATCCT 61.143 61.111 6.82 0.00 43.26 3.24 R
2240 2591 4.054671 CGATGTCCAGCTTCCTCTTATTC 58.945 47.826 0.00 0.00 0.00 1.75 R
2367 2718 7.928307 TCCAATTTAGAGGCATTCATATAGC 57.072 36.000 0.00 0.00 0.00 2.97 R
2675 3026 9.753674 AGAAGAATTTAATGGACAAATACCTGA 57.246 29.630 0.00 0.00 0.00 3.86 R
2705 3056 6.701145 TGCACAAACAACTAAATAGTTCCA 57.299 33.333 2.88 0.00 44.19 3.53 R
2716 3067 5.299279 ACAGCTACTTAATGCACAAACAACT 59.701 36.000 0.00 0.00 0.00 3.16 R
2717 3068 5.519722 ACAGCTACTTAATGCACAAACAAC 58.480 37.500 0.00 0.00 0.00 3.32 R
2988 3339 4.220163 TGCACAAACATCAGATAATTGCCA 59.780 37.500 7.09 3.62 0.00 4.92 R
4406 4773 0.377203 GAAGGCGGTGATTTTAGCGG 59.623 55.000 0.00 0.00 41.47 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.607631 CAAATTCCCCCATGACATGC 57.392 50.000 10.10 0.00 0.00 4.06
22 23 4.854924 TCCCCCATGACATGCGCG 62.855 66.667 10.10 0.00 0.00 6.86
27 28 3.945434 CATGACATGCGCGCCCTC 61.945 66.667 30.77 19.74 0.00 4.30
39 40 4.785453 GCCCTCTGCTCCGGGTTG 62.785 72.222 0.00 0.00 42.67 3.77
40 41 4.785453 CCCTCTGCTCCGGGTTGC 62.785 72.222 0.00 4.70 35.65 4.17
41 42 3.710722 CCTCTGCTCCGGGTTGCT 61.711 66.667 0.00 0.00 0.00 3.91
42 43 2.125350 CTCTGCTCCGGGTTGCTC 60.125 66.667 0.00 0.00 0.00 4.26
43 44 2.604686 TCTGCTCCGGGTTGCTCT 60.605 61.111 0.00 0.00 0.00 4.09
44 45 1.304962 TCTGCTCCGGGTTGCTCTA 60.305 57.895 0.00 0.00 0.00 2.43
45 46 0.902984 TCTGCTCCGGGTTGCTCTAA 60.903 55.000 0.00 0.00 0.00 2.10
46 47 0.460987 CTGCTCCGGGTTGCTCTAAG 60.461 60.000 0.00 0.00 0.00 2.18
47 48 1.815840 GCTCCGGGTTGCTCTAAGC 60.816 63.158 0.00 0.00 42.82 3.09
48 49 1.901085 CTCCGGGTTGCTCTAAGCT 59.099 57.895 0.00 0.00 42.97 3.74
49 50 0.460987 CTCCGGGTTGCTCTAAGCTG 60.461 60.000 0.00 0.00 42.97 4.24
50 51 0.902984 TCCGGGTTGCTCTAAGCTGA 60.903 55.000 0.00 0.00 44.14 4.26
51 52 0.460987 CCGGGTTGCTCTAAGCTGAG 60.461 60.000 0.00 0.00 44.14 3.35
52 53 0.247736 CGGGTTGCTCTAAGCTGAGT 59.752 55.000 0.00 0.00 44.14 3.41
53 54 1.338200 CGGGTTGCTCTAAGCTGAGTT 60.338 52.381 0.00 0.00 44.14 3.01
54 55 2.094182 CGGGTTGCTCTAAGCTGAGTTA 60.094 50.000 0.00 0.00 44.14 2.24
55 56 3.263261 GGGTTGCTCTAAGCTGAGTTAC 58.737 50.000 0.00 0.00 42.97 2.50
56 57 3.263261 GGTTGCTCTAAGCTGAGTTACC 58.737 50.000 0.00 4.79 42.97 2.85
57 58 3.055747 GGTTGCTCTAAGCTGAGTTACCT 60.056 47.826 14.26 0.00 42.97 3.08
58 59 4.177783 GTTGCTCTAAGCTGAGTTACCTC 58.822 47.826 0.00 0.00 42.97 3.85
59 60 2.423892 TGCTCTAAGCTGAGTTACCTCG 59.576 50.000 0.00 0.00 42.97 4.63
60 61 2.424246 GCTCTAAGCTGAGTTACCTCGT 59.576 50.000 0.00 0.00 40.85 4.18
61 62 3.487879 GCTCTAAGCTGAGTTACCTCGTC 60.488 52.174 0.00 0.00 40.85 4.20
62 63 2.676839 TCTAAGCTGAGTTACCTCGTCG 59.323 50.000 0.00 0.00 40.85 5.12
63 64 0.526662 AAGCTGAGTTACCTCGTCGG 59.473 55.000 0.00 0.00 40.85 4.79
65 66 0.179169 GCTGAGTTACCTCGTCGGTC 60.179 60.000 2.51 0.00 44.93 4.79
66 67 1.451067 CTGAGTTACCTCGTCGGTCT 58.549 55.000 2.51 0.00 44.93 3.85
67 68 1.130749 CTGAGTTACCTCGTCGGTCTG 59.869 57.143 2.51 0.00 44.93 3.51
68 69 1.271001 TGAGTTACCTCGTCGGTCTGA 60.271 52.381 2.51 0.00 44.93 3.27
69 70 2.015587 GAGTTACCTCGTCGGTCTGAT 58.984 52.381 2.51 0.00 44.93 2.90
70 71 2.422832 GAGTTACCTCGTCGGTCTGATT 59.577 50.000 2.51 0.00 44.93 2.57
71 72 2.422832 AGTTACCTCGTCGGTCTGATTC 59.577 50.000 2.51 0.00 44.93 2.52
72 73 2.414994 TACCTCGTCGGTCTGATTCT 57.585 50.000 2.51 0.00 44.93 2.40
73 74 1.546961 ACCTCGTCGGTCTGATTCTT 58.453 50.000 0.00 0.00 44.93 2.52
74 75 1.473278 ACCTCGTCGGTCTGATTCTTC 59.527 52.381 0.00 0.00 44.93 2.87
75 76 1.202313 CCTCGTCGGTCTGATTCTTCC 60.202 57.143 0.00 0.00 0.00 3.46
76 77 1.472878 CTCGTCGGTCTGATTCTTCCA 59.527 52.381 0.00 0.00 0.00 3.53
77 78 2.099921 CTCGTCGGTCTGATTCTTCCAT 59.900 50.000 0.00 0.00 0.00 3.41
78 79 3.284617 TCGTCGGTCTGATTCTTCCATA 58.715 45.455 0.00 0.00 0.00 2.74
79 80 3.889538 TCGTCGGTCTGATTCTTCCATAT 59.110 43.478 0.00 0.00 0.00 1.78
80 81 4.023107 TCGTCGGTCTGATTCTTCCATATC 60.023 45.833 0.00 0.00 0.00 1.63
81 82 4.561105 GTCGGTCTGATTCTTCCATATCC 58.439 47.826 0.00 0.00 0.00 2.59
82 83 4.282195 GTCGGTCTGATTCTTCCATATCCT 59.718 45.833 0.00 0.00 0.00 3.24
83 84 4.524714 TCGGTCTGATTCTTCCATATCCTC 59.475 45.833 0.00 0.00 0.00 3.71
84 85 4.526262 CGGTCTGATTCTTCCATATCCTCT 59.474 45.833 0.00 0.00 0.00 3.69
85 86 5.712446 CGGTCTGATTCTTCCATATCCTCTA 59.288 44.000 0.00 0.00 0.00 2.43
86 87 6.379703 CGGTCTGATTCTTCCATATCCTCTAT 59.620 42.308 0.00 0.00 0.00 1.98
87 88 7.558081 CGGTCTGATTCTTCCATATCCTCTATA 59.442 40.741 0.00 0.00 0.00 1.31
88 89 9.432982 GGTCTGATTCTTCCATATCCTCTATAT 57.567 37.037 0.00 0.00 0.00 0.86
90 91 9.653516 TCTGATTCTTCCATATCCTCTATATCC 57.346 37.037 0.00 0.00 0.00 2.59
91 92 9.431690 CTGATTCTTCCATATCCTCTATATCCA 57.568 37.037 0.00 0.00 0.00 3.41
92 93 9.788815 TGATTCTTCCATATCCTCTATATCCAA 57.211 33.333 0.00 0.00 0.00 3.53
94 95 7.667575 TCTTCCATATCCTCTATATCCAAGC 57.332 40.000 0.00 0.00 0.00 4.01
95 96 6.613271 TCTTCCATATCCTCTATATCCAAGCC 59.387 42.308 0.00 0.00 0.00 4.35
96 97 4.895889 TCCATATCCTCTATATCCAAGCCG 59.104 45.833 0.00 0.00 0.00 5.52
97 98 4.039730 CCATATCCTCTATATCCAAGCCGG 59.960 50.000 0.00 0.00 0.00 6.13
98 99 1.267121 TCCTCTATATCCAAGCCGGC 58.733 55.000 21.89 21.89 33.14 6.13
99 100 0.250513 CCTCTATATCCAAGCCGGCC 59.749 60.000 26.15 5.07 33.14 6.13
100 101 1.270907 CTCTATATCCAAGCCGGCCT 58.729 55.000 26.15 7.54 33.14 5.19
101 102 1.205893 CTCTATATCCAAGCCGGCCTC 59.794 57.143 26.15 0.00 33.14 4.70
102 103 0.976641 CTATATCCAAGCCGGCCTCA 59.023 55.000 26.15 4.88 33.14 3.86
103 104 0.976641 TATATCCAAGCCGGCCTCAG 59.023 55.000 26.15 10.20 33.14 3.35
104 105 2.403132 ATATCCAAGCCGGCCTCAGC 62.403 60.000 26.15 0.22 38.76 4.26
107 108 3.130160 CAAGCCGGCCTCAGCTTC 61.130 66.667 26.15 0.00 46.11 3.86
108 109 3.640407 AAGCCGGCCTCAGCTTCA 61.640 61.111 26.15 0.00 46.11 3.02
109 110 3.909086 AAGCCGGCCTCAGCTTCAC 62.909 63.158 26.15 0.00 46.11 3.18
110 111 4.400961 GCCGGCCTCAGCTTCACT 62.401 66.667 18.11 0.00 39.73 3.41
111 112 3.019003 GCCGGCCTCAGCTTCACTA 62.019 63.158 18.11 0.00 39.73 2.74
112 113 1.153549 CCGGCCTCAGCTTCACTAC 60.154 63.158 0.00 0.00 39.73 2.73
113 114 1.591703 CGGCCTCAGCTTCACTACA 59.408 57.895 0.00 0.00 39.73 2.74
114 115 0.176680 CGGCCTCAGCTTCACTACAT 59.823 55.000 0.00 0.00 39.73 2.29
115 116 1.804372 CGGCCTCAGCTTCACTACATC 60.804 57.143 0.00 0.00 39.73 3.06
116 117 1.565305 GCCTCAGCTTCACTACATCG 58.435 55.000 0.00 0.00 35.50 3.84
117 118 1.565305 CCTCAGCTTCACTACATCGC 58.435 55.000 0.00 0.00 0.00 4.58
118 119 1.134995 CCTCAGCTTCACTACATCGCA 60.135 52.381 0.00 0.00 0.00 5.10
119 120 2.610433 CTCAGCTTCACTACATCGCAA 58.390 47.619 0.00 0.00 0.00 4.85
120 121 2.602211 CTCAGCTTCACTACATCGCAAG 59.398 50.000 0.00 0.00 0.00 4.01
121 122 2.029020 TCAGCTTCACTACATCGCAAGT 60.029 45.455 0.00 0.00 39.48 3.16
122 123 2.738846 CAGCTTCACTACATCGCAAGTT 59.261 45.455 0.00 0.00 39.48 2.66
123 124 2.738846 AGCTTCACTACATCGCAAGTTG 59.261 45.455 0.00 0.00 42.66 3.16
124 125 2.726066 GCTTCACTACATCGCAAGTTGC 60.726 50.000 18.18 18.18 40.68 4.17
125 126 1.438651 TCACTACATCGCAAGTTGCC 58.561 50.000 21.84 4.84 41.12 4.52
126 127 1.001974 TCACTACATCGCAAGTTGCCT 59.998 47.619 21.84 7.01 41.12 4.75
127 128 1.394917 CACTACATCGCAAGTTGCCTC 59.605 52.381 21.84 0.00 41.12 4.70
128 129 1.009829 CTACATCGCAAGTTGCCTCC 58.990 55.000 21.84 0.00 41.12 4.30
129 130 0.739462 TACATCGCAAGTTGCCTCCG 60.739 55.000 21.84 8.14 41.12 4.63
130 131 3.127533 ATCGCAAGTTGCCTCCGC 61.128 61.111 21.84 0.00 41.12 5.54
131 132 3.612247 ATCGCAAGTTGCCTCCGCT 62.612 57.895 21.84 0.00 41.12 5.52
132 133 4.093952 CGCAAGTTGCCTCCGCTG 62.094 66.667 21.84 2.27 41.12 5.18
133 134 2.980233 GCAAGTTGCCTCCGCTGT 60.980 61.111 17.36 0.00 37.42 4.40
134 135 2.949106 CAAGTTGCCTCCGCTGTG 59.051 61.111 0.00 0.00 35.36 3.66
135 136 1.597854 CAAGTTGCCTCCGCTGTGA 60.598 57.895 0.00 0.00 35.36 3.58
136 137 1.302033 AAGTTGCCTCCGCTGTGAG 60.302 57.895 0.00 0.00 35.36 3.51
137 138 3.426568 GTTGCCTCCGCTGTGAGC 61.427 66.667 0.00 0.00 38.02 4.26
138 139 4.704833 TTGCCTCCGCTGTGAGCC 62.705 66.667 0.00 0.00 38.18 4.70
149 150 3.755628 GTGAGCCGCCCGACAGTA 61.756 66.667 0.00 0.00 0.00 2.74
150 151 3.449227 TGAGCCGCCCGACAGTAG 61.449 66.667 0.00 0.00 0.00 2.57
151 152 3.138798 GAGCCGCCCGACAGTAGA 61.139 66.667 0.00 0.00 0.00 2.59
152 153 3.412879 GAGCCGCCCGACAGTAGAC 62.413 68.421 0.00 0.00 0.00 2.59
153 154 4.849329 GCCGCCCGACAGTAGACG 62.849 72.222 0.00 0.00 0.00 4.18
154 155 3.129502 CCGCCCGACAGTAGACGA 61.130 66.667 0.00 0.00 34.91 4.20
155 156 2.478890 CCGCCCGACAGTAGACGAT 61.479 63.158 0.00 0.00 34.91 3.73
156 157 1.298413 CGCCCGACAGTAGACGATG 60.298 63.158 0.00 0.00 34.91 3.84
157 158 1.712018 CGCCCGACAGTAGACGATGA 61.712 60.000 0.00 0.00 34.91 2.92
158 159 0.029567 GCCCGACAGTAGACGATGAG 59.970 60.000 0.00 0.00 34.91 2.90
159 160 1.380524 CCCGACAGTAGACGATGAGT 58.619 55.000 0.00 0.00 34.91 3.41
169 170 2.103143 CGATGAGTCGGCTTCGCT 59.897 61.111 0.00 0.00 44.00 4.93
170 171 1.517257 CGATGAGTCGGCTTCGCTT 60.517 57.895 0.00 0.00 44.00 4.68
171 172 1.475441 CGATGAGTCGGCTTCGCTTC 61.475 60.000 0.00 0.00 44.00 3.86
172 173 1.475441 GATGAGTCGGCTTCGCTTCG 61.475 60.000 0.00 0.00 0.00 3.79
173 174 3.546397 GAGTCGGCTTCGCTTCGC 61.546 66.667 0.00 0.00 0.00 4.70
176 177 4.451150 TCGGCTTCGCTTCGCCAT 62.451 61.111 7.61 0.00 46.62 4.40
177 178 4.228097 CGGCTTCGCTTCGCCATG 62.228 66.667 7.61 0.00 46.62 3.66
178 179 3.880846 GGCTTCGCTTCGCCATGG 61.881 66.667 7.63 7.63 45.59 3.66
179 180 2.819595 GCTTCGCTTCGCCATGGA 60.820 61.111 18.40 0.00 0.00 3.41
180 181 2.398554 GCTTCGCTTCGCCATGGAA 61.399 57.895 18.40 0.00 0.00 3.53
181 182 1.425428 CTTCGCTTCGCCATGGAAC 59.575 57.895 18.40 0.00 0.00 3.62
182 183 1.003839 TTCGCTTCGCCATGGAACT 60.004 52.632 18.40 0.00 0.00 3.01
183 184 1.019278 TTCGCTTCGCCATGGAACTC 61.019 55.000 18.40 0.00 0.00 3.01
184 185 1.448540 CGCTTCGCCATGGAACTCT 60.449 57.895 18.40 0.00 0.00 3.24
185 186 1.699656 CGCTTCGCCATGGAACTCTG 61.700 60.000 18.40 0.55 0.00 3.35
186 187 0.391661 GCTTCGCCATGGAACTCTGA 60.392 55.000 18.40 0.00 0.00 3.27
187 188 1.649664 CTTCGCCATGGAACTCTGAG 58.350 55.000 18.40 2.45 0.00 3.35
188 189 0.391661 TTCGCCATGGAACTCTGAGC 60.392 55.000 18.40 0.00 0.00 4.26
189 190 1.078918 CGCCATGGAACTCTGAGCA 60.079 57.895 18.40 0.00 0.00 4.26
190 191 1.088340 CGCCATGGAACTCTGAGCAG 61.088 60.000 18.40 0.00 0.00 4.24
191 192 0.035630 GCCATGGAACTCTGAGCAGT 60.036 55.000 18.40 0.00 0.00 4.40
192 193 1.735386 CCATGGAACTCTGAGCAGTG 58.265 55.000 5.56 0.00 0.00 3.66
193 194 1.002888 CCATGGAACTCTGAGCAGTGT 59.997 52.381 5.56 0.00 36.80 3.55
194 195 2.551721 CCATGGAACTCTGAGCAGTGTT 60.552 50.000 5.56 15.37 44.74 3.32
195 196 2.245159 TGGAACTCTGAGCAGTGTTG 57.755 50.000 19.05 2.94 42.89 3.33
213 214 2.747855 CCTCTGGGCCGTTTCTGC 60.748 66.667 0.00 0.00 0.00 4.26
219 220 3.435186 GGCCGTTTCTGCCTCTGC 61.435 66.667 0.00 0.00 45.70 4.26
220 221 3.435186 GCCGTTTCTGCCTCTGCC 61.435 66.667 0.00 0.00 36.33 4.85
221 222 3.121030 CCGTTTCTGCCTCTGCCG 61.121 66.667 0.00 0.00 36.33 5.69
222 223 2.048222 CGTTTCTGCCTCTGCCGA 60.048 61.111 0.00 0.00 36.33 5.54
223 224 2.097038 CGTTTCTGCCTCTGCCGAG 61.097 63.158 0.00 0.00 36.33 4.63
224 225 2.046892 TTTCTGCCTCTGCCGAGC 60.047 61.111 0.00 0.00 35.90 5.03
225 226 2.587247 TTTCTGCCTCTGCCGAGCT 61.587 57.895 0.00 0.00 35.90 4.09
226 227 2.793160 TTTCTGCCTCTGCCGAGCTG 62.793 60.000 0.00 0.77 35.90 4.24
229 230 3.842923 GCCTCTGCCGAGCTGCTA 61.843 66.667 0.15 0.00 35.90 3.49
230 231 2.105930 CCTCTGCCGAGCTGCTAC 59.894 66.667 0.15 0.00 35.90 3.58
231 232 2.278466 CTCTGCCGAGCTGCTACG 60.278 66.667 0.15 8.29 0.00 3.51
236 237 2.202623 CCGAGCTGCTACGGTCAC 60.203 66.667 23.40 2.99 43.53 3.67
237 238 2.202623 CGAGCTGCTACGGTCACC 60.203 66.667 0.15 0.00 0.00 4.02
238 239 2.184579 GAGCTGCTACGGTCACCC 59.815 66.667 0.15 0.00 0.00 4.61
239 240 2.603473 AGCTGCTACGGTCACCCA 60.603 61.111 0.00 0.00 0.00 4.51
240 241 2.434359 GCTGCTACGGTCACCCAC 60.434 66.667 0.00 0.00 0.00 4.61
241 242 2.264794 CTGCTACGGTCACCCACC 59.735 66.667 0.00 0.00 42.69 4.61
260 261 4.891727 CCTCCGGGCCGATTGTCG 62.892 72.222 30.79 9.73 40.07 4.35
261 262 4.143333 CTCCGGGCCGATTGTCGT 62.143 66.667 30.79 0.00 38.40 4.34
262 263 4.137872 TCCGGGCCGATTGTCGTC 62.138 66.667 30.79 0.00 38.40 4.20
269 270 3.607987 CGATTGTCGTCGGAGCGC 61.608 66.667 0.00 0.00 37.94 5.92
270 271 3.255379 GATTGTCGTCGGAGCGCC 61.255 66.667 2.29 0.00 0.00 6.53
271 272 4.814294 ATTGTCGTCGGAGCGCCC 62.814 66.667 2.29 3.94 0.00 6.13
280 281 3.119096 GGAGCGCCCTCGTTGTTC 61.119 66.667 2.29 0.00 39.06 3.18
281 282 2.357034 GAGCGCCCTCGTTGTTCA 60.357 61.111 2.29 0.00 38.14 3.18
282 283 1.959226 GAGCGCCCTCGTTGTTCAA 60.959 57.895 2.29 0.00 38.14 2.69
283 284 1.298859 GAGCGCCCTCGTTGTTCAAT 61.299 55.000 2.29 0.00 38.14 2.57
284 285 1.134694 GCGCCCTCGTTGTTCAATC 59.865 57.895 0.00 0.00 38.14 2.67
285 286 1.794222 CGCCCTCGTTGTTCAATCC 59.206 57.895 0.00 0.00 0.00 3.01
286 287 1.794222 GCCCTCGTTGTTCAATCCG 59.206 57.895 0.00 0.00 0.00 4.18
287 288 1.794222 CCCTCGTTGTTCAATCCGC 59.206 57.895 0.00 0.00 0.00 5.54
288 289 1.644786 CCCTCGTTGTTCAATCCGCC 61.645 60.000 0.00 0.00 0.00 6.13
289 290 1.644786 CCTCGTTGTTCAATCCGCCC 61.645 60.000 0.00 0.00 0.00 6.13
290 291 1.966493 CTCGTTGTTCAATCCGCCCG 61.966 60.000 0.00 0.00 0.00 6.13
291 292 2.178273 GTTGTTCAATCCGCCCGC 59.822 61.111 0.00 0.00 0.00 6.13
292 293 2.281831 TTGTTCAATCCGCCCGCA 60.282 55.556 0.00 0.00 0.00 5.69
293 294 2.622011 TTGTTCAATCCGCCCGCAC 61.622 57.895 0.00 0.00 0.00 5.34
294 295 3.053291 GTTCAATCCGCCCGCACA 61.053 61.111 0.00 0.00 0.00 4.57
295 296 2.045438 TTCAATCCGCCCGCACAT 60.045 55.556 0.00 0.00 0.00 3.21
296 297 2.112198 TTCAATCCGCCCGCACATC 61.112 57.895 0.00 0.00 0.00 3.06
297 298 2.514592 CAATCCGCCCGCACATCT 60.515 61.111 0.00 0.00 0.00 2.90
298 299 2.203070 AATCCGCCCGCACATCTC 60.203 61.111 0.00 0.00 0.00 2.75
299 300 3.757248 AATCCGCCCGCACATCTCC 62.757 63.158 0.00 0.00 0.00 3.71
304 305 4.873129 CCCGCACATCTCCGACCG 62.873 72.222 0.00 0.00 0.00 4.79
305 306 4.129737 CCGCACATCTCCGACCGT 62.130 66.667 0.00 0.00 0.00 4.83
306 307 2.880879 CGCACATCTCCGACCGTG 60.881 66.667 0.00 0.00 0.00 4.94
307 308 3.188786 GCACATCTCCGACCGTGC 61.189 66.667 0.00 0.00 46.85 5.34
308 309 2.509336 CACATCTCCGACCGTGCC 60.509 66.667 0.00 0.00 0.00 5.01
309 310 4.129737 ACATCTCCGACCGTGCCG 62.130 66.667 0.00 0.00 0.00 5.69
321 322 4.874977 GTGCCGCGAGTAGCTCCC 62.875 72.222 8.23 0.00 45.59 4.30
325 326 3.597728 CGCGAGTAGCTCCCCCTC 61.598 72.222 0.00 0.00 45.59 4.30
326 327 2.442272 GCGAGTAGCTCCCCCTCA 60.442 66.667 0.00 0.00 44.04 3.86
327 328 2.494530 GCGAGTAGCTCCCCCTCAG 61.495 68.421 0.00 0.00 44.04 3.35
328 329 1.076632 CGAGTAGCTCCCCCTCAGT 60.077 63.158 0.00 0.00 0.00 3.41
329 330 1.104577 CGAGTAGCTCCCCCTCAGTC 61.105 65.000 0.00 0.00 0.00 3.51
330 331 0.033011 GAGTAGCTCCCCCTCAGTCA 60.033 60.000 0.00 0.00 0.00 3.41
331 332 0.324830 AGTAGCTCCCCCTCAGTCAC 60.325 60.000 0.00 0.00 0.00 3.67
332 333 0.614979 GTAGCTCCCCCTCAGTCACA 60.615 60.000 0.00 0.00 0.00 3.58
333 334 0.324738 TAGCTCCCCCTCAGTCACAG 60.325 60.000 0.00 0.00 0.00 3.66
334 335 1.915769 GCTCCCCCTCAGTCACAGT 60.916 63.158 0.00 0.00 0.00 3.55
335 336 1.484444 GCTCCCCCTCAGTCACAGTT 61.484 60.000 0.00 0.00 0.00 3.16
336 337 0.322975 CTCCCCCTCAGTCACAGTTG 59.677 60.000 0.00 0.00 0.00 3.16
337 338 1.127567 TCCCCCTCAGTCACAGTTGG 61.128 60.000 0.00 0.00 0.00 3.77
338 339 1.302832 CCCCTCAGTCACAGTTGGC 60.303 63.158 0.00 0.00 0.00 4.52
339 340 1.757306 CCCTCAGTCACAGTTGGCT 59.243 57.895 0.00 0.00 38.65 4.75
340 341 0.109342 CCCTCAGTCACAGTTGGCTT 59.891 55.000 0.00 0.00 34.53 4.35
341 342 1.517242 CCTCAGTCACAGTTGGCTTC 58.483 55.000 0.00 0.00 34.53 3.86
342 343 1.202687 CCTCAGTCACAGTTGGCTTCA 60.203 52.381 0.00 0.00 34.53 3.02
343 344 1.869767 CTCAGTCACAGTTGGCTTCAC 59.130 52.381 0.00 0.00 34.53 3.18
344 345 0.583438 CAGTCACAGTTGGCTTCACG 59.417 55.000 0.00 0.00 34.53 4.35
345 346 0.532862 AGTCACAGTTGGCTTCACGG 60.533 55.000 0.00 0.00 31.86 4.94
346 347 1.891919 TCACAGTTGGCTTCACGGC 60.892 57.895 0.00 0.00 38.97 5.68
347 348 1.893808 CACAGTTGGCTTCACGGCT 60.894 57.895 0.00 0.00 39.32 5.52
348 349 1.152963 ACAGTTGGCTTCACGGCTT 60.153 52.632 0.00 0.00 39.32 4.35
349 350 1.166531 ACAGTTGGCTTCACGGCTTC 61.167 55.000 0.00 0.00 39.32 3.86
350 351 1.148273 AGTTGGCTTCACGGCTTCA 59.852 52.632 0.00 0.00 39.32 3.02
351 352 0.250901 AGTTGGCTTCACGGCTTCAT 60.251 50.000 0.00 0.00 39.32 2.57
352 353 0.169009 GTTGGCTTCACGGCTTCATC 59.831 55.000 0.00 0.00 39.32 2.92
353 354 0.036732 TTGGCTTCACGGCTTCATCT 59.963 50.000 0.00 0.00 39.32 2.90
354 355 0.391661 TGGCTTCACGGCTTCATCTC 60.392 55.000 0.00 0.00 39.32 2.75
355 356 0.107945 GGCTTCACGGCTTCATCTCT 60.108 55.000 0.00 0.00 34.85 3.10
356 357 1.677217 GGCTTCACGGCTTCATCTCTT 60.677 52.381 0.00 0.00 34.85 2.85
357 358 1.663135 GCTTCACGGCTTCATCTCTTC 59.337 52.381 0.00 0.00 0.00 2.87
358 359 1.923204 CTTCACGGCTTCATCTCTTCG 59.077 52.381 0.00 0.00 0.00 3.79
359 360 0.458543 TCACGGCTTCATCTCTTCGC 60.459 55.000 0.00 0.00 0.00 4.70
360 361 1.153549 ACGGCTTCATCTCTTCGCC 60.154 57.895 0.00 0.00 37.40 5.54
361 362 1.884926 CGGCTTCATCTCTTCGCCC 60.885 63.158 0.00 0.00 37.47 6.13
362 363 1.524482 GGCTTCATCTCTTCGCCCT 59.476 57.895 0.00 0.00 34.75 5.19
363 364 0.813210 GGCTTCATCTCTTCGCCCTG 60.813 60.000 0.00 0.00 34.75 4.45
364 365 1.435408 GCTTCATCTCTTCGCCCTGC 61.435 60.000 0.00 0.00 0.00 4.85
395 396 3.330853 CCGCGGCTATGCTTCGTC 61.331 66.667 14.67 0.00 0.00 4.20
396 397 3.682315 CGCGGCTATGCTTCGTCG 61.682 66.667 0.00 0.00 0.00 5.12
397 398 3.330853 GCGGCTATGCTTCGTCGG 61.331 66.667 0.48 0.00 0.00 4.79
398 399 3.330853 CGGCTATGCTTCGTCGGC 61.331 66.667 0.00 0.00 0.00 5.54
399 400 2.107141 GGCTATGCTTCGTCGGCT 59.893 61.111 0.00 0.00 0.00 5.52
400 401 1.951631 GGCTATGCTTCGTCGGCTC 60.952 63.158 0.00 0.00 0.00 4.70
401 402 1.226974 GCTATGCTTCGTCGGCTCA 60.227 57.895 0.00 0.00 0.00 4.26
402 403 1.483424 GCTATGCTTCGTCGGCTCAC 61.483 60.000 0.00 0.00 0.00 3.51
403 404 0.101399 CTATGCTTCGTCGGCTCACT 59.899 55.000 0.00 0.00 0.00 3.41
404 405 1.333931 CTATGCTTCGTCGGCTCACTA 59.666 52.381 0.00 0.00 0.00 2.74
405 406 0.179134 ATGCTTCGTCGGCTCACTAC 60.179 55.000 0.00 0.00 0.00 2.73
406 407 1.241990 TGCTTCGTCGGCTCACTACT 61.242 55.000 0.00 0.00 0.00 2.57
407 408 0.798771 GCTTCGTCGGCTCACTACTG 60.799 60.000 0.00 0.00 0.00 2.74
408 409 0.522180 CTTCGTCGGCTCACTACTGT 59.478 55.000 0.00 0.00 0.00 3.55
409 410 0.956633 TTCGTCGGCTCACTACTGTT 59.043 50.000 0.00 0.00 0.00 3.16
410 411 1.812235 TCGTCGGCTCACTACTGTTA 58.188 50.000 0.00 0.00 0.00 2.41
411 412 1.466167 TCGTCGGCTCACTACTGTTAC 59.534 52.381 0.00 0.00 0.00 2.50
412 413 1.198408 CGTCGGCTCACTACTGTTACA 59.802 52.381 0.00 0.00 0.00 2.41
413 414 2.728225 CGTCGGCTCACTACTGTTACAG 60.728 54.545 11.21 11.21 37.52 2.74
414 415 1.201647 TCGGCTCACTACTGTTACAGC 59.798 52.381 12.80 0.00 34.37 4.40
415 416 1.202582 CGGCTCACTACTGTTACAGCT 59.797 52.381 12.80 2.68 34.37 4.24
416 417 2.352814 CGGCTCACTACTGTTACAGCTT 60.353 50.000 12.80 0.00 34.37 3.74
417 418 3.254892 GGCTCACTACTGTTACAGCTTC 58.745 50.000 12.80 0.00 34.37 3.86
418 419 2.917971 GCTCACTACTGTTACAGCTTCG 59.082 50.000 12.80 1.10 34.37 3.79
419 420 2.917971 CTCACTACTGTTACAGCTTCGC 59.082 50.000 12.80 0.00 34.37 4.70
420 421 1.993370 CACTACTGTTACAGCTTCGCC 59.007 52.381 12.80 0.00 34.37 5.54
421 422 1.067071 ACTACTGTTACAGCTTCGCCC 60.067 52.381 12.80 0.00 34.37 6.13
422 423 0.108992 TACTGTTACAGCTTCGCCCG 60.109 55.000 12.80 0.00 34.37 6.13
423 424 2.047655 TGTTACAGCTTCGCCCGG 60.048 61.111 0.00 0.00 0.00 5.73
424 425 2.047560 GTTACAGCTTCGCCCGGT 60.048 61.111 0.00 0.00 0.00 5.28
425 426 2.047655 TTACAGCTTCGCCCGGTG 60.048 61.111 0.00 0.00 36.06 4.94
426 427 4.752879 TACAGCTTCGCCCGGTGC 62.753 66.667 0.00 2.24 33.41 5.01
431 432 4.394712 CTTCGCCCGGTGCCTCTT 62.395 66.667 0.00 0.00 36.24 2.85
432 433 3.901797 CTTCGCCCGGTGCCTCTTT 62.902 63.158 0.00 0.00 36.24 2.52
433 434 4.697756 TCGCCCGGTGCCTCTTTG 62.698 66.667 0.00 0.00 36.24 2.77
440 441 4.090057 GTGCCTCTTTGCCGCGAC 62.090 66.667 8.23 0.00 0.00 5.19
443 444 3.423154 CCTCTTTGCCGCGACCAC 61.423 66.667 8.23 0.00 0.00 4.16
444 445 3.423154 CTCTTTGCCGCGACCACC 61.423 66.667 8.23 0.00 0.00 4.61
445 446 3.883744 CTCTTTGCCGCGACCACCT 62.884 63.158 8.23 0.00 0.00 4.00
446 447 3.423154 CTTTGCCGCGACCACCTC 61.423 66.667 8.23 0.00 0.00 3.85
447 448 4.243008 TTTGCCGCGACCACCTCA 62.243 61.111 8.23 0.00 0.00 3.86
448 449 4.680237 TTGCCGCGACCACCTCAG 62.680 66.667 8.23 0.00 0.00 3.35
454 455 4.767255 CGACCACCTCAGCAGGCC 62.767 72.222 0.00 0.00 45.05 5.19
455 456 3.640407 GACCACCTCAGCAGGCCA 61.640 66.667 5.01 0.00 45.05 5.36
456 457 3.177884 ACCACCTCAGCAGGCCAA 61.178 61.111 5.01 0.00 45.05 4.52
457 458 2.674380 CCACCTCAGCAGGCCAAC 60.674 66.667 5.01 0.00 45.05 3.77
458 459 2.433446 CACCTCAGCAGGCCAACT 59.567 61.111 5.01 0.00 45.05 3.16
459 460 1.673665 CACCTCAGCAGGCCAACTC 60.674 63.158 5.01 0.00 45.05 3.01
460 461 2.045536 CCTCAGCAGGCCAACTCC 60.046 66.667 5.01 0.00 30.98 3.85
461 462 2.752358 CTCAGCAGGCCAACTCCA 59.248 61.111 5.01 0.00 0.00 3.86
462 463 1.673665 CTCAGCAGGCCAACTCCAC 60.674 63.158 5.01 0.00 0.00 4.02
463 464 2.674380 CAGCAGGCCAACTCCACC 60.674 66.667 5.01 0.00 0.00 4.61
464 465 2.856000 AGCAGGCCAACTCCACCT 60.856 61.111 5.01 0.00 0.00 4.00
465 466 2.360475 GCAGGCCAACTCCACCTC 60.360 66.667 5.01 0.00 0.00 3.85
466 467 2.900106 GCAGGCCAACTCCACCTCT 61.900 63.158 5.01 0.00 0.00 3.69
467 468 1.553690 GCAGGCCAACTCCACCTCTA 61.554 60.000 5.01 0.00 0.00 2.43
468 469 0.250513 CAGGCCAACTCCACCTCTAC 59.749 60.000 5.01 0.00 0.00 2.59
469 470 0.910088 AGGCCAACTCCACCTCTACC 60.910 60.000 5.01 0.00 0.00 3.18
470 471 1.602771 GCCAACTCCACCTCTACCC 59.397 63.158 0.00 0.00 0.00 3.69
471 472 1.911702 GCCAACTCCACCTCTACCCC 61.912 65.000 0.00 0.00 0.00 4.95
472 473 1.614241 CCAACTCCACCTCTACCCCG 61.614 65.000 0.00 0.00 0.00 5.73
473 474 0.903454 CAACTCCACCTCTACCCCGT 60.903 60.000 0.00 0.00 0.00 5.28
474 475 0.614134 AACTCCACCTCTACCCCGTC 60.614 60.000 0.00 0.00 0.00 4.79
475 476 1.757340 CTCCACCTCTACCCCGTCC 60.757 68.421 0.00 0.00 0.00 4.79
476 477 3.145551 CCACCTCTACCCCGTCCG 61.146 72.222 0.00 0.00 0.00 4.79
477 478 3.834799 CACCTCTACCCCGTCCGC 61.835 72.222 0.00 0.00 0.00 5.54
595 601 2.351726 GGCACGATCGTCTTTTTATGCT 59.648 45.455 19.84 0.00 32.44 3.79
633 639 2.911143 CCCTGTAGAAGCCCGCAT 59.089 61.111 0.00 0.00 0.00 4.73
634 640 1.224592 CCCTGTAGAAGCCCGCATT 59.775 57.895 0.00 0.00 0.00 3.56
738 744 2.886862 TCGTTTTCCCTTGTCACGTA 57.113 45.000 0.00 0.00 32.65 3.57
747 753 1.007038 TTGTCACGTACTGCGGTCC 60.007 57.895 0.00 0.00 46.52 4.46
932 939 2.442272 CCCCCTCGTCTCCATCGT 60.442 66.667 0.00 0.00 0.00 3.73
938 945 3.518998 CGTCTCCATCGTCCCGCT 61.519 66.667 0.00 0.00 0.00 5.52
1142 1149 3.461773 CGCTGGATCGGTCCCTGT 61.462 66.667 13.41 0.00 44.41 4.00
1329 1336 8.017418 AGCAGATAAGCAGAAGATTTAGTAGT 57.983 34.615 0.00 0.00 36.85 2.73
1425 1435 3.913799 TGAACCCCATTTCAGAGTTAGGA 59.086 43.478 0.00 0.00 31.68 2.94
1517 1528 3.704908 GATTGCCGCATGTGCCCAC 62.705 63.158 0.00 0.00 37.91 4.61
2240 2591 2.420687 GGTCAATGAGGAAGGTGCTAGG 60.421 54.545 0.00 0.00 0.00 3.02
2367 2718 2.649516 ACGTTGTTTGTTGATGATGCG 58.350 42.857 0.00 0.00 0.00 4.73
2689 3040 8.877864 AAATGAACTATTCAGGTATTTGTCCA 57.122 30.769 0.00 0.00 43.98 4.02
2690 3041 9.479549 AAATGAACTATTCAGGTATTTGTCCAT 57.520 29.630 0.00 0.00 43.98 3.41
2691 3042 9.479549 AATGAACTATTCAGGTATTTGTCCATT 57.520 29.630 0.00 0.00 43.98 3.16
2693 3044 9.967451 TGAACTATTCAGGTATTTGTCCATTAA 57.033 29.630 0.00 0.00 34.08 1.40
2727 3078 8.587952 AAATGGAACTATTTAGTTGTTTGTGC 57.412 30.769 7.68 0.00 45.84 4.57
2728 3079 6.701145 TGGAACTATTTAGTTGTTTGTGCA 57.299 33.333 7.68 0.00 45.84 4.57
2729 3080 7.283625 TGGAACTATTTAGTTGTTTGTGCAT 57.716 32.000 7.68 0.00 45.84 3.96
2730 3081 7.721402 TGGAACTATTTAGTTGTTTGTGCATT 58.279 30.769 7.68 0.00 45.84 3.56
2731 3082 8.851145 TGGAACTATTTAGTTGTTTGTGCATTA 58.149 29.630 7.68 0.00 45.84 1.90
2732 3083 9.685828 GGAACTATTTAGTTGTTTGTGCATTAA 57.314 29.630 7.68 0.00 45.84 1.40
2737 3088 8.742554 ATTTAGTTGTTTGTGCATTAAGTAGC 57.257 30.769 0.00 0.00 0.00 3.58
2738 3089 7.504924 TTAGTTGTTTGTGCATTAAGTAGCT 57.495 32.000 0.00 0.00 0.00 3.32
2739 3090 5.762045 AGTTGTTTGTGCATTAAGTAGCTG 58.238 37.500 0.00 0.00 0.00 4.24
2742 3093 6.869315 TGTTTGTGCATTAAGTAGCTGTAA 57.131 33.333 0.00 0.00 0.00 2.41
2744 3095 7.881142 TGTTTGTGCATTAAGTAGCTGTAAAT 58.119 30.769 0.00 0.00 0.00 1.40
2745 3096 7.807433 TGTTTGTGCATTAAGTAGCTGTAAATG 59.193 33.333 0.00 2.60 0.00 2.32
2746 3097 6.435430 TGTGCATTAAGTAGCTGTAAATGG 57.565 37.500 0.00 0.00 0.00 3.16
2748 3099 5.588648 GTGCATTAAGTAGCTGTAAATGGGA 59.411 40.000 0.00 0.00 0.00 4.37
2749 3100 6.263168 GTGCATTAAGTAGCTGTAAATGGGAT 59.737 38.462 0.00 0.00 0.00 3.85
2752 3103 9.014297 GCATTAAGTAGCTGTAAATGGGATATT 57.986 33.333 0.00 0.00 0.00 1.28
2761 3112 9.200817 AGCTGTAAATGGGATATTATGTTTGTT 57.799 29.630 0.00 0.00 0.00 2.83
2787 3138 8.800370 TGTTCATTACATTCTAGTAAATGGCA 57.200 30.769 8.55 0.00 40.28 4.92
2788 3139 9.237187 TGTTCATTACATTCTAGTAAATGGCAA 57.763 29.630 8.55 3.67 40.28 4.52
2805 3156 5.859521 TGGCAATTATTTGATGTTTGTGC 57.140 34.783 1.55 0.00 34.60 4.57
2806 3157 5.303165 TGGCAATTATTTGATGTTTGTGCA 58.697 33.333 1.55 0.00 34.60 4.57
2807 3158 5.938710 TGGCAATTATTTGATGTTTGTGCAT 59.061 32.000 1.55 0.00 34.60 3.96
2808 3159 6.430308 TGGCAATTATTTGATGTTTGTGCATT 59.570 30.769 1.55 0.00 34.60 3.56
2809 3160 7.605309 TGGCAATTATTTGATGTTTGTGCATTA 59.395 29.630 1.55 0.00 34.60 1.90
2810 3161 7.904461 GGCAATTATTTGATGTTTGTGCATTAC 59.096 33.333 1.55 0.00 34.60 1.89
2811 3162 8.658609 GCAATTATTTGATGTTTGTGCATTACT 58.341 29.630 1.55 0.00 34.60 2.24
2815 3166 7.816945 ATTTGATGTTTGTGCATTACTTAGC 57.183 32.000 0.00 0.00 0.00 3.09
2816 3167 6.573664 TTGATGTTTGTGCATTACTTAGCT 57.426 33.333 0.00 0.00 0.00 3.32
2817 3168 5.941733 TGATGTTTGTGCATTACTTAGCTG 58.058 37.500 0.00 0.00 0.00 4.24
2819 3170 6.652900 TGATGTTTGTGCATTACTTAGCTGTA 59.347 34.615 0.00 0.00 0.00 2.74
2820 3171 6.869315 TGTTTGTGCATTACTTAGCTGTAA 57.131 33.333 0.00 0.00 36.92 2.41
2822 3173 7.881142 TGTTTGTGCATTACTTAGCTGTAAAT 58.119 30.769 0.00 0.00 36.22 1.40
2823 3174 7.807433 TGTTTGTGCATTACTTAGCTGTAAATG 59.193 33.333 0.00 2.60 36.22 2.32
2824 3175 6.435430 TGTGCATTACTTAGCTGTAAATGG 57.565 37.500 0.00 0.00 36.22 3.16
2826 3177 5.588648 GTGCATTACTTAGCTGTAAATGGGA 59.411 40.000 0.00 0.00 36.22 4.37
2827 3178 6.263168 GTGCATTACTTAGCTGTAAATGGGAT 59.737 38.462 0.00 0.00 36.22 3.85
2830 3181 8.454106 GCATTACTTAGCTGTAAATGGGATATG 58.546 37.037 0.00 0.00 36.22 1.78
2835 3186 5.372343 AGCTGTAAATGGGATATGTGTGA 57.628 39.130 0.00 0.00 0.00 3.58
2836 3187 5.945310 AGCTGTAAATGGGATATGTGTGAT 58.055 37.500 0.00 0.00 0.00 3.06
2837 3188 5.766670 AGCTGTAAATGGGATATGTGTGATG 59.233 40.000 0.00 0.00 0.00 3.07
2839 3190 6.039717 GCTGTAAATGGGATATGTGTGATGTT 59.960 38.462 0.00 0.00 0.00 2.71
2947 3298 6.480524 TGTTTGTGCATTAAGTAGCTGTAG 57.519 37.500 0.00 0.00 0.00 2.74
2983 3334 8.592105 ATGTTTGTTTGTTCATTACATTCCAG 57.408 30.769 0.00 0.00 36.44 3.86
2984 3335 7.551585 TGTTTGTTTGTTCATTACATTCCAGT 58.448 30.769 0.00 0.00 36.44 4.00
2985 3336 8.687242 TGTTTGTTTGTTCATTACATTCCAGTA 58.313 29.630 0.00 0.00 36.44 2.74
2986 3337 9.522804 GTTTGTTTGTTCATTACATTCCAGTAA 57.477 29.630 0.00 0.00 36.44 2.24
2989 3340 9.689976 TGTTTGTTCATTACATTCCAGTAAATG 57.310 29.630 0.00 0.00 41.46 2.32
2990 3341 9.139174 GTTTGTTCATTACATTCCAGTAAATGG 57.861 33.333 2.11 0.00 43.04 3.16
2991 3342 7.319646 TTGTTCATTACATTCCAGTAAATGGC 58.680 34.615 2.11 0.00 42.10 4.40
2992 3343 7.039434 TTGTTCATTACATTCCAGTAAATGGCA 60.039 33.333 0.00 0.00 42.10 4.92
3877 4240 1.335872 GCTTGGTAATGGTGTGTGCAC 60.336 52.381 10.75 10.75 44.53 4.57
3885 4248 0.322906 TGGTGTGTGCACAGAACCAA 60.323 50.000 35.58 24.70 46.95 3.67
4044 4410 8.388484 AGTTAGCATGATTGAATATTCCACTC 57.612 34.615 12.90 7.37 0.00 3.51
4210 4576 9.358406 AGTGAGCATGATTGAATATTCCATTTA 57.642 29.630 12.90 2.21 0.00 1.40
4406 4773 1.970640 AGTGGAAATTTTGGAGGTGGC 59.029 47.619 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.202440 CGCATGTCATGGGGGAATTTG 60.202 52.381 19.53 0.00 39.31 2.32
1 2 1.113788 CGCATGTCATGGGGGAATTT 58.886 50.000 19.53 0.00 39.31 1.82
10 11 3.945434 GAGGGCGCGCATGTCATG 61.945 66.667 34.42 8.56 0.00 3.07
11 12 4.166888 AGAGGGCGCGCATGTCAT 62.167 61.111 34.42 13.40 0.00 3.06
24 25 3.672295 GAGCAACCCGGAGCAGAGG 62.672 68.421 0.73 0.00 0.00 3.69
25 26 1.323271 TAGAGCAACCCGGAGCAGAG 61.323 60.000 0.73 0.00 0.00 3.35
26 27 0.902984 TTAGAGCAACCCGGAGCAGA 60.903 55.000 0.73 0.00 0.00 4.26
27 28 0.460987 CTTAGAGCAACCCGGAGCAG 60.461 60.000 0.73 0.00 0.00 4.24
30 31 0.460987 CAGCTTAGAGCAACCCGGAG 60.461 60.000 0.73 0.00 45.56 4.63
31 32 0.902984 TCAGCTTAGAGCAACCCGGA 60.903 55.000 0.73 0.00 45.56 5.14
32 33 0.460987 CTCAGCTTAGAGCAACCCGG 60.461 60.000 0.00 0.00 45.56 5.73
33 34 0.247736 ACTCAGCTTAGAGCAACCCG 59.752 55.000 0.90 0.00 45.56 5.28
35 36 3.263261 GGTAACTCAGCTTAGAGCAACC 58.737 50.000 0.90 5.89 45.56 3.77
56 57 1.472878 TGGAAGAATCAGACCGACGAG 59.527 52.381 0.00 0.00 0.00 4.18
57 58 1.541379 TGGAAGAATCAGACCGACGA 58.459 50.000 0.00 0.00 0.00 4.20
58 59 2.586258 ATGGAAGAATCAGACCGACG 57.414 50.000 0.00 0.00 0.00 5.12
59 60 4.282195 AGGATATGGAAGAATCAGACCGAC 59.718 45.833 0.00 0.00 0.00 4.79
60 61 4.483950 AGGATATGGAAGAATCAGACCGA 58.516 43.478 0.00 0.00 0.00 4.69
61 62 4.526262 AGAGGATATGGAAGAATCAGACCG 59.474 45.833 0.00 0.00 0.00 4.79
62 63 7.732222 ATAGAGGATATGGAAGAATCAGACC 57.268 40.000 0.00 0.00 0.00 3.85
64 65 9.653516 GGATATAGAGGATATGGAAGAATCAGA 57.346 37.037 0.00 0.00 30.34 3.27
65 66 9.431690 TGGATATAGAGGATATGGAAGAATCAG 57.568 37.037 0.00 0.00 30.34 2.90
66 67 9.788815 TTGGATATAGAGGATATGGAAGAATCA 57.211 33.333 0.00 0.00 30.34 2.57
68 69 8.713036 GCTTGGATATAGAGGATATGGAAGAAT 58.287 37.037 0.00 0.00 30.34 2.40
69 70 7.126421 GGCTTGGATATAGAGGATATGGAAGAA 59.874 40.741 0.00 0.00 30.34 2.52
70 71 6.613271 GGCTTGGATATAGAGGATATGGAAGA 59.387 42.308 0.00 0.00 30.34 2.87
71 72 6.462207 CGGCTTGGATATAGAGGATATGGAAG 60.462 46.154 0.00 0.00 30.34 3.46
72 73 5.363868 CGGCTTGGATATAGAGGATATGGAA 59.636 44.000 0.00 0.00 30.34 3.53
73 74 4.895889 CGGCTTGGATATAGAGGATATGGA 59.104 45.833 0.00 0.00 30.34 3.41
74 75 4.039730 CCGGCTTGGATATAGAGGATATGG 59.960 50.000 0.00 0.00 42.00 2.74
75 76 4.502259 GCCGGCTTGGATATAGAGGATATG 60.502 50.000 22.15 0.00 42.00 1.78
76 77 3.643792 GCCGGCTTGGATATAGAGGATAT 59.356 47.826 22.15 0.00 42.00 1.63
77 78 3.031736 GCCGGCTTGGATATAGAGGATA 58.968 50.000 22.15 0.00 42.00 2.59
78 79 1.834263 GCCGGCTTGGATATAGAGGAT 59.166 52.381 22.15 0.00 42.00 3.24
79 80 1.267121 GCCGGCTTGGATATAGAGGA 58.733 55.000 22.15 0.00 42.00 3.71
80 81 0.250513 GGCCGGCTTGGATATAGAGG 59.749 60.000 28.56 0.00 42.00 3.69
81 82 1.205893 GAGGCCGGCTTGGATATAGAG 59.794 57.143 28.56 0.00 42.00 2.43
82 83 1.267121 GAGGCCGGCTTGGATATAGA 58.733 55.000 28.56 0.00 42.00 1.98
83 84 0.976641 TGAGGCCGGCTTGGATATAG 59.023 55.000 28.56 0.00 42.00 1.31
84 85 0.976641 CTGAGGCCGGCTTGGATATA 59.023 55.000 28.56 3.54 42.00 0.86
85 86 1.757306 CTGAGGCCGGCTTGGATAT 59.243 57.895 28.56 3.45 42.00 1.63
86 87 3.106986 GCTGAGGCCGGCTTGGATA 62.107 63.158 28.56 6.30 42.00 2.59
87 88 4.496336 GCTGAGGCCGGCTTGGAT 62.496 66.667 28.56 7.41 42.00 3.41
93 94 3.019003 TAGTGAAGCTGAGGCCGGC 62.019 63.158 21.18 21.18 44.96 6.13
94 95 1.153549 GTAGTGAAGCTGAGGCCGG 60.154 63.158 0.00 0.00 39.73 6.13
95 96 0.176680 ATGTAGTGAAGCTGAGGCCG 59.823 55.000 0.00 0.00 39.73 6.13
96 97 1.804372 CGATGTAGTGAAGCTGAGGCC 60.804 57.143 0.00 0.00 39.73 5.19
97 98 1.565305 CGATGTAGTGAAGCTGAGGC 58.435 55.000 0.00 0.00 39.06 4.70
98 99 1.134995 TGCGATGTAGTGAAGCTGAGG 60.135 52.381 0.00 0.00 0.00 3.86
99 100 2.284263 TGCGATGTAGTGAAGCTGAG 57.716 50.000 0.00 0.00 0.00 3.35
100 101 2.029020 ACTTGCGATGTAGTGAAGCTGA 60.029 45.455 0.00 0.00 0.00 4.26
101 102 2.341257 ACTTGCGATGTAGTGAAGCTG 58.659 47.619 0.00 0.00 0.00 4.24
102 103 2.738846 CAACTTGCGATGTAGTGAAGCT 59.261 45.455 0.00 0.00 0.00 3.74
103 104 2.726066 GCAACTTGCGATGTAGTGAAGC 60.726 50.000 0.00 0.00 31.71 3.86
104 105 2.159653 GGCAACTTGCGATGTAGTGAAG 60.160 50.000 7.67 0.00 46.21 3.02
105 106 1.804151 GGCAACTTGCGATGTAGTGAA 59.196 47.619 7.67 0.00 46.21 3.18
106 107 1.438651 GGCAACTTGCGATGTAGTGA 58.561 50.000 7.67 0.00 46.21 3.41
107 108 3.975992 GGCAACTTGCGATGTAGTG 57.024 52.632 7.67 0.00 46.21 2.74
120 121 3.426568 GCTCACAGCGGAGGCAAC 61.427 66.667 0.00 0.00 43.41 4.17
132 133 3.701604 CTACTGTCGGGCGGCTCAC 62.702 68.421 9.56 6.41 0.00 3.51
133 134 3.449227 CTACTGTCGGGCGGCTCA 61.449 66.667 9.56 5.44 0.00 4.26
134 135 3.138798 TCTACTGTCGGGCGGCTC 61.139 66.667 9.56 0.00 0.00 4.70
135 136 3.450115 GTCTACTGTCGGGCGGCT 61.450 66.667 9.56 0.00 0.00 5.52
136 137 4.849329 CGTCTACTGTCGGGCGGC 62.849 72.222 0.00 0.00 0.00 6.53
137 138 2.478890 ATCGTCTACTGTCGGGCGG 61.479 63.158 7.59 0.00 0.00 6.13
138 139 1.298413 CATCGTCTACTGTCGGGCG 60.298 63.158 2.13 2.13 0.00 6.13
139 140 0.029567 CTCATCGTCTACTGTCGGGC 59.970 60.000 0.00 0.00 0.00 6.13
140 141 1.331138 GACTCATCGTCTACTGTCGGG 59.669 57.143 0.00 0.00 39.61 5.14
141 142 1.004821 CGACTCATCGTCTACTGTCGG 60.005 57.143 0.00 0.00 43.66 4.79
142 143 2.354821 CGACTCATCGTCTACTGTCG 57.645 55.000 0.00 0.00 43.66 4.35
168 169 1.649664 CTCAGAGTTCCATGGCGAAG 58.350 55.000 6.96 0.00 0.00 3.79
169 170 0.391661 GCTCAGAGTTCCATGGCGAA 60.392 55.000 6.96 0.00 0.00 4.70
170 171 1.219124 GCTCAGAGTTCCATGGCGA 59.781 57.895 6.96 0.00 0.00 5.54
171 172 1.078918 TGCTCAGAGTTCCATGGCG 60.079 57.895 6.96 0.00 0.00 5.69
172 173 0.035630 ACTGCTCAGAGTTCCATGGC 60.036 55.000 6.96 0.00 0.00 4.40
173 174 1.002888 ACACTGCTCAGAGTTCCATGG 59.997 52.381 4.97 4.97 0.00 3.66
174 175 2.469274 ACACTGCTCAGAGTTCCATG 57.531 50.000 3.60 0.00 0.00 3.66
175 176 2.775890 CAACACTGCTCAGAGTTCCAT 58.224 47.619 9.23 0.00 39.59 3.41
176 177 1.811558 GCAACACTGCTCAGAGTTCCA 60.812 52.381 9.23 0.00 45.74 3.53
177 178 0.871057 GCAACACTGCTCAGAGTTCC 59.129 55.000 9.23 0.00 45.74 3.62
196 197 2.747855 GCAGAAACGGCCCAGAGG 60.748 66.667 0.00 0.00 0.00 3.69
197 198 2.747855 GGCAGAAACGGCCCAGAG 60.748 66.667 0.00 0.00 45.87 3.35
203 204 3.435186 GGCAGAGGCAGAAACGGC 61.435 66.667 0.00 0.00 43.71 5.68
204 205 3.121030 CGGCAGAGGCAGAAACGG 61.121 66.667 0.00 0.00 43.71 4.44
205 206 2.048222 TCGGCAGAGGCAGAAACG 60.048 61.111 0.00 0.00 41.34 3.60
206 207 2.394563 GCTCGGCAGAGGCAGAAAC 61.395 63.158 15.89 0.00 43.63 2.78
207 208 2.046892 GCTCGGCAGAGGCAGAAA 60.047 61.111 15.89 0.00 43.63 2.52
208 209 2.999648 AGCTCGGCAGAGGCAGAA 61.000 61.111 15.89 0.00 43.63 3.02
209 210 3.767806 CAGCTCGGCAGAGGCAGA 61.768 66.667 15.89 0.00 44.51 4.26
212 213 3.842923 TAGCAGCTCGGCAGAGGC 61.843 66.667 15.89 11.07 44.51 4.70
213 214 2.105930 GTAGCAGCTCGGCAGAGG 59.894 66.667 15.89 0.91 44.51 3.69
215 216 3.826754 CCGTAGCAGCTCGGCAGA 61.827 66.667 16.98 0.00 40.28 4.26
220 221 2.202623 GGTGACCGTAGCAGCTCG 60.203 66.667 0.00 2.43 0.00 5.03
221 222 2.184579 GGGTGACCGTAGCAGCTC 59.815 66.667 0.00 0.00 43.64 4.09
243 244 4.891727 CGACAATCGGCCCGGAGG 62.892 72.222 0.73 0.00 41.95 4.30
244 245 4.143333 ACGACAATCGGCCCGGAG 62.143 66.667 0.73 0.00 45.59 4.63
245 246 4.137872 GACGACAATCGGCCCGGA 62.138 66.667 0.73 0.00 43.36 5.14
252 253 3.607987 GCGCTCCGACGACAATCG 61.608 66.667 0.00 0.00 46.93 3.34
253 254 3.255379 GGCGCTCCGACGACAATC 61.255 66.667 7.64 0.00 42.03 2.67
254 255 4.814294 GGGCGCTCCGACGACAAT 62.814 66.667 7.64 0.00 45.15 2.71
263 264 3.119096 GAACAACGAGGGCGCTCC 61.119 66.667 23.61 4.98 42.48 4.70
264 265 1.298859 ATTGAACAACGAGGGCGCTC 61.299 55.000 20.29 20.29 42.48 5.03
265 266 1.298859 GATTGAACAACGAGGGCGCT 61.299 55.000 7.64 1.38 42.48 5.92
266 267 1.134694 GATTGAACAACGAGGGCGC 59.865 57.895 0.00 0.00 42.48 6.53
267 268 1.794222 GGATTGAACAACGAGGGCG 59.206 57.895 0.00 0.00 44.79 6.13
268 269 1.794222 CGGATTGAACAACGAGGGC 59.206 57.895 0.00 0.00 0.00 5.19
269 270 1.644786 GGCGGATTGAACAACGAGGG 61.645 60.000 0.00 0.00 0.00 4.30
270 271 1.644786 GGGCGGATTGAACAACGAGG 61.645 60.000 0.00 0.00 0.00 4.63
271 272 1.794222 GGGCGGATTGAACAACGAG 59.206 57.895 0.00 0.00 0.00 4.18
272 273 2.030401 CGGGCGGATTGAACAACGA 61.030 57.895 0.00 0.00 0.00 3.85
273 274 2.478746 CGGGCGGATTGAACAACG 59.521 61.111 0.00 0.00 0.00 4.10
274 275 2.178273 GCGGGCGGATTGAACAAC 59.822 61.111 0.00 0.00 0.00 3.32
275 276 2.281831 TGCGGGCGGATTGAACAA 60.282 55.556 0.00 0.00 0.00 2.83
276 277 3.053291 GTGCGGGCGGATTGAACA 61.053 61.111 0.00 0.00 0.00 3.18
277 278 2.322999 GATGTGCGGGCGGATTGAAC 62.323 60.000 0.00 0.00 0.00 3.18
278 279 2.045438 ATGTGCGGGCGGATTGAA 60.045 55.556 0.00 0.00 0.00 2.69
279 280 2.513666 GATGTGCGGGCGGATTGA 60.514 61.111 0.00 0.00 0.00 2.57
280 281 2.514592 AGATGTGCGGGCGGATTG 60.515 61.111 0.00 0.00 0.00 2.67
281 282 2.203070 GAGATGTGCGGGCGGATT 60.203 61.111 0.00 0.00 0.00 3.01
282 283 4.241555 GGAGATGTGCGGGCGGAT 62.242 66.667 0.00 0.00 0.00 4.18
287 288 4.873129 CGGTCGGAGATGTGCGGG 62.873 72.222 3.47 0.00 40.67 6.13
288 289 4.129737 ACGGTCGGAGATGTGCGG 62.130 66.667 3.47 0.00 40.67 5.69
289 290 2.880879 CACGGTCGGAGATGTGCG 60.881 66.667 0.00 0.00 40.67 5.34
291 292 2.509336 GGCACGGTCGGAGATGTG 60.509 66.667 0.00 1.11 44.75 3.21
304 305 4.874977 GGGAGCTACTCGCGGCAC 62.875 72.222 6.13 0.00 45.59 5.01
308 309 3.597728 GAGGGGGAGCTACTCGCG 61.598 72.222 0.00 0.00 43.09 5.87
309 310 2.442272 TGAGGGGGAGCTACTCGC 60.442 66.667 0.00 3.24 41.74 5.03
310 311 1.076632 ACTGAGGGGGAGCTACTCG 60.077 63.158 0.00 0.00 34.03 4.18
311 312 0.033011 TGACTGAGGGGGAGCTACTC 60.033 60.000 0.00 0.00 0.00 2.59
312 313 0.324830 GTGACTGAGGGGGAGCTACT 60.325 60.000 0.00 0.00 0.00 2.57
313 314 0.614979 TGTGACTGAGGGGGAGCTAC 60.615 60.000 0.00 0.00 0.00 3.58
314 315 0.324738 CTGTGACTGAGGGGGAGCTA 60.325 60.000 0.00 0.00 0.00 3.32
315 316 1.611851 CTGTGACTGAGGGGGAGCT 60.612 63.158 0.00 0.00 0.00 4.09
316 317 1.484444 AACTGTGACTGAGGGGGAGC 61.484 60.000 0.00 0.00 0.00 4.70
317 318 0.322975 CAACTGTGACTGAGGGGGAG 59.677 60.000 0.00 0.00 0.00 4.30
318 319 1.127567 CCAACTGTGACTGAGGGGGA 61.128 60.000 0.00 0.00 0.00 4.81
319 320 1.376466 CCAACTGTGACTGAGGGGG 59.624 63.158 0.00 0.00 0.00 5.40
320 321 1.302832 GCCAACTGTGACTGAGGGG 60.303 63.158 0.00 0.00 0.00 4.79
321 322 0.109342 AAGCCAACTGTGACTGAGGG 59.891 55.000 0.00 0.00 0.00 4.30
322 323 1.202687 TGAAGCCAACTGTGACTGAGG 60.203 52.381 0.00 0.00 0.00 3.86
323 324 1.869767 GTGAAGCCAACTGTGACTGAG 59.130 52.381 0.00 0.00 0.00 3.35
324 325 1.806247 CGTGAAGCCAACTGTGACTGA 60.806 52.381 0.00 0.00 0.00 3.41
325 326 0.583438 CGTGAAGCCAACTGTGACTG 59.417 55.000 0.00 0.00 0.00 3.51
326 327 0.532862 CCGTGAAGCCAACTGTGACT 60.533 55.000 0.00 0.00 0.00 3.41
327 328 1.941812 CCGTGAAGCCAACTGTGAC 59.058 57.895 0.00 0.00 0.00 3.67
328 329 1.891919 GCCGTGAAGCCAACTGTGA 60.892 57.895 0.00 0.00 0.00 3.58
329 330 1.447317 AAGCCGTGAAGCCAACTGTG 61.447 55.000 0.00 0.00 0.00 3.66
330 331 1.152963 AAGCCGTGAAGCCAACTGT 60.153 52.632 0.00 0.00 0.00 3.55
331 332 1.165907 TGAAGCCGTGAAGCCAACTG 61.166 55.000 0.00 0.00 0.00 3.16
332 333 0.250901 ATGAAGCCGTGAAGCCAACT 60.251 50.000 0.00 0.00 0.00 3.16
333 334 0.169009 GATGAAGCCGTGAAGCCAAC 59.831 55.000 0.00 0.00 0.00 3.77
334 335 0.036732 AGATGAAGCCGTGAAGCCAA 59.963 50.000 0.00 0.00 0.00 4.52
335 336 0.391661 GAGATGAAGCCGTGAAGCCA 60.392 55.000 0.00 0.00 0.00 4.75
336 337 0.107945 AGAGATGAAGCCGTGAAGCC 60.108 55.000 0.00 0.00 0.00 4.35
337 338 1.663135 GAAGAGATGAAGCCGTGAAGC 59.337 52.381 0.00 0.00 0.00 3.86
338 339 1.923204 CGAAGAGATGAAGCCGTGAAG 59.077 52.381 0.00 0.00 0.00 3.02
339 340 1.996292 CGAAGAGATGAAGCCGTGAA 58.004 50.000 0.00 0.00 0.00 3.18
340 341 0.458543 GCGAAGAGATGAAGCCGTGA 60.459 55.000 0.00 0.00 0.00 4.35
341 342 1.424493 GGCGAAGAGATGAAGCCGTG 61.424 60.000 0.00 0.00 38.28 4.94
342 343 1.153549 GGCGAAGAGATGAAGCCGT 60.154 57.895 0.00 0.00 38.28 5.68
343 344 3.711348 GGCGAAGAGATGAAGCCG 58.289 61.111 0.00 0.00 38.28 5.52
344 345 0.813210 CAGGGCGAAGAGATGAAGCC 60.813 60.000 0.00 0.00 46.51 4.35
345 346 1.435408 GCAGGGCGAAGAGATGAAGC 61.435 60.000 0.00 0.00 0.00 3.86
346 347 2.687842 GCAGGGCGAAGAGATGAAG 58.312 57.895 0.00 0.00 0.00 3.02
347 348 4.941609 GCAGGGCGAAGAGATGAA 57.058 55.556 0.00 0.00 0.00 2.57
378 379 3.330853 GACGAAGCATAGCCGCGG 61.331 66.667 24.05 24.05 36.85 6.46
379 380 3.682315 CGACGAAGCATAGCCGCG 61.682 66.667 0.00 0.00 36.85 6.46
380 381 3.330853 CCGACGAAGCATAGCCGC 61.331 66.667 0.00 0.00 0.00 6.53
381 382 3.330853 GCCGACGAAGCATAGCCG 61.331 66.667 0.00 0.00 0.00 5.52
382 383 1.951631 GAGCCGACGAAGCATAGCC 60.952 63.158 0.00 0.00 0.00 3.93
383 384 1.226974 TGAGCCGACGAAGCATAGC 60.227 57.895 0.00 0.00 0.00 2.97
384 385 0.101399 AGTGAGCCGACGAAGCATAG 59.899 55.000 0.00 0.00 0.00 2.23
385 386 1.065102 GTAGTGAGCCGACGAAGCATA 59.935 52.381 0.00 0.00 0.00 3.14
386 387 0.179134 GTAGTGAGCCGACGAAGCAT 60.179 55.000 0.00 0.00 0.00 3.79
387 388 1.211969 GTAGTGAGCCGACGAAGCA 59.788 57.895 0.00 0.00 0.00 3.91
388 389 0.798771 CAGTAGTGAGCCGACGAAGC 60.799 60.000 0.00 0.00 0.00 3.86
389 390 0.522180 ACAGTAGTGAGCCGACGAAG 59.478 55.000 4.09 0.00 0.00 3.79
390 391 0.956633 AACAGTAGTGAGCCGACGAA 59.043 50.000 4.09 0.00 0.00 3.85
391 392 1.466167 GTAACAGTAGTGAGCCGACGA 59.534 52.381 4.09 0.00 0.00 4.20
392 393 1.198408 TGTAACAGTAGTGAGCCGACG 59.802 52.381 4.09 0.00 0.00 5.12
393 394 2.864968 CTGTAACAGTAGTGAGCCGAC 58.135 52.381 4.09 0.00 0.00 4.79
394 395 1.201647 GCTGTAACAGTAGTGAGCCGA 59.798 52.381 4.09 0.00 33.43 5.54
395 396 1.202582 AGCTGTAACAGTAGTGAGCCG 59.797 52.381 4.09 0.00 33.43 5.52
396 397 3.254892 GAAGCTGTAACAGTAGTGAGCC 58.745 50.000 4.09 0.00 33.43 4.70
397 398 2.917971 CGAAGCTGTAACAGTAGTGAGC 59.082 50.000 4.09 2.64 33.43 4.26
414 415 3.901797 AAAGAGGCACCGGGCGAAG 62.902 63.158 6.32 0.00 46.16 3.79
415 416 3.948719 AAAGAGGCACCGGGCGAA 61.949 61.111 6.32 0.00 46.16 4.70
416 417 4.697756 CAAAGAGGCACCGGGCGA 62.698 66.667 6.32 0.00 46.16 5.54
423 424 4.090057 GTCGCGGCAAAGAGGCAC 62.090 66.667 5.47 0.00 44.47 5.01
426 427 3.423154 GTGGTCGCGGCAAAGAGG 61.423 66.667 14.93 0.00 0.00 3.69
427 428 3.423154 GGTGGTCGCGGCAAAGAG 61.423 66.667 14.93 0.00 0.00 2.85
428 429 3.876589 GAGGTGGTCGCGGCAAAGA 62.877 63.158 14.93 0.00 0.00 2.52
429 430 3.423154 GAGGTGGTCGCGGCAAAG 61.423 66.667 14.93 0.00 0.00 2.77
430 431 4.243008 TGAGGTGGTCGCGGCAAA 62.243 61.111 14.93 0.00 0.00 3.68
431 432 4.680237 CTGAGGTGGTCGCGGCAA 62.680 66.667 14.93 0.00 0.00 4.52
437 438 4.767255 GGCCTGCTGAGGTGGTCG 62.767 72.222 0.00 0.00 42.15 4.79
438 439 3.196207 TTGGCCTGCTGAGGTGGTC 62.196 63.158 3.32 0.00 42.15 4.02
439 440 3.177884 TTGGCCTGCTGAGGTGGT 61.178 61.111 3.32 0.00 42.15 4.16
440 441 2.674380 GTTGGCCTGCTGAGGTGG 60.674 66.667 3.32 0.00 42.15 4.61
441 442 1.673665 GAGTTGGCCTGCTGAGGTG 60.674 63.158 3.32 0.00 42.15 4.00
442 443 2.753029 GAGTTGGCCTGCTGAGGT 59.247 61.111 3.32 0.00 42.15 3.85
443 444 2.045536 GGAGTTGGCCTGCTGAGG 60.046 66.667 3.32 0.00 43.19 3.86
444 445 1.673665 GTGGAGTTGGCCTGCTGAG 60.674 63.158 3.32 0.00 31.70 3.35
445 446 2.431683 GTGGAGTTGGCCTGCTGA 59.568 61.111 3.32 0.00 31.70 4.26
446 447 2.674380 GGTGGAGTTGGCCTGCTG 60.674 66.667 3.32 0.00 31.70 4.41
447 448 2.856000 AGGTGGAGTTGGCCTGCT 60.856 61.111 3.32 0.92 31.70 4.24
448 449 1.553690 TAGAGGTGGAGTTGGCCTGC 61.554 60.000 3.32 0.00 31.89 4.85
449 450 0.250513 GTAGAGGTGGAGTTGGCCTG 59.749 60.000 3.32 0.00 31.89 4.85
450 451 0.910088 GGTAGAGGTGGAGTTGGCCT 60.910 60.000 3.32 0.00 34.93 5.19
451 452 1.602771 GGTAGAGGTGGAGTTGGCC 59.397 63.158 0.00 0.00 0.00 5.36
452 453 1.602771 GGGTAGAGGTGGAGTTGGC 59.397 63.158 0.00 0.00 0.00 4.52
453 454 1.614241 CGGGGTAGAGGTGGAGTTGG 61.614 65.000 0.00 0.00 0.00 3.77
454 455 0.903454 ACGGGGTAGAGGTGGAGTTG 60.903 60.000 0.00 0.00 0.00 3.16
455 456 0.614134 GACGGGGTAGAGGTGGAGTT 60.614 60.000 0.00 0.00 0.00 3.01
456 457 1.000107 GACGGGGTAGAGGTGGAGT 60.000 63.158 0.00 0.00 0.00 3.85
457 458 1.757340 GGACGGGGTAGAGGTGGAG 60.757 68.421 0.00 0.00 0.00 3.86
458 459 2.361771 GGACGGGGTAGAGGTGGA 59.638 66.667 0.00 0.00 0.00 4.02
459 460 3.145551 CGGACGGGGTAGAGGTGG 61.146 72.222 0.00 0.00 0.00 4.61
460 461 3.834799 GCGGACGGGGTAGAGGTG 61.835 72.222 0.00 0.00 0.00 4.00
471 472 4.084888 GAAACCTTGCCGCGGACG 62.085 66.667 33.48 15.77 39.67 4.79
472 473 2.668550 AGAAACCTTGCCGCGGAC 60.669 61.111 33.48 21.14 0.00 4.79
473 474 2.668212 CAGAAACCTTGCCGCGGA 60.668 61.111 33.48 11.82 0.00 5.54
474 475 4.404654 GCAGAAACCTTGCCGCGG 62.405 66.667 24.05 24.05 35.54 6.46
475 476 3.314388 GAGCAGAAACCTTGCCGCG 62.314 63.158 0.00 0.00 42.48 6.46
476 477 2.563427 GAGCAGAAACCTTGCCGC 59.437 61.111 0.00 0.00 42.48 6.53
477 478 2.680913 CGGAGCAGAAACCTTGCCG 61.681 63.158 0.00 0.00 42.48 5.69
478 479 2.335712 CCGGAGCAGAAACCTTGCC 61.336 63.158 0.00 0.00 42.48 4.52
479 480 1.600916 ACCGGAGCAGAAACCTTGC 60.601 57.895 9.46 0.00 41.83 4.01
480 481 1.856265 GCACCGGAGCAGAAACCTTG 61.856 60.000 19.70 0.00 0.00 3.61
595 601 2.360726 TACGCACGCTCTCCTCCA 60.361 61.111 0.00 0.00 0.00 3.86
670 676 5.011329 ACCCTCAGTGTACAAAAGTAATCGA 59.989 40.000 0.00 0.00 0.00 3.59
790 796 4.974368 TTTGGAAGTTTTCATGTGACGT 57.026 36.364 0.00 0.00 0.00 4.34
1497 1508 3.142838 GGCACATGCGGCAATCCT 61.143 61.111 6.82 0.00 43.26 3.24
1815 1827 4.069304 GTTGCATGTCTACCAAACCTACA 58.931 43.478 0.00 0.00 0.00 2.74
1928 1940 6.855763 TCAGGAAAGGAAATATTTGTGCAT 57.144 33.333 5.17 0.00 0.00 3.96
2146 2497 6.940298 ACTACATAACACAGTATGCAAAGGTT 59.060 34.615 0.00 0.00 42.53 3.50
2240 2591 4.054671 CGATGTCCAGCTTCCTCTTATTC 58.945 47.826 0.00 0.00 0.00 1.75
2367 2718 7.928307 TCCAATTTAGAGGCATTCATATAGC 57.072 36.000 0.00 0.00 0.00 2.97
2675 3026 9.753674 AGAAGAATTTAATGGACAAATACCTGA 57.246 29.630 0.00 0.00 0.00 3.86
2703 3054 7.721402 TGCACAAACAACTAAATAGTTCCATT 58.279 30.769 2.88 0.00 44.19 3.16
2705 3056 6.701145 TGCACAAACAACTAAATAGTTCCA 57.299 33.333 2.88 0.00 44.19 3.53
2706 3057 9.685828 TTAATGCACAAACAACTAAATAGTTCC 57.314 29.630 2.88 0.00 44.19 3.62
2711 3062 9.834628 GCTACTTAATGCACAAACAACTAAATA 57.165 29.630 0.00 0.00 0.00 1.40
2712 3063 8.576442 AGCTACTTAATGCACAAACAACTAAAT 58.424 29.630 0.00 0.00 0.00 1.40
2714 3065 7.012894 ACAGCTACTTAATGCACAAACAACTAA 59.987 33.333 0.00 0.00 0.00 2.24
2716 3067 5.299279 ACAGCTACTTAATGCACAAACAACT 59.701 36.000 0.00 0.00 0.00 3.16
2717 3068 5.519722 ACAGCTACTTAATGCACAAACAAC 58.480 37.500 0.00 0.00 0.00 3.32
2719 3070 6.869315 TTACAGCTACTTAATGCACAAACA 57.131 33.333 0.00 0.00 0.00 2.83
2720 3071 7.273381 CCATTTACAGCTACTTAATGCACAAAC 59.727 37.037 0.00 0.00 0.00 2.93
2722 3073 6.127758 CCCATTTACAGCTACTTAATGCACAA 60.128 38.462 0.00 0.00 0.00 3.33
2724 3075 5.588648 TCCCATTTACAGCTACTTAATGCAC 59.411 40.000 0.00 0.00 0.00 4.57
2734 3085 9.860650 ACAAACATAATATCCCATTTACAGCTA 57.139 29.630 0.00 0.00 0.00 3.32
2735 3086 8.766994 ACAAACATAATATCCCATTTACAGCT 57.233 30.769 0.00 0.00 0.00 4.24
2736 3087 9.816354 AAACAAACATAATATCCCATTTACAGC 57.184 29.630 0.00 0.00 0.00 4.40
2761 3112 9.237187 TGCCATTTACTAGAATGTAATGAACAA 57.763 29.630 0.00 0.00 42.70 2.83
2777 3128 9.723601 ACAAACATCAAATAATTGCCATTTACT 57.276 25.926 0.00 0.00 36.45 2.24
2778 3129 9.757859 CACAAACATCAAATAATTGCCATTTAC 57.242 29.630 0.00 0.00 36.45 2.01
2779 3130 8.449397 GCACAAACATCAAATAATTGCCATTTA 58.551 29.630 0.00 0.00 36.45 1.40
2780 3131 7.040617 TGCACAAACATCAAATAATTGCCATTT 60.041 29.630 0.00 0.00 36.45 2.32
2781 3132 6.430308 TGCACAAACATCAAATAATTGCCATT 59.570 30.769 0.00 0.00 36.45 3.16
2783 3134 5.303165 TGCACAAACATCAAATAATTGCCA 58.697 33.333 0.00 0.00 36.45 4.92
2784 3135 5.859521 TGCACAAACATCAAATAATTGCC 57.140 34.783 0.00 0.00 36.45 4.52
2785 3136 8.658609 AGTAATGCACAAACATCAAATAATTGC 58.341 29.630 0.00 0.00 36.45 3.56
2789 3140 9.352784 GCTAAGTAATGCACAAACATCAAATAA 57.647 29.630 0.00 0.00 0.00 1.40
2790 3141 8.739039 AGCTAAGTAATGCACAAACATCAAATA 58.261 29.630 0.00 0.00 0.00 1.40
2791 3142 7.543172 CAGCTAAGTAATGCACAAACATCAAAT 59.457 33.333 0.00 0.00 0.00 2.32
2793 3144 6.016360 ACAGCTAAGTAATGCACAAACATCAA 60.016 34.615 0.00 0.00 0.00 2.57
2795 3146 5.942872 ACAGCTAAGTAATGCACAAACATC 58.057 37.500 0.00 0.00 0.00 3.06
2796 3147 5.964958 ACAGCTAAGTAATGCACAAACAT 57.035 34.783 0.00 0.00 0.00 2.71
2797 3148 6.869315 TTACAGCTAAGTAATGCACAAACA 57.131 33.333 0.00 0.00 0.00 2.83
2798 3149 7.273381 CCATTTACAGCTAAGTAATGCACAAAC 59.727 37.037 0.00 0.00 34.25 2.93
2800 3151 6.127758 CCCATTTACAGCTAAGTAATGCACAA 60.128 38.462 0.00 0.00 34.25 3.33
2802 3153 5.588648 TCCCATTTACAGCTAAGTAATGCAC 59.411 40.000 0.00 0.00 34.25 4.57
2805 3156 9.507329 ACATATCCCATTTACAGCTAAGTAATG 57.493 33.333 0.00 1.48 34.25 1.90
2806 3157 9.507329 CACATATCCCATTTACAGCTAAGTAAT 57.493 33.333 0.00 0.00 34.25 1.89
2807 3158 8.491134 ACACATATCCCATTTACAGCTAAGTAA 58.509 33.333 0.00 0.00 32.46 2.24
2808 3159 7.931407 CACACATATCCCATTTACAGCTAAGTA 59.069 37.037 0.00 0.00 0.00 2.24
2809 3160 6.767902 CACACATATCCCATTTACAGCTAAGT 59.232 38.462 0.00 0.00 0.00 2.24
2810 3161 6.992123 TCACACATATCCCATTTACAGCTAAG 59.008 38.462 0.00 0.00 0.00 2.18
2811 3162 6.894682 TCACACATATCCCATTTACAGCTAA 58.105 36.000 0.00 0.00 0.00 3.09
2812 3163 6.493189 TCACACATATCCCATTTACAGCTA 57.507 37.500 0.00 0.00 0.00 3.32
2813 3164 5.372343 TCACACATATCCCATTTACAGCT 57.628 39.130 0.00 0.00 0.00 4.24
2814 3165 5.532406 ACATCACACATATCCCATTTACAGC 59.468 40.000 0.00 0.00 0.00 4.40
2815 3166 7.572523 AACATCACACATATCCCATTTACAG 57.427 36.000 0.00 0.00 0.00 2.74
2816 3167 7.953005 AAACATCACACATATCCCATTTACA 57.047 32.000 0.00 0.00 0.00 2.41
2921 3272 5.299279 ACAGCTACTTAATGCACAAACAACT 59.701 36.000 0.00 0.00 0.00 3.16
2981 3332 9.027129 CAAACATCAGATAATTGCCATTTACTG 57.973 33.333 9.01 9.01 0.00 2.74
2982 3333 8.752187 ACAAACATCAGATAATTGCCATTTACT 58.248 29.630 7.09 0.00 0.00 2.24
2983 3334 8.810427 CACAAACATCAGATAATTGCCATTTAC 58.190 33.333 7.09 0.00 0.00 2.01
2984 3335 7.492020 GCACAAACATCAGATAATTGCCATTTA 59.508 33.333 7.09 0.00 0.00 1.40
2985 3336 6.314400 GCACAAACATCAGATAATTGCCATTT 59.686 34.615 7.09 0.00 0.00 2.32
2986 3337 5.813672 GCACAAACATCAGATAATTGCCATT 59.186 36.000 7.09 0.00 0.00 3.16
2988 3339 4.220163 TGCACAAACATCAGATAATTGCCA 59.780 37.500 7.09 3.62 0.00 4.92
2989 3340 4.746729 TGCACAAACATCAGATAATTGCC 58.253 39.130 7.09 1.70 0.00 4.52
2990 3341 6.897259 AATGCACAAACATCAGATAATTGC 57.103 33.333 0.00 0.00 0.00 3.56
2991 3342 9.577110 AAGTAATGCACAAACATCAGATAATTG 57.423 29.630 0.00 6.01 0.00 2.32
2994 3345 8.397906 GCTAAGTAATGCACAAACATCAGATAA 58.602 33.333 0.00 0.00 0.00 1.75
2995 3346 7.770433 AGCTAAGTAATGCACAAACATCAGATA 59.230 33.333 0.00 0.00 0.00 1.98
2996 3347 6.600822 AGCTAAGTAATGCACAAACATCAGAT 59.399 34.615 0.00 0.00 0.00 2.90
2998 3349 6.025896 CAGCTAAGTAATGCACAAACATCAG 58.974 40.000 0.00 0.00 0.00 2.90
3000 3351 5.942872 ACAGCTAAGTAATGCACAAACATC 58.057 37.500 0.00 0.00 0.00 3.06
3001 3352 5.964958 ACAGCTAAGTAATGCACAAACAT 57.035 34.783 0.00 0.00 0.00 2.71
3002 3353 6.869315 TTACAGCTAAGTAATGCACAAACA 57.131 33.333 0.00 0.00 0.00 2.83
3003 3354 8.638565 CAATTTACAGCTAAGTAATGCACAAAC 58.361 33.333 0.00 0.00 34.25 2.93
3470 3832 0.976641 TCTGCCCTGATCTTCACGTT 59.023 50.000 0.00 0.00 0.00 3.99
3798 4161 3.004734 GCAACATTGAAGCACCTACTGTT 59.995 43.478 0.00 0.00 0.00 3.16
3877 4240 7.361457 TCCTATGTAGATAAGGTTGGTTCTG 57.639 40.000 0.00 0.00 0.00 3.02
4406 4773 0.377203 GAAGGCGGTGATTTTAGCGG 59.623 55.000 0.00 0.00 41.47 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.