Multiple sequence alignment - TraesCS4B01G141600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G141600 chr4B 100.000 5677 0 0 1 5677 187016123 187021799 0.000000e+00 10484.0
1 TraesCS4B01G141600 chr4B 94.211 691 36 4 4987 5673 666672847 666672157 0.000000e+00 1051.0
2 TraesCS4B01G141600 chr4B 81.592 201 35 2 1 200 449193755 449193556 1.270000e-36 165.0
3 TraesCS4B01G141600 chr4A 92.667 3232 135 27 1630 4803 447323932 447320745 0.000000e+00 4562.0
4 TraesCS4B01G141600 chr4A 94.473 579 30 2 1024 1600 447324751 447324173 0.000000e+00 891.0
5 TraesCS4B01G141600 chr4A 89.664 387 14 6 546 919 447325467 447325094 2.390000e-128 470.0
6 TraesCS4B01G141600 chr4A 89.455 275 21 6 252 524 447325979 447325711 1.960000e-89 340.0
7 TraesCS4B01G141600 chr4A 94.624 93 5 0 4897 4989 447320748 447320656 1.650000e-30 145.0
8 TraesCS4B01G141600 chr4A 77.291 251 47 5 1 251 368575505 368575745 7.670000e-29 139.0
9 TraesCS4B01G141600 chr4A 85.047 107 16 0 1 107 678420285 678420179 6.010000e-20 110.0
10 TraesCS4B01G141600 chr4D 96.135 2406 63 17 2416 4803 122695588 122697981 0.000000e+00 3901.0
11 TraesCS4B01G141600 chr4D 90.951 2155 106 43 274 2415 122693450 122695528 0.000000e+00 2817.0
12 TraesCS4B01G141600 chr4D 94.970 676 31 3 5003 5677 84997194 84996521 0.000000e+00 1057.0
13 TraesCS4B01G141600 chr4D 97.115 104 3 0 4899 5002 122697980 122698083 5.850000e-40 176.0
14 TraesCS4B01G141600 chr4D 83.237 173 23 3 1 168 363691616 363691445 2.740000e-33 154.0
15 TraesCS4B01G141600 chr7B 95.704 675 28 1 5004 5677 732606623 732607297 0.000000e+00 1085.0
16 TraesCS4B01G141600 chr7B 89.899 99 8 1 4802 4900 122966970 122966874 5.970000e-25 126.0
17 TraesCS4B01G141600 chr1B 95.569 677 27 3 5004 5677 133439657 133440333 0.000000e+00 1081.0
18 TraesCS4B01G141600 chr1B 81.288 497 44 24 1023 1512 74120634 74121088 1.950000e-94 357.0
19 TraesCS4B01G141600 chr1B 83.777 376 37 13 1630 2005 74121359 74121710 9.110000e-88 335.0
20 TraesCS4B01G141600 chr1B 81.124 249 46 1 1 249 263573257 263573504 1.250000e-46 198.0
21 TraesCS4B01G141600 chr1B 97.778 45 1 0 2419 2463 202010487 202010443 1.700000e-10 78.7
22 TraesCS4B01G141600 chr1B 93.478 46 2 1 2419 2464 51601847 51601803 3.670000e-07 67.6
23 TraesCS4B01G141600 chr7D 95.273 677 28 4 5002 5676 11522539 11521865 0.000000e+00 1070.0
24 TraesCS4B01G141600 chr7D 95.349 43 2 0 2416 2458 312564483 312564525 1.020000e-07 69.4
25 TraesCS4B01G141600 chr5B 95.140 679 29 4 5001 5677 318283378 318282702 0.000000e+00 1068.0
26 TraesCS4B01G141600 chr5B 84.500 200 30 1 1 200 622544897 622544699 4.490000e-46 196.0
27 TraesCS4B01G141600 chr3D 94.745 685 31 5 4995 5677 14115620 14116301 0.000000e+00 1061.0
28 TraesCS4B01G141600 chr3D 91.489 47 4 0 2412 2458 567663216 567663170 1.320000e-06 65.8
29 TraesCS4B01G141600 chr3D 88.679 53 3 3 2413 2463 2692173 2692224 1.710000e-05 62.1
30 TraesCS4B01G141600 chr1D 95.111 675 30 3 5003 5676 109568913 109569585 0.000000e+00 1061.0
31 TraesCS4B01G141600 chr1D 94.838 678 31 4 5002 5677 449152087 449151412 0.000000e+00 1055.0
32 TraesCS4B01G141600 chr1D 100.000 37 0 0 2419 2455 198283017 198282981 1.020000e-07 69.4
33 TraesCS4B01G141600 chr2D 79.835 243 42 6 8 249 612289448 612289684 2.720000e-38 171.0
34 TraesCS4B01G141600 chr2D 88.571 105 8 3 4797 4901 147229967 147229867 2.150000e-24 124.0
35 TraesCS4B01G141600 chr2D 87.387 111 10 4 4794 4901 580266083 580265974 2.150000e-24 124.0
36 TraesCS4B01G141600 chr2D 86.517 89 11 1 1545 1633 644823579 644823666 4.680000e-16 97.1
37 TraesCS4B01G141600 chr5D 79.365 252 36 7 1 249 316794352 316794114 4.550000e-36 163.0
38 TraesCS4B01G141600 chr3A 83.529 170 26 2 1 169 682011042 682011210 2.120000e-34 158.0
39 TraesCS4B01G141600 chr3B 93.069 101 6 1 4802 4901 51801851 51801751 4.580000e-31 147.0
40 TraesCS4B01G141600 chr3B 90.476 105 8 2 4798 4900 51801747 51801851 2.760000e-28 137.0
41 TraesCS4B01G141600 chr1A 92.157 102 8 0 4802 4903 405800561 405800662 1.650000e-30 145.0
42 TraesCS4B01G141600 chr1A 92.000 100 6 2 4802 4900 405800659 405800561 7.670000e-29 139.0
43 TraesCS4B01G141600 chr1A 78.351 194 38 3 8 200 139561753 139561563 7.720000e-24 122.0
44 TraesCS4B01G141600 chr1A 95.556 45 2 0 2419 2463 165176795 165176751 7.890000e-09 73.1
45 TraesCS4B01G141600 chr1A 92.157 51 3 1 2415 2464 583127283 583127233 2.840000e-08 71.3
46 TraesCS4B01G141600 chr1A 90.000 50 4 1 2413 2461 58290385 58290336 4.750000e-06 63.9
47 TraesCS4B01G141600 chr2B 91.429 105 6 2 4799 4900 11466180 11466284 2.130000e-29 141.0
48 TraesCS4B01G141600 chr2B 90.196 102 8 2 4802 4901 11466284 11466183 1.280000e-26 132.0
49 TraesCS4B01G141600 chr6A 100.000 39 0 0 2419 2457 19600636 19600674 7.890000e-09 73.1
50 TraesCS4B01G141600 chr6D 97.500 40 1 0 2416 2455 409547334 409547373 1.020000e-07 69.4
51 TraesCS4B01G141600 chr6D 91.667 48 4 0 2416 2463 305174034 305174081 3.670000e-07 67.6
52 TraesCS4B01G141600 chr6D 95.122 41 1 1 2419 2458 318346673 318346633 4.750000e-06 63.9
53 TraesCS4B01G141600 chr6D 93.182 44 2 1 2413 2455 368363622 368363665 4.750000e-06 63.9
54 TraesCS4B01G141600 chr6D 92.857 42 3 0 2414 2455 305174039 305173998 1.710000e-05 62.1
55 TraesCS4B01G141600 chrUn 97.436 39 1 0 2417 2455 382894092 382894130 3.670000e-07 67.6
56 TraesCS4B01G141600 chrUn 86.792 53 3 4 2408 2457 96588275 96588326 7.950000e-04 56.5
57 TraesCS4B01G141600 chr2A 93.182 44 3 0 2419 2462 54110360 54110317 1.320000e-06 65.8
58 TraesCS4B01G141600 chr5A 88.679 53 4 2 2413 2464 647485027 647484976 4.750000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G141600 chr4B 187016123 187021799 5676 False 10484.0 10484 100.000000 1 5677 1 chr4B.!!$F1 5676
1 TraesCS4B01G141600 chr4B 666672157 666672847 690 True 1051.0 1051 94.211000 4987 5673 1 chr4B.!!$R2 686
2 TraesCS4B01G141600 chr4A 447320656 447325979 5323 True 1281.6 4562 92.176600 252 4989 5 chr4A.!!$R2 4737
3 TraesCS4B01G141600 chr4D 122693450 122698083 4633 False 2298.0 3901 94.733667 274 5002 3 chr4D.!!$F1 4728
4 TraesCS4B01G141600 chr4D 84996521 84997194 673 True 1057.0 1057 94.970000 5003 5677 1 chr4D.!!$R1 674
5 TraesCS4B01G141600 chr7B 732606623 732607297 674 False 1085.0 1085 95.704000 5004 5677 1 chr7B.!!$F1 673
6 TraesCS4B01G141600 chr1B 133439657 133440333 676 False 1081.0 1081 95.569000 5004 5677 1 chr1B.!!$F1 673
7 TraesCS4B01G141600 chr1B 74120634 74121710 1076 False 346.0 357 82.532500 1023 2005 2 chr1B.!!$F3 982
8 TraesCS4B01G141600 chr7D 11521865 11522539 674 True 1070.0 1070 95.273000 5002 5676 1 chr7D.!!$R1 674
9 TraesCS4B01G141600 chr5B 318282702 318283378 676 True 1068.0 1068 95.140000 5001 5677 1 chr5B.!!$R1 676
10 TraesCS4B01G141600 chr3D 14115620 14116301 681 False 1061.0 1061 94.745000 4995 5677 1 chr3D.!!$F2 682
11 TraesCS4B01G141600 chr1D 109568913 109569585 672 False 1061.0 1061 95.111000 5003 5676 1 chr1D.!!$F1 673
12 TraesCS4B01G141600 chr1D 449151412 449152087 675 True 1055.0 1055 94.838000 5002 5677 1 chr1D.!!$R2 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.034896 GTTCAGAAAGGGCGGTCAGA 59.965 55.000 0.00 0.0 0.00 3.27 F
99 100 0.034896 TTCAGAAAGGGCGGTCAGAC 59.965 55.000 0.00 0.0 0.00 3.51 F
151 152 0.037419 GACGCATTGTTGGCCCAAAT 60.037 50.000 0.00 0.0 0.00 2.32 F
576 800 0.040058 ACATTGCTGGCTCCATTCCA 59.960 50.000 0.00 0.0 0.00 3.53 F
1013 1269 0.819259 TAAGCCATGATGAAGCCCGC 60.819 55.000 0.00 0.0 0.00 6.13 F
1412 1900 2.172293 CCTTGCTTGCTTAGAGGAGGAT 59.828 50.000 0.00 0.0 0.00 3.24 F
1474 1968 2.637872 TCCCCTTTCTTACTGACCAGTG 59.362 50.000 12.54 0.0 42.52 3.66 F
3221 4135 2.301870 TGAACCAAGAGGCACGATACTT 59.698 45.455 0.00 0.0 39.06 2.24 F
3930 4854 0.037232 GAGTAGCACCTGGACCACAC 60.037 60.000 0.00 0.0 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1272 1759 0.396435 TCTCTTTGAGCGGCTGGAAA 59.604 50.000 7.50 5.41 0.00 3.13 R
1698 2542 0.698238 CCTCATCCACAAACCCAGGA 59.302 55.000 0.00 0.00 35.59 3.86 R
2017 2861 2.502295 GAGCTCTGCCCATTCATTAGG 58.498 52.381 6.43 0.00 0.00 2.69 R
2283 3128 1.877443 AGTCCAATTGTGCGGTAACAC 59.123 47.619 4.43 0.00 41.10 3.32 R
3011 3917 0.323360 TAACAGAACCAGGGCCATGC 60.323 55.000 13.13 0.00 0.00 4.06 R
3190 4104 4.021368 TGCCTCTTGGTTCAGTCTAAGTAC 60.021 45.833 0.00 0.00 35.27 2.73 R
3464 4381 3.230134 TCCACCAAAACCAGAAATGAGG 58.770 45.455 0.00 0.00 0.00 3.86 R
4492 5421 0.034186 ATGTCCCCGTGAATGCATGT 60.034 50.000 0.00 0.00 0.00 3.21 R
4890 5832 0.037232 ACAAGCAACCTACTCGCTCC 60.037 55.000 0.00 0.00 34.11 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.874205 ATTTGTTTGTGCACTATATATTTGCTT 57.126 25.926 19.41 0.00 37.16 3.91
28 29 8.686397 TTGTTTGTGCACTATATATTTGCTTG 57.314 30.769 19.41 0.00 37.16 4.01
29 30 7.825681 TGTTTGTGCACTATATATTTGCTTGT 58.174 30.769 19.41 0.00 37.16 3.16
30 31 7.754475 TGTTTGTGCACTATATATTTGCTTGTG 59.246 33.333 19.41 5.28 37.16 3.33
31 32 7.622893 TTGTGCACTATATATTTGCTTGTGA 57.377 32.000 19.41 0.00 37.16 3.58
32 33 7.622893 TGTGCACTATATATTTGCTTGTGAA 57.377 32.000 19.41 0.00 37.16 3.18
33 34 8.049655 TGTGCACTATATATTTGCTTGTGAAA 57.950 30.769 19.41 0.00 37.16 2.69
34 35 8.685427 TGTGCACTATATATTTGCTTGTGAAAT 58.315 29.630 19.41 0.00 37.16 2.17
45 46 7.551035 TTTGCTTGTGAAATAATGCAAAAGT 57.449 28.000 8.22 0.00 44.03 2.66
46 47 7.551035 TTGCTTGTGAAATAATGCAAAAGTT 57.449 28.000 0.00 0.00 37.46 2.66
47 48 6.946165 TGCTTGTGAAATAATGCAAAAGTTG 58.054 32.000 0.00 0.00 33.00 3.16
48 49 6.538021 TGCTTGTGAAATAATGCAAAAGTTGT 59.462 30.769 0.00 0.00 33.00 3.32
49 50 6.847289 GCTTGTGAAATAATGCAAAAGTTGTG 59.153 34.615 0.00 0.00 33.00 3.33
50 51 6.284475 TGTGAAATAATGCAAAAGTTGTGC 57.716 33.333 11.34 11.34 42.55 4.57
51 52 5.051173 TGTGAAATAATGCAAAAGTTGTGCG 60.051 36.000 13.32 0.00 45.27 5.34
52 53 5.046529 TGAAATAATGCAAAAGTTGTGCGT 58.953 33.333 13.32 10.27 45.27 5.24
53 54 4.970472 AATAATGCAAAAGTTGTGCGTG 57.030 36.364 13.56 0.00 45.27 5.34
54 55 2.575694 AATGCAAAAGTTGTGCGTGA 57.424 40.000 13.56 0.00 45.27 4.35
55 56 2.575694 ATGCAAAAGTTGTGCGTGAA 57.424 40.000 12.09 0.00 45.27 3.18
56 57 2.354109 TGCAAAAGTTGTGCGTGAAA 57.646 40.000 13.32 0.00 45.27 2.69
57 58 2.886081 TGCAAAAGTTGTGCGTGAAAT 58.114 38.095 13.32 0.00 45.27 2.17
58 59 4.033990 TGCAAAAGTTGTGCGTGAAATA 57.966 36.364 13.32 0.00 45.27 1.40
59 60 4.424626 TGCAAAAGTTGTGCGTGAAATAA 58.575 34.783 13.32 0.00 45.27 1.40
60 61 5.046529 TGCAAAAGTTGTGCGTGAAATAAT 58.953 33.333 13.32 0.00 45.27 1.28
61 62 5.051173 TGCAAAAGTTGTGCGTGAAATAATG 60.051 36.000 13.32 0.00 45.27 1.90
62 63 5.174761 GCAAAAGTTGTGCGTGAAATAATGA 59.825 36.000 1.37 0.00 31.20 2.57
63 64 6.292061 GCAAAAGTTGTGCGTGAAATAATGAA 60.292 34.615 1.37 0.00 31.20 2.57
64 65 7.616673 CAAAAGTTGTGCGTGAAATAATGAAA 58.383 30.769 0.00 0.00 0.00 2.69
65 66 7.763172 AAAGTTGTGCGTGAAATAATGAAAA 57.237 28.000 0.00 0.00 0.00 2.29
66 67 6.991485 AGTTGTGCGTGAAATAATGAAAAG 57.009 33.333 0.00 0.00 0.00 2.27
67 68 6.734137 AGTTGTGCGTGAAATAATGAAAAGA 58.266 32.000 0.00 0.00 0.00 2.52
68 69 7.370383 AGTTGTGCGTGAAATAATGAAAAGAT 58.630 30.769 0.00 0.00 0.00 2.40
69 70 7.867403 AGTTGTGCGTGAAATAATGAAAAGATT 59.133 29.630 0.00 0.00 0.00 2.40
70 71 9.123709 GTTGTGCGTGAAATAATGAAAAGATTA 57.876 29.630 0.00 0.00 0.00 1.75
71 72 9.853555 TTGTGCGTGAAATAATGAAAAGATTAT 57.146 25.926 0.00 0.00 31.10 1.28
72 73 9.288124 TGTGCGTGAAATAATGAAAAGATTATG 57.712 29.630 0.00 0.00 30.44 1.90
73 74 8.261908 GTGCGTGAAATAATGAAAAGATTATGC 58.738 33.333 0.00 0.00 30.44 3.14
74 75 8.190122 TGCGTGAAATAATGAAAAGATTATGCT 58.810 29.630 0.00 0.00 30.44 3.79
75 76 9.663904 GCGTGAAATAATGAAAAGATTATGCTA 57.336 29.630 0.00 0.00 30.44 3.49
90 91 8.230472 AGATTATGCTATTTGTTCAGAAAGGG 57.770 34.615 0.00 0.00 0.00 3.95
91 92 4.725790 ATGCTATTTGTTCAGAAAGGGC 57.274 40.909 0.00 0.00 0.00 5.19
92 93 2.487762 TGCTATTTGTTCAGAAAGGGCG 59.512 45.455 0.00 0.00 0.00 6.13
93 94 2.159379 GCTATTTGTTCAGAAAGGGCGG 60.159 50.000 0.00 0.00 0.00 6.13
94 95 1.995376 ATTTGTTCAGAAAGGGCGGT 58.005 45.000 0.00 0.00 0.00 5.68
95 96 1.314730 TTTGTTCAGAAAGGGCGGTC 58.685 50.000 0.00 0.00 0.00 4.79
96 97 0.181587 TTGTTCAGAAAGGGCGGTCA 59.818 50.000 0.00 0.00 0.00 4.02
97 98 0.250295 TGTTCAGAAAGGGCGGTCAG 60.250 55.000 0.00 0.00 0.00 3.51
98 99 0.034896 GTTCAGAAAGGGCGGTCAGA 59.965 55.000 0.00 0.00 0.00 3.27
99 100 0.034896 TTCAGAAAGGGCGGTCAGAC 59.965 55.000 0.00 0.00 0.00 3.51
100 101 1.738099 CAGAAAGGGCGGTCAGACG 60.738 63.158 0.00 0.00 0.00 4.18
101 102 2.434359 GAAAGGGCGGTCAGACGG 60.434 66.667 3.72 3.72 0.00 4.79
119 120 4.418401 CCACGCCGGCACATTTGG 62.418 66.667 28.98 19.18 0.00 3.28
120 121 4.418401 CACGCCGGCACATTTGGG 62.418 66.667 28.98 9.93 0.00 4.12
121 122 4.966787 ACGCCGGCACATTTGGGT 62.967 61.111 28.98 10.68 0.00 4.51
122 123 4.114997 CGCCGGCACATTTGGGTC 62.115 66.667 28.98 0.00 0.00 4.46
125 126 2.671619 CGGCACATTTGGGTCGGT 60.672 61.111 0.00 0.00 43.82 4.69
126 127 2.961768 GGCACATTTGGGTCGGTG 59.038 61.111 0.00 0.00 0.00 4.94
128 129 2.560861 CACATTTGGGTCGGTGCG 59.439 61.111 0.00 0.00 0.00 5.34
129 130 2.112297 ACATTTGGGTCGGTGCGT 59.888 55.556 0.00 0.00 0.00 5.24
130 131 1.527380 ACATTTGGGTCGGTGCGTT 60.527 52.632 0.00 0.00 0.00 4.84
131 132 1.081509 CATTTGGGTCGGTGCGTTG 60.082 57.895 0.00 0.00 0.00 4.10
132 133 2.265182 ATTTGGGTCGGTGCGTTGG 61.265 57.895 0.00 0.00 0.00 3.77
133 134 2.684192 ATTTGGGTCGGTGCGTTGGA 62.684 55.000 0.00 0.00 0.00 3.53
134 135 4.612412 TGGGTCGGTGCGTTGGAC 62.612 66.667 0.00 0.00 0.00 4.02
144 145 4.531708 CGTTGGACGCATTGTTGG 57.468 55.556 0.00 0.00 33.65 3.77
145 146 1.729131 CGTTGGACGCATTGTTGGC 60.729 57.895 0.00 0.00 33.65 4.52
146 147 1.372872 GTTGGACGCATTGTTGGCC 60.373 57.895 0.00 0.00 0.00 5.36
147 148 2.569354 TTGGACGCATTGTTGGCCC 61.569 57.895 0.00 0.00 0.00 5.80
148 149 2.988684 GGACGCATTGTTGGCCCA 60.989 61.111 0.00 0.00 0.00 5.36
149 150 2.569354 GGACGCATTGTTGGCCCAA 61.569 57.895 0.00 0.00 0.00 4.12
150 151 1.365633 GACGCATTGTTGGCCCAAA 59.634 52.632 0.00 0.00 0.00 3.28
151 152 0.037419 GACGCATTGTTGGCCCAAAT 60.037 50.000 0.00 0.00 0.00 2.32
152 153 0.320596 ACGCATTGTTGGCCCAAATG 60.321 50.000 14.66 14.66 0.00 2.32
153 154 0.320596 CGCATTGTTGGCCCAAATGT 60.321 50.000 18.22 0.00 0.00 2.71
154 155 1.441738 GCATTGTTGGCCCAAATGTC 58.558 50.000 18.22 10.37 0.00 3.06
155 156 1.270732 GCATTGTTGGCCCAAATGTCA 60.271 47.619 18.22 0.00 0.00 3.58
156 157 2.809665 GCATTGTTGGCCCAAATGTCAA 60.810 45.455 18.22 0.00 0.00 3.18
157 158 3.474600 CATTGTTGGCCCAAATGTCAAA 58.525 40.909 0.00 0.00 0.00 2.69
158 159 2.611225 TGTTGGCCCAAATGTCAAAC 57.389 45.000 0.00 0.00 0.00 2.93
159 160 1.833630 TGTTGGCCCAAATGTCAAACA 59.166 42.857 0.00 0.00 0.00 2.83
160 161 2.437281 TGTTGGCCCAAATGTCAAACAT 59.563 40.909 0.00 0.00 41.31 2.71
161 162 2.807392 GTTGGCCCAAATGTCAAACATG 59.193 45.455 0.00 0.00 37.97 3.21
162 163 2.323599 TGGCCCAAATGTCAAACATGA 58.676 42.857 0.00 0.00 37.97 3.07
163 164 2.036992 TGGCCCAAATGTCAAACATGAC 59.963 45.455 0.00 2.09 37.97 3.06
164 165 2.327568 GCCCAAATGTCAAACATGACG 58.672 47.619 0.00 0.00 37.97 4.35
165 166 2.926159 GCCCAAATGTCAAACATGACGG 60.926 50.000 0.00 1.06 37.97 4.79
166 167 2.556189 CCCAAATGTCAAACATGACGGA 59.444 45.455 0.00 0.00 37.97 4.69
167 168 3.564511 CCAAATGTCAAACATGACGGAC 58.435 45.455 0.00 4.09 37.97 4.79
168 169 3.004210 CCAAATGTCAAACATGACGGACA 59.996 43.478 16.19 16.19 37.97 4.02
170 171 4.685169 AATGTCAAACATGACGGACATC 57.315 40.909 21.80 0.45 46.95 3.06
171 172 3.118905 TGTCAAACATGACGGACATCA 57.881 42.857 0.00 0.00 41.43 3.07
172 173 3.066380 TGTCAAACATGACGGACATCAG 58.934 45.455 0.00 0.00 41.43 2.90
173 174 3.244044 TGTCAAACATGACGGACATCAGA 60.244 43.478 0.00 0.00 41.43 3.27
174 175 3.123621 GTCAAACATGACGGACATCAGAC 59.876 47.826 0.00 0.00 37.07 3.51
175 176 1.996292 AACATGACGGACATCAGACG 58.004 50.000 0.00 0.00 37.07 4.18
176 177 0.173481 ACATGACGGACATCAGACGG 59.827 55.000 0.00 0.00 37.07 4.79
177 178 0.528466 CATGACGGACATCAGACGGG 60.528 60.000 0.00 0.00 37.07 5.28
178 179 2.202756 GACGGACATCAGACGGGC 60.203 66.667 0.00 0.00 0.00 6.13
179 180 4.129737 ACGGACATCAGACGGGCG 62.130 66.667 0.00 0.00 0.00 6.13
180 181 4.873129 CGGACATCAGACGGGCGG 62.873 72.222 0.00 0.00 0.00 6.13
181 182 4.530857 GGACATCAGACGGGCGGG 62.531 72.222 0.00 0.00 0.00 6.13
194 195 3.122323 GCGGGCGATCCAAACGAA 61.122 61.111 0.00 0.00 34.36 3.85
195 196 2.782615 CGGGCGATCCAAACGAAC 59.217 61.111 0.00 0.00 34.36 3.95
196 197 2.030401 CGGGCGATCCAAACGAACA 61.030 57.895 0.00 0.00 34.36 3.18
197 198 1.570347 CGGGCGATCCAAACGAACAA 61.570 55.000 0.00 0.00 34.36 2.83
198 199 0.594110 GGGCGATCCAAACGAACAAA 59.406 50.000 0.00 0.00 35.00 2.83
199 200 1.001158 GGGCGATCCAAACGAACAAAA 60.001 47.619 0.00 0.00 35.00 2.44
200 201 2.544069 GGGCGATCCAAACGAACAAAAA 60.544 45.455 0.00 0.00 35.00 1.94
226 227 9.458374 AAAAAGACAAAAATACTGTTCGTATGG 57.542 29.630 0.00 0.00 38.78 2.74
227 228 6.737254 AGACAAAAATACTGTTCGTATGGG 57.263 37.500 0.00 0.00 38.78 4.00
228 229 6.235664 AGACAAAAATACTGTTCGTATGGGT 58.764 36.000 0.00 0.00 38.78 4.51
229 230 6.370718 AGACAAAAATACTGTTCGTATGGGTC 59.629 38.462 0.00 0.00 38.78 4.46
230 231 5.121142 ACAAAAATACTGTTCGTATGGGTCG 59.879 40.000 0.00 0.00 38.78 4.79
231 232 3.447918 AATACTGTTCGTATGGGTCGG 57.552 47.619 0.00 0.00 38.78 4.79
232 233 0.457035 TACTGTTCGTATGGGTCGGC 59.543 55.000 0.00 0.00 0.00 5.54
233 234 1.876714 CTGTTCGTATGGGTCGGCG 60.877 63.158 0.00 0.00 0.00 6.46
234 235 3.259751 GTTCGTATGGGTCGGCGC 61.260 66.667 0.00 0.00 0.00 6.53
235 236 4.858433 TTCGTATGGGTCGGCGCG 62.858 66.667 0.00 0.00 0.00 6.86
238 239 3.560278 GTATGGGTCGGCGCGTTG 61.560 66.667 8.43 0.00 0.00 4.10
239 240 4.823419 TATGGGTCGGCGCGTTGG 62.823 66.667 8.43 0.00 0.00 3.77
243 244 3.428282 GGTCGGCGCGTTGGAATT 61.428 61.111 8.43 0.00 0.00 2.17
244 245 2.202298 GTCGGCGCGTTGGAATTG 60.202 61.111 8.43 0.00 0.00 2.32
245 246 4.096558 TCGGCGCGTTGGAATTGC 62.097 61.111 8.43 0.00 0.00 3.56
246 247 4.101790 CGGCGCGTTGGAATTGCT 62.102 61.111 8.43 0.00 0.00 3.91
247 248 2.202479 GGCGCGTTGGAATTGCTC 60.202 61.111 8.43 0.00 0.00 4.26
248 249 2.690778 GGCGCGTTGGAATTGCTCT 61.691 57.895 8.43 0.00 0.00 4.09
249 250 1.366111 GGCGCGTTGGAATTGCTCTA 61.366 55.000 8.43 0.00 0.00 2.43
250 251 0.446222 GCGCGTTGGAATTGCTCTAA 59.554 50.000 8.43 0.00 0.00 2.10
251 252 1.790481 GCGCGTTGGAATTGCTCTAAC 60.790 52.381 8.43 0.00 41.03 2.34
252 253 1.463056 CGCGTTGGAATTGCTCTAACA 59.537 47.619 0.00 0.00 43.79 2.41
253 254 2.724839 CGCGTTGGAATTGCTCTAACAC 60.725 50.000 0.00 0.00 43.79 3.32
254 255 2.225491 GCGTTGGAATTGCTCTAACACA 59.775 45.455 0.00 0.00 43.79 3.72
255 256 3.304391 GCGTTGGAATTGCTCTAACACAA 60.304 43.478 0.00 0.00 43.79 3.33
256 257 4.615912 GCGTTGGAATTGCTCTAACACAAT 60.616 41.667 0.00 0.00 43.79 2.71
257 258 5.460646 CGTTGGAATTGCTCTAACACAATT 58.539 37.500 0.00 0.88 46.37 2.32
258 259 5.343058 CGTTGGAATTGCTCTAACACAATTG 59.657 40.000 3.24 3.24 44.36 2.32
266 267 6.899393 TGCTCTAACACAATTGGAAAAGAT 57.101 33.333 10.83 0.00 0.00 2.40
270 271 7.487189 GCTCTAACACAATTGGAAAAGATGATG 59.513 37.037 10.83 0.00 0.00 3.07
303 304 2.953640 GTTTCCGCAAACGTGTGATA 57.046 45.000 10.72 0.00 37.45 2.15
308 310 0.095245 CGCAAACGTGTGATAGCTGG 59.905 55.000 10.72 0.00 37.45 4.85
315 317 3.009723 ACGTGTGATAGCTGGAATTTGG 58.990 45.455 0.00 0.00 0.00 3.28
391 393 4.440250 GGCGTATATAGCGACAGATGGATT 60.440 45.833 8.34 0.00 37.32 3.01
516 518 4.641989 CAGATGATCCACTTTTACCCAAGG 59.358 45.833 0.00 0.00 0.00 3.61
538 540 3.710209 AGTAAGGAGCTGATTTGCAGT 57.290 42.857 0.00 0.00 46.62 4.40
576 800 0.040058 ACATTGCTGGCTCCATTCCA 59.960 50.000 0.00 0.00 0.00 3.53
613 852 2.203437 GTCCAACCCACCCACCAC 60.203 66.667 0.00 0.00 0.00 4.16
633 872 1.212935 CCGACCCTCCTTCAATCCATT 59.787 52.381 0.00 0.00 0.00 3.16
655 900 6.916360 TTGCAGGAATTTCACTTATCCTTT 57.084 33.333 0.00 0.00 40.29 3.11
657 902 8.415950 TTGCAGGAATTTCACTTATCCTTTTA 57.584 30.769 0.00 0.00 40.29 1.52
658 903 7.826690 TGCAGGAATTTCACTTATCCTTTTAC 58.173 34.615 0.00 0.00 40.29 2.01
659 904 7.669722 TGCAGGAATTTCACTTATCCTTTTACT 59.330 33.333 0.00 0.00 40.29 2.24
660 905 8.523658 GCAGGAATTTCACTTATCCTTTTACTT 58.476 33.333 0.00 0.00 40.29 2.24
736 981 5.743636 AGCAATCTCTTTCTCTCTCAAGT 57.256 39.130 0.00 0.00 0.00 3.16
746 991 6.551601 TCTTTCTCTCTCAAGTTACCACTTCT 59.448 38.462 0.00 0.00 41.69 2.85
817 1066 0.947244 AAAGAAAGCAGACCAGCACG 59.053 50.000 0.00 0.00 36.85 5.34
920 1174 1.305381 CAACTCTCTCCCGTCCCCT 60.305 63.158 0.00 0.00 0.00 4.79
932 1186 1.380112 GTCCCCTACTCCTCACGCT 60.380 63.158 0.00 0.00 0.00 5.07
974 1228 3.731728 GCCAGCATCCTCCCCACA 61.732 66.667 0.00 0.00 0.00 4.17
975 1229 2.273449 CCAGCATCCTCCCCACAC 59.727 66.667 0.00 0.00 0.00 3.82
976 1230 2.304056 CCAGCATCCTCCCCACACT 61.304 63.158 0.00 0.00 0.00 3.55
992 1248 1.651770 ACACTTGGATCCCTCCTCCTA 59.348 52.381 9.90 0.00 42.59 2.94
994 1250 1.940957 ACTTGGATCCCTCCTCCTACT 59.059 52.381 9.90 0.00 42.59 2.57
996 1252 3.536434 ACTTGGATCCCTCCTCCTACTAA 59.464 47.826 9.90 0.00 42.59 2.24
1011 1267 2.355010 ACTAAGCCATGATGAAGCCC 57.645 50.000 0.00 0.00 0.00 5.19
1012 1268 1.233019 CTAAGCCATGATGAAGCCCG 58.767 55.000 0.00 0.00 0.00 6.13
1013 1269 0.819259 TAAGCCATGATGAAGCCCGC 60.819 55.000 0.00 0.00 0.00 6.13
1014 1270 3.599704 GCCATGATGAAGCCCGCC 61.600 66.667 0.00 0.00 0.00 6.13
1015 1271 3.282157 CCATGATGAAGCCCGCCG 61.282 66.667 0.00 0.00 0.00 6.46
1016 1272 3.282157 CATGATGAAGCCCGCCGG 61.282 66.667 0.00 0.00 0.00 6.13
1108 1595 4.920112 CCGTGCACCACCCGAACA 62.920 66.667 12.15 0.00 0.00 3.18
1272 1759 3.458163 TTCCTCGGCCGATTCGCT 61.458 61.111 31.19 0.00 0.00 4.93
1287 1774 2.616330 CGCTTTCCAGCCGCTCAAA 61.616 57.895 0.00 0.00 44.06 2.69
1412 1900 2.172293 CCTTGCTTGCTTAGAGGAGGAT 59.828 50.000 0.00 0.00 0.00 3.24
1414 1902 4.376146 CTTGCTTGCTTAGAGGAGGATAC 58.624 47.826 0.00 0.00 0.00 2.24
1474 1968 2.637872 TCCCCTTTCTTACTGACCAGTG 59.362 50.000 12.54 0.00 42.52 3.66
1518 2012 7.923344 ACCAACTCGATCTACTCAAAATGATAG 59.077 37.037 0.00 0.00 0.00 2.08
1523 2017 8.561932 TCGATCTACTCAAAATGATAGTTTCG 57.438 34.615 0.00 0.00 0.00 3.46
1556 2171 5.867716 TCTTCTTACATGTTTAAGACCTCGC 59.132 40.000 2.30 0.00 37.73 5.03
1557 2172 5.401531 TCTTACATGTTTAAGACCTCGCT 57.598 39.130 2.30 0.00 33.90 4.93
1561 2176 4.890088 ACATGTTTAAGACCTCGCTTGTA 58.110 39.130 0.00 0.00 0.00 2.41
1578 2193 4.260375 GCTTGTATACACTCGAGCAATTGG 60.260 45.833 18.24 0.00 0.00 3.16
1596 2211 3.297134 TGGGGTTGATCCTCAATTAGC 57.703 47.619 0.00 0.00 44.86 3.09
1601 2216 4.273318 GGTTGATCCTCAATTAGCTTGGT 58.727 43.478 0.00 0.00 38.79 3.67
1603 2218 4.574674 TGATCCTCAATTAGCTTGGTGT 57.425 40.909 0.00 0.00 35.43 4.16
1615 2230 3.412386 AGCTTGGTGTACAGGTTCATTC 58.588 45.455 0.00 0.00 0.00 2.67
1636 2480 7.550551 TCATTCTCAGGTTGCTTACTTCTATTG 59.449 37.037 0.00 0.00 0.00 1.90
1645 2489 6.816134 TGCTTACTTCTATTGTGCAATTGA 57.184 33.333 10.34 4.07 32.34 2.57
1744 2588 2.778299 TGTGACCTAGCAATCCACAAC 58.222 47.619 0.00 0.00 35.16 3.32
1774 2618 6.070424 TGAGGGGAAACTTGTATAAGGTACAG 60.070 42.308 4.12 0.00 38.26 2.74
1784 2628 9.216117 ACTTGTATAAGGTACAGAAACATTCAC 57.784 33.333 4.12 0.00 38.26 3.18
1938 2782 8.653191 TCTTACTGAGTTGGTAATTAAGTTGGA 58.347 33.333 0.00 0.00 0.00 3.53
1946 2790 9.582648 AGTTGGTAATTAAGTTGGAGTTACAAT 57.417 29.630 0.00 0.00 32.24 2.71
2130 2974 6.464222 CAAGTCAGGTGTAGGACATCTTTAA 58.536 40.000 0.00 0.00 35.73 1.52
2218 3062 3.882888 GGTGTTGGTGATGACTTGAGAAA 59.117 43.478 0.00 0.00 0.00 2.52
2219 3063 4.338118 GGTGTTGGTGATGACTTGAGAAAA 59.662 41.667 0.00 0.00 0.00 2.29
2275 3120 6.857964 GTGTTGATGGTTCTGTACAATTTGAG 59.142 38.462 2.79 0.00 0.00 3.02
2283 3128 8.402472 TGGTTCTGTACAATTTGAGTTTAACAG 58.598 33.333 2.79 6.85 35.54 3.16
2360 3205 9.770097 TGTTATTTTGGAAGTGCAAATTCAATA 57.230 25.926 13.31 7.34 43.89 1.90
2416 3261 4.521146 AGAAGTGAGGATTATGCCACAAG 58.479 43.478 7.69 0.00 30.27 3.16
2417 3262 4.018960 AGAAGTGAGGATTATGCCACAAGT 60.019 41.667 7.69 0.00 30.27 3.16
2426 3330 7.452562 AGGATTATGCCACAAGTTTGAAAAAT 58.547 30.769 0.00 0.00 0.00 1.82
2541 3445 6.469782 TTTTCAGAAACTTCATCCTTGCTT 57.530 33.333 0.00 0.00 0.00 3.91
2547 3451 5.536161 AGAAACTTCATCCTTGCTTTGCTTA 59.464 36.000 0.00 0.00 0.00 3.09
2549 3453 5.990120 ACTTCATCCTTGCTTTGCTTATT 57.010 34.783 0.00 0.00 0.00 1.40
2550 3454 5.717119 ACTTCATCCTTGCTTTGCTTATTG 58.283 37.500 0.00 0.00 0.00 1.90
3041 3954 4.156008 CCTGGTTCTGTTATAACTGGCAAC 59.844 45.833 18.93 16.16 0.00 4.17
3093 4007 3.981071 TCGTTCATGGATCCAAGTCTT 57.019 42.857 20.67 0.00 0.00 3.01
3190 4104 7.011109 CAGGATTTTGTAACCACGTAGATAAGG 59.989 40.741 0.00 0.00 0.00 2.69
3221 4135 2.301870 TGAACCAAGAGGCACGATACTT 59.698 45.455 0.00 0.00 39.06 2.24
3357 4271 5.159209 GCATGAAAGTTCATCCAAGTTCTG 58.841 41.667 3.51 0.00 45.62 3.02
3464 4381 5.063880 ACAGTGAGGATTGGTCTTGTTTAC 58.936 41.667 0.00 0.00 0.00 2.01
3615 4532 7.244192 GTCACTCTATGCAAATAAGGTTTGTC 58.756 38.462 0.00 0.00 0.00 3.18
3654 4578 6.993902 ACTAGCAGTAGACTCCTCTGTAATAC 59.006 42.308 0.00 0.00 0.00 1.89
3682 4606 4.654091 AGTAGTTGTTGCAGCAAATTGT 57.346 36.364 20.94 6.63 0.00 2.71
3727 4651 9.906660 GAATGACTTGTTCAATTAAATGGTGTA 57.093 29.630 0.00 0.00 37.92 2.90
3930 4854 0.037232 GAGTAGCACCTGGACCACAC 60.037 60.000 0.00 0.00 0.00 3.82
3990 4914 7.776933 ATATATATTGTGGATAGTTGCTGCG 57.223 36.000 0.00 0.00 0.00 5.18
4079 5003 5.890985 TCAAATGTTTTCCCCGTGATGATAT 59.109 36.000 0.00 0.00 0.00 1.63
4226 5150 1.494766 CGTCACCGACAACATGCACA 61.495 55.000 0.00 0.00 35.63 4.57
4263 5187 4.689062 AGTTCCTCCCTCTGTATCTTTGA 58.311 43.478 0.00 0.00 0.00 2.69
4270 5194 5.962433 TCCCTCTGTATCTTTGAAAGTACG 58.038 41.667 4.68 4.73 0.00 3.67
4294 5218 2.610374 TGTCACCGCTAACAAGTGAAAC 59.390 45.455 0.00 0.00 41.87 2.78
4310 5234 8.257306 ACAAGTGAAACATAACAACCTGAAAAT 58.743 29.630 0.00 0.00 41.43 1.82
4389 5318 6.712547 AGCAAGTTAAATCTACAAGCTGAAGT 59.287 34.615 0.00 0.00 30.27 3.01
4430 5359 7.339212 TGGATCGATATGAACCAAACTCATTTT 59.661 33.333 0.00 0.00 45.63 1.82
4431 5360 7.857885 GGATCGATATGAACCAAACTCATTTTC 59.142 37.037 0.00 0.00 39.29 2.29
4451 5380 2.823747 TCTCTTTGGCTAGACGCTGTAA 59.176 45.455 0.00 0.00 39.13 2.41
4460 5389 2.370281 AGACGCTGTAACCAGATGTG 57.630 50.000 0.00 0.00 41.50 3.21
4462 5391 2.823747 AGACGCTGTAACCAGATGTGTA 59.176 45.455 0.00 0.00 41.50 2.90
4492 5421 4.144297 CCCCTTTCACAGTTGAGATTGAA 58.856 43.478 0.00 0.00 31.71 2.69
4507 5436 0.887247 TTGAACATGCATTCACGGGG 59.113 50.000 0.00 0.00 38.31 5.73
4508 5437 0.037447 TGAACATGCATTCACGGGGA 59.963 50.000 0.00 0.00 33.62 4.81
4509 5438 0.451783 GAACATGCATTCACGGGGAC 59.548 55.000 0.00 0.00 0.00 4.46
4510 5439 0.251121 AACATGCATTCACGGGGACA 60.251 50.000 0.00 0.00 0.00 4.02
4511 5440 0.034186 ACATGCATTCACGGGGACAT 60.034 50.000 0.00 0.00 0.00 3.06
4517 5452 1.670811 CATTCACGGGGACATTGCTAC 59.329 52.381 0.00 0.00 0.00 3.58
4583 5521 5.354513 GCTACAGGGAAATACCTTGAACTTC 59.645 44.000 5.08 0.00 46.90 3.01
4605 5543 3.129287 CACATGTGAAGGCAAAGGGATAC 59.871 47.826 21.64 0.00 0.00 2.24
4749 5691 9.645059 TTCTTTCTGTACATGAAGAGAATACTG 57.355 33.333 16.11 0.00 29.81 2.74
4750 5692 7.761704 TCTTTCTGTACATGAAGAGAATACTGC 59.238 37.037 13.92 0.00 29.81 4.40
4751 5693 6.530019 TCTGTACATGAAGAGAATACTGCA 57.470 37.500 0.00 0.00 0.00 4.41
4752 5694 7.117285 TCTGTACATGAAGAGAATACTGCAT 57.883 36.000 0.00 0.00 36.67 3.96
4810 5752 4.130118 CAGTGTTGCATATTACTCCCTCC 58.870 47.826 0.00 0.00 0.00 4.30
4811 5753 3.131396 GTGTTGCATATTACTCCCTCCG 58.869 50.000 0.00 0.00 0.00 4.63
4812 5754 2.769663 TGTTGCATATTACTCCCTCCGT 59.230 45.455 0.00 0.00 0.00 4.69
4813 5755 3.181469 TGTTGCATATTACTCCCTCCGTC 60.181 47.826 0.00 0.00 0.00 4.79
4814 5756 1.968493 TGCATATTACTCCCTCCGTCC 59.032 52.381 0.00 0.00 0.00 4.79
4815 5757 1.275573 GCATATTACTCCCTCCGTCCC 59.724 57.143 0.00 0.00 0.00 4.46
4816 5758 1.544691 CATATTACTCCCTCCGTCCCG 59.455 57.143 0.00 0.00 0.00 5.14
4817 5759 0.846015 TATTACTCCCTCCGTCCCGA 59.154 55.000 0.00 0.00 0.00 5.14
4818 5760 0.032813 ATTACTCCCTCCGTCCCGAA 60.033 55.000 0.00 0.00 0.00 4.30
4819 5761 0.032813 TTACTCCCTCCGTCCCGAAT 60.033 55.000 0.00 0.00 0.00 3.34
4820 5762 0.032813 TACTCCCTCCGTCCCGAATT 60.033 55.000 0.00 0.00 0.00 2.17
4821 5763 0.032813 ACTCCCTCCGTCCCGAATTA 60.033 55.000 0.00 0.00 0.00 1.40
4822 5764 0.388294 CTCCCTCCGTCCCGAATTAC 59.612 60.000 0.00 0.00 0.00 1.89
4823 5765 0.032813 TCCCTCCGTCCCGAATTACT 60.033 55.000 0.00 0.00 0.00 2.24
4824 5766 0.828677 CCCTCCGTCCCGAATTACTT 59.171 55.000 0.00 0.00 0.00 2.24
4825 5767 1.472728 CCCTCCGTCCCGAATTACTTG 60.473 57.143 0.00 0.00 0.00 3.16
4826 5768 1.206371 CCTCCGTCCCGAATTACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
4827 5769 2.537401 CTCCGTCCCGAATTACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
4828 5770 1.135315 TCCGTCCCGAATTACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
4829 5771 0.643820 CGTCCCGAATTACTTGTCGC 59.356 55.000 0.00 0.00 35.93 5.19
4830 5772 1.717194 GTCCCGAATTACTTGTCGCA 58.283 50.000 0.00 0.00 35.93 5.10
4831 5773 1.659098 GTCCCGAATTACTTGTCGCAG 59.341 52.381 0.00 0.00 35.93 5.18
4832 5774 1.546923 TCCCGAATTACTTGTCGCAGA 59.453 47.619 0.00 0.00 35.93 4.26
4833 5775 2.028839 TCCCGAATTACTTGTCGCAGAA 60.029 45.455 0.00 0.00 39.69 3.02
4834 5776 2.739913 CCCGAATTACTTGTCGCAGAAA 59.260 45.455 0.00 0.00 39.69 2.52
4835 5777 3.374058 CCCGAATTACTTGTCGCAGAAAT 59.626 43.478 0.00 0.00 39.69 2.17
4836 5778 4.334443 CCGAATTACTTGTCGCAGAAATG 58.666 43.478 0.00 0.00 39.69 2.32
4837 5779 4.334443 CGAATTACTTGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
4838 5780 4.092821 CGAATTACTTGTCGCAGAAATGGA 59.907 41.667 0.00 0.00 39.69 3.41
4839 5781 5.220662 CGAATTACTTGTCGCAGAAATGGAT 60.221 40.000 0.00 0.00 39.69 3.41
4840 5782 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
4841 5783 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
4842 5784 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
4843 5785 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
4844 5786 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
4845 5787 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
4846 5788 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
4847 5789 5.912892 TGTCGCAGAAATGGATGTATCTAA 58.087 37.500 0.00 0.00 39.69 2.10
4848 5790 6.345298 TGTCGCAGAAATGGATGTATCTAAA 58.655 36.000 0.00 0.00 39.69 1.85
4849 5791 6.821160 TGTCGCAGAAATGGATGTATCTAAAA 59.179 34.615 0.00 0.00 39.69 1.52
4850 5792 7.498900 TGTCGCAGAAATGGATGTATCTAAAAT 59.501 33.333 0.00 0.00 39.69 1.82
4851 5793 7.800380 GTCGCAGAAATGGATGTATCTAAAATG 59.200 37.037 0.00 0.00 39.69 2.32
4852 5794 7.498900 TCGCAGAAATGGATGTATCTAAAATGT 59.501 33.333 0.00 0.00 0.00 2.71
4853 5795 7.800380 CGCAGAAATGGATGTATCTAAAATGTC 59.200 37.037 0.00 0.00 0.00 3.06
4854 5796 8.844244 GCAGAAATGGATGTATCTAAAATGTCT 58.156 33.333 0.00 0.00 0.00 3.41
4876 5818 9.367160 TGTCTAGATACATCCATTTCTATGACA 57.633 33.333 0.00 0.00 33.37 3.58
4885 5827 9.125026 ACATCCATTTCTATGACAAGTAATTCC 57.875 33.333 0.00 0.00 33.37 3.01
4886 5828 7.786178 TCCATTTCTATGACAAGTAATTCCG 57.214 36.000 0.00 0.00 33.37 4.30
4887 5829 7.561251 TCCATTTCTATGACAAGTAATTCCGA 58.439 34.615 0.00 0.00 33.37 4.55
4888 5830 8.044309 TCCATTTCTATGACAAGTAATTCCGAA 58.956 33.333 0.00 0.00 33.37 4.30
4889 5831 8.122952 CCATTTCTATGACAAGTAATTCCGAAC 58.877 37.037 0.00 0.00 33.37 3.95
4890 5832 6.880822 TTCTATGACAAGTAATTCCGAACG 57.119 37.500 0.00 0.00 0.00 3.95
4891 5833 5.345702 TCTATGACAAGTAATTCCGAACGG 58.654 41.667 6.94 6.94 0.00 4.44
4892 5834 3.663995 TGACAAGTAATTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
4893 5835 3.581755 TGACAAGTAATTCCGAACGGAG 58.418 45.455 15.34 5.60 46.06 4.63
4894 5836 2.344025 ACAAGTAATTCCGAACGGAGC 58.656 47.619 15.34 8.15 46.06 4.70
4895 5837 1.323534 CAAGTAATTCCGAACGGAGCG 59.676 52.381 15.34 0.00 46.06 5.03
4930 5872 7.065085 GCTTGTGATTAATCTTGAGAAGTGCTA 59.935 37.037 16.24 0.00 0.00 3.49
4965 5907 2.184088 TCCCGGATGGATGGAAACTA 57.816 50.000 0.73 0.00 38.61 2.24
5030 5975 0.845102 AAAAGGAGGATGACCCCGGT 60.845 55.000 0.00 0.00 36.73 5.28
5039 5984 0.398522 ATGACCCCGGTCTCTGCATA 60.399 55.000 14.78 0.00 44.80 3.14
5173 6118 2.477245 TGATAAAGGGGTGCTAGCTGA 58.523 47.619 17.23 0.00 0.00 4.26
5319 6264 2.745884 CGCCGCCATCTTCCACAA 60.746 61.111 0.00 0.00 0.00 3.33
5361 6306 0.615850 GGCTTCTACCTTGTCTGGCT 59.384 55.000 0.00 0.00 0.00 4.75
5410 6355 2.116983 GACAGCAACCTCCTCCTGCA 62.117 60.000 0.00 0.00 38.58 4.41
5457 6403 4.783621 GCCTCCACAGCGCCATGA 62.784 66.667 2.29 0.00 0.00 3.07
5470 6416 0.732880 GCCATGACGTCGATATCCGG 60.733 60.000 11.62 0.00 39.14 5.14
5562 6509 2.162681 CAGGAGGGAAAGCGACAAAAT 58.837 47.619 0.00 0.00 0.00 1.82
5582 6529 1.956802 CCATCATCGTCCGATCCGA 59.043 57.895 0.00 0.00 38.89 4.55
5592 6539 0.613853 TCCGATCCGAAAGACCCAGT 60.614 55.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.303156 ACAAGCAAATATATAGTGCACAAACAA 58.697 29.630 21.04 1.29 40.83 2.83
5 6 7.967854 TCACAAGCAAATATATAGTGCACAAAC 59.032 33.333 21.04 0.00 40.83 2.93
6 7 8.049655 TCACAAGCAAATATATAGTGCACAAA 57.950 30.769 21.04 7.03 40.83 2.83
7 8 7.622893 TCACAAGCAAATATATAGTGCACAA 57.377 32.000 21.04 4.13 40.83 3.33
8 9 7.622893 TTCACAAGCAAATATATAGTGCACA 57.377 32.000 21.04 5.47 40.83 4.57
19 20 9.270640 ACTTTTGCATTATTTCACAAGCAAATA 57.729 25.926 10.61 2.99 46.96 1.40
20 21 8.156994 ACTTTTGCATTATTTCACAAGCAAAT 57.843 26.923 10.61 0.00 46.96 2.32
21 22 7.551035 ACTTTTGCATTATTTCACAAGCAAA 57.449 28.000 6.31 6.31 46.38 3.68
22 23 7.065563 ACAACTTTTGCATTATTTCACAAGCAA 59.934 29.630 0.00 0.00 39.86 3.91
23 24 6.538021 ACAACTTTTGCATTATTTCACAAGCA 59.462 30.769 0.00 0.00 0.00 3.91
24 25 6.847289 CACAACTTTTGCATTATTTCACAAGC 59.153 34.615 0.00 0.00 0.00 4.01
25 26 6.847289 GCACAACTTTTGCATTATTTCACAAG 59.153 34.615 0.00 0.00 39.93 3.16
26 27 6.509199 CGCACAACTTTTGCATTATTTCACAA 60.509 34.615 1.05 0.00 40.20 3.33
27 28 5.051173 CGCACAACTTTTGCATTATTTCACA 60.051 36.000 1.05 0.00 40.20 3.58
28 29 5.051106 ACGCACAACTTTTGCATTATTTCAC 60.051 36.000 1.05 0.00 40.20 3.18
29 30 5.046529 ACGCACAACTTTTGCATTATTTCA 58.953 33.333 1.05 0.00 40.20 2.69
30 31 5.174761 TCACGCACAACTTTTGCATTATTTC 59.825 36.000 1.05 0.00 40.20 2.17
31 32 5.046529 TCACGCACAACTTTTGCATTATTT 58.953 33.333 1.05 0.00 40.20 1.40
32 33 4.615949 TCACGCACAACTTTTGCATTATT 58.384 34.783 1.05 0.00 40.20 1.40
33 34 4.235939 TCACGCACAACTTTTGCATTAT 57.764 36.364 1.05 0.00 40.20 1.28
34 35 3.699779 TCACGCACAACTTTTGCATTA 57.300 38.095 1.05 0.00 40.20 1.90
35 36 2.575694 TCACGCACAACTTTTGCATT 57.424 40.000 1.05 0.00 40.20 3.56
36 37 2.575694 TTCACGCACAACTTTTGCAT 57.424 40.000 1.05 0.00 40.20 3.96
37 38 2.354109 TTTCACGCACAACTTTTGCA 57.646 40.000 1.05 0.00 40.20 4.08
38 39 5.174761 TCATTATTTCACGCACAACTTTTGC 59.825 36.000 0.00 0.00 36.57 3.68
39 40 6.746104 TCATTATTTCACGCACAACTTTTG 57.254 33.333 0.00 0.00 0.00 2.44
40 41 7.763172 TTTCATTATTTCACGCACAACTTTT 57.237 28.000 0.00 0.00 0.00 2.27
41 42 7.704472 TCTTTTCATTATTTCACGCACAACTTT 59.296 29.630 0.00 0.00 0.00 2.66
42 43 7.199766 TCTTTTCATTATTTCACGCACAACTT 58.800 30.769 0.00 0.00 0.00 2.66
43 44 6.734137 TCTTTTCATTATTTCACGCACAACT 58.266 32.000 0.00 0.00 0.00 3.16
44 45 6.984740 TCTTTTCATTATTTCACGCACAAC 57.015 33.333 0.00 0.00 0.00 3.32
45 46 9.853555 ATAATCTTTTCATTATTTCACGCACAA 57.146 25.926 0.00 0.00 0.00 3.33
46 47 9.288124 CATAATCTTTTCATTATTTCACGCACA 57.712 29.630 0.00 0.00 28.11 4.57
47 48 8.261908 GCATAATCTTTTCATTATTTCACGCAC 58.738 33.333 0.00 0.00 28.11 5.34
48 49 8.190122 AGCATAATCTTTTCATTATTTCACGCA 58.810 29.630 0.00 0.00 28.11 5.24
49 50 8.566008 AGCATAATCTTTTCATTATTTCACGC 57.434 30.769 0.00 0.00 28.11 5.34
64 65 8.689972 CCCTTTCTGAACAAATAGCATAATCTT 58.310 33.333 0.00 0.00 0.00 2.40
65 66 7.201857 GCCCTTTCTGAACAAATAGCATAATCT 60.202 37.037 0.00 0.00 0.00 2.40
66 67 6.920210 GCCCTTTCTGAACAAATAGCATAATC 59.080 38.462 0.00 0.00 0.00 1.75
67 68 6.460123 CGCCCTTTCTGAACAAATAGCATAAT 60.460 38.462 0.00 0.00 0.00 1.28
68 69 5.163663 CGCCCTTTCTGAACAAATAGCATAA 60.164 40.000 0.00 0.00 0.00 1.90
69 70 4.335315 CGCCCTTTCTGAACAAATAGCATA 59.665 41.667 0.00 0.00 0.00 3.14
70 71 3.129287 CGCCCTTTCTGAACAAATAGCAT 59.871 43.478 0.00 0.00 0.00 3.79
71 72 2.487762 CGCCCTTTCTGAACAAATAGCA 59.512 45.455 0.00 0.00 0.00 3.49
72 73 2.159379 CCGCCCTTTCTGAACAAATAGC 60.159 50.000 0.00 0.00 0.00 2.97
73 74 3.081804 ACCGCCCTTTCTGAACAAATAG 58.918 45.455 0.00 0.00 0.00 1.73
74 75 3.078837 GACCGCCCTTTCTGAACAAATA 58.921 45.455 0.00 0.00 0.00 1.40
75 76 1.886542 GACCGCCCTTTCTGAACAAAT 59.113 47.619 0.00 0.00 0.00 2.32
76 77 1.314730 GACCGCCCTTTCTGAACAAA 58.685 50.000 0.00 0.00 0.00 2.83
77 78 0.181587 TGACCGCCCTTTCTGAACAA 59.818 50.000 0.00 0.00 0.00 2.83
78 79 0.250295 CTGACCGCCCTTTCTGAACA 60.250 55.000 0.00 0.00 0.00 3.18
79 80 0.034896 TCTGACCGCCCTTTCTGAAC 59.965 55.000 0.00 0.00 0.00 3.18
80 81 0.034896 GTCTGACCGCCCTTTCTGAA 59.965 55.000 0.00 0.00 0.00 3.02
81 82 1.671742 GTCTGACCGCCCTTTCTGA 59.328 57.895 0.00 0.00 0.00 3.27
82 83 1.738099 CGTCTGACCGCCCTTTCTG 60.738 63.158 1.55 0.00 0.00 3.02
83 84 2.657237 CGTCTGACCGCCCTTTCT 59.343 61.111 1.55 0.00 0.00 2.52
84 85 2.434359 CCGTCTGACCGCCCTTTC 60.434 66.667 1.55 0.00 0.00 2.62
85 86 4.699522 GCCGTCTGACCGCCCTTT 62.700 66.667 9.55 0.00 0.00 3.11
102 103 4.418401 CCAAATGTGCCGGCGTGG 62.418 66.667 23.90 18.92 42.50 4.94
103 104 4.418401 CCCAAATGTGCCGGCGTG 62.418 66.667 23.90 13.89 0.00 5.34
104 105 4.966787 ACCCAAATGTGCCGGCGT 62.967 61.111 23.90 7.85 0.00 5.68
105 106 4.114997 GACCCAAATGTGCCGGCG 62.115 66.667 23.90 7.09 0.00 6.46
106 107 4.114997 CGACCCAAATGTGCCGGC 62.115 66.667 22.73 22.73 0.00 6.13
107 108 3.439540 CCGACCCAAATGTGCCGG 61.440 66.667 0.00 0.00 0.00 6.13
108 109 2.671619 ACCGACCCAAATGTGCCG 60.672 61.111 0.00 0.00 0.00 5.69
109 110 2.961768 CACCGACCCAAATGTGCC 59.038 61.111 0.00 0.00 0.00 5.01
110 111 2.258286 GCACCGACCCAAATGTGC 59.742 61.111 0.00 0.00 46.09 4.57
111 112 1.791103 AACGCACCGACCCAAATGTG 61.791 55.000 0.00 0.00 0.00 3.21
112 113 1.527380 AACGCACCGACCCAAATGT 60.527 52.632 0.00 0.00 0.00 2.71
113 114 1.081509 CAACGCACCGACCCAAATG 60.082 57.895 0.00 0.00 0.00 2.32
114 115 2.265182 CCAACGCACCGACCCAAAT 61.265 57.895 0.00 0.00 0.00 2.32
115 116 2.902846 CCAACGCACCGACCCAAA 60.903 61.111 0.00 0.00 0.00 3.28
116 117 3.862991 TCCAACGCACCGACCCAA 61.863 61.111 0.00 0.00 0.00 4.12
117 118 4.612412 GTCCAACGCACCGACCCA 62.612 66.667 0.00 0.00 0.00 4.51
127 128 1.729131 GCCAACAATGCGTCCAACG 60.729 57.895 0.00 0.00 45.88 4.10
128 129 1.372872 GGCCAACAATGCGTCCAAC 60.373 57.895 0.00 0.00 0.00 3.77
129 130 2.569354 GGGCCAACAATGCGTCCAA 61.569 57.895 4.39 0.00 0.00 3.53
130 131 2.988684 GGGCCAACAATGCGTCCA 60.989 61.111 4.39 0.00 0.00 4.02
131 132 2.093537 TTTGGGCCAACAATGCGTCC 62.094 55.000 20.79 0.00 0.00 4.79
132 133 0.037419 ATTTGGGCCAACAATGCGTC 60.037 50.000 20.79 0.00 0.00 5.19
133 134 0.320596 CATTTGGGCCAACAATGCGT 60.321 50.000 20.79 0.00 0.00 5.24
134 135 0.320596 ACATTTGGGCCAACAATGCG 60.321 50.000 24.30 11.12 0.00 4.73
135 136 1.270732 TGACATTTGGGCCAACAATGC 60.271 47.619 24.30 18.49 0.00 3.56
136 137 2.835580 TGACATTTGGGCCAACAATG 57.164 45.000 20.79 22.31 0.00 2.82
137 138 3.118112 TGTTTGACATTTGGGCCAACAAT 60.118 39.130 20.79 8.20 0.00 2.71
138 139 2.237143 TGTTTGACATTTGGGCCAACAA 59.763 40.909 20.79 16.77 0.00 2.83
139 140 1.833630 TGTTTGACATTTGGGCCAACA 59.166 42.857 20.79 11.07 0.00 3.33
140 141 2.611225 TGTTTGACATTTGGGCCAAC 57.389 45.000 20.79 8.16 0.00 3.77
141 142 2.702478 TCATGTTTGACATTTGGGCCAA 59.298 40.909 16.66 16.66 36.53 4.52
142 143 2.323599 TCATGTTTGACATTTGGGCCA 58.676 42.857 0.00 0.00 36.53 5.36
153 154 3.325870 GTCTGATGTCCGTCATGTTTGA 58.674 45.455 0.00 0.00 36.83 2.69
154 155 2.092681 CGTCTGATGTCCGTCATGTTTG 59.907 50.000 0.00 0.00 36.83 2.93
155 156 2.337583 CGTCTGATGTCCGTCATGTTT 58.662 47.619 0.00 0.00 36.83 2.83
156 157 1.404181 CCGTCTGATGTCCGTCATGTT 60.404 52.381 0.00 0.00 36.83 2.71
157 158 0.173481 CCGTCTGATGTCCGTCATGT 59.827 55.000 0.00 0.00 36.83 3.21
158 159 0.528466 CCCGTCTGATGTCCGTCATG 60.528 60.000 0.00 0.00 36.83 3.07
159 160 1.816537 CCCGTCTGATGTCCGTCAT 59.183 57.895 0.00 0.00 39.77 3.06
160 161 3.001902 GCCCGTCTGATGTCCGTCA 62.002 63.158 0.00 0.00 0.00 4.35
161 162 2.202756 GCCCGTCTGATGTCCGTC 60.203 66.667 0.00 0.00 0.00 4.79
162 163 4.129737 CGCCCGTCTGATGTCCGT 62.130 66.667 0.00 0.00 0.00 4.69
163 164 4.873129 CCGCCCGTCTGATGTCCG 62.873 72.222 0.00 0.00 0.00 4.79
164 165 4.530857 CCCGCCCGTCTGATGTCC 62.531 72.222 0.00 0.00 0.00 4.02
177 178 3.122323 TTCGTTTGGATCGCCCGC 61.122 61.111 0.00 0.00 37.93 6.13
178 179 1.570347 TTGTTCGTTTGGATCGCCCG 61.570 55.000 0.00 0.00 37.93 6.13
179 180 0.594110 TTTGTTCGTTTGGATCGCCC 59.406 50.000 0.00 0.00 0.00 6.13
180 181 2.409152 TTTTGTTCGTTTGGATCGCC 57.591 45.000 0.00 0.00 0.00 5.54
200 201 9.458374 CCATACGAACAGTATTTTTGTCTTTTT 57.542 29.630 0.00 0.00 43.12 1.94
201 202 8.079809 CCCATACGAACAGTATTTTTGTCTTTT 58.920 33.333 0.00 0.00 43.12 2.27
202 203 7.229907 ACCCATACGAACAGTATTTTTGTCTTT 59.770 33.333 0.00 0.00 43.12 2.52
203 204 6.713450 ACCCATACGAACAGTATTTTTGTCTT 59.287 34.615 0.00 0.00 43.12 3.01
204 205 6.235664 ACCCATACGAACAGTATTTTTGTCT 58.764 36.000 0.00 0.00 43.12 3.41
205 206 6.490566 ACCCATACGAACAGTATTTTTGTC 57.509 37.500 0.00 0.00 43.12 3.18
206 207 5.121142 CGACCCATACGAACAGTATTTTTGT 59.879 40.000 0.00 0.00 43.12 2.83
207 208 5.446741 CCGACCCATACGAACAGTATTTTTG 60.447 44.000 0.00 0.00 43.12 2.44
208 209 4.632688 CCGACCCATACGAACAGTATTTTT 59.367 41.667 0.00 0.00 43.12 1.94
209 210 4.186159 CCGACCCATACGAACAGTATTTT 58.814 43.478 0.00 0.00 43.12 1.82
210 211 3.788937 CCGACCCATACGAACAGTATTT 58.211 45.455 0.00 0.00 43.12 1.40
211 212 2.482490 GCCGACCCATACGAACAGTATT 60.482 50.000 0.00 0.00 43.12 1.89
212 213 1.068127 GCCGACCCATACGAACAGTAT 59.932 52.381 0.00 0.00 46.37 2.12
213 214 0.457035 GCCGACCCATACGAACAGTA 59.543 55.000 0.00 0.00 40.03 2.74
214 215 1.217244 GCCGACCCATACGAACAGT 59.783 57.895 0.00 0.00 0.00 3.55
215 216 1.876714 CGCCGACCCATACGAACAG 60.877 63.158 0.00 0.00 0.00 3.16
216 217 2.182284 CGCCGACCCATACGAACA 59.818 61.111 0.00 0.00 0.00 3.18
217 218 3.259751 GCGCCGACCCATACGAAC 61.260 66.667 0.00 0.00 0.00 3.95
218 219 4.858433 CGCGCCGACCCATACGAA 62.858 66.667 0.00 0.00 0.00 3.85
221 222 3.560278 CAACGCGCCGACCCATAC 61.560 66.667 5.73 0.00 0.00 2.39
222 223 4.823419 CCAACGCGCCGACCCATA 62.823 66.667 5.73 0.00 0.00 2.74
226 227 3.428282 AATTCCAACGCGCCGACC 61.428 61.111 5.73 0.00 0.00 4.79
227 228 2.202298 CAATTCCAACGCGCCGAC 60.202 61.111 5.73 0.00 0.00 4.79
228 229 4.096558 GCAATTCCAACGCGCCGA 62.097 61.111 5.73 0.00 0.00 5.54
229 230 4.101790 AGCAATTCCAACGCGCCG 62.102 61.111 5.73 0.00 0.00 6.46
230 231 1.366111 TAGAGCAATTCCAACGCGCC 61.366 55.000 5.73 0.00 0.00 6.53
231 232 0.446222 TTAGAGCAATTCCAACGCGC 59.554 50.000 5.73 0.00 0.00 6.86
232 233 1.463056 TGTTAGAGCAATTCCAACGCG 59.537 47.619 3.53 3.53 31.04 6.01
233 234 2.225491 TGTGTTAGAGCAATTCCAACGC 59.775 45.455 0.00 0.00 38.08 4.84
234 235 4.481930 TTGTGTTAGAGCAATTCCAACG 57.518 40.909 0.00 0.00 31.04 4.10
235 236 5.634859 CCAATTGTGTTAGAGCAATTCCAAC 59.365 40.000 4.43 0.00 41.62 3.77
236 237 5.538053 TCCAATTGTGTTAGAGCAATTCCAA 59.462 36.000 4.43 0.00 41.62 3.53
237 238 5.076182 TCCAATTGTGTTAGAGCAATTCCA 58.924 37.500 4.43 0.00 41.62 3.53
238 239 5.643379 TCCAATTGTGTTAGAGCAATTCC 57.357 39.130 4.43 0.00 41.62 3.01
239 240 7.867403 TCTTTTCCAATTGTGTTAGAGCAATTC 59.133 33.333 4.43 0.00 41.62 2.17
240 241 7.725251 TCTTTTCCAATTGTGTTAGAGCAATT 58.275 30.769 4.43 0.00 43.53 2.32
241 242 7.288810 TCTTTTCCAATTGTGTTAGAGCAAT 57.711 32.000 4.43 0.00 36.95 3.56
242 243 6.707440 TCTTTTCCAATTGTGTTAGAGCAA 57.293 33.333 4.43 0.00 0.00 3.91
243 244 6.489700 TCATCTTTTCCAATTGTGTTAGAGCA 59.510 34.615 4.43 0.00 0.00 4.26
244 245 6.913170 TCATCTTTTCCAATTGTGTTAGAGC 58.087 36.000 4.43 0.00 0.00 4.09
245 246 7.972277 CCATCATCTTTTCCAATTGTGTTAGAG 59.028 37.037 4.43 0.00 0.00 2.43
246 247 7.669304 TCCATCATCTTTTCCAATTGTGTTAGA 59.331 33.333 4.43 2.74 0.00 2.10
247 248 7.829725 TCCATCATCTTTTCCAATTGTGTTAG 58.170 34.615 4.43 0.00 0.00 2.34
248 249 7.773489 TCCATCATCTTTTCCAATTGTGTTA 57.227 32.000 4.43 0.00 0.00 2.41
249 250 6.669125 TCCATCATCTTTTCCAATTGTGTT 57.331 33.333 4.43 0.00 0.00 3.32
250 251 6.351541 CCATCCATCATCTTTTCCAATTGTGT 60.352 38.462 4.43 0.00 0.00 3.72
251 252 6.046593 CCATCCATCATCTTTTCCAATTGTG 58.953 40.000 4.43 0.00 0.00 3.33
252 253 5.959594 TCCATCCATCATCTTTTCCAATTGT 59.040 36.000 4.43 0.00 0.00 2.71
253 254 6.474140 TCCATCCATCATCTTTTCCAATTG 57.526 37.500 0.00 0.00 0.00 2.32
254 255 7.038160 TGTTTCCATCCATCATCTTTTCCAATT 60.038 33.333 0.00 0.00 0.00 2.32
255 256 6.441284 TGTTTCCATCCATCATCTTTTCCAAT 59.559 34.615 0.00 0.00 0.00 3.16
256 257 5.779260 TGTTTCCATCCATCATCTTTTCCAA 59.221 36.000 0.00 0.00 0.00 3.53
257 258 5.331906 TGTTTCCATCCATCATCTTTTCCA 58.668 37.500 0.00 0.00 0.00 3.53
258 259 5.920193 TGTTTCCATCCATCATCTTTTCC 57.080 39.130 0.00 0.00 0.00 3.13
266 267 2.127271 ACGCATGTTTCCATCCATCA 57.873 45.000 0.00 0.00 0.00 3.07
285 286 1.195900 GCTATCACACGTTTGCGGAAA 59.804 47.619 0.00 0.00 43.45 3.13
303 304 0.899720 CACATGCCCAAATTCCAGCT 59.100 50.000 0.00 0.00 0.00 4.24
308 310 3.034569 GCGACACATGCCCAAATTC 57.965 52.632 0.00 0.00 0.00 2.17
391 393 1.811645 TTCGTCATCCGTCACTGCCA 61.812 55.000 0.00 0.00 37.94 4.92
413 415 1.747355 GTTCCATGATTCCAGCACCAG 59.253 52.381 0.00 0.00 0.00 4.00
414 416 1.355381 AGTTCCATGATTCCAGCACCA 59.645 47.619 0.00 0.00 0.00 4.17
415 417 2.134789 AGTTCCATGATTCCAGCACC 57.865 50.000 0.00 0.00 0.00 5.01
416 418 4.265073 AGTAAGTTCCATGATTCCAGCAC 58.735 43.478 0.00 0.00 0.00 4.40
417 419 4.517285 GAGTAAGTTCCATGATTCCAGCA 58.483 43.478 0.00 0.00 0.00 4.41
418 420 3.557595 CGAGTAAGTTCCATGATTCCAGC 59.442 47.826 0.00 0.00 0.00 4.85
455 457 6.543736 CGGTTTTCTTTCTCTAATTAGCCAC 58.456 40.000 7.67 0.00 0.00 5.01
516 518 4.006319 ACTGCAAATCAGCTCCTTACTTC 58.994 43.478 0.00 0.00 46.76 3.01
538 540 0.532115 TAGCGTCTCATCTGCTGCAA 59.468 50.000 3.02 0.00 39.73 4.08
613 852 0.839946 ATGGATTGAAGGAGGGTCGG 59.160 55.000 0.00 0.00 0.00 4.79
633 872 6.916360 AAAAGGATAAGTGAAATTCCTGCA 57.084 33.333 0.00 0.00 38.59 4.41
665 910 9.979897 CCAAGGAGGAAAATGATGGATATAATA 57.020 33.333 0.00 0.00 41.22 0.98
666 911 7.398332 GCCAAGGAGGAAAATGATGGATATAAT 59.602 37.037 0.00 0.00 41.22 1.28
667 912 6.721208 GCCAAGGAGGAAAATGATGGATATAA 59.279 38.462 0.00 0.00 41.22 0.98
668 913 6.045931 AGCCAAGGAGGAAAATGATGGATATA 59.954 38.462 0.00 0.00 41.22 0.86
669 914 5.082425 GCCAAGGAGGAAAATGATGGATAT 58.918 41.667 0.00 0.00 41.22 1.63
736 981 3.578716 CAGACAGGAAGGAGAAGTGGTAA 59.421 47.826 0.00 0.00 0.00 2.85
854 1103 2.411904 CAGAGCAGAAGAAGACGCTTT 58.588 47.619 0.00 0.00 34.12 3.51
941 1195 3.771160 GCGGAGGAAGCGAGGGAA 61.771 66.667 0.00 0.00 0.00 3.97
963 1217 1.216990 GATCCAAGTGTGGGGAGGAT 58.783 55.000 0.00 0.00 46.01 3.24
972 1226 0.419459 AGGAGGAGGGATCCAAGTGT 59.581 55.000 15.23 0.00 39.47 3.55
974 1228 1.940957 AGTAGGAGGAGGGATCCAAGT 59.059 52.381 15.23 0.00 39.47 3.16
975 1229 2.785357 AGTAGGAGGAGGGATCCAAG 57.215 55.000 15.23 0.00 39.47 3.61
976 1230 3.694537 GCTTAGTAGGAGGAGGGATCCAA 60.695 52.174 15.23 0.00 39.47 3.53
989 1245 3.406764 GGCTTCATCATGGCTTAGTAGG 58.593 50.000 0.00 0.00 0.00 3.18
992 1248 1.475751 CGGGCTTCATCATGGCTTAGT 60.476 52.381 0.00 0.00 0.00 2.24
994 1250 0.819259 GCGGGCTTCATCATGGCTTA 60.819 55.000 0.00 0.00 0.00 3.09
996 1252 2.517875 GCGGGCTTCATCATGGCT 60.518 61.111 0.00 0.00 0.00 4.75
1272 1759 0.396435 TCTCTTTGAGCGGCTGGAAA 59.604 50.000 7.50 5.41 0.00 3.13
1367 1854 2.224606 TGCAGAGTTGGAGAAAGCAAG 58.775 47.619 0.00 0.00 0.00 4.01
1374 1861 3.415212 CAAGGAAATGCAGAGTTGGAGA 58.585 45.455 0.00 0.00 0.00 3.71
1412 1900 8.645814 TTGTCAATCCTTAACTAGACTCAGTA 57.354 34.615 0.00 0.00 0.00 2.74
1414 1902 7.757624 GTCTTGTCAATCCTTAACTAGACTCAG 59.242 40.741 0.00 0.00 40.37 3.35
1428 1922 5.414765 ACGGGAAATTAAGTCTTGTCAATCC 59.585 40.000 0.00 0.00 0.00 3.01
1518 2012 8.336080 ACATGTAAGAAGAAGAAAGAACGAAAC 58.664 33.333 0.00 0.00 0.00 2.78
1556 2171 4.271049 CCCAATTGCTCGAGTGTATACAAG 59.729 45.833 15.13 2.43 0.00 3.16
1557 2172 4.188462 CCCAATTGCTCGAGTGTATACAA 58.812 43.478 15.13 8.75 0.00 2.41
1561 2176 1.559682 ACCCCAATTGCTCGAGTGTAT 59.440 47.619 15.13 2.33 0.00 2.29
1596 2211 4.641396 TGAGAATGAACCTGTACACCAAG 58.359 43.478 0.00 0.00 0.00 3.61
1601 2216 4.641396 CAACCTGAGAATGAACCTGTACA 58.359 43.478 0.00 0.00 0.00 2.90
1603 2218 3.327757 AGCAACCTGAGAATGAACCTGTA 59.672 43.478 0.00 0.00 0.00 2.74
1615 2230 5.163814 GCACAATAGAAGTAAGCAACCTGAG 60.164 44.000 0.00 0.00 0.00 3.35
1636 2480 4.886579 AGTTCTCCCAATTTCAATTGCAC 58.113 39.130 0.00 0.00 43.38 4.57
1645 2489 5.184892 AGCATCAGTAGTTCTCCCAATTT 57.815 39.130 0.00 0.00 0.00 1.82
1697 2541 1.075374 CCTCATCCACAAACCCAGGAA 59.925 52.381 0.00 0.00 34.62 3.36
1698 2542 0.698238 CCTCATCCACAAACCCAGGA 59.302 55.000 0.00 0.00 35.59 3.86
1744 2588 6.599638 CCTTATACAAGTTTCCCCTCAAAGAG 59.400 42.308 0.00 0.00 0.00 2.85
1784 2628 8.103948 ACTGATTTTTAGATGGTCTGAAACTG 57.896 34.615 0.00 0.00 32.69 3.16
1938 2782 9.530633 GATCAGTTTCGGAATACTATTGTAACT 57.469 33.333 0.00 0.00 31.80 2.24
1946 2790 9.745880 GACTTAATGATCAGTTTCGGAATACTA 57.254 33.333 0.00 0.00 0.00 1.82
2017 2861 2.502295 GAGCTCTGCCCATTCATTAGG 58.498 52.381 6.43 0.00 0.00 2.69
2219 3063 6.710744 ACGGTTGACAAGATAGTCTGATTTTT 59.289 34.615 0.00 0.00 39.27 1.94
2229 3074 5.103000 CACCTAGAACGGTTGACAAGATAG 58.897 45.833 0.00 0.00 34.29 2.08
2275 3120 3.948196 TGTGCGGTAACACTGTTAAAC 57.052 42.857 3.10 0.00 41.30 2.01
2283 3128 1.877443 AGTCCAATTGTGCGGTAACAC 59.123 47.619 4.43 0.00 41.10 3.32
2426 3330 4.283467 CCTCCGTCCCACAATATAAGATCA 59.717 45.833 0.00 0.00 0.00 2.92
2579 3483 6.826231 TCAGTCAAATGACCAGAAGTTAACAA 59.174 34.615 8.61 0.00 45.85 2.83
2656 3562 7.605449 TCTTTCCATGTCCTTCATTTCAAATC 58.395 34.615 0.00 0.00 34.09 2.17
3011 3917 0.323360 TAACAGAACCAGGGCCATGC 60.323 55.000 13.13 0.00 0.00 4.06
3069 3982 5.545588 AGACTTGGATCCATGAACGATATG 58.454 41.667 29.18 4.75 0.00 1.78
3190 4104 4.021368 TGCCTCTTGGTTCAGTCTAAGTAC 60.021 45.833 0.00 0.00 35.27 2.73
3221 4135 4.221924 TGCAGGAGTTGTGTATACTAGCAA 59.778 41.667 4.17 4.50 30.29 3.91
3380 4294 6.480981 GGCATAGAAGCATTTAAATTGCACAT 59.519 34.615 16.47 7.65 35.83 3.21
3464 4381 3.230134 TCCACCAAAACCAGAAATGAGG 58.770 45.455 0.00 0.00 0.00 3.86
3615 4532 8.455682 GTCTACTGCTAGTGCTATATTAGGAAG 58.544 40.741 0.00 0.00 40.48 3.46
3682 4606 1.890489 TCTCGATGGACAAGACCGAAA 59.110 47.619 0.00 0.00 0.00 3.46
3727 4651 6.099701 GCCACCTGAAAATAAGGGGAAATATT 59.900 38.462 0.00 0.00 41.09 1.28
3990 4914 1.667724 CACCCGACAATCAGCAGAATC 59.332 52.381 0.00 0.00 0.00 2.52
4079 5003 8.999431 GTGAACCTGTAAATTTCAGATAACAGA 58.001 33.333 15.09 0.00 37.18 3.41
4263 5187 1.944032 AGCGGTGACAAACGTACTTT 58.056 45.000 0.00 0.00 0.00 2.66
4270 5194 2.610374 TCACTTGTTAGCGGTGACAAAC 59.390 45.455 22.73 8.51 35.54 2.93
4294 5218 8.586570 TGCTTGTAAATTTTCAGGTTGTTATG 57.413 30.769 8.37 0.00 0.00 1.90
4451 5380 2.171448 GGGCATCTCTTACACATCTGGT 59.829 50.000 0.00 0.00 0.00 4.00
4460 5389 3.274288 CTGTGAAAGGGGCATCTCTTAC 58.726 50.000 0.00 0.00 0.00 2.34
4462 5391 1.707427 ACTGTGAAAGGGGCATCTCTT 59.293 47.619 0.00 0.00 0.00 2.85
4492 5421 0.034186 ATGTCCCCGTGAATGCATGT 60.034 50.000 0.00 0.00 0.00 3.21
4517 5452 6.149308 TGGAATTACGGAATAGCATTAGCATG 59.851 38.462 0.00 0.00 45.49 4.06
4583 5521 1.619654 TCCCTTTGCCTTCACATGTG 58.380 50.000 20.18 20.18 0.00 3.21
4605 5543 1.369091 GCCACAATGTAGCTCCGGTG 61.369 60.000 0.00 0.00 0.00 4.94
4811 5753 1.659098 CTGCGACAAGTAATTCGGGAC 59.341 52.381 0.00 0.00 35.73 4.46
4812 5754 1.546923 TCTGCGACAAGTAATTCGGGA 59.453 47.619 0.00 0.00 35.73 5.14
4813 5755 2.004583 TCTGCGACAAGTAATTCGGG 57.995 50.000 0.00 0.00 35.73 5.14
4814 5756 4.334443 CATTTCTGCGACAAGTAATTCGG 58.666 43.478 0.00 0.00 35.73 4.30
4815 5757 4.092821 TCCATTTCTGCGACAAGTAATTCG 59.907 41.667 0.00 0.00 38.31 3.34
4816 5758 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
4817 5759 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
4818 5760 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
4819 5761 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
4820 5762 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
4821 5763 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
4822 5764 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
4823 5765 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
4824 5766 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
4825 5767 6.844696 TTTAGATACATCCATTTCTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
4826 5768 7.498900 ACATTTTAGATACATCCATTTCTGCGA 59.501 33.333 0.00 0.00 0.00 5.10
4827 5769 7.642669 ACATTTTAGATACATCCATTTCTGCG 58.357 34.615 0.00 0.00 0.00 5.18
4828 5770 8.844244 AGACATTTTAGATACATCCATTTCTGC 58.156 33.333 0.00 0.00 0.00 4.26
4850 5792 9.367160 TGTCATAGAAATGGATGTATCTAGACA 57.633 33.333 0.00 0.00 34.27 3.41
4859 5801 9.125026 GGAATTACTTGTCATAGAAATGGATGT 57.875 33.333 0.00 0.00 33.61 3.06
4860 5802 8.285394 CGGAATTACTTGTCATAGAAATGGATG 58.715 37.037 0.00 0.00 33.61 3.51
4861 5803 8.210946 TCGGAATTACTTGTCATAGAAATGGAT 58.789 33.333 0.00 0.00 33.61 3.41
4862 5804 7.561251 TCGGAATTACTTGTCATAGAAATGGA 58.439 34.615 0.00 0.00 33.61 3.41
4863 5805 7.786178 TCGGAATTACTTGTCATAGAAATGG 57.214 36.000 0.00 0.00 33.61 3.16
4864 5806 7.846107 CGTTCGGAATTACTTGTCATAGAAATG 59.154 37.037 0.00 0.00 0.00 2.32
4865 5807 7.011109 CCGTTCGGAATTACTTGTCATAGAAAT 59.989 37.037 5.19 0.00 0.00 2.17
4866 5808 6.311935 CCGTTCGGAATTACTTGTCATAGAAA 59.688 38.462 5.19 0.00 0.00 2.52
4867 5809 5.808540 CCGTTCGGAATTACTTGTCATAGAA 59.191 40.000 5.19 0.00 0.00 2.10
4868 5810 5.125900 TCCGTTCGGAATTACTTGTCATAGA 59.874 40.000 11.66 0.00 0.00 1.98
4869 5811 5.345702 TCCGTTCGGAATTACTTGTCATAG 58.654 41.667 11.66 0.00 0.00 2.23
4870 5812 5.327616 TCCGTTCGGAATTACTTGTCATA 57.672 39.130 11.66 0.00 0.00 2.15
4871 5813 4.181578 CTCCGTTCGGAATTACTTGTCAT 58.818 43.478 14.79 0.00 33.41 3.06
4872 5814 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
4873 5815 2.347755 GCTCCGTTCGGAATTACTTGTC 59.652 50.000 14.79 0.00 33.41 3.18
4874 5816 2.344025 GCTCCGTTCGGAATTACTTGT 58.656 47.619 14.79 0.00 33.41 3.16
4875 5817 1.323534 CGCTCCGTTCGGAATTACTTG 59.676 52.381 14.79 3.16 33.41 3.16
4876 5818 1.203052 TCGCTCCGTTCGGAATTACTT 59.797 47.619 14.79 0.00 33.41 2.24
4877 5819 0.813184 TCGCTCCGTTCGGAATTACT 59.187 50.000 14.79 0.00 33.41 2.24
4878 5820 1.197910 CTCGCTCCGTTCGGAATTAC 58.802 55.000 14.79 4.69 33.41 1.89
4879 5821 0.813184 ACTCGCTCCGTTCGGAATTA 59.187 50.000 14.79 2.82 33.41 1.40
4880 5822 0.813184 TACTCGCTCCGTTCGGAATT 59.187 50.000 14.79 0.00 33.41 2.17
4881 5823 0.381089 CTACTCGCTCCGTTCGGAAT 59.619 55.000 14.79 2.09 33.41 3.01
4882 5824 1.651240 CCTACTCGCTCCGTTCGGAA 61.651 60.000 14.79 0.04 33.41 4.30
4883 5825 2.110967 CCTACTCGCTCCGTTCGGA 61.111 63.158 13.34 13.34 0.00 4.55
4884 5826 1.930908 AACCTACTCGCTCCGTTCGG 61.931 60.000 4.74 4.74 0.00 4.30
4885 5827 0.797249 CAACCTACTCGCTCCGTTCG 60.797 60.000 0.00 0.00 0.00 3.95
4886 5828 1.077089 GCAACCTACTCGCTCCGTTC 61.077 60.000 0.00 0.00 0.00 3.95
4887 5829 1.080025 GCAACCTACTCGCTCCGTT 60.080 57.895 0.00 0.00 0.00 4.44
4888 5830 1.533469 AAGCAACCTACTCGCTCCGT 61.533 55.000 0.00 0.00 34.11 4.69
4889 5831 1.078759 CAAGCAACCTACTCGCTCCG 61.079 60.000 0.00 0.00 34.11 4.63
4890 5832 0.037232 ACAAGCAACCTACTCGCTCC 60.037 55.000 0.00 0.00 34.11 4.70
4891 5833 1.071605 CACAAGCAACCTACTCGCTC 58.928 55.000 0.00 0.00 34.11 5.03
4892 5834 0.679505 TCACAAGCAACCTACTCGCT 59.320 50.000 0.00 0.00 37.68 4.93
4893 5835 1.726853 ATCACAAGCAACCTACTCGC 58.273 50.000 0.00 0.00 0.00 5.03
4894 5836 5.812642 AGATTAATCACAAGCAACCTACTCG 59.187 40.000 17.56 0.00 0.00 4.18
4895 5837 7.334421 TCAAGATTAATCACAAGCAACCTACTC 59.666 37.037 17.56 0.00 0.00 2.59
4930 5872 1.534729 GGGAATCGGAGCAACACTTT 58.465 50.000 0.00 0.00 0.00 2.66
4965 5907 1.499007 TCCTGTTGGCCTTTTCCTCTT 59.501 47.619 3.32 0.00 0.00 2.85
5039 5984 1.376466 GGCCGTATGCATCTCCCAT 59.624 57.895 0.19 0.00 43.89 4.00
5140 6085 6.838612 CACCCCTTTATCATTTTGGATAGGAA 59.161 38.462 0.00 0.00 31.77 3.36
5173 6118 0.905337 GAGTGGTCTGGGTAGTGGCT 60.905 60.000 0.00 0.00 0.00 4.75
5288 6233 2.799916 GGCGACGACACACGAGTC 60.800 66.667 0.00 0.00 45.77 3.36
5319 6264 5.010516 CCTCAATATGATCTGAAGACGGACT 59.989 44.000 0.00 0.00 33.97 3.85
5410 6355 1.323271 ATGCACGGAGATGGACTCGT 61.323 55.000 0.00 0.00 45.76 4.18
5457 6403 4.338539 GGCGCCGGATATCGACGT 62.339 66.667 12.58 0.00 46.13 4.34
5470 6416 1.019673 ATCTCACACATTGATGGCGC 58.980 50.000 0.00 0.00 32.17 6.53
5557 6504 1.670295 TCGGACGATGATGGCATTTTG 59.330 47.619 0.00 0.00 34.11 2.44
5562 6509 1.367471 GGATCGGACGATGATGGCA 59.633 57.895 12.40 0.00 34.60 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.