Multiple sequence alignment - TraesCS4B01G142000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G142000 chr4B 100.000 5266 0 0 1 5266 187431501 187436766 0.000000e+00 9725.0
1 TraesCS4B01G142000 chr4B 100.000 28 0 0 2772 2799 631842229 631842202 1.000000e-02 52.8
2 TraesCS4B01G142000 chr4A 90.566 2862 106 50 384 3122 446952320 446949500 0.000000e+00 3639.0
3 TraesCS4B01G142000 chr4A 94.571 792 34 6 3762 4548 446948990 446948203 0.000000e+00 1216.0
4 TraesCS4B01G142000 chr4A 88.312 539 40 9 3138 3670 446949518 446948997 4.480000e-175 625.0
5 TraesCS4B01G142000 chr4A 89.030 474 48 2 4793 5266 446948218 446947749 7.600000e-163 584.0
6 TraesCS4B01G142000 chr4A 100.000 35 0 0 3697 3731 446949026 446948992 1.220000e-06 65.8
7 TraesCS4B01G142000 chr4D 90.992 1965 75 34 1238 3115 122758065 122760014 0.000000e+00 2555.0
8 TraesCS4B01G142000 chr4D 90.920 1718 91 35 3138 4840 122760003 122761670 0.000000e+00 2248.0
9 TraesCS4B01G142000 chr4D 94.108 1222 32 16 384 1586 122756510 122757710 0.000000e+00 1821.0
10 TraesCS4B01G142000 chrUn 94.309 246 14 0 1 246 302184196 302184441 1.380000e-100 377.0
11 TraesCS4B01G142000 chrUn 92.593 135 10 0 250 384 103940059 103940193 1.500000e-45 195.0
12 TraesCS4B01G142000 chr6B 94.309 246 14 0 1 246 189566482 189566237 1.380000e-100 377.0
13 TraesCS4B01G142000 chr5B 93.902 246 15 0 1 246 496329179 496329424 6.440000e-99 372.0
14 TraesCS4B01G142000 chr5B 93.902 246 15 0 1 246 598148478 598148723 6.440000e-99 372.0
15 TraesCS4B01G142000 chr2A 93.902 246 15 0 1 246 763210427 763210182 6.440000e-99 372.0
16 TraesCS4B01G142000 chr1B 93.902 246 15 0 1 246 3574819 3574574 6.440000e-99 372.0
17 TraesCS4B01G142000 chr1B 93.902 246 15 0 1 246 24509137 24509382 6.440000e-99 372.0
18 TraesCS4B01G142000 chr1B 93.574 249 16 0 1 249 60599705 60599457 6.440000e-99 372.0
19 TraesCS4B01G142000 chr1B 92.361 144 11 0 248 391 641138308 641138451 6.910000e-49 206.0
20 TraesCS4B01G142000 chr7A 92.885 253 18 0 1 253 679853733 679853481 8.330000e-98 368.0
21 TraesCS4B01G142000 chr7D 94.891 137 7 0 248 384 479736792 479736928 1.150000e-51 215.0
22 TraesCS4B01G142000 chr2D 94.161 137 7 1 248 384 274925046 274924911 1.920000e-49 207.0
23 TraesCS4B01G142000 chr2D 100.000 31 0 0 2771 2801 185161363 185161393 2.050000e-04 58.4
24 TraesCS4B01G142000 chr2D 94.444 36 1 1 2764 2798 245521908 245521873 3.000000e-03 54.7
25 TraesCS4B01G142000 chr5D 93.382 136 9 0 248 383 162417430 162417295 8.940000e-48 202.0
26 TraesCS4B01G142000 chr3B 91.912 136 9 2 251 386 44260562 44260695 6.960000e-44 189.0
27 TraesCS4B01G142000 chr1D 93.496 123 7 1 277 398 176953079 176952957 1.160000e-41 182.0
28 TraesCS4B01G142000 chr1D 90.210 143 8 1 248 384 398871469 398871327 1.160000e-41 182.0
29 TraesCS4B01G142000 chr5A 87.671 146 17 1 252 396 19539516 19539661 9.070000e-38 169.0
30 TraesCS4B01G142000 chr3D 100.000 30 0 0 2768 2797 4291464 4291493 7.370000e-04 56.5
31 TraesCS4B01G142000 chr3A 100.000 30 0 0 2768 2797 9881891 9881920 7.370000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G142000 chr4B 187431501 187436766 5265 False 9725.00 9725 100.000000 1 5266 1 chr4B.!!$F1 5265
1 TraesCS4B01G142000 chr4A 446947749 446952320 4571 True 1225.96 3639 92.495800 384 5266 5 chr4A.!!$R1 4882
2 TraesCS4B01G142000 chr4D 122756510 122761670 5160 False 2208.00 2555 92.006667 384 4840 3 chr4D.!!$F1 4456

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 263 0.105709 CCTCAGGGGGTGTTTGGTTT 60.106 55.0 0.0 0.0 0.0 3.27 F
321 322 0.107654 CCCTCCCGTTTGGCTTCTAG 60.108 60.0 0.0 0.0 0.0 2.43 F
380 381 0.185175 AGTCCCTGAACCAAACACCC 59.815 55.0 0.0 0.0 0.0 4.61 F
2222 2985 0.320374 TTGTCTGGCCCTGTCTTACG 59.680 55.0 0.0 0.0 0.0 3.18 F
3108 3966 0.037605 AAGCCGTACCTTTGGACTCG 60.038 55.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 2585 1.079057 GCCCTCGTTGAAGTCCCTC 60.079 63.158 0.00 0.0 0.00 4.30 R
2248 3011 1.339610 CAATTGAAGCCACGTTTCCCA 59.660 47.619 0.00 0.0 0.00 4.37 R
2354 3131 0.322816 GATCATATGCCGCCCATGGT 60.323 55.000 11.73 0.0 35.34 3.55 R
3434 4299 0.644937 ACAGATAGCCCCCTCTCCTT 59.355 55.000 0.00 0.0 0.00 3.36 R
4753 5627 0.042448 GTCGCCACGTGTTTCTTGTC 60.042 55.000 15.65 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.448438 AGTAACATAGATGTCACATAAGCAAAA 57.552 29.630 0.00 0.00 40.80 2.44
37 38 9.853555 TGTCACATAAGCAAAAATATTAAGGTG 57.146 29.630 0.00 0.00 0.00 4.00
40 41 9.853555 CACATAAGCAAAAATATTAAGGTGACA 57.146 29.630 0.00 0.00 0.00 3.58
46 47 9.297037 AGCAAAAATATTAAGGTGACAAGTAGT 57.703 29.630 0.00 0.00 0.00 2.73
47 48 9.908152 GCAAAAATATTAAGGTGACAAGTAGTT 57.092 29.630 0.00 0.00 0.00 2.24
56 57 9.706691 TTAAGGTGACAAGTAGTTAATGAAGAG 57.293 33.333 0.00 0.00 0.00 2.85
57 58 7.540474 AGGTGACAAGTAGTTAATGAAGAGA 57.460 36.000 0.00 0.00 0.00 3.10
58 59 7.607250 AGGTGACAAGTAGTTAATGAAGAGAG 58.393 38.462 0.00 0.00 0.00 3.20
59 60 7.451877 AGGTGACAAGTAGTTAATGAAGAGAGA 59.548 37.037 0.00 0.00 0.00 3.10
60 61 7.757624 GGTGACAAGTAGTTAATGAAGAGAGAG 59.242 40.741 0.00 0.00 0.00 3.20
61 62 8.516234 GTGACAAGTAGTTAATGAAGAGAGAGA 58.484 37.037 0.00 0.00 0.00 3.10
62 63 8.516234 TGACAAGTAGTTAATGAAGAGAGAGAC 58.484 37.037 0.00 0.00 0.00 3.36
63 64 8.410673 ACAAGTAGTTAATGAAGAGAGAGACA 57.589 34.615 0.00 0.00 0.00 3.41
64 65 8.861086 ACAAGTAGTTAATGAAGAGAGAGACAA 58.139 33.333 0.00 0.00 0.00 3.18
65 66 9.698309 CAAGTAGTTAATGAAGAGAGAGACAAA 57.302 33.333 0.00 0.00 0.00 2.83
75 76 9.660180 ATGAAGAGAGAGACAAATAAAGTAACC 57.340 33.333 0.00 0.00 0.00 2.85
76 77 8.871125 TGAAGAGAGAGACAAATAAAGTAACCT 58.129 33.333 0.00 0.00 0.00 3.50
98 99 8.932945 ACCTAATATGTTATCATCACATAGCG 57.067 34.615 0.00 0.00 39.83 4.26
99 100 7.492669 ACCTAATATGTTATCATCACATAGCGC 59.507 37.037 0.00 0.00 39.83 5.92
100 101 7.708322 CCTAATATGTTATCATCACATAGCGCT 59.292 37.037 17.26 17.26 39.83 5.92
101 102 7.912056 AATATGTTATCATCACATAGCGCTT 57.088 32.000 18.68 0.00 39.83 4.68
102 103 7.912056 ATATGTTATCATCACATAGCGCTTT 57.088 32.000 18.68 4.25 39.83 3.51
103 104 6.624352 ATGTTATCATCACATAGCGCTTTT 57.376 33.333 18.68 0.00 32.88 2.27
104 105 6.048073 TGTTATCATCACATAGCGCTTTTC 57.952 37.500 18.68 0.00 0.00 2.29
105 106 5.584251 TGTTATCATCACATAGCGCTTTTCA 59.416 36.000 18.68 0.00 0.00 2.69
106 107 6.093357 TGTTATCATCACATAGCGCTTTTCAA 59.907 34.615 18.68 0.00 0.00 2.69
107 108 5.762825 ATCATCACATAGCGCTTTTCAAT 57.237 34.783 18.68 0.00 0.00 2.57
108 109 6.866010 ATCATCACATAGCGCTTTTCAATA 57.134 33.333 18.68 0.00 0.00 1.90
109 110 6.048073 TCATCACATAGCGCTTTTCAATAC 57.952 37.500 18.68 0.00 0.00 1.89
110 111 5.584251 TCATCACATAGCGCTTTTCAATACA 59.416 36.000 18.68 0.00 0.00 2.29
111 112 5.871465 TCACATAGCGCTTTTCAATACAA 57.129 34.783 18.68 0.00 0.00 2.41
112 113 6.247727 TCACATAGCGCTTTTCAATACAAA 57.752 33.333 18.68 0.00 0.00 2.83
113 114 6.673106 TCACATAGCGCTTTTCAATACAAAA 58.327 32.000 18.68 0.00 0.00 2.44
114 115 7.312154 TCACATAGCGCTTTTCAATACAAAAT 58.688 30.769 18.68 0.00 0.00 1.82
115 116 7.273164 TCACATAGCGCTTTTCAATACAAAATG 59.727 33.333 18.68 10.96 0.00 2.32
116 117 7.273164 CACATAGCGCTTTTCAATACAAAATGA 59.727 33.333 18.68 0.00 0.00 2.57
117 118 7.485913 ACATAGCGCTTTTCAATACAAAATGAG 59.514 33.333 18.68 0.00 0.00 2.90
118 119 5.772521 AGCGCTTTTCAATACAAAATGAGT 58.227 33.333 2.64 0.00 0.00 3.41
119 120 5.858581 AGCGCTTTTCAATACAAAATGAGTC 59.141 36.000 2.64 0.00 0.00 3.36
120 121 5.858581 GCGCTTTTCAATACAAAATGAGTCT 59.141 36.000 0.00 0.00 0.00 3.24
121 122 7.021196 GCGCTTTTCAATACAAAATGAGTCTA 58.979 34.615 0.00 0.00 0.00 2.59
122 123 7.007456 GCGCTTTTCAATACAAAATGAGTCTAC 59.993 37.037 0.00 0.00 0.00 2.59
123 124 8.015087 CGCTTTTCAATACAAAATGAGTCTACA 58.985 33.333 0.00 0.00 0.00 2.74
124 125 9.677567 GCTTTTCAATACAAAATGAGTCTACAA 57.322 29.630 0.00 0.00 0.00 2.41
143 144 9.708222 GTCTACAAGACAATAAATAAGCATGTG 57.292 33.333 2.22 0.00 44.45 3.21
144 145 9.448438 TCTACAAGACAATAAATAAGCATGTGT 57.552 29.630 0.00 0.00 0.00 3.72
171 172 8.136563 TGTTACTACACATATAACACTTCCCA 57.863 34.615 0.00 0.00 34.65 4.37
172 173 8.036575 TGTTACTACACATATAACACTTCCCAC 58.963 37.037 0.00 0.00 34.65 4.61
173 174 6.869206 ACTACACATATAACACTTCCCACT 57.131 37.500 0.00 0.00 0.00 4.00
174 175 7.966339 ACTACACATATAACACTTCCCACTA 57.034 36.000 0.00 0.00 0.00 2.74
175 176 8.548880 ACTACACATATAACACTTCCCACTAT 57.451 34.615 0.00 0.00 0.00 2.12
176 177 9.650714 ACTACACATATAACACTTCCCACTATA 57.349 33.333 0.00 0.00 0.00 1.31
179 180 8.429641 ACACATATAACACTTCCCACTATAAGG 58.570 37.037 0.00 0.00 0.00 2.69
180 181 8.647796 CACATATAACACTTCCCACTATAAGGA 58.352 37.037 0.00 0.00 0.00 3.36
181 182 9.393786 ACATATAACACTTCCCACTATAAGGAT 57.606 33.333 0.00 0.00 30.55 3.24
186 187 8.849543 AACACTTCCCACTATAAGGATAGTAA 57.150 34.615 0.00 0.00 45.42 2.24
187 188 8.247666 ACACTTCCCACTATAAGGATAGTAAC 57.752 38.462 0.00 0.00 45.42 2.50
188 189 7.842743 ACACTTCCCACTATAAGGATAGTAACA 59.157 37.037 0.00 0.00 45.42 2.41
189 190 8.871125 CACTTCCCACTATAAGGATAGTAACAT 58.129 37.037 0.00 0.00 45.42 2.71
193 194 9.976776 TCCCACTATAAGGATAGTAACATAGAG 57.023 37.037 0.00 0.00 45.42 2.43
194 195 9.756571 CCCACTATAAGGATAGTAACATAGAGT 57.243 37.037 0.00 0.00 45.42 3.24
202 203 9.844257 AAGGATAGTAACATAGAGTAGTAACGT 57.156 33.333 0.00 0.00 0.00 3.99
207 208 8.442632 AGTAACATAGAGTAGTAACGTATGCA 57.557 34.615 0.00 0.00 33.77 3.96
208 209 9.064706 AGTAACATAGAGTAGTAACGTATGCAT 57.935 33.333 3.79 3.79 33.77 3.96
209 210 9.114965 GTAACATAGAGTAGTAACGTATGCATG 57.885 37.037 10.16 0.00 33.77 4.06
210 211 7.273320 ACATAGAGTAGTAACGTATGCATGT 57.727 36.000 10.16 0.00 33.77 3.21
211 212 7.713750 ACATAGAGTAGTAACGTATGCATGTT 58.286 34.615 10.16 8.56 37.62 2.71
212 213 8.843262 ACATAGAGTAGTAACGTATGCATGTTA 58.157 33.333 10.16 7.49 35.49 2.41
222 223 9.167239 GTAACGTATGCATGTTACTACTCTAAG 57.833 37.037 23.15 2.14 46.72 2.18
223 224 7.330900 ACGTATGCATGTTACTACTCTAAGT 57.669 36.000 10.16 0.00 0.00 2.24
224 225 7.769220 ACGTATGCATGTTACTACTCTAAGTT 58.231 34.615 10.16 0.00 0.00 2.66
225 226 8.896744 ACGTATGCATGTTACTACTCTAAGTTA 58.103 33.333 10.16 0.00 0.00 2.24
226 227 9.167239 CGTATGCATGTTACTACTCTAAGTTAC 57.833 37.037 10.16 0.00 31.32 2.50
229 230 7.769220 TGCATGTTACTACTCTAAGTTACTCC 58.231 38.462 0.00 0.00 31.82 3.85
230 231 7.147949 TGCATGTTACTACTCTAAGTTACTCCC 60.148 40.741 0.00 0.00 31.82 4.30
231 232 7.683945 GCATGTTACTACTCTAAGTTACTCCCC 60.684 44.444 0.00 0.00 31.82 4.81
232 233 6.793478 TGTTACTACTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
233 234 6.660949 TGTTACTACTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
234 235 5.533333 ACTACTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
235 236 6.649041 ACTACTCTAAGTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
236 237 7.223472 ACTACTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
237 238 7.061688 ACTACTCTAAGTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
238 239 6.088541 ACTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
239 240 5.892686 ACTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
240 241 5.206587 TCTAAGTTACTCCCCACTATGACC 58.793 45.833 0.00 0.00 0.00 4.02
241 242 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
242 243 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
243 244 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
244 245 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
245 246 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
246 247 0.691078 TCCCCACTATGACCAGCCTC 60.691 60.000 0.00 0.00 0.00 4.70
247 248 0.982852 CCCCACTATGACCAGCCTCA 60.983 60.000 0.00 0.00 0.00 3.86
248 249 0.467384 CCCACTATGACCAGCCTCAG 59.533 60.000 0.00 0.00 0.00 3.35
249 250 0.467384 CCACTATGACCAGCCTCAGG 59.533 60.000 0.00 0.00 0.00 3.86
250 251 0.467384 CACTATGACCAGCCTCAGGG 59.533 60.000 0.00 0.00 0.00 4.45
251 252 0.692419 ACTATGACCAGCCTCAGGGG 60.692 60.000 0.00 0.00 38.36 4.79
252 253 1.384502 TATGACCAGCCTCAGGGGG 60.385 63.158 0.00 0.00 35.12 5.40
258 259 2.846532 AGCCTCAGGGGGTGTTTG 59.153 61.111 0.00 0.00 45.16 2.93
259 260 2.283173 GCCTCAGGGGGTGTTTGG 60.283 66.667 0.00 0.00 35.12 3.28
260 261 3.146828 GCCTCAGGGGGTGTTTGGT 62.147 63.158 0.00 0.00 35.12 3.67
261 262 1.541672 CCTCAGGGGGTGTTTGGTT 59.458 57.895 0.00 0.00 0.00 3.67
262 263 0.105709 CCTCAGGGGGTGTTTGGTTT 60.106 55.000 0.00 0.00 0.00 3.27
263 264 1.146152 CCTCAGGGGGTGTTTGGTTTA 59.854 52.381 0.00 0.00 0.00 2.01
264 265 2.425102 CCTCAGGGGGTGTTTGGTTTAA 60.425 50.000 0.00 0.00 0.00 1.52
265 266 3.301274 CTCAGGGGGTGTTTGGTTTAAA 58.699 45.455 0.00 0.00 0.00 1.52
266 267 3.707102 CTCAGGGGGTGTTTGGTTTAAAA 59.293 43.478 0.00 0.00 0.00 1.52
267 268 3.707102 TCAGGGGGTGTTTGGTTTAAAAG 59.293 43.478 0.00 0.00 0.00 2.27
268 269 3.452990 CAGGGGGTGTTTGGTTTAAAAGT 59.547 43.478 0.00 0.00 0.00 2.66
269 270 3.707611 AGGGGGTGTTTGGTTTAAAAGTC 59.292 43.478 0.00 0.00 0.00 3.01
270 271 3.181463 GGGGGTGTTTGGTTTAAAAGTCC 60.181 47.826 0.00 0.00 0.00 3.85
271 272 3.707611 GGGGTGTTTGGTTTAAAAGTCCT 59.292 43.478 0.00 0.00 0.00 3.85
272 273 4.894705 GGGGTGTTTGGTTTAAAAGTCCTA 59.105 41.667 0.00 0.00 0.00 2.94
273 274 5.010314 GGGGTGTTTGGTTTAAAAGTCCTAG 59.990 44.000 0.00 0.00 0.00 3.02
274 275 5.010314 GGGTGTTTGGTTTAAAAGTCCTAGG 59.990 44.000 0.82 0.82 0.00 3.02
275 276 5.829391 GGTGTTTGGTTTAAAAGTCCTAGGA 59.171 40.000 7.62 7.62 0.00 2.94
276 277 6.238842 GGTGTTTGGTTTAAAAGTCCTAGGAC 60.239 42.308 31.29 31.29 44.86 3.85
303 304 5.997384 TCTAGTCCCTGTAGAAAAAGTCC 57.003 43.478 0.00 0.00 0.00 3.85
304 305 4.776308 TCTAGTCCCTGTAGAAAAAGTCCC 59.224 45.833 0.00 0.00 0.00 4.46
305 306 3.599348 AGTCCCTGTAGAAAAAGTCCCT 58.401 45.455 0.00 0.00 0.00 4.20
306 307 3.583526 AGTCCCTGTAGAAAAAGTCCCTC 59.416 47.826 0.00 0.00 0.00 4.30
307 308 2.910977 TCCCTGTAGAAAAAGTCCCTCC 59.089 50.000 0.00 0.00 0.00 4.30
308 309 2.026169 CCCTGTAGAAAAAGTCCCTCCC 60.026 54.545 0.00 0.00 0.00 4.30
309 310 2.354805 CCTGTAGAAAAAGTCCCTCCCG 60.355 54.545 0.00 0.00 0.00 5.14
310 311 2.302157 CTGTAGAAAAAGTCCCTCCCGT 59.698 50.000 0.00 0.00 0.00 5.28
311 312 2.707257 TGTAGAAAAAGTCCCTCCCGTT 59.293 45.455 0.00 0.00 0.00 4.44
312 313 3.136992 TGTAGAAAAAGTCCCTCCCGTTT 59.863 43.478 0.00 0.00 0.00 3.60
313 314 2.583143 AGAAAAAGTCCCTCCCGTTTG 58.417 47.619 0.00 0.00 0.00 2.93
314 315 1.611977 GAAAAAGTCCCTCCCGTTTGG 59.388 52.381 0.00 0.00 0.00 3.28
315 316 0.826256 AAAAGTCCCTCCCGTTTGGC 60.826 55.000 0.00 0.00 0.00 4.52
316 317 1.716028 AAAGTCCCTCCCGTTTGGCT 61.716 55.000 0.00 0.00 0.00 4.75
317 318 1.716028 AAGTCCCTCCCGTTTGGCTT 61.716 55.000 0.00 0.00 0.00 4.35
318 319 1.674651 GTCCCTCCCGTTTGGCTTC 60.675 63.158 0.00 0.00 0.00 3.86
319 320 1.846124 TCCCTCCCGTTTGGCTTCT 60.846 57.895 0.00 0.00 0.00 2.85
320 321 0.545787 TCCCTCCCGTTTGGCTTCTA 60.546 55.000 0.00 0.00 0.00 2.10
321 322 0.107654 CCCTCCCGTTTGGCTTCTAG 60.108 60.000 0.00 0.00 0.00 2.43
322 323 0.902531 CCTCCCGTTTGGCTTCTAGA 59.097 55.000 0.00 0.00 0.00 2.43
323 324 1.134670 CCTCCCGTTTGGCTTCTAGAG 60.135 57.143 0.00 0.00 0.00 2.43
324 325 1.825474 CTCCCGTTTGGCTTCTAGAGA 59.175 52.381 0.00 0.00 0.00 3.10
325 326 1.549170 TCCCGTTTGGCTTCTAGAGAC 59.451 52.381 0.00 0.00 0.00 3.36
326 327 1.550976 CCCGTTTGGCTTCTAGAGACT 59.449 52.381 0.00 0.00 33.09 3.24
327 328 2.028020 CCCGTTTGGCTTCTAGAGACTT 60.028 50.000 0.00 0.00 33.09 3.01
328 329 3.557264 CCCGTTTGGCTTCTAGAGACTTT 60.557 47.826 0.00 0.00 33.09 2.66
329 330 4.065789 CCGTTTGGCTTCTAGAGACTTTT 58.934 43.478 0.00 0.00 33.09 2.27
330 331 4.515567 CCGTTTGGCTTCTAGAGACTTTTT 59.484 41.667 0.00 0.00 33.09 1.94
331 332 5.699458 CCGTTTGGCTTCTAGAGACTTTTTA 59.301 40.000 0.00 0.00 33.09 1.52
332 333 6.128526 CCGTTTGGCTTCTAGAGACTTTTTAG 60.129 42.308 0.00 0.00 33.09 1.85
333 334 6.128526 CGTTTGGCTTCTAGAGACTTTTTAGG 60.129 42.308 0.00 0.00 33.09 2.69
334 335 6.681729 TTGGCTTCTAGAGACTTTTTAGGA 57.318 37.500 0.00 0.00 33.09 2.94
335 336 6.681729 TGGCTTCTAGAGACTTTTTAGGAA 57.318 37.500 0.00 0.00 33.09 3.36
336 337 6.465084 TGGCTTCTAGAGACTTTTTAGGAAC 58.535 40.000 0.00 0.00 33.09 3.62
337 338 6.270231 TGGCTTCTAGAGACTTTTTAGGAACT 59.730 38.462 0.00 0.00 36.94 3.01
338 339 7.162761 GGCTTCTAGAGACTTTTTAGGAACTT 58.837 38.462 0.00 0.00 41.75 2.66
339 340 7.662258 GGCTTCTAGAGACTTTTTAGGAACTTT 59.338 37.037 0.00 0.00 41.75 2.66
340 341 9.058174 GCTTCTAGAGACTTTTTAGGAACTTTT 57.942 33.333 0.00 0.00 41.75 2.27
352 353 9.901172 TTTTTAGGAACTTTTTCTAGTCTCTGT 57.099 29.630 0.00 0.00 41.75 3.41
353 354 8.888579 TTTAGGAACTTTTTCTAGTCTCTGTG 57.111 34.615 0.00 0.00 41.75 3.66
354 355 6.732896 AGGAACTTTTTCTAGTCTCTGTGA 57.267 37.500 0.00 0.00 27.25 3.58
355 356 6.517605 AGGAACTTTTTCTAGTCTCTGTGAC 58.482 40.000 1.75 1.75 40.62 3.67
357 358 7.506261 AGGAACTTTTTCTAGTCTCTGTGACTA 59.494 37.037 16.20 16.20 46.74 2.59
367 368 5.216614 GTCTCTGTGACTAAAAAGTCCCT 57.783 43.478 3.25 0.00 42.21 4.20
368 369 4.991687 GTCTCTGTGACTAAAAAGTCCCTG 59.008 45.833 3.25 0.00 42.21 4.45
369 370 4.899457 TCTCTGTGACTAAAAAGTCCCTGA 59.101 41.667 3.25 1.24 37.99 3.86
370 371 5.365605 TCTCTGTGACTAAAAAGTCCCTGAA 59.634 40.000 3.25 0.00 37.99 3.02
371 372 5.365619 TCTGTGACTAAAAAGTCCCTGAAC 58.634 41.667 3.25 0.00 37.99 3.18
372 373 4.457466 TGTGACTAAAAAGTCCCTGAACC 58.543 43.478 3.25 0.00 37.99 3.62
373 374 4.080243 TGTGACTAAAAAGTCCCTGAACCA 60.080 41.667 3.25 0.00 37.99 3.67
374 375 4.885325 GTGACTAAAAAGTCCCTGAACCAA 59.115 41.667 3.25 0.00 37.99 3.67
375 376 5.358725 GTGACTAAAAAGTCCCTGAACCAAA 59.641 40.000 3.25 0.00 37.99 3.28
376 377 5.358725 TGACTAAAAAGTCCCTGAACCAAAC 59.641 40.000 3.25 0.00 37.99 2.93
377 378 5.265989 ACTAAAAAGTCCCTGAACCAAACA 58.734 37.500 0.00 0.00 0.00 2.83
378 379 4.465632 AAAAAGTCCCTGAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
379 380 2.067365 AAGTCCCTGAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
380 381 0.185175 AGTCCCTGAACCAAACACCC 59.815 55.000 0.00 0.00 0.00 4.61
381 382 0.826256 GTCCCTGAACCAAACACCCC 60.826 60.000 0.00 0.00 0.00 4.95
382 383 1.533033 CCCTGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
398 399 1.450312 CCCTCATTCTCCGGCACAC 60.450 63.158 0.00 0.00 0.00 3.82
571 589 5.420409 GCATGCTTTGGTTACTAGAGTACT 58.580 41.667 11.37 0.00 0.00 2.73
572 590 6.570692 GCATGCTTTGGTTACTAGAGTACTA 58.429 40.000 11.37 0.00 0.00 1.82
614 632 8.372459 TCTTGCTGTTTCCTAGTACTAATTTCA 58.628 33.333 3.76 0.26 0.00 2.69
792 813 3.364441 GACACATGGCAGCCGCAA 61.364 61.111 7.03 0.00 41.24 4.85
824 845 9.545611 CCAGAAATAAAAATGCATTTAAAGCAC 57.454 29.630 24.35 14.42 45.95 4.40
898 919 0.323542 GTCCGTTCCTCTCCTCTCCA 60.324 60.000 0.00 0.00 0.00 3.86
905 926 1.847737 TCCTCTCCTCTCCAGTACTCC 59.152 57.143 0.00 0.00 0.00 3.85
996 1020 2.529389 ACTCCACACTCCACCCCC 60.529 66.667 0.00 0.00 0.00 5.40
1016 1044 3.934962 GATGCCGCTCCTCCTCCC 61.935 72.222 0.00 0.00 0.00 4.30
1192 1220 4.367023 TCTTCGACGCCAACCCGG 62.367 66.667 0.00 0.00 38.11 5.73
1531 2262 4.424711 GCATCCCCTCCAACGCCA 62.425 66.667 0.00 0.00 0.00 5.69
1532 2263 2.124570 CATCCCCTCCAACGCCAG 60.125 66.667 0.00 0.00 0.00 4.85
1926 2657 1.303561 GCTGATGCCCAACAGGACA 60.304 57.895 7.51 0.00 38.24 4.02
1977 2708 1.152830 GAACCAGAAACCAGGGCCA 59.847 57.895 6.18 0.00 0.00 5.36
2040 2771 1.023513 CCGTCTACGACCTCGGACTT 61.024 60.000 3.65 0.00 44.86 3.01
2159 2909 2.103094 GCTGGGGCATAAAATCCTTTCC 59.897 50.000 0.00 0.00 38.54 3.13
2165 2927 6.068735 TGGGGCATAAAATCCTTTCCTTACTA 60.069 38.462 0.00 0.00 0.00 1.82
2166 2928 6.490381 GGGGCATAAAATCCTTTCCTTACTAG 59.510 42.308 0.00 0.00 0.00 2.57
2167 2929 7.061054 GGGCATAAAATCCTTTCCTTACTAGT 58.939 38.462 0.00 0.00 0.00 2.57
2168 2930 8.215736 GGGCATAAAATCCTTTCCTTACTAGTA 58.784 37.037 0.00 0.00 0.00 1.82
2169 2931 9.794719 GGCATAAAATCCTTTCCTTACTAGTAT 57.205 33.333 2.79 0.00 0.00 2.12
2196 2958 6.440436 TGATAATGATTGGTTGATTGCATCG 58.560 36.000 0.00 0.00 0.00 3.84
2197 2959 4.724074 AATGATTGGTTGATTGCATCGT 57.276 36.364 0.00 0.00 0.00 3.73
2211 2973 4.811555 TGCATCGTATAATTTGTCTGGC 57.188 40.909 0.00 0.00 0.00 4.85
2222 2985 0.320374 TTGTCTGGCCCTGTCTTACG 59.680 55.000 0.00 0.00 0.00 3.18
2260 3023 2.812358 ATTTCTTTGGGAAACGTGGC 57.188 45.000 0.00 0.00 45.29 5.01
2270 3033 2.554893 GGGAAACGTGGCTTCAATTGTA 59.445 45.455 5.13 0.00 0.00 2.41
2274 3037 4.685169 AACGTGGCTTCAATTGTATCAG 57.315 40.909 5.13 0.00 0.00 2.90
2293 3060 9.613428 TGTATCAGATTCAGTATTTTACTTGGG 57.387 33.333 0.00 0.00 36.76 4.12
2294 3061 9.832445 GTATCAGATTCAGTATTTTACTTGGGA 57.168 33.333 0.00 0.00 36.76 4.37
2295 3062 8.970859 ATCAGATTCAGTATTTTACTTGGGAG 57.029 34.615 0.00 0.00 36.76 4.30
2296 3063 8.146053 TCAGATTCAGTATTTTACTTGGGAGA 57.854 34.615 0.00 0.00 36.76 3.71
2335 3112 3.775261 TGAACCCAACCCAGTAGTAAC 57.225 47.619 0.00 0.00 0.00 2.50
2345 3122 6.349280 CCAACCCAGTAGTAACAATGAACATG 60.349 42.308 0.00 0.00 0.00 3.21
2354 3131 1.952990 ACAATGAACATGCCGTGTCAA 59.047 42.857 0.00 0.00 41.14 3.18
2363 3140 3.430862 CCGTGTCAACCATGGGCG 61.431 66.667 18.09 6.51 45.20 6.13
2367 3144 2.755469 GTCAACCATGGGCGGCAT 60.755 61.111 18.09 0.00 0.00 4.40
2448 3248 4.037222 AGGTGATGTATGTGTATGGACCA 58.963 43.478 0.00 0.00 0.00 4.02
2469 3269 2.237392 AGCTTCTTCTGGAAACGGCTAT 59.763 45.455 0.00 0.00 33.23 2.97
2470 3270 3.451178 AGCTTCTTCTGGAAACGGCTATA 59.549 43.478 0.00 0.00 33.23 1.31
2582 3382 0.443869 CAGGCGTGTGTTGATAGCAC 59.556 55.000 0.00 0.00 37.37 4.40
2583 3383 0.321671 AGGCGTGTGTTGATAGCACT 59.678 50.000 0.00 0.00 37.70 4.40
2599 3399 0.946221 CACTCTTGGACACGTCTGGC 60.946 60.000 0.00 0.00 0.00 4.85
2600 3400 1.367471 CTCTTGGACACGTCTGGCA 59.633 57.895 0.00 0.00 0.00 4.92
2601 3401 0.668706 CTCTTGGACACGTCTGGCAG 60.669 60.000 8.58 8.58 0.00 4.85
2617 3417 1.631072 CAGTATTTCTGGACGCGCG 59.369 57.895 30.96 30.96 40.23 6.86
2650 3450 1.876156 GACCACTGCCAAAACTCTGAG 59.124 52.381 2.45 2.45 0.00 3.35
2803 3624 5.715070 AGTTTACAGAGTGAGTACATGCTC 58.285 41.667 0.00 0.00 36.12 4.26
2807 3649 4.502016 ACAGAGTGAGTACATGCTCATTG 58.498 43.478 6.35 7.99 45.81 2.82
2909 3754 0.884704 CCGGTTGTCAACACTCCTGG 60.885 60.000 17.29 1.09 0.00 4.45
3022 3880 6.373186 AACCTTGAAACTTTTCTAACGGAG 57.627 37.500 3.48 0.00 38.02 4.63
3095 3953 5.695363 GTCTCAAGTTTTAACTAGAAGCCGT 59.305 40.000 0.00 0.00 38.57 5.68
3107 3965 1.275573 AGAAGCCGTACCTTTGGACTC 59.724 52.381 0.00 0.00 0.00 3.36
3108 3966 0.037605 AAGCCGTACCTTTGGACTCG 60.038 55.000 0.00 0.00 0.00 4.18
3109 3967 2.098831 GCCGTACCTTTGGACTCGC 61.099 63.158 0.00 0.00 0.00 5.03
3110 3968 1.590147 CCGTACCTTTGGACTCGCT 59.410 57.895 0.00 0.00 0.00 4.93
3111 3969 0.813184 CCGTACCTTTGGACTCGCTA 59.187 55.000 0.00 0.00 0.00 4.26
3112 3970 1.407979 CCGTACCTTTGGACTCGCTAT 59.592 52.381 0.00 0.00 0.00 2.97
3113 3971 2.543238 CCGTACCTTTGGACTCGCTATC 60.543 54.545 0.00 0.00 0.00 2.08
3114 3972 2.358267 CGTACCTTTGGACTCGCTATCT 59.642 50.000 0.00 0.00 0.00 1.98
3115 3973 3.181489 CGTACCTTTGGACTCGCTATCTT 60.181 47.826 0.00 0.00 0.00 2.40
3116 3974 3.983044 ACCTTTGGACTCGCTATCTTT 57.017 42.857 0.00 0.00 0.00 2.52
3117 3975 4.287766 ACCTTTGGACTCGCTATCTTTT 57.712 40.909 0.00 0.00 0.00 2.27
3118 3976 4.652822 ACCTTTGGACTCGCTATCTTTTT 58.347 39.130 0.00 0.00 0.00 1.94
3180 4042 3.323115 TGAGATGCCTGCCTATTGTCTAG 59.677 47.826 0.00 0.00 0.00 2.43
3181 4043 3.312890 AGATGCCTGCCTATTGTCTAGT 58.687 45.455 0.00 0.00 0.00 2.57
3182 4044 4.483950 AGATGCCTGCCTATTGTCTAGTA 58.516 43.478 0.00 0.00 0.00 1.82
3183 4045 4.282195 AGATGCCTGCCTATTGTCTAGTAC 59.718 45.833 0.00 0.00 0.00 2.73
3184 4046 3.643237 TGCCTGCCTATTGTCTAGTACT 58.357 45.455 0.00 0.00 0.00 2.73
3185 4047 4.800023 TGCCTGCCTATTGTCTAGTACTA 58.200 43.478 1.89 1.89 0.00 1.82
3278 4143 0.690192 TTGGCGTCATCTCCTTTCCA 59.310 50.000 0.00 0.00 0.00 3.53
3280 4145 2.115427 TGGCGTCATCTCCTTTCCATA 58.885 47.619 0.00 0.00 0.00 2.74
3314 4179 1.596260 CTACGCATGCATCTGTTCTGG 59.404 52.381 19.57 0.00 0.00 3.86
3360 4225 0.469917 CATGTGGATTAGGCCCTCGT 59.530 55.000 0.00 0.00 0.00 4.18
3371 4236 1.486726 AGGCCCTCGTATCAAAGGAAG 59.513 52.381 0.00 0.00 34.35 3.46
3372 4237 1.475213 GGCCCTCGTATCAAAGGAAGG 60.475 57.143 0.00 0.00 34.35 3.46
3373 4238 1.485066 GCCCTCGTATCAAAGGAAGGA 59.515 52.381 0.00 0.00 34.35 3.36
3374 4239 2.093128 GCCCTCGTATCAAAGGAAGGAA 60.093 50.000 0.00 0.00 34.35 3.36
3375 4240 3.798202 CCCTCGTATCAAAGGAAGGAAG 58.202 50.000 0.00 0.00 34.35 3.46
3376 4241 3.198872 CCTCGTATCAAAGGAAGGAAGC 58.801 50.000 0.00 0.00 34.35 3.86
3434 4299 4.744570 CTTAGCGAAAGTAGACCATGTGA 58.255 43.478 0.00 0.00 0.00 3.58
3450 4315 1.052617 GTGAAGGAGAGGGGGCTATC 58.947 60.000 0.00 0.00 0.00 2.08
3453 4318 0.644937 AAGGAGAGGGGGCTATCTGT 59.355 55.000 0.00 0.00 0.00 3.41
3555 4423 2.672996 CCCTGCTTTGGACGGTGG 60.673 66.667 0.00 0.00 0.00 4.61
3582 4450 0.807496 GCCCAGAGAACATGTGCTTC 59.193 55.000 8.06 1.49 0.00 3.86
3601 4469 2.479837 TCGTTGTCAAAGCACCACTAG 58.520 47.619 0.00 0.00 0.00 2.57
3602 4470 1.069906 CGTTGTCAAAGCACCACTAGC 60.070 52.381 0.00 0.00 0.00 3.42
3621 4489 0.674895 CCTGCACAGCCTTCCAGTAC 60.675 60.000 0.00 0.00 0.00 2.73
3643 4511 5.829829 ACGGCTGTCTAAAGTATTACTAGC 58.170 41.667 0.00 1.49 0.00 3.42
3647 4515 8.080417 CGGCTGTCTAAAGTATTACTAGCATAA 58.920 37.037 13.34 0.00 0.00 1.90
3649 4517 9.968870 GCTGTCTAAAGTATTACTAGCATAACT 57.031 33.333 8.48 0.00 0.00 2.24
3763 4631 5.126061 ACTTGCTGTTTATTTATCCTGGCAG 59.874 40.000 7.75 7.75 0.00 4.85
3766 4634 6.184068 TGCTGTTTATTTATCCTGGCAGTTA 58.816 36.000 14.43 1.05 0.00 2.24
3783 4651 5.926542 GGCAGTTATGATGCTTAGATTCGTA 59.073 40.000 0.00 0.00 43.35 3.43
3819 4687 3.045601 CCTGACTTACCAGGTGTCTTG 57.954 52.381 0.76 0.22 46.62 3.02
3821 4689 3.393800 CTGACTTACCAGGTGTCTTGTG 58.606 50.000 0.76 0.00 0.00 3.33
3823 4691 3.199071 TGACTTACCAGGTGTCTTGTGTT 59.801 43.478 0.76 0.00 0.00 3.32
3824 4692 3.541632 ACTTACCAGGTGTCTTGTGTTG 58.458 45.455 0.76 0.00 0.00 3.33
3863 4734 0.611896 CTCCAACCCCTTCGCCAAAT 60.612 55.000 0.00 0.00 0.00 2.32
3968 4839 4.655963 ACCTGCAGAACAACATCAACTAT 58.344 39.130 17.39 0.00 0.00 2.12
4032 4903 2.282745 GCTTCAGCCCCAACAGCT 60.283 61.111 0.00 0.00 42.70 4.24
4146 5017 2.125106 CCAGCGACCCCAGTAAGC 60.125 66.667 0.00 0.00 0.00 3.09
4162 5033 6.456501 CCAGTAAGCCCATATACTAACAGTC 58.543 44.000 0.00 0.00 31.35 3.51
4168 5039 5.069251 AGCCCATATACTAACAGTCTGTGAC 59.931 44.000 6.18 0.00 0.00 3.67
4189 5060 1.165907 TTTCTGAACCTGGCTGCGTG 61.166 55.000 0.00 0.00 0.00 5.34
4190 5061 2.281070 CTGAACCTGGCTGCGTGT 60.281 61.111 0.00 0.00 0.00 4.49
4191 5062 1.005037 CTGAACCTGGCTGCGTGTA 60.005 57.895 0.00 0.00 0.00 2.90
4192 5063 1.291877 CTGAACCTGGCTGCGTGTAC 61.292 60.000 0.00 0.00 0.00 2.90
4195 5066 1.808531 AACCTGGCTGCGTGTACGTA 61.809 55.000 6.27 0.36 42.22 3.57
4226 5097 2.012902 GCTGATGATGCCACCCTTGC 62.013 60.000 0.00 0.00 0.00 4.01
4503 5377 0.735978 CGGCTGTAGCGTGATGTTGA 60.736 55.000 0.00 0.00 43.26 3.18
4520 5394 0.451383 TGAGCCGTATTGCATTGCAC 59.549 50.000 11.66 0.00 38.71 4.57
4567 5441 0.109179 TGCGCTTGTCATTGCATTCC 60.109 50.000 9.73 0.00 31.31 3.01
4568 5442 0.109179 GCGCTTGTCATTGCATTCCA 60.109 50.000 0.00 0.00 0.00 3.53
4569 5443 1.470285 GCGCTTGTCATTGCATTCCAT 60.470 47.619 0.00 0.00 0.00 3.41
4570 5444 2.190161 CGCTTGTCATTGCATTCCATG 58.810 47.619 0.00 0.00 0.00 3.66
4596 5470 8.058328 GCAGAAAATACAAGAAACAAAAAGAGC 58.942 33.333 0.00 0.00 0.00 4.09
4615 5489 0.873054 CAAGCCTTGCTGTGTCTCTG 59.127 55.000 0.00 0.00 39.62 3.35
4617 5491 0.250209 AGCCTTGCTGTGTCTCTGTG 60.250 55.000 0.00 0.00 37.57 3.66
4625 5499 1.600957 CTGTGTCTCTGTGCTTTGTGG 59.399 52.381 0.00 0.00 0.00 4.17
4633 5507 4.402155 TCTCTGTGCTTTGTGGTCATTTTT 59.598 37.500 0.00 0.00 0.00 1.94
4637 5511 4.051237 GTGCTTTGTGGTCATTTTTCTCC 58.949 43.478 0.00 0.00 0.00 3.71
4669 5543 8.996651 TCCTAGAATCTACATACAGAACATGA 57.003 34.615 0.00 0.00 0.00 3.07
4672 5546 6.821388 AGAATCTACATACAGAACATGACCC 58.179 40.000 0.00 0.00 0.00 4.46
4749 5623 2.869801 TGTGTCTGTTTGGATTCGTGTC 59.130 45.455 0.00 0.00 0.00 3.67
4752 5626 2.155155 GTCTGTTTGGATTCGTGTCGAC 59.845 50.000 9.11 9.11 34.89 4.20
4766 5645 1.194495 GTCGACGACAAGAAACACGT 58.806 50.000 22.66 0.00 41.57 4.49
4807 5686 2.287308 TGTCCGATTTTTCGTTTGCCAG 60.287 45.455 0.00 0.00 0.00 4.85
4832 5711 5.332743 ACTCATTTCTGGCCCAAATTTAGA 58.667 37.500 16.30 3.78 0.00 2.10
4834 5713 5.332743 TCATTTCTGGCCCAAATTTAGACT 58.667 37.500 0.00 0.00 0.00 3.24
4848 5727 2.010145 TAGACTGAGTTTGCATCCGC 57.990 50.000 0.00 0.00 39.24 5.54
4873 5752 4.824515 CCCTCGACGCCCTCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
4882 5761 2.896443 CCCTCTCCTTGTCCTCGC 59.104 66.667 0.00 0.00 0.00 5.03
4884 5763 2.726351 CCTCTCCTTGTCCTCGCCC 61.726 68.421 0.00 0.00 0.00 6.13
4905 5784 0.106708 CCCGTATGTGGCACTAGCAT 59.893 55.000 19.83 6.37 44.61 3.79
4923 5802 1.420514 CATGCCATCACCATCTCTCCT 59.579 52.381 0.00 0.00 0.00 3.69
4932 5811 3.319405 TCACCATCTCTCCTAATTCGCTC 59.681 47.826 0.00 0.00 0.00 5.03
4938 5817 5.000012 TCTCTCCTAATTCGCTCTCAAAC 58.000 43.478 0.00 0.00 0.00 2.93
4940 5819 3.769844 TCTCCTAATTCGCTCTCAAACCT 59.230 43.478 0.00 0.00 0.00 3.50
4952 5831 1.966451 CAAACCTTTCCGCGCTCCT 60.966 57.895 5.56 0.00 0.00 3.69
5027 5906 2.919043 GCCATGGTCCCGAGGAAT 59.081 61.111 14.67 0.00 31.38 3.01
5028 5907 1.227973 GCCATGGTCCCGAGGAATC 60.228 63.158 14.67 0.00 31.38 2.52
5030 5909 1.069765 CATGGTCCCGAGGAATCCG 59.930 63.158 0.00 0.00 31.38 4.18
5054 5933 4.771127 GTGCACACCTCGAAGGAA 57.229 55.556 13.17 0.00 37.67 3.36
5145 6024 4.069232 CGGAGAGCGTTGCCCTCA 62.069 66.667 2.76 0.00 0.00 3.86
5146 6025 2.586792 GGAGAGCGTTGCCCTCAT 59.413 61.111 2.76 0.00 0.00 2.90
5171 6050 3.050275 GCCACGCAACAGGTCCTC 61.050 66.667 0.00 0.00 0.00 3.71
5213 6092 4.421479 CTTCTCGTCGGCACCGCT 62.421 66.667 3.66 0.00 39.59 5.52
5214 6093 4.717629 TTCTCGTCGGCACCGCTG 62.718 66.667 3.66 0.00 39.59 5.18
5237 6116 1.671054 CAACACGGGCTCATCGGTT 60.671 57.895 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.448438 TTTTGCTTATGTGACATCTATGTTACT 57.552 29.630 16.14 7.15 44.65 2.24
11 12 9.853555 CACCTTAATATTTTTGCTTATGTGACA 57.146 29.630 0.00 0.00 0.00 3.58
14 15 9.853555 TGTCACCTTAATATTTTTGCTTATGTG 57.146 29.630 0.00 0.00 0.00 3.21
20 21 9.297037 ACTACTTGTCACCTTAATATTTTTGCT 57.703 29.630 0.00 0.00 0.00 3.91
21 22 9.908152 AACTACTTGTCACCTTAATATTTTTGC 57.092 29.630 0.00 0.00 0.00 3.68
30 31 9.706691 CTCTTCATTAACTACTTGTCACCTTAA 57.293 33.333 0.00 0.00 0.00 1.85
31 32 9.085645 TCTCTTCATTAACTACTTGTCACCTTA 57.914 33.333 0.00 0.00 0.00 2.69
32 33 7.963532 TCTCTTCATTAACTACTTGTCACCTT 58.036 34.615 0.00 0.00 0.00 3.50
33 34 7.451877 TCTCTCTTCATTAACTACTTGTCACCT 59.548 37.037 0.00 0.00 0.00 4.00
34 35 7.603651 TCTCTCTTCATTAACTACTTGTCACC 58.396 38.462 0.00 0.00 0.00 4.02
35 36 8.516234 TCTCTCTCTTCATTAACTACTTGTCAC 58.484 37.037 0.00 0.00 0.00 3.67
36 37 8.516234 GTCTCTCTCTTCATTAACTACTTGTCA 58.484 37.037 0.00 0.00 0.00 3.58
37 38 8.516234 TGTCTCTCTCTTCATTAACTACTTGTC 58.484 37.037 0.00 0.00 0.00 3.18
38 39 8.410673 TGTCTCTCTCTTCATTAACTACTTGT 57.589 34.615 0.00 0.00 0.00 3.16
39 40 9.698309 TTTGTCTCTCTCTTCATTAACTACTTG 57.302 33.333 0.00 0.00 0.00 3.16
49 50 9.660180 GGTTACTTTATTTGTCTCTCTCTTCAT 57.340 33.333 0.00 0.00 0.00 2.57
50 51 8.871125 AGGTTACTTTATTTGTCTCTCTCTTCA 58.129 33.333 0.00 0.00 0.00 3.02
72 73 9.371136 CGCTATGTGATGATAACATATTAGGTT 57.629 33.333 3.15 0.00 39.23 3.50
73 74 7.492669 GCGCTATGTGATGATAACATATTAGGT 59.507 37.037 3.15 0.00 39.23 3.08
74 75 7.708322 AGCGCTATGTGATGATAACATATTAGG 59.292 37.037 8.99 0.00 39.23 2.69
75 76 8.640091 AGCGCTATGTGATGATAACATATTAG 57.360 34.615 8.99 0.00 39.23 1.73
76 77 9.435688 AAAGCGCTATGTGATGATAACATATTA 57.564 29.630 12.05 0.00 39.23 0.98
77 78 7.912056 AAGCGCTATGTGATGATAACATATT 57.088 32.000 12.05 0.00 39.23 1.28
78 79 7.912056 AAAGCGCTATGTGATGATAACATAT 57.088 32.000 12.05 0.00 39.23 1.78
79 80 7.440856 TGAAAAGCGCTATGTGATGATAACATA 59.559 33.333 12.05 2.75 39.05 2.29
80 81 6.260714 TGAAAAGCGCTATGTGATGATAACAT 59.739 34.615 12.05 0.33 41.14 2.71
81 82 5.584251 TGAAAAGCGCTATGTGATGATAACA 59.416 36.000 12.05 0.00 0.00 2.41
82 83 6.048073 TGAAAAGCGCTATGTGATGATAAC 57.952 37.500 12.05 0.00 0.00 1.89
83 84 6.676237 TTGAAAAGCGCTATGTGATGATAA 57.324 33.333 12.05 0.00 0.00 1.75
84 85 6.866010 ATTGAAAAGCGCTATGTGATGATA 57.134 33.333 12.05 0.00 0.00 2.15
85 86 5.762825 ATTGAAAAGCGCTATGTGATGAT 57.237 34.783 12.05 0.00 0.00 2.45
86 87 5.584251 TGTATTGAAAAGCGCTATGTGATGA 59.416 36.000 12.05 0.00 0.00 2.92
87 88 5.809464 TGTATTGAAAAGCGCTATGTGATG 58.191 37.500 12.05 0.00 0.00 3.07
88 89 6.435430 TTGTATTGAAAAGCGCTATGTGAT 57.565 33.333 12.05 5.51 0.00 3.06
89 90 5.871465 TTGTATTGAAAAGCGCTATGTGA 57.129 34.783 12.05 0.00 0.00 3.58
90 91 6.926280 TTTTGTATTGAAAAGCGCTATGTG 57.074 33.333 12.05 0.00 0.00 3.21
91 92 7.312154 TCATTTTGTATTGAAAAGCGCTATGT 58.688 30.769 12.05 0.00 0.00 2.29
92 93 7.485913 ACTCATTTTGTATTGAAAAGCGCTATG 59.514 33.333 12.05 5.94 0.00 2.23
93 94 7.538575 ACTCATTTTGTATTGAAAAGCGCTAT 58.461 30.769 12.05 1.76 0.00 2.97
94 95 6.908825 ACTCATTTTGTATTGAAAAGCGCTA 58.091 32.000 12.05 0.00 0.00 4.26
95 96 5.772521 ACTCATTTTGTATTGAAAAGCGCT 58.227 33.333 2.64 2.64 0.00 5.92
96 97 5.858581 AGACTCATTTTGTATTGAAAAGCGC 59.141 36.000 0.00 0.00 0.00 5.92
97 98 8.015087 TGTAGACTCATTTTGTATTGAAAAGCG 58.985 33.333 0.00 0.00 0.00 4.68
98 99 9.677567 TTGTAGACTCATTTTGTATTGAAAAGC 57.322 29.630 0.00 0.00 0.00 3.51
102 103 9.554395 TGTCTTGTAGACTCATTTTGTATTGAA 57.446 29.630 8.18 0.00 45.27 2.69
103 104 9.554395 TTGTCTTGTAGACTCATTTTGTATTGA 57.446 29.630 8.18 0.00 45.27 2.57
113 114 9.890629 TGCTTATTTATTGTCTTGTAGACTCAT 57.109 29.630 8.18 3.68 45.27 2.90
114 115 9.890629 ATGCTTATTTATTGTCTTGTAGACTCA 57.109 29.630 8.18 0.00 45.27 3.41
116 117 9.672673 ACATGCTTATTTATTGTCTTGTAGACT 57.327 29.630 8.18 0.00 45.27 3.24
117 118 9.708222 CACATGCTTATTTATTGTCTTGTAGAC 57.292 33.333 0.00 0.00 45.26 2.59
118 119 9.448438 ACACATGCTTATTTATTGTCTTGTAGA 57.552 29.630 0.00 0.00 0.00 2.59
145 146 8.764558 TGGGAAGTGTTATATGTGTAGTAACAT 58.235 33.333 0.00 0.00 43.21 2.71
146 147 8.036575 GTGGGAAGTGTTATATGTGTAGTAACA 58.963 37.037 0.00 0.00 36.34 2.41
147 148 8.255905 AGTGGGAAGTGTTATATGTGTAGTAAC 58.744 37.037 0.00 0.00 0.00 2.50
148 149 8.370266 AGTGGGAAGTGTTATATGTGTAGTAA 57.630 34.615 0.00 0.00 0.00 2.24
149 150 7.966339 AGTGGGAAGTGTTATATGTGTAGTA 57.034 36.000 0.00 0.00 0.00 1.82
150 151 6.869206 AGTGGGAAGTGTTATATGTGTAGT 57.131 37.500 0.00 0.00 0.00 2.73
153 154 8.429641 CCTTATAGTGGGAAGTGTTATATGTGT 58.570 37.037 0.00 0.00 0.00 3.72
154 155 8.647796 TCCTTATAGTGGGAAGTGTTATATGTG 58.352 37.037 0.00 0.00 0.00 3.21
155 156 8.792830 TCCTTATAGTGGGAAGTGTTATATGT 57.207 34.615 0.00 0.00 0.00 2.29
160 161 9.940974 TTACTATCCTTATAGTGGGAAGTGTTA 57.059 33.333 8.04 0.00 46.28 2.41
161 162 8.702819 GTTACTATCCTTATAGTGGGAAGTGTT 58.297 37.037 8.04 0.00 46.28 3.32
162 163 7.842743 TGTTACTATCCTTATAGTGGGAAGTGT 59.157 37.037 8.04 0.00 46.28 3.55
163 164 8.246430 TGTTACTATCCTTATAGTGGGAAGTG 57.754 38.462 8.04 0.00 46.28 3.16
167 168 9.976776 CTCTATGTTACTATCCTTATAGTGGGA 57.023 37.037 8.04 0.00 46.28 4.37
168 169 9.756571 ACTCTATGTTACTATCCTTATAGTGGG 57.243 37.037 8.04 0.00 46.28 4.61
176 177 9.844257 ACGTTACTACTCTATGTTACTATCCTT 57.156 33.333 0.00 0.00 0.00 3.36
181 182 9.546428 TGCATACGTTACTACTCTATGTTACTA 57.454 33.333 0.00 0.00 0.00 1.82
182 183 8.442632 TGCATACGTTACTACTCTATGTTACT 57.557 34.615 0.00 0.00 0.00 2.24
183 184 9.114965 CATGCATACGTTACTACTCTATGTTAC 57.885 37.037 0.00 0.00 0.00 2.50
184 185 8.843262 ACATGCATACGTTACTACTCTATGTTA 58.157 33.333 0.00 0.00 0.00 2.41
185 186 7.713750 ACATGCATACGTTACTACTCTATGTT 58.286 34.615 0.00 0.00 0.00 2.71
186 187 7.273320 ACATGCATACGTTACTACTCTATGT 57.727 36.000 0.00 0.00 0.00 2.29
187 188 9.114965 GTAACATGCATACGTTACTACTCTATG 57.885 37.037 23.15 2.51 42.62 2.23
196 197 9.167239 CTTAGAGTAGTAACATGCATACGTTAC 57.833 37.037 23.05 23.05 45.03 2.50
197 198 8.896744 ACTTAGAGTAGTAACATGCATACGTTA 58.103 33.333 0.00 1.86 0.00 3.18
198 199 7.769220 ACTTAGAGTAGTAACATGCATACGTT 58.231 34.615 0.00 2.97 0.00 3.99
199 200 7.330900 ACTTAGAGTAGTAACATGCATACGT 57.669 36.000 0.00 0.00 0.00 3.57
200 201 9.167239 GTAACTTAGAGTAGTAACATGCATACG 57.833 37.037 0.00 0.00 0.00 3.06
203 204 8.414778 GGAGTAACTTAGAGTAGTAACATGCAT 58.585 37.037 0.00 0.00 0.00 3.96
204 205 7.147949 GGGAGTAACTTAGAGTAGTAACATGCA 60.148 40.741 0.00 0.00 0.00 3.96
205 206 7.201835 GGGAGTAACTTAGAGTAGTAACATGC 58.798 42.308 0.00 0.00 0.00 4.06
206 207 7.341256 TGGGGAGTAACTTAGAGTAGTAACATG 59.659 40.741 0.00 0.00 0.00 3.21
207 208 7.341512 GTGGGGAGTAACTTAGAGTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
208 209 6.660949 GTGGGGAGTAACTTAGAGTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
209 210 6.889177 AGTGGGGAGTAACTTAGAGTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
210 211 7.037342 AGTGGGGAGTAACTTAGAGTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
211 212 6.649041 AGTGGGGAGTAACTTAGAGTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
212 213 5.533333 AGTGGGGAGTAACTTAGAGTAGT 57.467 43.478 0.00 0.00 0.00 2.73
213 214 7.229106 GTCATAGTGGGGAGTAACTTAGAGTAG 59.771 44.444 0.00 0.00 0.00 2.57
214 215 7.059156 GTCATAGTGGGGAGTAACTTAGAGTA 58.941 42.308 0.00 0.00 0.00 2.59
215 216 5.892686 GTCATAGTGGGGAGTAACTTAGAGT 59.107 44.000 0.00 0.00 0.00 3.24
216 217 5.302313 GGTCATAGTGGGGAGTAACTTAGAG 59.698 48.000 0.00 0.00 0.00 2.43
217 218 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
218 219 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
219 220 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
220 221 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
221 222 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
222 223 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
223 224 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
224 225 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
225 226 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
226 227 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
227 228 0.691078 GAGGCTGGTCATAGTGGGGA 60.691 60.000 0.00 0.00 0.00 4.81
228 229 0.982852 TGAGGCTGGTCATAGTGGGG 60.983 60.000 0.00 0.00 0.00 4.96
229 230 0.467384 CTGAGGCTGGTCATAGTGGG 59.533 60.000 0.00 0.00 0.00 4.61
230 231 0.467384 CCTGAGGCTGGTCATAGTGG 59.533 60.000 0.00 0.00 0.00 4.00
231 232 0.467384 CCCTGAGGCTGGTCATAGTG 59.533 60.000 0.00 0.00 0.00 2.74
232 233 0.692419 CCCCTGAGGCTGGTCATAGT 60.692 60.000 0.00 0.00 0.00 2.12
233 234 1.414061 CCCCCTGAGGCTGGTCATAG 61.414 65.000 0.00 0.00 0.00 2.23
234 235 1.384502 CCCCCTGAGGCTGGTCATA 60.385 63.158 0.00 0.00 0.00 2.15
235 236 2.693864 CCCCCTGAGGCTGGTCAT 60.694 66.667 0.00 0.00 0.00 3.06
236 237 4.270153 ACCCCCTGAGGCTGGTCA 62.270 66.667 5.22 0.00 0.00 4.02
237 238 3.721706 CACCCCCTGAGGCTGGTC 61.722 72.222 7.85 0.00 0.00 4.02
238 239 4.599500 ACACCCCCTGAGGCTGGT 62.599 66.667 5.22 5.22 0.00 4.00
239 240 2.845345 AAACACCCCCTGAGGCTGG 61.845 63.158 0.00 0.00 0.00 4.85
240 241 1.604593 CAAACACCCCCTGAGGCTG 60.605 63.158 0.00 0.00 0.00 4.85
241 242 2.845345 CCAAACACCCCCTGAGGCT 61.845 63.158 0.00 0.00 0.00 4.58
242 243 2.283173 CCAAACACCCCCTGAGGC 60.283 66.667 0.00 0.00 0.00 4.70
243 244 0.105709 AAACCAAACACCCCCTGAGG 60.106 55.000 0.00 0.00 0.00 3.86
244 245 2.668144 TAAACCAAACACCCCCTGAG 57.332 50.000 0.00 0.00 0.00 3.35
245 246 3.399952 TTTAAACCAAACACCCCCTGA 57.600 42.857 0.00 0.00 0.00 3.86
246 247 3.452990 ACTTTTAAACCAAACACCCCCTG 59.547 43.478 0.00 0.00 0.00 4.45
247 248 3.707611 GACTTTTAAACCAAACACCCCCT 59.292 43.478 0.00 0.00 0.00 4.79
248 249 3.181463 GGACTTTTAAACCAAACACCCCC 60.181 47.826 0.00 0.00 0.00 5.40
249 250 3.707611 AGGACTTTTAAACCAAACACCCC 59.292 43.478 0.00 0.00 0.00 4.95
250 251 5.010314 CCTAGGACTTTTAAACCAAACACCC 59.990 44.000 1.05 0.00 0.00 4.61
251 252 5.829391 TCCTAGGACTTTTAAACCAAACACC 59.171 40.000 7.62 0.00 0.00 4.16
252 253 6.732154 GTCCTAGGACTTTTAAACCAAACAC 58.268 40.000 31.12 2.21 41.57 3.32
253 254 6.947644 GTCCTAGGACTTTTAAACCAAACA 57.052 37.500 31.12 0.00 41.57 2.83
274 275 8.672823 TTTTTCTACAGGGACTAGAAAAAGTC 57.327 34.615 16.61 0.92 46.05 3.01
278 279 7.222161 GGACTTTTTCTACAGGGACTAGAAAA 58.778 38.462 0.00 8.58 43.60 2.29
279 280 6.239800 GGGACTTTTTCTACAGGGACTAGAAA 60.240 42.308 0.00 0.00 38.08 2.52
280 281 5.247792 GGGACTTTTTCTACAGGGACTAGAA 59.752 44.000 0.00 0.00 36.02 2.10
281 282 4.776308 GGGACTTTTTCTACAGGGACTAGA 59.224 45.833 0.00 0.00 36.02 2.43
282 283 4.778427 AGGGACTTTTTCTACAGGGACTAG 59.222 45.833 0.00 0.00 28.08 2.57
283 284 4.759953 AGGGACTTTTTCTACAGGGACTA 58.240 43.478 0.00 0.00 28.08 2.59
284 285 3.583526 GAGGGACTTTTTCTACAGGGACT 59.416 47.826 0.00 0.00 41.55 3.85
285 286 3.307550 GGAGGGACTTTTTCTACAGGGAC 60.308 52.174 0.00 0.00 41.55 4.46
286 287 2.910977 GGAGGGACTTTTTCTACAGGGA 59.089 50.000 0.00 0.00 41.55 4.20
287 288 2.026169 GGGAGGGACTTTTTCTACAGGG 60.026 54.545 0.00 0.00 41.55 4.45
288 289 2.354805 CGGGAGGGACTTTTTCTACAGG 60.355 54.545 0.00 0.00 41.55 4.00
289 290 2.302157 ACGGGAGGGACTTTTTCTACAG 59.698 50.000 0.00 0.00 41.55 2.74
290 291 2.332117 ACGGGAGGGACTTTTTCTACA 58.668 47.619 0.00 0.00 41.55 2.74
291 292 3.413846 AACGGGAGGGACTTTTTCTAC 57.586 47.619 0.00 0.00 41.55 2.59
292 293 3.497227 CCAAACGGGAGGGACTTTTTCTA 60.497 47.826 0.00 0.00 41.55 2.10
293 294 2.583143 CAAACGGGAGGGACTTTTTCT 58.417 47.619 0.00 0.00 41.55 2.52
294 295 1.611977 CCAAACGGGAGGGACTTTTTC 59.388 52.381 0.00 0.00 41.55 2.29
295 296 1.699730 CCAAACGGGAGGGACTTTTT 58.300 50.000 0.00 0.00 41.55 1.94
296 297 0.826256 GCCAAACGGGAGGGACTTTT 60.826 55.000 0.00 0.00 41.55 2.27
297 298 1.228459 GCCAAACGGGAGGGACTTT 60.228 57.895 0.00 0.00 41.55 2.66
298 299 1.716028 AAGCCAAACGGGAGGGACTT 61.716 55.000 0.00 0.00 41.55 3.01
300 301 1.674651 GAAGCCAAACGGGAGGGAC 60.675 63.158 0.00 0.00 40.01 4.46
301 302 0.545787 TAGAAGCCAAACGGGAGGGA 60.546 55.000 0.00 0.00 40.01 4.20
302 303 0.107654 CTAGAAGCCAAACGGGAGGG 60.108 60.000 0.00 0.00 40.01 4.30
303 304 0.902531 TCTAGAAGCCAAACGGGAGG 59.097 55.000 0.00 0.00 40.01 4.30
304 305 1.825474 TCTCTAGAAGCCAAACGGGAG 59.175 52.381 0.00 0.00 40.01 4.30
305 306 1.549170 GTCTCTAGAAGCCAAACGGGA 59.451 52.381 0.00 0.00 40.01 5.14
306 307 1.550976 AGTCTCTAGAAGCCAAACGGG 59.449 52.381 0.00 0.00 40.85 5.28
307 308 3.320673 AAGTCTCTAGAAGCCAAACGG 57.679 47.619 0.00 0.00 0.00 4.44
308 309 5.674933 AAAAAGTCTCTAGAAGCCAAACG 57.325 39.130 0.00 0.00 0.00 3.60
309 310 6.935208 TCCTAAAAAGTCTCTAGAAGCCAAAC 59.065 38.462 0.00 0.00 0.00 2.93
310 311 7.074653 TCCTAAAAAGTCTCTAGAAGCCAAA 57.925 36.000 0.00 0.00 0.00 3.28
311 312 6.681729 TCCTAAAAAGTCTCTAGAAGCCAA 57.318 37.500 0.00 0.00 0.00 4.52
312 313 6.270231 AGTTCCTAAAAAGTCTCTAGAAGCCA 59.730 38.462 0.00 0.00 0.00 4.75
313 314 6.703319 AGTTCCTAAAAAGTCTCTAGAAGCC 58.297 40.000 0.00 0.00 0.00 4.35
314 315 8.610248 AAAGTTCCTAAAAAGTCTCTAGAAGC 57.390 34.615 0.00 0.00 0.00 3.86
326 327 9.901172 ACAGAGACTAGAAAAAGTTCCTAAAAA 57.099 29.630 0.00 0.00 33.92 1.94
327 328 9.326413 CACAGAGACTAGAAAAAGTTCCTAAAA 57.674 33.333 0.00 0.00 33.92 1.52
328 329 8.701895 TCACAGAGACTAGAAAAAGTTCCTAAA 58.298 33.333 0.00 0.00 33.92 1.85
329 330 8.142551 GTCACAGAGACTAGAAAAAGTTCCTAA 58.857 37.037 0.00 0.00 44.09 2.69
330 331 7.659186 GTCACAGAGACTAGAAAAAGTTCCTA 58.341 38.462 0.00 0.00 44.09 2.94
331 332 6.517605 GTCACAGAGACTAGAAAAAGTTCCT 58.482 40.000 0.00 0.00 44.09 3.36
332 333 6.772770 GTCACAGAGACTAGAAAAAGTTCC 57.227 41.667 0.00 0.00 44.09 3.62
345 346 4.991687 CAGGGACTTTTTAGTCACAGAGAC 59.008 45.833 9.94 0.00 44.23 3.36
346 347 4.899457 TCAGGGACTTTTTAGTCACAGAGA 59.101 41.667 9.94 2.67 44.23 3.10
347 348 5.215252 TCAGGGACTTTTTAGTCACAGAG 57.785 43.478 9.94 0.55 44.23 3.35
348 349 5.365619 GTTCAGGGACTTTTTAGTCACAGA 58.634 41.667 9.94 4.65 44.23 3.41
349 350 4.515567 GGTTCAGGGACTTTTTAGTCACAG 59.484 45.833 9.94 2.35 44.23 3.66
350 351 4.080243 TGGTTCAGGGACTTTTTAGTCACA 60.080 41.667 9.94 0.00 44.23 3.58
351 352 4.457466 TGGTTCAGGGACTTTTTAGTCAC 58.543 43.478 7.52 3.69 42.25 3.67
352 353 4.781775 TGGTTCAGGGACTTTTTAGTCA 57.218 40.909 7.52 0.00 40.38 3.41
353 354 5.358725 TGTTTGGTTCAGGGACTTTTTAGTC 59.641 40.000 0.00 0.00 34.60 2.59
354 355 5.126545 GTGTTTGGTTCAGGGACTTTTTAGT 59.873 40.000 0.00 0.00 34.60 2.24
355 356 5.451381 GGTGTTTGGTTCAGGGACTTTTTAG 60.451 44.000 0.00 0.00 34.60 1.85
356 357 4.403113 GGTGTTTGGTTCAGGGACTTTTTA 59.597 41.667 0.00 0.00 34.60 1.52
357 358 3.196901 GGTGTTTGGTTCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
358 359 2.764010 GGTGTTTGGTTCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
359 360 2.384828 GGTGTTTGGTTCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
360 361 1.411074 GGGTGTTTGGTTCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
361 362 0.185175 GGGTGTTTGGTTCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
362 363 0.826256 GGGGTGTTTGGTTCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
363 364 1.539665 GGGGTGTTTGGTTCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
364 365 1.533033 GGGGGTGTTTGGTTCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
365 366 0.539669 GAGGGGGTGTTTGGTTCAGG 60.540 60.000 0.00 0.00 0.00 3.86
366 367 0.184933 TGAGGGGGTGTTTGGTTCAG 59.815 55.000 0.00 0.00 0.00 3.02
367 368 0.856982 ATGAGGGGGTGTTTGGTTCA 59.143 50.000 0.00 0.00 0.00 3.18
368 369 1.893137 GAATGAGGGGGTGTTTGGTTC 59.107 52.381 0.00 0.00 0.00 3.62
369 370 1.503347 AGAATGAGGGGGTGTTTGGTT 59.497 47.619 0.00 0.00 0.00 3.67
370 371 1.075536 GAGAATGAGGGGGTGTTTGGT 59.924 52.381 0.00 0.00 0.00 3.67
371 372 1.616994 GGAGAATGAGGGGGTGTTTGG 60.617 57.143 0.00 0.00 0.00 3.28
372 373 1.839424 GGAGAATGAGGGGGTGTTTG 58.161 55.000 0.00 0.00 0.00 2.93
373 374 0.328258 CGGAGAATGAGGGGGTGTTT 59.672 55.000 0.00 0.00 0.00 2.83
374 375 1.562672 CCGGAGAATGAGGGGGTGTT 61.563 60.000 0.00 0.00 0.00 3.32
375 376 1.995626 CCGGAGAATGAGGGGGTGT 60.996 63.158 0.00 0.00 0.00 4.16
376 377 2.911143 CCGGAGAATGAGGGGGTG 59.089 66.667 0.00 0.00 0.00 4.61
377 378 3.090532 GCCGGAGAATGAGGGGGT 61.091 66.667 5.05 0.00 0.00 4.95
378 379 3.089874 TGCCGGAGAATGAGGGGG 61.090 66.667 5.05 0.00 0.00 5.40
379 380 2.190578 GTGCCGGAGAATGAGGGG 59.809 66.667 5.05 0.00 0.00 4.79
380 381 1.450312 GTGTGCCGGAGAATGAGGG 60.450 63.158 5.05 0.00 0.00 4.30
381 382 1.450312 GGTGTGCCGGAGAATGAGG 60.450 63.158 5.05 0.00 0.00 3.86
382 383 4.208632 GGTGTGCCGGAGAATGAG 57.791 61.111 5.05 0.00 0.00 2.90
398 399 2.890474 GGCTGGTGCACGTATCGG 60.890 66.667 11.45 2.87 41.91 4.18
406 407 3.814625 TGAATATTATTCGGCTGGTGCA 58.185 40.909 10.94 0.00 41.91 4.57
571 589 7.124052 ACAGCAAGAAAGAGGGTAGTATACTA 58.876 38.462 8.59 8.59 42.51 1.82
572 590 5.958987 ACAGCAAGAAAGAGGGTAGTATACT 59.041 40.000 10.87 10.87 42.51 2.12
573 591 6.223351 ACAGCAAGAAAGAGGGTAGTATAC 57.777 41.667 0.00 0.00 42.04 1.47
574 592 6.869206 AACAGCAAGAAAGAGGGTAGTATA 57.131 37.500 0.00 0.00 0.00 1.47
575 593 5.763876 AACAGCAAGAAAGAGGGTAGTAT 57.236 39.130 0.00 0.00 0.00 2.12
576 594 5.512576 GGAAACAGCAAGAAAGAGGGTAGTA 60.513 44.000 0.00 0.00 0.00 1.82
577 595 4.390264 GAAACAGCAAGAAAGAGGGTAGT 58.610 43.478 0.00 0.00 0.00 2.73
578 596 3.753797 GGAAACAGCAAGAAAGAGGGTAG 59.246 47.826 0.00 0.00 0.00 3.18
614 632 4.734398 TGCACCATTTCTCAAAAGTGTT 57.266 36.364 0.00 0.00 33.62 3.32
700 721 5.643777 CCCACGAGTTCACTATCTTTCATTT 59.356 40.000 0.00 0.00 0.00 2.32
755 776 6.199531 TGTGTCACTGTCTTTTTCATACGTAC 59.800 38.462 0.00 0.00 0.00 3.67
756 777 6.274579 TGTGTCACTGTCTTTTTCATACGTA 58.725 36.000 4.27 0.00 0.00 3.57
757 778 5.113383 TGTGTCACTGTCTTTTTCATACGT 58.887 37.500 4.27 0.00 0.00 3.57
758 779 5.651172 TGTGTCACTGTCTTTTTCATACG 57.349 39.130 4.27 0.00 0.00 3.06
759 780 6.373779 CCATGTGTCACTGTCTTTTTCATAC 58.626 40.000 4.27 0.00 0.00 2.39
792 813 7.748691 AATGCATTTTTATTTCTGGCTTTGT 57.251 28.000 5.99 0.00 0.00 2.83
823 844 7.502561 GCCATTACAGTATTCTTATTCCCTTGT 59.497 37.037 0.00 0.00 0.00 3.16
824 845 7.040409 GGCCATTACAGTATTCTTATTCCCTTG 60.040 40.741 0.00 0.00 0.00 3.61
905 926 2.093106 ACTACTACTGGTTCCAGAGCG 58.907 52.381 23.45 13.34 37.49 5.03
948 972 3.300009 GTTTGAATCTGAGTTGGCAACG 58.700 45.455 23.47 10.74 42.51 4.10
1016 1044 2.108566 CGAGCAGCATGAGGAGGG 59.891 66.667 0.00 0.00 39.69 4.30
1192 1220 1.499688 GCGAAGGCGGAGATAAAGGC 61.500 60.000 0.00 0.00 38.16 4.35
1485 2216 2.792947 GGCGAGGATGCCGAGGTAA 61.793 63.158 0.00 0.00 46.75 2.85
1854 2585 1.079057 GCCCTCGTTGAAGTCCCTC 60.079 63.158 0.00 0.00 0.00 4.30
1926 2657 3.558033 GGAGAAGAGGTAGGTCTCGAAT 58.442 50.000 0.00 0.00 38.97 3.34
2169 2931 9.917129 GATGCAATCAACCAATCATTATCATTA 57.083 29.630 0.00 0.00 44.70 1.90
2170 2932 7.597369 CGATGCAATCAACCAATCATTATCATT 59.403 33.333 0.00 0.00 45.97 2.57
2171 2933 7.088272 CGATGCAATCAACCAATCATTATCAT 58.912 34.615 0.00 0.00 45.97 2.45
2172 2934 6.039605 ACGATGCAATCAACCAATCATTATCA 59.960 34.615 0.00 0.00 45.97 2.15
2173 2935 6.441274 ACGATGCAATCAACCAATCATTATC 58.559 36.000 0.00 0.00 45.97 1.75
2196 2958 4.781934 AGACAGGGCCAGACAAATTATAC 58.218 43.478 6.18 0.00 0.00 1.47
2197 2959 5.450818 AAGACAGGGCCAGACAAATTATA 57.549 39.130 6.18 0.00 0.00 0.98
2247 3010 1.698506 ATTGAAGCCACGTTTCCCAA 58.301 45.000 0.00 0.00 0.00 4.12
2248 3011 1.339610 CAATTGAAGCCACGTTTCCCA 59.660 47.619 0.00 0.00 0.00 4.37
2251 3014 5.041951 TGATACAATTGAAGCCACGTTTC 57.958 39.130 13.59 0.00 0.00 2.78
2252 3015 4.759693 TCTGATACAATTGAAGCCACGTTT 59.240 37.500 13.59 0.00 0.00 3.60
2255 3018 5.065090 TGAATCTGATACAATTGAAGCCACG 59.935 40.000 13.59 0.00 0.00 4.94
2270 3033 8.772250 TCTCCCAAGTAAAATACTGAATCTGAT 58.228 33.333 0.00 0.00 39.39 2.90
2323 3090 4.700213 GCATGTTCATTGTTACTACTGGGT 59.300 41.667 0.00 0.00 0.00 4.51
2324 3091 4.096382 GGCATGTTCATTGTTACTACTGGG 59.904 45.833 0.00 0.00 0.00 4.45
2325 3092 4.201812 CGGCATGTTCATTGTTACTACTGG 60.202 45.833 0.00 0.00 0.00 4.00
2326 3093 4.391830 ACGGCATGTTCATTGTTACTACTG 59.608 41.667 0.00 0.00 0.00 2.74
2328 3095 4.153475 ACACGGCATGTTCATTGTTACTAC 59.847 41.667 0.00 0.00 38.98 2.73
2335 3112 2.318578 GTTGACACGGCATGTTCATTG 58.681 47.619 0.00 0.00 43.56 2.82
2345 3122 3.747976 GCCCATGGTTGACACGGC 61.748 66.667 11.73 0.00 39.76 5.68
2354 3131 0.322816 GATCATATGCCGCCCATGGT 60.323 55.000 11.73 0.00 35.34 3.55
2363 3140 3.120060 GCATTCAAGTCGGATCATATGCC 60.120 47.826 0.00 0.00 33.00 4.40
2367 3144 5.070446 ACCTTAGCATTCAAGTCGGATCATA 59.930 40.000 0.00 0.00 0.00 2.15
2448 3248 0.398318 AGCCGTTTCCAGAAGAAGCT 59.602 50.000 0.00 0.00 35.40 3.74
2582 3382 0.668706 CTGCCAGACGTGTCCAAGAG 60.669 60.000 0.00 0.00 0.00 2.85
2583 3383 1.367471 CTGCCAGACGTGTCCAAGA 59.633 57.895 0.00 0.00 0.00 3.02
2599 3399 1.076533 ACGCGCGTCCAGAAATACTG 61.077 55.000 32.73 0.00 45.36 2.74
2600 3400 1.076533 CACGCGCGTCCAGAAATACT 61.077 55.000 35.61 3.31 0.00 2.12
2601 3401 1.343821 CACGCGCGTCCAGAAATAC 59.656 57.895 35.61 0.00 0.00 1.89
2650 3450 5.916883 GCAAACATGTGCATATGGATCTAAC 59.083 40.000 24.94 6.39 44.29 2.34
2803 3624 7.770366 TCTGATATCCATTCCAATTCCAATG 57.230 36.000 0.00 0.51 0.00 2.82
2891 3736 0.884704 CCCAGGAGTGTTGACAACCG 60.885 60.000 15.59 0.00 32.45 4.44
3022 3880 3.951663 TCTCCTTTGCTTTAAGGTAGCC 58.048 45.455 11.05 0.00 44.19 3.93
3095 3953 5.416271 AAAAGATAGCGAGTCCAAAGGTA 57.584 39.130 0.00 0.00 0.00 3.08
3123 3981 8.559536 CAGATAGCAAGTCTACTGTTTCAAAAA 58.440 33.333 0.00 0.00 0.00 1.94
3124 3982 7.715249 ACAGATAGCAAGTCTACTGTTTCAAAA 59.285 33.333 0.00 0.00 36.83 2.44
3125 3983 7.217200 ACAGATAGCAAGTCTACTGTTTCAAA 58.783 34.615 0.00 0.00 36.83 2.69
3126 3984 6.759272 ACAGATAGCAAGTCTACTGTTTCAA 58.241 36.000 0.00 0.00 36.83 2.69
3127 3985 6.346477 ACAGATAGCAAGTCTACTGTTTCA 57.654 37.500 0.00 0.00 36.83 2.69
3128 3986 6.647067 ACAACAGATAGCAAGTCTACTGTTTC 59.353 38.462 0.00 0.00 41.77 2.78
3129 3987 6.525629 ACAACAGATAGCAAGTCTACTGTTT 58.474 36.000 0.00 0.00 41.77 2.83
3130 3988 6.102897 ACAACAGATAGCAAGTCTACTGTT 57.897 37.500 0.00 0.00 42.91 3.16
3131 3989 5.730296 ACAACAGATAGCAAGTCTACTGT 57.270 39.130 0.00 0.00 39.28 3.55
3132 3990 7.815068 AGTAAACAACAGATAGCAAGTCTACTG 59.185 37.037 0.00 0.00 34.98 2.74
3133 3991 7.815068 CAGTAAACAACAGATAGCAAGTCTACT 59.185 37.037 0.00 0.00 0.00 2.57
3134 3992 7.813148 TCAGTAAACAACAGATAGCAAGTCTAC 59.187 37.037 0.00 0.00 0.00 2.59
3135 3993 7.892609 TCAGTAAACAACAGATAGCAAGTCTA 58.107 34.615 0.00 0.00 0.00 2.59
3136 3994 6.759272 TCAGTAAACAACAGATAGCAAGTCT 58.241 36.000 0.00 0.00 0.00 3.24
3137 3995 6.868864 TCTCAGTAAACAACAGATAGCAAGTC 59.131 38.462 0.00 0.00 0.00 3.01
3138 3996 6.759272 TCTCAGTAAACAACAGATAGCAAGT 58.241 36.000 0.00 0.00 0.00 3.16
3139 3997 7.675870 GCATCTCAGTAAACAACAGATAGCAAG 60.676 40.741 0.00 0.00 0.00 4.01
3140 3998 6.092670 GCATCTCAGTAAACAACAGATAGCAA 59.907 38.462 0.00 0.00 0.00 3.91
3180 4042 8.229137 CGCTATCCTGTCATTTACTAGTAGTAC 58.771 40.741 9.62 1.58 28.93 2.73
3181 4043 7.094890 GCGCTATCCTGTCATTTACTAGTAGTA 60.095 40.741 5.90 5.90 0.00 1.82
3182 4044 6.294065 GCGCTATCCTGTCATTTACTAGTAGT 60.294 42.308 8.14 8.14 0.00 2.73
3183 4045 6.087522 GCGCTATCCTGTCATTTACTAGTAG 58.912 44.000 0.00 0.00 0.00 2.57
3184 4046 5.533528 TGCGCTATCCTGTCATTTACTAGTA 59.466 40.000 9.73 0.00 0.00 1.82
3185 4047 4.341235 TGCGCTATCCTGTCATTTACTAGT 59.659 41.667 9.73 0.00 0.00 2.57
3278 4143 3.832490 TGCGTAGGAGTATTGGATGCTAT 59.168 43.478 0.00 0.00 0.00 2.97
3280 4145 2.039418 TGCGTAGGAGTATTGGATGCT 58.961 47.619 0.00 0.00 0.00 3.79
3314 4179 3.922240 CCACAACATTAATGCAGCTGAAC 59.078 43.478 20.43 0.12 0.00 3.18
3360 4225 3.873910 CTTCCGCTTCCTTCCTTTGATA 58.126 45.455 0.00 0.00 0.00 2.15
3371 4236 0.748005 TAATGGCTGCTTCCGCTTCC 60.748 55.000 0.00 0.00 36.97 3.46
3372 4237 0.659957 CTAATGGCTGCTTCCGCTTC 59.340 55.000 0.00 0.00 36.97 3.86
3373 4238 1.379642 GCTAATGGCTGCTTCCGCTT 61.380 55.000 0.00 0.00 38.06 4.68
3374 4239 1.821332 GCTAATGGCTGCTTCCGCT 60.821 57.895 0.00 0.00 38.06 5.52
3375 4240 2.718107 GCTAATGGCTGCTTCCGC 59.282 61.111 0.00 0.00 38.06 5.54
3434 4299 0.644937 ACAGATAGCCCCCTCTCCTT 59.355 55.000 0.00 0.00 0.00 3.36
3555 4423 4.039092 TTCTCTGGGCTGGGCTGC 62.039 66.667 0.00 0.00 0.00 5.25
3582 4450 1.069906 GCTAGTGGTGCTTTGACAACG 60.070 52.381 0.00 0.00 0.00 4.10
3602 4470 0.674895 GTACTGGAAGGCTGTGCAGG 60.675 60.000 17.42 0.00 40.99 4.85
3621 4489 5.828747 TGCTAGTAATACTTTAGACAGCCG 58.171 41.667 0.00 0.00 0.00 5.52
3763 4631 6.309251 GGAGCTACGAATCTAAGCATCATAAC 59.691 42.308 6.49 0.00 38.75 1.89
3766 4634 4.526262 AGGAGCTACGAATCTAAGCATCAT 59.474 41.667 6.49 0.00 38.75 2.45
3815 4683 3.188492 CTGCAATGCAAACAACACAAGA 58.812 40.909 9.92 0.00 38.41 3.02
3817 4685 2.928757 GACTGCAATGCAAACAACACAA 59.071 40.909 9.92 0.00 38.41 3.33
3818 4686 2.166050 AGACTGCAATGCAAACAACACA 59.834 40.909 9.92 0.00 38.41 3.72
3819 4687 2.536803 CAGACTGCAATGCAAACAACAC 59.463 45.455 9.92 0.00 38.41 3.32
3821 4689 2.536803 CACAGACTGCAATGCAAACAAC 59.463 45.455 9.92 0.00 38.41 3.32
3823 4691 1.067364 CCACAGACTGCAATGCAAACA 59.933 47.619 9.92 0.00 38.41 2.83
3824 4692 1.774639 CCACAGACTGCAATGCAAAC 58.225 50.000 9.92 6.29 38.41 2.93
3863 4734 2.821685 CTCGGATTGGGCGATGGA 59.178 61.111 0.00 0.00 0.00 3.41
4032 4903 0.894835 TACGAGGCATGAGACTGCAA 59.105 50.000 0.00 0.00 44.12 4.08
4146 5017 5.067413 ACGTCACAGACTGTTAGTATATGGG 59.933 44.000 5.04 0.00 0.00 4.00
4162 5033 1.867233 CCAGGTTCAGAAACGTCACAG 59.133 52.381 0.00 0.00 36.16 3.66
4168 5039 1.576421 GCAGCCAGGTTCAGAAACG 59.424 57.895 0.00 0.00 36.16 3.60
4189 5060 1.355916 CTCCTCCGCTGCTACGTAC 59.644 63.158 0.00 0.00 0.00 3.67
4190 5061 2.478890 GCTCCTCCGCTGCTACGTA 61.479 63.158 0.00 0.00 0.00 3.57
4191 5062 3.827898 GCTCCTCCGCTGCTACGT 61.828 66.667 0.00 0.00 0.00 3.57
4192 5063 3.522731 AGCTCCTCCGCTGCTACG 61.523 66.667 0.00 0.00 39.16 3.51
4199 5070 1.960250 GCATCATCAGCTCCTCCGC 60.960 63.158 0.00 0.00 0.00 5.54
4226 5097 1.234615 CCCCGTAACCTGCAACACAG 61.235 60.000 0.00 0.00 46.77 3.66
4503 5377 1.809207 GGTGCAATGCAATACGGCT 59.191 52.632 10.44 0.00 41.47 5.52
4520 5394 8.623310 AGGTAACGAAAAATAAATTAATGCGG 57.377 30.769 0.00 0.00 46.39 5.69
4550 5424 2.190161 CATGGAATGCAATGACAAGCG 58.810 47.619 0.00 0.00 37.62 4.68
4567 5441 9.640974 CTTTTTGTTTCTTGTATTTTCTGCATG 57.359 29.630 0.00 0.00 0.00 4.06
4568 5442 9.598517 TCTTTTTGTTTCTTGTATTTTCTGCAT 57.401 25.926 0.00 0.00 0.00 3.96
4569 5443 8.994429 TCTTTTTGTTTCTTGTATTTTCTGCA 57.006 26.923 0.00 0.00 0.00 4.41
4570 5444 8.058328 GCTCTTTTTGTTTCTTGTATTTTCTGC 58.942 33.333 0.00 0.00 0.00 4.26
4571 5445 9.086336 TGCTCTTTTTGTTTCTTGTATTTTCTG 57.914 29.630 0.00 0.00 0.00 3.02
4596 5470 0.873054 CAGAGACACAGCAAGGCTTG 59.127 55.000 22.75 22.75 36.40 4.01
4613 5487 4.685924 AGAAAAATGACCACAAAGCACAG 58.314 39.130 0.00 0.00 0.00 3.66
4615 5489 4.051237 GGAGAAAAATGACCACAAAGCAC 58.949 43.478 0.00 0.00 0.00 4.40
4617 5491 4.590850 AGGAGAAAAATGACCACAAAGC 57.409 40.909 0.00 0.00 0.00 3.51
4625 5499 8.567285 TCTAGGATTCAAAGGAGAAAAATGAC 57.433 34.615 0.00 0.00 0.00 3.06
4633 5507 8.789767 ATGTAGATTCTAGGATTCAAAGGAGA 57.210 34.615 0.00 0.00 0.00 3.71
4655 5529 3.782523 AGGATGGGTCATGTTCTGTATGT 59.217 43.478 0.00 0.00 0.00 2.29
4663 5537 2.450476 GCTTTGAGGATGGGTCATGTT 58.550 47.619 0.00 0.00 0.00 2.71
4669 5543 1.693640 CCTGGCTTTGAGGATGGGT 59.306 57.895 0.00 0.00 31.48 4.51
4672 5546 0.324091 AAGGCCTGGCTTTGAGGATG 60.324 55.000 19.68 0.00 31.48 3.51
4711 5585 1.133025 CACAAGCGGATCAAATGGGTC 59.867 52.381 0.00 0.00 0.00 4.46
4749 5623 0.228742 CCACGTGTTTCTTGTCGTCG 59.771 55.000 15.65 0.00 34.30 5.12
4752 5626 1.083657 CGCCACGTGTTTCTTGTCG 60.084 57.895 15.65 2.73 0.00 4.35
4753 5627 0.042448 GTCGCCACGTGTTTCTTGTC 60.042 55.000 15.65 0.00 0.00 3.18
4755 5629 1.083657 CGTCGCCACGTGTTTCTTG 60.084 57.895 15.65 0.00 41.42 3.02
4789 5668 1.268352 TCCTGGCAAACGAAAAATCGG 59.732 47.619 3.12 0.00 37.45 4.18
4790 5669 2.031157 AGTCCTGGCAAACGAAAAATCG 60.031 45.455 0.00 0.00 39.31 3.34
4798 5677 2.095567 CAGAAATGAGTCCTGGCAAACG 60.096 50.000 0.00 0.00 0.00 3.60
4799 5678 2.229784 CCAGAAATGAGTCCTGGCAAAC 59.770 50.000 0.00 0.00 40.69 2.93
4801 5680 2.205022 CCAGAAATGAGTCCTGGCAA 57.795 50.000 0.00 0.00 40.69 4.52
4802 5681 3.963733 CCAGAAATGAGTCCTGGCA 57.036 52.632 0.00 0.00 40.69 4.92
4807 5686 1.923356 TTTGGGCCAGAAATGAGTCC 58.077 50.000 6.23 0.00 0.00 3.85
4832 5711 2.680913 GCGCGGATGCAAACTCAGT 61.681 57.895 8.83 0.00 42.97 3.41
4834 5713 3.787676 CGCGCGGATGCAAACTCA 61.788 61.111 24.84 0.00 42.97 3.41
4902 5781 1.236628 GAGAGATGGTGATGGCATGC 58.763 55.000 9.90 9.90 0.00 4.06
4905 5784 2.477104 TAGGAGAGATGGTGATGGCA 57.523 50.000 0.00 0.00 0.00 4.92
4912 5791 3.571590 AGAGCGAATTAGGAGAGATGGT 58.428 45.455 0.00 0.00 0.00 3.55
4923 5802 3.682858 CGGAAAGGTTTGAGAGCGAATTA 59.317 43.478 0.00 0.00 0.00 1.40
4932 5811 1.497722 GAGCGCGGAAAGGTTTGAG 59.502 57.895 8.83 0.00 0.00 3.02
4940 5819 4.408821 ATGGCAGGAGCGCGGAAA 62.409 61.111 8.83 0.00 43.41 3.13
5013 5892 0.689745 TTCGGATTCCTCGGGACCAT 60.690 55.000 0.30 0.00 0.00 3.55
5020 5899 1.927895 CACCTTCTTCGGATTCCTCG 58.072 55.000 0.30 0.00 0.00 4.63
5027 5906 4.771127 GTGTGCACCTTCTTCGGA 57.229 55.556 15.69 0.00 0.00 4.55
5047 5926 1.762957 TCTAGGCATCCCTTTCCTTCG 59.237 52.381 0.00 0.00 42.87 3.79
5171 6050 0.250513 GCTCTTGGTACCCTGACAGG 59.749 60.000 15.15 15.15 34.30 4.00
5224 6103 2.745884 TTGCAACCGATGAGCCCG 60.746 61.111 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.