Multiple sequence alignment - TraesCS4B01G141300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G141300 chr4B 100.000 4025 0 0 1 4025 185912016 185907992 0.000000e+00 7433.0
1 TraesCS4B01G141300 chr4B 83.862 2144 272 46 998 3098 186592970 186590858 0.000000e+00 1975.0
2 TraesCS4B01G141300 chr4D 96.740 2761 76 7 516 3267 122275569 122272814 0.000000e+00 4588.0
3 TraesCS4B01G141300 chr4D 84.745 2137 263 32 998 3098 122287415 122285306 0.000000e+00 2082.0
4 TraesCS4B01G141300 chr4D 92.982 399 26 2 3389 3786 122272758 122272361 7.500000e-162 580.0
5 TraesCS4B01G141300 chr4D 95.312 256 12 0 3770 4025 122272287 122272032 1.350000e-109 407.0
6 TraesCS4B01G141300 chr4D 96.471 170 4 1 3243 3410 75782221 75782052 3.060000e-71 279.0
7 TraesCS4B01G141300 chr4D 88.406 138 16 0 240 377 207367265 207367128 2.490000e-37 167.0
8 TraesCS4B01G141300 chr4A 95.717 2755 94 14 514 3265 448091637 448094370 0.000000e+00 4412.0
9 TraesCS4B01G141300 chr4A 84.171 2110 272 36 992 3068 447791680 447793760 0.000000e+00 1989.0
10 TraesCS4B01G141300 chr4A 95.090 387 18 1 3400 3786 448094446 448094831 3.440000e-170 608.0
11 TraesCS4B01G141300 chr4A 93.307 254 17 0 3772 4025 448094901 448095154 3.800000e-100 375.0
12 TraesCS4B01G141300 chr5D 95.930 172 5 1 3243 3412 25039976 25040147 1.100000e-70 278.0
13 TraesCS4B01G141300 chr5D 95.455 176 5 2 3245 3418 512663376 512663550 1.100000e-70 278.0
14 TraesCS4B01G141300 chr5A 95.429 175 6 1 3244 3416 290391694 290391868 1.100000e-70 278.0
15 TraesCS4B01G141300 chr5A 85.876 177 19 3 3855 4025 671167577 671167753 2.470000e-42 183.0
16 TraesCS4B01G141300 chr2D 94.944 178 8 1 3241 3417 576955380 576955557 1.100000e-70 278.0
17 TraesCS4B01G141300 chr1D 94.944 178 6 2 3245 3420 238940382 238940206 3.960000e-70 276.0
18 TraesCS4B01G141300 chr1A 94.475 181 6 3 3246 3423 233421341 233421520 3.960000e-70 276.0
19 TraesCS4B01G141300 chr3A 93.011 186 10 2 3243 3426 251260266 251260082 6.630000e-68 268.0
20 TraesCS4B01G141300 chr3A 85.315 143 21 0 48 190 662836532 662836390 9.010000e-32 148.0
21 TraesCS4B01G141300 chr3A 83.333 156 24 2 35 190 662860146 662860299 4.190000e-30 143.0
22 TraesCS4B01G141300 chr6B 91.534 189 14 1 3226 3412 711383866 711383678 3.990000e-65 259.0
23 TraesCS4B01G141300 chr6B 88.889 126 14 0 252 377 29343656 29343781 5.390000e-34 156.0
24 TraesCS4B01G141300 chr3D 81.595 163 25 5 35 196 110218699 110218541 3.260000e-26 130.0
25 TraesCS4B01G141300 chr6A 82.517 143 25 0 48 190 117358542 117358400 4.220000e-25 126.0
26 TraesCS4B01G141300 chr3B 83.065 124 20 1 52 175 643269008 643268886 1.180000e-20 111.0
27 TraesCS4B01G141300 chr2A 79.375 160 25 8 38 192 102896371 102896215 5.500000e-19 106.0
28 TraesCS4B01G141300 chr7D 92.857 70 5 0 305 374 45927636 45927705 7.120000e-18 102.0
29 TraesCS4B01G141300 chr7D 80.612 98 8 8 35 129 418959392 418959303 9.340000e-07 65.8
30 TraesCS4B01G141300 chr7B 80.612 98 8 8 35 129 434835670 434835581 9.340000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G141300 chr4B 185907992 185912016 4024 True 7433.000000 7433 100.000000 1 4025 1 chr4B.!!$R1 4024
1 TraesCS4B01G141300 chr4B 186590858 186592970 2112 True 1975.000000 1975 83.862000 998 3098 1 chr4B.!!$R2 2100
2 TraesCS4B01G141300 chr4D 122285306 122287415 2109 True 2082.000000 2082 84.745000 998 3098 1 chr4D.!!$R2 2100
3 TraesCS4B01G141300 chr4D 122272032 122275569 3537 True 1858.333333 4588 95.011333 516 4025 3 chr4D.!!$R4 3509
4 TraesCS4B01G141300 chr4A 447791680 447793760 2080 False 1989.000000 1989 84.171000 992 3068 1 chr4A.!!$F1 2076
5 TraesCS4B01G141300 chr4A 448091637 448095154 3517 False 1798.333333 4412 94.704667 514 4025 3 chr4A.!!$F2 3511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 392 0.036732 TGGGACCTGACATGCTGAAC 59.963 55.000 0.00 0.0 0.00 3.18 F
392 393 0.326264 GGGACCTGACATGCTGAACT 59.674 55.000 0.00 0.0 0.00 3.01 F
1537 1591 0.320683 CGACCAGGACATGCTCAACA 60.321 55.000 0.00 0.0 0.00 3.33 F
2568 2637 1.308216 CCCCAGGGATCAGGTCCTT 60.308 63.158 7.25 0.0 46.91 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1370 1424 0.179073 CGGCCGTGAGATCTGGATTT 60.179 55.000 19.50 0.0 0.0 2.17 R
1967 2036 0.962356 CTTTGGGGTCGAATGCTGCT 60.962 55.000 0.00 0.0 0.0 4.24 R
2859 2928 1.005097 TCTGGATTCAATGGCAGCTGT 59.995 47.619 16.64 0.0 0.0 4.40 R
3652 3730 0.179250 CATCGTCGGTGCAAACTTCG 60.179 55.000 0.00 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.752005 TCAATAAAATCCTAGTCTGATTTGGG 57.248 34.615 6.30 0.00 40.57 4.12
27 28 8.336235 TCAATAAAATCCTAGTCTGATTTGGGT 58.664 33.333 6.30 0.00 40.57 4.51
28 29 8.408601 CAATAAAATCCTAGTCTGATTTGGGTG 58.591 37.037 6.30 2.82 40.57 4.61
29 30 4.510167 AATCCTAGTCTGATTTGGGTGG 57.490 45.455 1.29 0.00 0.00 4.61
30 31 2.915869 TCCTAGTCTGATTTGGGTGGT 58.084 47.619 1.29 0.00 0.00 4.16
31 32 2.838202 TCCTAGTCTGATTTGGGTGGTC 59.162 50.000 1.29 0.00 0.00 4.02
32 33 2.092914 CCTAGTCTGATTTGGGTGGTCC 60.093 54.545 0.00 0.00 0.00 4.46
33 34 1.444933 AGTCTGATTTGGGTGGTCCA 58.555 50.000 0.00 0.00 45.43 4.02
34 35 1.995542 AGTCTGATTTGGGTGGTCCAT 59.004 47.619 0.00 0.00 46.52 3.41
35 36 2.379907 AGTCTGATTTGGGTGGTCCATT 59.620 45.455 0.00 0.00 46.52 3.16
36 37 2.493278 GTCTGATTTGGGTGGTCCATTG 59.507 50.000 0.00 0.00 46.52 2.82
37 38 2.378208 TCTGATTTGGGTGGTCCATTGA 59.622 45.455 0.00 0.00 46.52 2.57
38 39 2.493278 CTGATTTGGGTGGTCCATTGAC 59.507 50.000 0.00 0.00 46.52 3.18
185 186 8.898983 AAGTTGATCAAATTTTGCAAAGTTTG 57.101 26.923 35.84 35.84 43.05 2.93
216 217 5.500645 AAAGAGAAACTTTCGGTTCAAGG 57.499 39.130 0.00 0.00 44.36 3.61
217 218 2.879026 AGAGAAACTTTCGGTTCAAGGC 59.121 45.455 0.00 0.00 37.12 4.35
218 219 2.879026 GAGAAACTTTCGGTTCAAGGCT 59.121 45.455 0.00 0.00 37.12 4.58
219 220 4.062991 GAGAAACTTTCGGTTCAAGGCTA 58.937 43.478 0.00 0.00 37.12 3.93
220 221 4.652822 AGAAACTTTCGGTTCAAGGCTAT 58.347 39.130 0.00 0.00 37.12 2.97
221 222 5.070685 AGAAACTTTCGGTTCAAGGCTATT 58.929 37.500 0.00 0.00 37.12 1.73
222 223 5.181433 AGAAACTTTCGGTTCAAGGCTATTC 59.819 40.000 0.00 0.00 37.12 1.75
223 224 4.015872 ACTTTCGGTTCAAGGCTATTCA 57.984 40.909 0.00 0.00 0.00 2.57
224 225 4.003648 ACTTTCGGTTCAAGGCTATTCAG 58.996 43.478 0.00 0.00 0.00 3.02
225 226 3.973206 TTCGGTTCAAGGCTATTCAGA 57.027 42.857 0.00 0.00 0.00 3.27
226 227 3.247006 TCGGTTCAAGGCTATTCAGAC 57.753 47.619 0.00 0.00 0.00 3.51
227 228 2.565391 TCGGTTCAAGGCTATTCAGACA 59.435 45.455 0.00 0.00 28.86 3.41
228 229 2.673368 CGGTTCAAGGCTATTCAGACAC 59.327 50.000 0.00 0.00 28.86 3.67
229 230 3.617531 CGGTTCAAGGCTATTCAGACACT 60.618 47.826 0.00 0.00 28.86 3.55
230 231 4.327680 GGTTCAAGGCTATTCAGACACTT 58.672 43.478 0.00 0.00 28.86 3.16
231 232 4.762251 GGTTCAAGGCTATTCAGACACTTT 59.238 41.667 0.00 0.00 28.86 2.66
232 233 5.938125 GGTTCAAGGCTATTCAGACACTTTA 59.062 40.000 0.00 0.00 28.86 1.85
233 234 6.430000 GGTTCAAGGCTATTCAGACACTTTAA 59.570 38.462 0.00 0.00 28.86 1.52
234 235 7.361286 GGTTCAAGGCTATTCAGACACTTTAAG 60.361 40.741 0.00 0.00 28.86 1.85
235 236 5.643777 TCAAGGCTATTCAGACACTTTAAGC 59.356 40.000 0.00 0.00 28.86 3.09
236 237 5.165961 AGGCTATTCAGACACTTTAAGCA 57.834 39.130 0.00 0.00 28.86 3.91
237 238 5.560724 AGGCTATTCAGACACTTTAAGCAA 58.439 37.500 0.00 0.00 28.86 3.91
238 239 6.003950 AGGCTATTCAGACACTTTAAGCAAA 58.996 36.000 0.00 0.00 28.86 3.68
239 240 6.150140 AGGCTATTCAGACACTTTAAGCAAAG 59.850 38.462 0.00 0.00 45.63 2.77
252 253 7.685532 CTTTAAGCAAAGTTTCCACTTCTTC 57.314 36.000 0.00 0.00 42.89 2.87
253 254 3.971032 AGCAAAGTTTCCACTTCTTCG 57.029 42.857 0.00 0.00 42.89 3.79
254 255 2.618709 AGCAAAGTTTCCACTTCTTCGG 59.381 45.455 0.00 0.00 42.89 4.30
255 256 2.357952 GCAAAGTTTCCACTTCTTCGGT 59.642 45.455 0.00 0.00 42.89 4.69
256 257 3.181490 GCAAAGTTTCCACTTCTTCGGTT 60.181 43.478 0.00 0.00 42.89 4.44
257 258 4.676986 GCAAAGTTTCCACTTCTTCGGTTT 60.677 41.667 0.00 0.00 42.89 3.27
258 259 5.407502 CAAAGTTTCCACTTCTTCGGTTTT 58.592 37.500 0.00 0.00 42.89 2.43
259 260 5.654603 AAGTTTCCACTTCTTCGGTTTTT 57.345 34.783 0.00 0.00 39.15 1.94
260 261 4.993905 AGTTTCCACTTCTTCGGTTTTTG 58.006 39.130 0.00 0.00 0.00 2.44
261 262 4.461431 AGTTTCCACTTCTTCGGTTTTTGT 59.539 37.500 0.00 0.00 0.00 2.83
262 263 5.047590 AGTTTCCACTTCTTCGGTTTTTGTT 60.048 36.000 0.00 0.00 0.00 2.83
263 264 5.394224 TTCCACTTCTTCGGTTTTTGTTT 57.606 34.783 0.00 0.00 0.00 2.83
264 265 5.394224 TCCACTTCTTCGGTTTTTGTTTT 57.606 34.783 0.00 0.00 0.00 2.43
265 266 5.404096 TCCACTTCTTCGGTTTTTGTTTTC 58.596 37.500 0.00 0.00 0.00 2.29
266 267 5.184287 TCCACTTCTTCGGTTTTTGTTTTCT 59.816 36.000 0.00 0.00 0.00 2.52
267 268 5.867174 CCACTTCTTCGGTTTTTGTTTTCTT 59.133 36.000 0.00 0.00 0.00 2.52
268 269 7.030768 CCACTTCTTCGGTTTTTGTTTTCTTA 58.969 34.615 0.00 0.00 0.00 2.10
269 270 7.704899 CCACTTCTTCGGTTTTTGTTTTCTTAT 59.295 33.333 0.00 0.00 0.00 1.73
270 271 9.083080 CACTTCTTCGGTTTTTGTTTTCTTATT 57.917 29.630 0.00 0.00 0.00 1.40
271 272 9.297586 ACTTCTTCGGTTTTTGTTTTCTTATTC 57.702 29.630 0.00 0.00 0.00 1.75
272 273 7.901874 TCTTCGGTTTTTGTTTTCTTATTCG 57.098 32.000 0.00 0.00 0.00 3.34
273 274 6.913673 TCTTCGGTTTTTGTTTTCTTATTCGG 59.086 34.615 0.00 0.00 0.00 4.30
274 275 5.521544 TCGGTTTTTGTTTTCTTATTCGGG 58.478 37.500 0.00 0.00 0.00 5.14
275 276 5.298777 TCGGTTTTTGTTTTCTTATTCGGGA 59.701 36.000 0.00 0.00 0.00 5.14
276 277 6.016108 TCGGTTTTTGTTTTCTTATTCGGGAT 60.016 34.615 0.00 0.00 0.00 3.85
277 278 6.307077 CGGTTTTTGTTTTCTTATTCGGGATC 59.693 38.462 0.00 0.00 0.00 3.36
278 279 7.375834 GGTTTTTGTTTTCTTATTCGGGATCT 58.624 34.615 0.00 0.00 0.00 2.75
279 280 7.870954 GGTTTTTGTTTTCTTATTCGGGATCTT 59.129 33.333 0.00 0.00 0.00 2.40
280 281 8.699749 GTTTTTGTTTTCTTATTCGGGATCTTG 58.300 33.333 0.00 0.00 0.00 3.02
281 282 7.519032 TTTGTTTTCTTATTCGGGATCTTGT 57.481 32.000 0.00 0.00 0.00 3.16
282 283 7.519032 TTGTTTTCTTATTCGGGATCTTGTT 57.481 32.000 0.00 0.00 0.00 2.83
283 284 7.519032 TGTTTTCTTATTCGGGATCTTGTTT 57.481 32.000 0.00 0.00 0.00 2.83
284 285 7.947282 TGTTTTCTTATTCGGGATCTTGTTTT 58.053 30.769 0.00 0.00 0.00 2.43
285 286 8.417884 TGTTTTCTTATTCGGGATCTTGTTTTT 58.582 29.630 0.00 0.00 0.00 1.94
286 287 9.902196 GTTTTCTTATTCGGGATCTTGTTTTTA 57.098 29.630 0.00 0.00 0.00 1.52
290 291 8.682710 TCTTATTCGGGATCTTGTTTTTAATGG 58.317 33.333 0.00 0.00 0.00 3.16
291 292 6.850752 ATTCGGGATCTTGTTTTTAATGGT 57.149 33.333 0.00 0.00 0.00 3.55
292 293 6.658188 TTCGGGATCTTGTTTTTAATGGTT 57.342 33.333 0.00 0.00 0.00 3.67
293 294 6.658188 TCGGGATCTTGTTTTTAATGGTTT 57.342 33.333 0.00 0.00 0.00 3.27
294 295 7.056844 TCGGGATCTTGTTTTTAATGGTTTT 57.943 32.000 0.00 0.00 0.00 2.43
295 296 7.501844 TCGGGATCTTGTTTTTAATGGTTTTT 58.498 30.769 0.00 0.00 0.00 1.94
296 297 8.639761 TCGGGATCTTGTTTTTAATGGTTTTTA 58.360 29.630 0.00 0.00 0.00 1.52
297 298 9.430623 CGGGATCTTGTTTTTAATGGTTTTTAT 57.569 29.630 0.00 0.00 0.00 1.40
309 310 8.514136 TTAATGGTTTTTATCTTTGCAACTCG 57.486 30.769 0.00 0.00 0.00 4.18
310 311 4.295051 TGGTTTTTATCTTTGCAACTCGC 58.705 39.130 0.00 0.00 42.89 5.03
311 312 3.360758 GGTTTTTATCTTTGCAACTCGCG 59.639 43.478 0.00 0.00 46.97 5.87
312 313 4.215965 GTTTTTATCTTTGCAACTCGCGA 58.784 39.130 9.26 9.26 46.97 5.87
313 314 4.678509 TTTTATCTTTGCAACTCGCGAT 57.321 36.364 10.36 0.00 46.97 4.58
314 315 4.678509 TTTATCTTTGCAACTCGCGATT 57.321 36.364 10.36 0.00 46.97 3.34
315 316 4.678509 TTATCTTTGCAACTCGCGATTT 57.321 36.364 10.36 7.81 46.97 2.17
316 317 3.559238 ATCTTTGCAACTCGCGATTTT 57.441 38.095 10.36 2.75 46.97 1.82
317 318 2.916111 TCTTTGCAACTCGCGATTTTC 58.084 42.857 10.36 5.43 46.97 2.29
318 319 1.638996 CTTTGCAACTCGCGATTTTCG 59.361 47.619 10.36 0.00 46.97 3.46
331 332 4.921470 CGATTTTCGCCAGAGAACTAAA 57.079 40.909 0.00 0.00 31.14 1.85
332 333 5.470845 CGATTTTCGCCAGAGAACTAAAT 57.529 39.130 0.00 0.00 31.14 1.40
333 334 5.493735 CGATTTTCGCCAGAGAACTAAATC 58.506 41.667 0.00 0.00 31.14 2.17
334 335 5.502544 CGATTTTCGCCAGAGAACTAAATCC 60.503 44.000 0.00 0.00 31.14 3.01
335 336 3.973206 TTCGCCAGAGAACTAAATCCA 57.027 42.857 0.00 0.00 0.00 3.41
336 337 3.973206 TCGCCAGAGAACTAAATCCAA 57.027 42.857 0.00 0.00 0.00 3.53
337 338 3.861840 TCGCCAGAGAACTAAATCCAAG 58.138 45.455 0.00 0.00 0.00 3.61
338 339 3.260884 TCGCCAGAGAACTAAATCCAAGT 59.739 43.478 0.00 0.00 0.00 3.16
339 340 4.003648 CGCCAGAGAACTAAATCCAAGTT 58.996 43.478 0.00 0.00 39.84 2.66
340 341 4.142816 CGCCAGAGAACTAAATCCAAGTTG 60.143 45.833 0.00 0.00 37.31 3.16
341 342 5.003804 GCCAGAGAACTAAATCCAAGTTGA 58.996 41.667 3.87 0.00 37.31 3.18
342 343 5.106515 GCCAGAGAACTAAATCCAAGTTGAC 60.107 44.000 3.87 0.00 37.31 3.18
343 344 5.120830 CCAGAGAACTAAATCCAAGTTGACG 59.879 44.000 3.87 0.00 37.31 4.35
344 345 5.926542 CAGAGAACTAAATCCAAGTTGACGA 59.073 40.000 3.87 0.00 37.31 4.20
345 346 6.423905 CAGAGAACTAAATCCAAGTTGACGAA 59.576 38.462 3.87 0.00 37.31 3.85
346 347 6.647067 AGAGAACTAAATCCAAGTTGACGAAG 59.353 38.462 3.87 0.00 37.31 3.79
347 348 6.522054 AGAACTAAATCCAAGTTGACGAAGA 58.478 36.000 3.87 0.00 37.31 2.87
348 349 7.162082 AGAACTAAATCCAAGTTGACGAAGAT 58.838 34.615 3.87 0.00 37.31 2.40
349 350 6.969828 ACTAAATCCAAGTTGACGAAGATC 57.030 37.500 3.87 0.00 0.00 2.75
350 351 6.464222 ACTAAATCCAAGTTGACGAAGATCA 58.536 36.000 3.87 0.00 0.00 2.92
351 352 7.106239 ACTAAATCCAAGTTGACGAAGATCAT 58.894 34.615 3.87 0.00 0.00 2.45
352 353 5.808042 AATCCAAGTTGACGAAGATCATG 57.192 39.130 3.87 0.00 0.00 3.07
353 354 4.535526 TCCAAGTTGACGAAGATCATGA 57.464 40.909 3.87 0.00 0.00 3.07
354 355 5.089970 TCCAAGTTGACGAAGATCATGAT 57.910 39.130 8.25 8.25 0.00 2.45
355 356 5.491070 TCCAAGTTGACGAAGATCATGATT 58.509 37.500 10.14 0.00 0.00 2.57
356 357 5.939883 TCCAAGTTGACGAAGATCATGATTT 59.060 36.000 10.14 0.28 0.00 2.17
357 358 6.025896 CCAAGTTGACGAAGATCATGATTTG 58.974 40.000 10.14 6.10 0.00 2.32
358 359 5.808042 AGTTGACGAAGATCATGATTTGG 57.192 39.130 10.14 9.68 0.00 3.28
359 360 4.637534 AGTTGACGAAGATCATGATTTGGG 59.362 41.667 10.14 2.68 0.00 4.12
360 361 2.945008 TGACGAAGATCATGATTTGGGC 59.055 45.455 10.14 9.92 0.00 5.36
361 362 3.209410 GACGAAGATCATGATTTGGGCT 58.791 45.455 10.14 0.00 0.00 5.19
362 363 2.947652 ACGAAGATCATGATTTGGGCTG 59.052 45.455 10.14 0.00 0.00 4.85
363 364 2.292569 CGAAGATCATGATTTGGGCTGG 59.707 50.000 10.14 0.00 0.00 4.85
364 365 1.700955 AGATCATGATTTGGGCTGGC 58.299 50.000 10.14 0.00 0.00 4.85
365 366 1.063492 AGATCATGATTTGGGCTGGCA 60.063 47.619 10.14 0.00 0.00 4.92
366 367 1.068127 GATCATGATTTGGGCTGGCAC 59.932 52.381 10.14 0.00 0.00 5.01
367 368 1.140161 CATGATTTGGGCTGGCACG 59.860 57.895 2.88 0.00 0.00 5.34
368 369 2.053865 ATGATTTGGGCTGGCACGG 61.054 57.895 2.88 0.00 38.10 4.94
369 370 2.676471 GATTTGGGCTGGCACGGT 60.676 61.111 2.88 0.00 36.83 4.83
370 371 1.377987 GATTTGGGCTGGCACGGTA 60.378 57.895 2.88 0.00 36.83 4.02
371 372 0.751643 GATTTGGGCTGGCACGGTAT 60.752 55.000 2.88 0.00 36.83 2.73
372 373 0.324275 ATTTGGGCTGGCACGGTATT 60.324 50.000 2.88 0.00 36.83 1.89
373 374 1.247419 TTTGGGCTGGCACGGTATTG 61.247 55.000 2.88 0.00 36.83 1.90
374 375 2.828549 GGGCTGGCACGGTATTGG 60.829 66.667 2.88 0.00 36.83 3.16
375 376 2.828549 GGCTGGCACGGTATTGGG 60.829 66.667 0.00 0.00 36.83 4.12
376 377 2.270850 GCTGGCACGGTATTGGGA 59.729 61.111 0.00 0.00 36.83 4.37
377 378 2.112815 GCTGGCACGGTATTGGGAC 61.113 63.158 0.00 0.00 36.83 4.46
378 379 1.451387 CTGGCACGGTATTGGGACC 60.451 63.158 0.00 0.00 36.00 4.46
379 380 1.910580 CTGGCACGGTATTGGGACCT 61.911 60.000 0.00 0.00 37.34 3.85
380 381 1.451387 GGCACGGTATTGGGACCTG 60.451 63.158 0.00 0.00 37.34 4.00
381 382 1.600107 GCACGGTATTGGGACCTGA 59.400 57.895 0.00 0.00 37.34 3.86
382 383 0.743345 GCACGGTATTGGGACCTGAC 60.743 60.000 0.00 0.00 37.34 3.51
383 384 0.611200 CACGGTATTGGGACCTGACA 59.389 55.000 0.00 0.00 37.34 3.58
384 385 1.209504 CACGGTATTGGGACCTGACAT 59.790 52.381 0.00 0.00 37.34 3.06
385 386 1.209504 ACGGTATTGGGACCTGACATG 59.790 52.381 0.00 0.00 37.34 3.21
386 387 1.680338 GGTATTGGGACCTGACATGC 58.320 55.000 0.00 0.00 36.47 4.06
387 388 1.212935 GGTATTGGGACCTGACATGCT 59.787 52.381 0.00 0.00 36.47 3.79
388 389 2.292267 GTATTGGGACCTGACATGCTG 58.708 52.381 0.00 0.00 0.00 4.41
389 390 0.994247 ATTGGGACCTGACATGCTGA 59.006 50.000 0.00 0.00 0.00 4.26
390 391 0.770499 TTGGGACCTGACATGCTGAA 59.230 50.000 0.00 0.00 0.00 3.02
391 392 0.036732 TGGGACCTGACATGCTGAAC 59.963 55.000 0.00 0.00 0.00 3.18
392 393 0.326264 GGGACCTGACATGCTGAACT 59.674 55.000 0.00 0.00 0.00 3.01
393 394 1.271597 GGGACCTGACATGCTGAACTT 60.272 52.381 0.00 0.00 0.00 2.66
394 395 2.079925 GGACCTGACATGCTGAACTTC 58.920 52.381 0.00 0.00 0.00 3.01
395 396 2.079925 GACCTGACATGCTGAACTTCC 58.920 52.381 0.00 0.00 0.00 3.46
396 397 1.421268 ACCTGACATGCTGAACTTCCA 59.579 47.619 0.00 0.00 0.00 3.53
397 398 2.158623 ACCTGACATGCTGAACTTCCAA 60.159 45.455 0.00 0.00 0.00 3.53
398 399 2.886523 CCTGACATGCTGAACTTCCAAA 59.113 45.455 0.00 0.00 0.00 3.28
399 400 3.318839 CCTGACATGCTGAACTTCCAAAA 59.681 43.478 0.00 0.00 0.00 2.44
400 401 4.543692 CTGACATGCTGAACTTCCAAAAG 58.456 43.478 0.00 0.00 38.54 2.27
416 417 9.495572 ACTTCCAAAAGTTTTGTACATTCAAAA 57.504 25.926 23.29 0.00 43.28 2.44
440 441 8.502161 AAAACGAATTGATTCCTTAAAAGACG 57.498 30.769 0.00 0.00 33.28 4.18
441 442 6.178239 ACGAATTGATTCCTTAAAAGACGG 57.822 37.500 0.00 0.00 33.28 4.79
442 443 5.123344 ACGAATTGATTCCTTAAAAGACGGG 59.877 40.000 0.00 0.00 33.28 5.28
443 444 5.353123 CGAATTGATTCCTTAAAAGACGGGA 59.647 40.000 0.00 0.00 33.28 5.14
444 445 6.038271 CGAATTGATTCCTTAAAAGACGGGAT 59.962 38.462 0.00 0.00 33.28 3.85
445 446 7.415206 CGAATTGATTCCTTAAAAGACGGGATT 60.415 37.037 0.00 0.00 33.28 3.01
446 447 6.509418 TTGATTCCTTAAAAGACGGGATTG 57.491 37.500 0.00 0.00 0.00 2.67
447 448 5.811190 TGATTCCTTAAAAGACGGGATTGA 58.189 37.500 0.00 0.00 0.00 2.57
448 449 5.646360 TGATTCCTTAAAAGACGGGATTGAC 59.354 40.000 0.00 0.00 0.00 3.18
449 450 4.903045 TCCTTAAAAGACGGGATTGACT 57.097 40.909 0.00 0.00 0.00 3.41
450 451 6.363167 TTCCTTAAAAGACGGGATTGACTA 57.637 37.500 0.00 0.00 0.00 2.59
451 452 5.974108 TCCTTAAAAGACGGGATTGACTAG 58.026 41.667 0.00 0.00 0.00 2.57
452 453 5.482878 TCCTTAAAAGACGGGATTGACTAGT 59.517 40.000 0.00 0.00 0.00 2.57
453 454 6.664816 TCCTTAAAAGACGGGATTGACTAGTA 59.335 38.462 0.00 0.00 0.00 1.82
454 455 7.178983 TCCTTAAAAGACGGGATTGACTAGTAA 59.821 37.037 0.00 0.00 0.00 2.24
455 456 7.820872 CCTTAAAAGACGGGATTGACTAGTAAA 59.179 37.037 0.00 0.00 0.00 2.01
456 457 9.379791 CTTAAAAGACGGGATTGACTAGTAAAT 57.620 33.333 5.03 5.03 0.00 1.40
458 459 8.943909 AAAAGACGGGATTGACTAGTAAATAG 57.056 34.615 5.37 3.72 37.53 1.73
459 460 7.893124 AAGACGGGATTGACTAGTAAATAGA 57.107 36.000 5.37 0.00 35.30 1.98
460 461 7.893124 AGACGGGATTGACTAGTAAATAGAA 57.107 36.000 5.37 0.00 35.30 2.10
461 462 8.302515 AGACGGGATTGACTAGTAAATAGAAA 57.697 34.615 5.37 0.00 35.30 2.52
462 463 8.755977 AGACGGGATTGACTAGTAAATAGAAAA 58.244 33.333 5.37 0.00 35.30 2.29
463 464 9.543783 GACGGGATTGACTAGTAAATAGAAAAT 57.456 33.333 5.37 0.00 35.30 1.82
464 465 9.901172 ACGGGATTGACTAGTAAATAGAAAATT 57.099 29.630 5.37 0.00 35.30 1.82
483 484 9.533831 AGAAAATTACTGATATTTCACCCTTGT 57.466 29.630 0.00 0.00 34.91 3.16
484 485 9.573133 GAAAATTACTGATATTTCACCCTTGTG 57.427 33.333 0.00 0.00 44.18 3.33
494 495 3.407424 TCACCCTTGTGAGATTGTCAG 57.593 47.619 0.00 0.00 46.40 3.51
495 496 2.038952 TCACCCTTGTGAGATTGTCAGG 59.961 50.000 0.00 0.00 46.40 3.86
496 497 2.057922 ACCCTTGTGAGATTGTCAGGT 58.942 47.619 0.00 0.00 35.13 4.00
497 498 2.443255 ACCCTTGTGAGATTGTCAGGTT 59.557 45.455 0.00 0.00 35.13 3.50
498 499 3.117512 ACCCTTGTGAGATTGTCAGGTTT 60.118 43.478 0.00 0.00 35.13 3.27
499 500 3.254166 CCCTTGTGAGATTGTCAGGTTTG 59.746 47.826 0.00 0.00 35.13 2.93
500 501 3.885297 CCTTGTGAGATTGTCAGGTTTGT 59.115 43.478 0.00 0.00 35.13 2.83
501 502 5.063204 CCTTGTGAGATTGTCAGGTTTGTA 58.937 41.667 0.00 0.00 35.13 2.41
502 503 5.049405 CCTTGTGAGATTGTCAGGTTTGTAC 60.049 44.000 0.00 0.00 35.13 2.90
503 504 4.385825 TGTGAGATTGTCAGGTTTGTACC 58.614 43.478 0.00 0.00 45.39 3.34
551 552 7.280205 ACGAACTGAAATAAAACAGAGTGACTT 59.720 33.333 0.00 0.00 37.54 3.01
560 561 6.420913 AAAACAGAGTGACTTCCTAGCTTA 57.579 37.500 0.00 0.00 0.00 3.09
639 640 9.659830 GCCCTGTTCAATTAATTAATAAGTACG 57.340 33.333 11.07 7.64 0.00 3.67
738 739 0.779997 AAAGCCTCACCATCACCCTT 59.220 50.000 0.00 0.00 0.00 3.95
929 930 2.674380 GCAGGGCTTCACAGTGGG 60.674 66.667 0.00 0.00 0.00 4.61
951 952 7.014905 GTGGGGTAAATTCCACTTCTTTAAGTT 59.985 37.037 6.76 0.00 43.60 2.66
952 953 8.226112 TGGGGTAAATTCCACTTCTTTAAGTTA 58.774 33.333 0.00 0.00 43.60 2.24
953 954 8.737175 GGGGTAAATTCCACTTCTTTAAGTTAG 58.263 37.037 0.00 0.00 43.60 2.34
1496 1550 1.133407 CCCTAGCTCTGACTTCGTCAC 59.867 57.143 0.00 0.00 37.67 3.67
1537 1591 0.320683 CGACCAGGACATGCTCAACA 60.321 55.000 0.00 0.00 0.00 3.33
1568 1622 1.852157 AAAGGCATGGAGGAGGCGAA 61.852 55.000 0.00 0.00 35.18 4.70
1746 1809 1.515088 CGCACGAGAGCTGTTCGAT 60.515 57.895 20.45 5.65 40.36 3.59
1967 2036 3.254166 GGTGAGCTGCTGAAAAGAATCAA 59.746 43.478 7.01 0.00 0.00 2.57
2568 2637 1.308216 CCCCAGGGATCAGGTCCTT 60.308 63.158 7.25 0.00 46.91 3.36
2622 2691 4.743124 TCATCCATGGCATTATGAATGGT 58.257 39.130 19.77 9.95 40.44 3.55
2679 2748 3.307762 GGGAGGCACTGTTCAATTACTCT 60.308 47.826 0.00 0.00 41.55 3.24
2943 3012 2.349297 AGGACTTCGTCGTTGATGAC 57.651 50.000 0.00 0.00 32.65 3.06
3151 3227 6.926272 GCCATGAGGTAGTCAATTACTTCTAG 59.074 42.308 0.00 0.00 39.19 2.43
3260 3337 1.275573 GGCATATACTCCCTCCGTTCC 59.724 57.143 0.00 0.00 0.00 3.62
3261 3338 2.249139 GCATATACTCCCTCCGTTCCT 58.751 52.381 0.00 0.00 0.00 3.36
3265 3342 5.046520 GCATATACTCCCTCCGTTCCTAAAT 60.047 44.000 0.00 0.00 0.00 1.40
3266 3343 6.154021 GCATATACTCCCTCCGTTCCTAAATA 59.846 42.308 0.00 0.00 0.00 1.40
3267 3344 7.147707 GCATATACTCCCTCCGTTCCTAAATAT 60.148 40.741 0.00 0.00 0.00 1.28
3273 3350 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3274 3351 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3277 3354 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3279 3356 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3280 3357 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3293 3370 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3294 3371 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3295 3372 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3297 3374 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3299 3376 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3300 3377 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3301 3378 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3303 3380 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3304 3381 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3307 3384 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3314 3391 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3315 3392 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3316 3393 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3320 3397 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3323 3400 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3327 3404 5.006165 CGGAGCAAAATGAGTGAATCTACTC 59.994 44.000 0.00 0.00 45.71 2.59
3329 3406 7.268586 GGAGCAAAATGAGTGAATCTACTCTA 58.731 38.462 11.86 2.86 45.70 2.43
3330 3407 7.766278 GGAGCAAAATGAGTGAATCTACTCTAA 59.234 37.037 11.86 0.00 45.70 2.10
3332 3409 9.507329 AGCAAAATGAGTGAATCTACTCTAAAA 57.493 29.630 11.86 0.00 45.70 1.52
3368 3445 7.482654 ACATTCGTATGTGATAGTCCATTTG 57.517 36.000 6.89 0.00 43.29 2.32
3369 3446 7.272244 ACATTCGTATGTGATAGTCCATTTGA 58.728 34.615 6.89 0.00 43.29 2.69
3370 3447 7.768582 ACATTCGTATGTGATAGTCCATTTGAA 59.231 33.333 6.89 0.00 43.29 2.69
3371 3448 8.611757 CATTCGTATGTGATAGTCCATTTGAAA 58.388 33.333 0.00 0.00 0.00 2.69
3372 3449 8.731275 TTCGTATGTGATAGTCCATTTGAAAT 57.269 30.769 0.00 0.00 0.00 2.17
3373 3450 8.365399 TCGTATGTGATAGTCCATTTGAAATC 57.635 34.615 0.00 0.00 0.00 2.17
3374 3451 8.204160 TCGTATGTGATAGTCCATTTGAAATCT 58.796 33.333 0.00 0.00 0.00 2.40
3375 3452 8.491152 CGTATGTGATAGTCCATTTGAAATCTC 58.509 37.037 0.00 0.00 0.00 2.75
3376 3453 9.553064 GTATGTGATAGTCCATTTGAAATCTCT 57.447 33.333 0.00 0.00 0.00 3.10
3378 3455 8.948631 TGTGATAGTCCATTTGAAATCTCTAC 57.051 34.615 0.00 0.00 0.00 2.59
3379 3456 8.539544 TGTGATAGTCCATTTGAAATCTCTACA 58.460 33.333 0.00 0.00 0.00 2.74
3380 3457 9.383519 GTGATAGTCCATTTGAAATCTCTACAA 57.616 33.333 0.00 0.00 0.00 2.41
3381 3458 9.958180 TGATAGTCCATTTGAAATCTCTACAAA 57.042 29.630 0.00 0.00 37.79 2.83
3384 3461 8.329203 AGTCCATTTGAAATCTCTACAAAGAC 57.671 34.615 0.00 0.00 37.04 3.01
3385 3462 7.939039 AGTCCATTTGAAATCTCTACAAAGACA 59.061 33.333 0.00 0.00 37.04 3.41
3386 3463 8.567948 GTCCATTTGAAATCTCTACAAAGACAA 58.432 33.333 0.00 0.00 37.04 3.18
3387 3464 9.130661 TCCATTTGAAATCTCTACAAAGACAAA 57.869 29.630 0.00 0.00 37.04 2.83
3489 3566 4.488770 ACAAAATCTGTGGGGGTTTATGT 58.511 39.130 0.00 0.00 36.69 2.29
3495 3572 4.980573 TCTGTGGGGGTTTATGTATATGC 58.019 43.478 0.00 0.00 0.00 3.14
3565 3643 5.413833 CAGATATGTGTTGAAGCCTCAAAGT 59.586 40.000 0.00 0.00 43.18 2.66
3600 3678 6.045318 AGTCAGAGTTGATGTGCACATATAC 58.955 40.000 31.45 27.78 36.57 1.47
3642 3720 1.238439 AGTTGTGATTGGCTTGACCG 58.762 50.000 0.00 0.00 43.94 4.79
3652 3730 0.168128 GGCTTGACCGCACATAACAC 59.832 55.000 0.00 0.00 0.00 3.32
3674 3752 1.359848 AGTTTGCACCGACGATGATC 58.640 50.000 0.00 0.00 0.00 2.92
3826 3993 5.698741 ATGATGGTATGTGAGAAAGGTGA 57.301 39.130 0.00 0.00 0.00 4.02
3828 3995 5.245531 TGATGGTATGTGAGAAAGGTGAAC 58.754 41.667 0.00 0.00 0.00 3.18
3857 4024 5.575957 CACAGATGCAGATTTGATGTTACC 58.424 41.667 0.00 0.00 0.00 2.85
3927 4094 9.656040 CAATTTTTGGTTTCAGATATTGATCCA 57.344 29.630 0.00 0.00 37.94 3.41
3937 4104 5.008911 TCAGATATTGATCCAATGGTTTGCG 59.991 40.000 0.00 0.00 35.54 4.85
3951 4118 6.613755 ATGGTTTGCGTTCTATTATGTACC 57.386 37.500 0.00 0.00 0.00 3.34
4005 4172 4.586841 GGAATACTGAGTGAGCCTACATCT 59.413 45.833 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.336235 ACCCAAATCAGACTAGGATTTTATTGA 58.664 33.333 0.00 0.00 41.66 2.57
2 3 8.408601 CACCCAAATCAGACTAGGATTTTATTG 58.591 37.037 0.00 0.00 41.66 1.90
4 5 7.062957 CCACCCAAATCAGACTAGGATTTTAT 58.937 38.462 0.00 0.00 41.66 1.40
5 6 6.011981 ACCACCCAAATCAGACTAGGATTTTA 60.012 38.462 0.00 0.00 41.66 1.52
6 7 5.222337 ACCACCCAAATCAGACTAGGATTTT 60.222 40.000 0.00 0.00 41.66 1.82
7 8 4.292306 ACCACCCAAATCAGACTAGGATTT 59.708 41.667 0.00 0.00 43.71 2.17
8 9 3.852578 ACCACCCAAATCAGACTAGGATT 59.147 43.478 0.00 0.00 36.57 3.01
9 10 3.456277 GACCACCCAAATCAGACTAGGAT 59.544 47.826 0.00 0.00 0.00 3.24
10 11 2.838202 GACCACCCAAATCAGACTAGGA 59.162 50.000 0.00 0.00 0.00 2.94
11 12 2.092914 GGACCACCCAAATCAGACTAGG 60.093 54.545 0.00 0.00 34.14 3.02
12 13 2.571653 TGGACCACCCAAATCAGACTAG 59.428 50.000 0.00 0.00 43.29 2.57
13 14 2.626785 TGGACCACCCAAATCAGACTA 58.373 47.619 0.00 0.00 43.29 2.59
14 15 1.444933 TGGACCACCCAAATCAGACT 58.555 50.000 0.00 0.00 43.29 3.24
159 160 9.344309 CAAACTTTGCAAAATTTGATCAACTTT 57.656 25.926 31.90 15.78 34.62 2.66
160 161 8.728833 TCAAACTTTGCAAAATTTGATCAACTT 58.271 25.926 33.20 6.42 36.42 2.66
161 162 8.177013 GTCAAACTTTGCAAAATTTGATCAACT 58.823 29.630 36.67 7.87 41.64 3.16
162 163 8.177013 AGTCAAACTTTGCAAAATTTGATCAAC 58.823 29.630 36.67 27.86 41.64 3.18
163 164 8.266392 AGTCAAACTTTGCAAAATTTGATCAA 57.734 26.923 36.67 20.96 41.64 2.57
164 165 7.846644 AGTCAAACTTTGCAAAATTTGATCA 57.153 28.000 36.67 21.25 41.64 2.92
192 193 6.330278 CCTTGAACCGAAAGTTTCTCTTTTT 58.670 36.000 13.56 0.00 45.15 1.94
193 194 5.678871 GCCTTGAACCGAAAGTTTCTCTTTT 60.679 40.000 13.56 1.58 45.15 2.27
195 196 3.315470 GCCTTGAACCGAAAGTTTCTCTT 59.685 43.478 13.56 4.47 39.40 2.85
196 197 2.879026 GCCTTGAACCGAAAGTTTCTCT 59.121 45.455 13.56 0.00 39.40 3.10
197 198 2.879026 AGCCTTGAACCGAAAGTTTCTC 59.121 45.455 13.56 5.38 39.40 2.87
198 199 2.932261 AGCCTTGAACCGAAAGTTTCT 58.068 42.857 13.56 0.00 39.40 2.52
199 200 5.048991 TGAATAGCCTTGAACCGAAAGTTTC 60.049 40.000 5.47 5.47 39.40 2.78
200 201 4.825085 TGAATAGCCTTGAACCGAAAGTTT 59.175 37.500 0.00 0.00 39.40 2.66
201 202 4.394729 TGAATAGCCTTGAACCGAAAGTT 58.605 39.130 0.00 0.00 43.07 2.66
202 203 4.003648 CTGAATAGCCTTGAACCGAAAGT 58.996 43.478 0.00 0.00 0.00 2.66
203 204 4.093556 GTCTGAATAGCCTTGAACCGAAAG 59.906 45.833 0.00 0.00 0.00 2.62
204 205 4.000988 GTCTGAATAGCCTTGAACCGAAA 58.999 43.478 0.00 0.00 0.00 3.46
205 206 3.007506 TGTCTGAATAGCCTTGAACCGAA 59.992 43.478 0.00 0.00 0.00 4.30
206 207 2.565391 TGTCTGAATAGCCTTGAACCGA 59.435 45.455 0.00 0.00 0.00 4.69
207 208 2.673368 GTGTCTGAATAGCCTTGAACCG 59.327 50.000 0.00 0.00 0.00 4.44
208 209 3.944087 AGTGTCTGAATAGCCTTGAACC 58.056 45.455 0.00 0.00 0.00 3.62
209 210 5.948992 AAAGTGTCTGAATAGCCTTGAAC 57.051 39.130 0.00 0.00 0.00 3.18
210 211 6.149474 GCTTAAAGTGTCTGAATAGCCTTGAA 59.851 38.462 0.00 0.00 0.00 2.69
211 212 5.643777 GCTTAAAGTGTCTGAATAGCCTTGA 59.356 40.000 0.00 0.00 0.00 3.02
212 213 5.412594 TGCTTAAAGTGTCTGAATAGCCTTG 59.587 40.000 0.00 0.00 0.00 3.61
213 214 5.560724 TGCTTAAAGTGTCTGAATAGCCTT 58.439 37.500 0.00 0.00 0.00 4.35
214 215 5.165961 TGCTTAAAGTGTCTGAATAGCCT 57.834 39.130 0.00 0.00 0.00 4.58
215 216 5.880054 TTGCTTAAAGTGTCTGAATAGCC 57.120 39.130 0.00 0.00 0.00 3.93
216 217 6.903419 ACTTTGCTTAAAGTGTCTGAATAGC 58.097 36.000 4.76 0.00 41.12 2.97
217 218 9.387123 GAAACTTTGCTTAAAGTGTCTGAATAG 57.613 33.333 13.28 0.00 41.56 1.73
218 219 8.349983 GGAAACTTTGCTTAAAGTGTCTGAATA 58.650 33.333 17.74 0.00 43.36 1.75
219 220 7.147915 TGGAAACTTTGCTTAAAGTGTCTGAAT 60.148 33.333 17.74 0.00 43.36 2.57
220 221 6.151985 TGGAAACTTTGCTTAAAGTGTCTGAA 59.848 34.615 17.74 6.41 43.36 3.02
221 222 5.650266 TGGAAACTTTGCTTAAAGTGTCTGA 59.350 36.000 17.74 6.98 43.36 3.27
222 223 5.743872 GTGGAAACTTTGCTTAAAGTGTCTG 59.256 40.000 17.74 0.00 43.36 3.51
223 224 5.652452 AGTGGAAACTTTGCTTAAAGTGTCT 59.348 36.000 17.74 3.67 43.36 3.41
224 225 5.891451 AGTGGAAACTTTGCTTAAAGTGTC 58.109 37.500 12.49 12.49 43.19 3.67
225 226 5.914898 AGTGGAAACTTTGCTTAAAGTGT 57.085 34.783 6.22 1.05 41.76 3.55
226 227 6.564328 AGAAGTGGAAACTTTGCTTAAAGTG 58.436 36.000 6.22 0.00 41.76 3.16
227 228 6.775594 AGAAGTGGAAACTTTGCTTAAAGT 57.224 33.333 0.00 0.00 44.25 2.66
228 229 6.414987 CGAAGAAGTGGAAACTTTGCTTAAAG 59.585 38.462 0.00 0.00 35.93 1.85
229 230 6.262601 CGAAGAAGTGGAAACTTTGCTTAAA 58.737 36.000 0.00 0.00 0.00 1.52
230 231 5.220970 CCGAAGAAGTGGAAACTTTGCTTAA 60.221 40.000 0.00 0.00 0.00 1.85
231 232 4.274950 CCGAAGAAGTGGAAACTTTGCTTA 59.725 41.667 0.00 0.00 0.00 3.09
232 233 3.066760 CCGAAGAAGTGGAAACTTTGCTT 59.933 43.478 0.00 0.00 0.00 3.91
233 234 2.618709 CCGAAGAAGTGGAAACTTTGCT 59.381 45.455 0.00 0.00 0.00 3.91
234 235 2.357952 ACCGAAGAAGTGGAAACTTTGC 59.642 45.455 0.00 0.00 0.00 3.68
235 236 4.632538 AACCGAAGAAGTGGAAACTTTG 57.367 40.909 0.00 0.00 0.00 2.77
236 237 5.654603 AAAACCGAAGAAGTGGAAACTTT 57.345 34.783 0.00 0.00 0.00 2.66
237 238 5.047590 ACAAAAACCGAAGAAGTGGAAACTT 60.048 36.000 0.00 0.00 0.00 2.66
238 239 4.461431 ACAAAAACCGAAGAAGTGGAAACT 59.539 37.500 0.00 0.00 0.00 2.66
239 240 4.740268 ACAAAAACCGAAGAAGTGGAAAC 58.260 39.130 0.00 0.00 0.00 2.78
240 241 5.394224 AACAAAAACCGAAGAAGTGGAAA 57.606 34.783 0.00 0.00 0.00 3.13
241 242 5.394224 AAACAAAAACCGAAGAAGTGGAA 57.606 34.783 0.00 0.00 0.00 3.53
242 243 5.184287 AGAAAACAAAAACCGAAGAAGTGGA 59.816 36.000 0.00 0.00 0.00 4.02
243 244 5.407502 AGAAAACAAAAACCGAAGAAGTGG 58.592 37.500 0.00 0.00 0.00 4.00
244 245 6.944557 AAGAAAACAAAAACCGAAGAAGTG 57.055 33.333 0.00 0.00 0.00 3.16
245 246 9.297586 GAATAAGAAAACAAAAACCGAAGAAGT 57.702 29.630 0.00 0.00 0.00 3.01
246 247 8.469125 CGAATAAGAAAACAAAAACCGAAGAAG 58.531 33.333 0.00 0.00 0.00 2.85
247 248 7.432838 CCGAATAAGAAAACAAAAACCGAAGAA 59.567 33.333 0.00 0.00 0.00 2.52
248 249 6.913673 CCGAATAAGAAAACAAAAACCGAAGA 59.086 34.615 0.00 0.00 0.00 2.87
249 250 6.143278 CCCGAATAAGAAAACAAAAACCGAAG 59.857 38.462 0.00 0.00 0.00 3.79
250 251 5.978322 CCCGAATAAGAAAACAAAAACCGAA 59.022 36.000 0.00 0.00 0.00 4.30
251 252 5.298777 TCCCGAATAAGAAAACAAAAACCGA 59.701 36.000 0.00 0.00 0.00 4.69
252 253 5.521544 TCCCGAATAAGAAAACAAAAACCG 58.478 37.500 0.00 0.00 0.00 4.44
253 254 7.375834 AGATCCCGAATAAGAAAACAAAAACC 58.624 34.615 0.00 0.00 0.00 3.27
254 255 8.699749 CAAGATCCCGAATAAGAAAACAAAAAC 58.300 33.333 0.00 0.00 0.00 2.43
255 256 8.417884 ACAAGATCCCGAATAAGAAAACAAAAA 58.582 29.630 0.00 0.00 0.00 1.94
256 257 7.947282 ACAAGATCCCGAATAAGAAAACAAAA 58.053 30.769 0.00 0.00 0.00 2.44
257 258 7.519032 ACAAGATCCCGAATAAGAAAACAAA 57.481 32.000 0.00 0.00 0.00 2.83
258 259 7.519032 AACAAGATCCCGAATAAGAAAACAA 57.481 32.000 0.00 0.00 0.00 2.83
259 260 7.519032 AAACAAGATCCCGAATAAGAAAACA 57.481 32.000 0.00 0.00 0.00 2.83
260 261 8.812147 AAAAACAAGATCCCGAATAAGAAAAC 57.188 30.769 0.00 0.00 0.00 2.43
264 265 8.682710 CCATTAAAAACAAGATCCCGAATAAGA 58.317 33.333 0.00 0.00 0.00 2.10
265 266 8.466798 ACCATTAAAAACAAGATCCCGAATAAG 58.533 33.333 0.00 0.00 0.00 1.73
266 267 8.356000 ACCATTAAAAACAAGATCCCGAATAA 57.644 30.769 0.00 0.00 0.00 1.40
267 268 7.948034 ACCATTAAAAACAAGATCCCGAATA 57.052 32.000 0.00 0.00 0.00 1.75
268 269 6.850752 ACCATTAAAAACAAGATCCCGAAT 57.149 33.333 0.00 0.00 0.00 3.34
269 270 6.658188 AACCATTAAAAACAAGATCCCGAA 57.342 33.333 0.00 0.00 0.00 4.30
270 271 6.658188 AAACCATTAAAAACAAGATCCCGA 57.342 33.333 0.00 0.00 0.00 5.14
271 272 7.722795 AAAAACCATTAAAAACAAGATCCCG 57.277 32.000 0.00 0.00 0.00 5.14
283 284 8.973378 CGAGTTGCAAAGATAAAAACCATTAAA 58.027 29.630 0.00 0.00 0.00 1.52
284 285 7.115663 GCGAGTTGCAAAGATAAAAACCATTAA 59.884 33.333 0.00 0.00 45.45 1.40
285 286 6.584563 GCGAGTTGCAAAGATAAAAACCATTA 59.415 34.615 0.00 0.00 45.45 1.90
286 287 5.405269 GCGAGTTGCAAAGATAAAAACCATT 59.595 36.000 0.00 0.00 45.45 3.16
287 288 4.923281 GCGAGTTGCAAAGATAAAAACCAT 59.077 37.500 0.00 0.00 45.45 3.55
288 289 4.295051 GCGAGTTGCAAAGATAAAAACCA 58.705 39.130 0.00 0.00 45.45 3.67
289 290 3.360758 CGCGAGTTGCAAAGATAAAAACC 59.639 43.478 0.00 0.00 46.97 3.27
290 291 4.215965 TCGCGAGTTGCAAAGATAAAAAC 58.784 39.130 3.71 0.00 46.97 2.43
291 292 4.475763 TCGCGAGTTGCAAAGATAAAAA 57.524 36.364 3.71 0.00 46.97 1.94
292 293 4.678509 ATCGCGAGTTGCAAAGATAAAA 57.321 36.364 16.66 0.00 46.97 1.52
293 294 4.678509 AATCGCGAGTTGCAAAGATAAA 57.321 36.364 16.66 0.00 46.97 1.40
294 295 4.678509 AAATCGCGAGTTGCAAAGATAA 57.321 36.364 22.19 0.00 46.97 1.75
295 296 4.647964 GAAAATCGCGAGTTGCAAAGATA 58.352 39.130 23.54 0.00 46.97 1.98
296 297 3.492313 GAAAATCGCGAGTTGCAAAGAT 58.508 40.909 23.54 4.68 46.97 2.40
297 298 2.661709 CGAAAATCGCGAGTTGCAAAGA 60.662 45.455 25.39 0.00 46.97 2.52
298 299 1.638996 CGAAAATCGCGAGTTGCAAAG 59.361 47.619 25.39 7.14 46.97 2.77
299 300 1.669184 CGAAAATCGCGAGTTGCAAA 58.331 45.000 25.39 0.00 46.97 3.68
300 301 3.359798 CGAAAATCGCGAGTTGCAA 57.640 47.368 25.39 0.00 46.97 4.08
310 311 4.921470 TTTAGTTCTCTGGCGAAAATCG 57.079 40.909 0.00 0.00 43.89 3.34
311 312 5.354234 TGGATTTAGTTCTCTGGCGAAAATC 59.646 40.000 0.00 0.00 0.00 2.17
312 313 5.253330 TGGATTTAGTTCTCTGGCGAAAAT 58.747 37.500 0.00 0.00 0.00 1.82
313 314 4.647611 TGGATTTAGTTCTCTGGCGAAAA 58.352 39.130 0.00 0.00 0.00 2.29
314 315 4.280436 TGGATTTAGTTCTCTGGCGAAA 57.720 40.909 0.00 0.00 0.00 3.46
315 316 3.973206 TGGATTTAGTTCTCTGGCGAA 57.027 42.857 0.00 0.00 0.00 4.70
316 317 3.260884 ACTTGGATTTAGTTCTCTGGCGA 59.739 43.478 0.00 0.00 0.00 5.54
317 318 3.600388 ACTTGGATTTAGTTCTCTGGCG 58.400 45.455 0.00 0.00 0.00 5.69
318 319 5.003804 TCAACTTGGATTTAGTTCTCTGGC 58.996 41.667 0.00 0.00 33.73 4.85
319 320 5.120830 CGTCAACTTGGATTTAGTTCTCTGG 59.879 44.000 0.00 0.00 33.73 3.86
320 321 5.926542 TCGTCAACTTGGATTTAGTTCTCTG 59.073 40.000 0.00 0.00 33.73 3.35
321 322 6.097915 TCGTCAACTTGGATTTAGTTCTCT 57.902 37.500 0.00 0.00 33.73 3.10
322 323 6.645415 TCTTCGTCAACTTGGATTTAGTTCTC 59.355 38.462 0.00 0.00 33.73 2.87
323 324 6.522054 TCTTCGTCAACTTGGATTTAGTTCT 58.478 36.000 0.00 0.00 33.73 3.01
324 325 6.780706 TCTTCGTCAACTTGGATTTAGTTC 57.219 37.500 0.00 0.00 33.73 3.01
325 326 6.934645 TGATCTTCGTCAACTTGGATTTAGTT 59.065 34.615 0.00 0.00 36.31 2.24
326 327 6.464222 TGATCTTCGTCAACTTGGATTTAGT 58.536 36.000 0.00 0.00 0.00 2.24
327 328 6.968131 TGATCTTCGTCAACTTGGATTTAG 57.032 37.500 0.00 0.00 0.00 1.85
328 329 7.102993 TCATGATCTTCGTCAACTTGGATTTA 58.897 34.615 0.00 0.00 0.00 1.40
329 330 5.939883 TCATGATCTTCGTCAACTTGGATTT 59.060 36.000 0.00 0.00 0.00 2.17
330 331 5.491070 TCATGATCTTCGTCAACTTGGATT 58.509 37.500 0.00 0.00 0.00 3.01
331 332 5.089970 TCATGATCTTCGTCAACTTGGAT 57.910 39.130 0.00 0.00 0.00 3.41
332 333 4.535526 TCATGATCTTCGTCAACTTGGA 57.464 40.909 0.00 0.00 0.00 3.53
333 334 5.808042 AATCATGATCTTCGTCAACTTGG 57.192 39.130 9.06 0.00 0.00 3.61
334 335 6.025896 CCAAATCATGATCTTCGTCAACTTG 58.974 40.000 9.06 5.64 0.00 3.16
335 336 5.124457 CCCAAATCATGATCTTCGTCAACTT 59.876 40.000 9.06 0.00 0.00 2.66
336 337 4.637534 CCCAAATCATGATCTTCGTCAACT 59.362 41.667 9.06 0.00 0.00 3.16
337 338 4.731773 GCCCAAATCATGATCTTCGTCAAC 60.732 45.833 9.06 0.00 0.00 3.18
338 339 3.378112 GCCCAAATCATGATCTTCGTCAA 59.622 43.478 9.06 0.00 0.00 3.18
339 340 2.945008 GCCCAAATCATGATCTTCGTCA 59.055 45.455 9.06 0.00 0.00 4.35
340 341 3.003068 CAGCCCAAATCATGATCTTCGTC 59.997 47.826 9.06 0.00 0.00 4.20
341 342 2.947652 CAGCCCAAATCATGATCTTCGT 59.052 45.455 9.06 0.00 0.00 3.85
342 343 2.292569 CCAGCCCAAATCATGATCTTCG 59.707 50.000 9.06 0.00 0.00 3.79
343 344 2.035576 GCCAGCCCAAATCATGATCTTC 59.964 50.000 9.06 0.00 0.00 2.87
344 345 2.037144 GCCAGCCCAAATCATGATCTT 58.963 47.619 9.06 3.18 0.00 2.40
345 346 1.063492 TGCCAGCCCAAATCATGATCT 60.063 47.619 9.06 0.00 0.00 2.75
346 347 1.068127 GTGCCAGCCCAAATCATGATC 59.932 52.381 9.06 0.00 0.00 2.92
347 348 1.117150 GTGCCAGCCCAAATCATGAT 58.883 50.000 1.18 1.18 0.00 2.45
348 349 1.314534 CGTGCCAGCCCAAATCATGA 61.315 55.000 0.00 0.00 0.00 3.07
349 350 1.140161 CGTGCCAGCCCAAATCATG 59.860 57.895 0.00 0.00 0.00 3.07
350 351 2.053865 CCGTGCCAGCCCAAATCAT 61.054 57.895 0.00 0.00 0.00 2.45
351 352 2.130821 TACCGTGCCAGCCCAAATCA 62.131 55.000 0.00 0.00 0.00 2.57
352 353 0.751643 ATACCGTGCCAGCCCAAATC 60.752 55.000 0.00 0.00 0.00 2.17
353 354 0.324275 AATACCGTGCCAGCCCAAAT 60.324 50.000 0.00 0.00 0.00 2.32
354 355 1.075836 AATACCGTGCCAGCCCAAA 59.924 52.632 0.00 0.00 0.00 3.28
355 356 1.677300 CAATACCGTGCCAGCCCAA 60.677 57.895 0.00 0.00 0.00 4.12
356 357 2.045438 CAATACCGTGCCAGCCCA 60.045 61.111 0.00 0.00 0.00 5.36
357 358 2.828549 CCAATACCGTGCCAGCCC 60.829 66.667 0.00 0.00 0.00 5.19
358 359 2.828549 CCCAATACCGTGCCAGCC 60.829 66.667 0.00 0.00 0.00 4.85
359 360 2.112815 GTCCCAATACCGTGCCAGC 61.113 63.158 0.00 0.00 0.00 4.85
360 361 1.451387 GGTCCCAATACCGTGCCAG 60.451 63.158 0.00 0.00 0.00 4.85
361 362 1.921346 AGGTCCCAATACCGTGCCA 60.921 57.895 0.00 0.00 44.77 4.92
362 363 1.451387 CAGGTCCCAATACCGTGCC 60.451 63.158 0.00 0.00 44.77 5.01
363 364 0.743345 GTCAGGTCCCAATACCGTGC 60.743 60.000 0.00 0.00 44.77 5.34
364 365 0.611200 TGTCAGGTCCCAATACCGTG 59.389 55.000 0.00 0.00 44.77 4.94
365 366 1.209504 CATGTCAGGTCCCAATACCGT 59.790 52.381 0.00 0.00 44.77 4.83
366 367 1.953559 CATGTCAGGTCCCAATACCG 58.046 55.000 0.00 0.00 44.77 4.02
367 368 1.212935 AGCATGTCAGGTCCCAATACC 59.787 52.381 0.00 0.00 40.06 2.73
368 369 2.092968 TCAGCATGTCAGGTCCCAATAC 60.093 50.000 0.00 0.00 37.40 1.89
369 370 2.195727 TCAGCATGTCAGGTCCCAATA 58.804 47.619 0.00 0.00 37.40 1.90
370 371 0.994247 TCAGCATGTCAGGTCCCAAT 59.006 50.000 0.00 0.00 37.40 3.16
371 372 0.770499 TTCAGCATGTCAGGTCCCAA 59.230 50.000 0.00 0.00 37.40 4.12
372 373 0.036732 GTTCAGCATGTCAGGTCCCA 59.963 55.000 0.00 0.00 37.40 4.37
373 374 0.326264 AGTTCAGCATGTCAGGTCCC 59.674 55.000 0.00 0.00 37.40 4.46
374 375 2.079925 GAAGTTCAGCATGTCAGGTCC 58.920 52.381 0.00 0.00 37.40 4.46
375 376 2.079925 GGAAGTTCAGCATGTCAGGTC 58.920 52.381 5.01 0.00 37.40 3.85
376 377 1.421268 TGGAAGTTCAGCATGTCAGGT 59.579 47.619 5.01 0.00 37.40 4.00
377 378 2.189594 TGGAAGTTCAGCATGTCAGG 57.810 50.000 5.01 0.00 37.40 3.86
378 379 4.037208 ACTTTTGGAAGTTCAGCATGTCAG 59.963 41.667 5.01 0.00 43.48 3.51
379 380 3.953612 ACTTTTGGAAGTTCAGCATGTCA 59.046 39.130 5.01 0.00 43.48 3.58
380 381 4.574599 ACTTTTGGAAGTTCAGCATGTC 57.425 40.909 5.01 0.00 43.48 3.06
414 415 8.964150 CGTCTTTTAAGGAATCAATTCGTTTTT 58.036 29.630 13.90 2.38 42.66 1.94
415 416 7.593644 CCGTCTTTTAAGGAATCAATTCGTTTT 59.406 33.333 13.90 4.32 42.66 2.43
416 417 7.081976 CCGTCTTTTAAGGAATCAATTCGTTT 58.918 34.615 13.90 6.28 42.66 3.60
417 418 6.349033 CCCGTCTTTTAAGGAATCAATTCGTT 60.349 38.462 13.37 13.37 44.26 3.85
418 419 5.123344 CCCGTCTTTTAAGGAATCAATTCGT 59.877 40.000 0.00 0.00 37.67 3.85
419 420 5.353123 TCCCGTCTTTTAAGGAATCAATTCG 59.647 40.000 0.00 0.00 37.67 3.34
420 421 6.753107 TCCCGTCTTTTAAGGAATCAATTC 57.247 37.500 0.00 0.00 36.08 2.17
421 422 7.396055 TCAATCCCGTCTTTTAAGGAATCAATT 59.604 33.333 0.00 0.00 30.71 2.32
422 423 6.889722 TCAATCCCGTCTTTTAAGGAATCAAT 59.110 34.615 0.00 0.00 30.71 2.57
423 424 6.150474 GTCAATCCCGTCTTTTAAGGAATCAA 59.850 38.462 0.00 0.00 30.71 2.57
424 425 5.646360 GTCAATCCCGTCTTTTAAGGAATCA 59.354 40.000 0.00 0.00 30.71 2.57
425 426 5.880887 AGTCAATCCCGTCTTTTAAGGAATC 59.119 40.000 0.00 0.00 30.71 2.52
426 427 5.816682 AGTCAATCCCGTCTTTTAAGGAAT 58.183 37.500 0.00 0.00 30.71 3.01
427 428 5.237236 AGTCAATCCCGTCTTTTAAGGAA 57.763 39.130 0.00 0.00 30.71 3.36
428 429 4.903045 AGTCAATCCCGTCTTTTAAGGA 57.097 40.909 0.00 0.00 0.00 3.36
429 430 5.731591 ACTAGTCAATCCCGTCTTTTAAGG 58.268 41.667 0.00 0.00 0.00 2.69
430 431 8.767478 TTTACTAGTCAATCCCGTCTTTTAAG 57.233 34.615 0.00 0.00 0.00 1.85
433 434 8.755977 TCTATTTACTAGTCAATCCCGTCTTTT 58.244 33.333 5.56 0.00 0.00 2.27
434 435 8.302515 TCTATTTACTAGTCAATCCCGTCTTT 57.697 34.615 5.56 0.00 0.00 2.52
435 436 7.893124 TCTATTTACTAGTCAATCCCGTCTT 57.107 36.000 5.56 0.00 0.00 3.01
436 437 7.893124 TTCTATTTACTAGTCAATCCCGTCT 57.107 36.000 5.56 0.00 0.00 4.18
437 438 8.937634 TTTTCTATTTACTAGTCAATCCCGTC 57.062 34.615 5.56 0.00 0.00 4.79
438 439 9.901172 AATTTTCTATTTACTAGTCAATCCCGT 57.099 29.630 5.56 0.00 0.00 5.28
457 458 9.533831 ACAAGGGTGAAATATCAGTAATTTTCT 57.466 29.630 0.00 0.00 35.88 2.52
475 476 2.224621 ACCTGACAATCTCACAAGGGTG 60.225 50.000 0.00 0.00 46.66 4.61
476 477 2.057922 ACCTGACAATCTCACAAGGGT 58.942 47.619 0.00 0.00 0.00 4.34
477 478 2.867109 ACCTGACAATCTCACAAGGG 57.133 50.000 0.00 0.00 0.00 3.95
478 479 3.885297 ACAAACCTGACAATCTCACAAGG 59.115 43.478 0.00 0.00 0.00 3.61
479 480 5.049405 GGTACAAACCTGACAATCTCACAAG 60.049 44.000 0.00 0.00 43.08 3.16
480 481 4.819630 GGTACAAACCTGACAATCTCACAA 59.180 41.667 0.00 0.00 43.08 3.33
481 482 4.141597 TGGTACAAACCTGACAATCTCACA 60.142 41.667 0.00 0.00 46.91 3.58
482 483 4.385825 TGGTACAAACCTGACAATCTCAC 58.614 43.478 0.00 0.00 46.91 3.51
483 484 4.698201 TGGTACAAACCTGACAATCTCA 57.302 40.909 0.00 0.00 46.91 3.27
528 529 7.775561 AGGAAGTCACTCTGTTTTATTTCAGTT 59.224 33.333 0.00 0.00 33.89 3.16
532 533 7.604545 AGCTAGGAAGTCACTCTGTTTTATTTC 59.395 37.037 0.00 0.00 0.00 2.17
536 537 6.420913 AAGCTAGGAAGTCACTCTGTTTTA 57.579 37.500 0.00 0.00 0.00 1.52
537 538 4.965200 AGCTAGGAAGTCACTCTGTTTT 57.035 40.909 0.00 0.00 0.00 2.43
551 552 3.773119 CACCAACCCTAAGTAAGCTAGGA 59.227 47.826 0.72 0.00 32.87 2.94
560 561 1.350019 GCAGGTACACCAACCCTAAGT 59.650 52.381 0.38 0.00 40.71 2.24
639 640 2.508526 AGATTTCTGTTGTGGAGCACC 58.491 47.619 0.00 0.00 32.73 5.01
678 679 4.743644 GCTAAGCGAACAATAGTACGGAAT 59.256 41.667 0.00 0.00 0.00 3.01
679 680 4.107622 GCTAAGCGAACAATAGTACGGAA 58.892 43.478 0.00 0.00 0.00 4.30
752 753 0.745845 CAGGGTGGAGCGGAAAGATG 60.746 60.000 0.00 0.00 0.00 2.90
916 917 2.215942 ATTTACCCCACTGTGAAGCC 57.784 50.000 9.86 0.00 0.00 4.35
929 930 8.789762 TGCTAACTTAAAGAAGTGGAATTTACC 58.210 33.333 0.00 0.00 45.50 2.85
1370 1424 0.179073 CGGCCGTGAGATCTGGATTT 60.179 55.000 19.50 0.00 0.00 2.17
1496 1550 2.159114 CCGGGCAACAAATAATTCCCAG 60.159 50.000 0.00 0.00 39.74 4.45
1568 1622 1.150536 TTGGGCGGCAAGAACTTCT 59.849 52.632 12.47 0.00 0.00 2.85
1967 2036 0.962356 CTTTGGGGTCGAATGCTGCT 60.962 55.000 0.00 0.00 0.00 4.24
2588 2657 2.092267 CCATGGATGAACACATCTGGGA 60.092 50.000 5.56 0.00 39.93 4.37
2679 2748 1.186917 CCAGCAGGTCAAATTGGGCA 61.187 55.000 0.00 0.00 0.00 5.36
2745 2814 1.982395 AGACCGCCCGAAGATGTCA 60.982 57.895 0.00 0.00 0.00 3.58
2858 2927 1.134367 CTGGATTCAATGGCAGCTGTG 59.866 52.381 16.64 5.59 0.00 3.66
2859 2928 1.005097 TCTGGATTCAATGGCAGCTGT 59.995 47.619 16.64 0.00 0.00 4.40
2943 3012 2.434884 AGCAACCACCGCTGATCG 60.435 61.111 0.00 0.00 38.60 3.69
3151 3227 7.805071 GCATAATCAAATGACTACTTGGCATAC 59.195 37.037 0.00 0.00 45.29 2.39
3236 3313 1.276421 CGGAGGGAGTATATGCCAAGG 59.724 57.143 0.00 0.00 43.31 3.61
3267 3344 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
3273 3350 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3274 3351 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3277 3354 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3279 3356 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3280 3357 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3282 3359 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3283 3360 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3285 3362 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3286 3363 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3288 3365 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3290 3367 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3293 3370 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3294 3371 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3295 3372 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3297 3374 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3299 3376 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3300 3377 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3301 3378 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3302 3379 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3303 3380 4.872691 AGTAGATTCACTCATTTTGCTCCG 59.127 41.667 0.00 0.00 0.00 4.63
3304 3381 6.112058 AGAGTAGATTCACTCATTTTGCTCC 58.888 40.000 14.52 0.00 46.15 4.70
3342 3419 9.208022 CAAATGGACTATCACATACGAATGTAT 57.792 33.333 0.00 0.00 44.70 2.29
3343 3420 8.417884 TCAAATGGACTATCACATACGAATGTA 58.582 33.333 0.00 0.00 44.70 2.29
3345 3422 7.713764 TCAAATGGACTATCACATACGAATG 57.286 36.000 0.00 0.00 39.17 2.67
3347 3424 8.731275 ATTTCAAATGGACTATCACATACGAA 57.269 30.769 0.00 0.00 0.00 3.85
3348 3425 8.204160 AGATTTCAAATGGACTATCACATACGA 58.796 33.333 0.00 0.00 0.00 3.43
3349 3426 8.370493 AGATTTCAAATGGACTATCACATACG 57.630 34.615 0.00 0.00 0.00 3.06
3350 3427 9.553064 AGAGATTTCAAATGGACTATCACATAC 57.447 33.333 0.00 0.00 0.00 2.39
3352 3429 9.553064 GTAGAGATTTCAAATGGACTATCACAT 57.447 33.333 0.00 0.00 0.00 3.21
3354 3431 8.948631 TGTAGAGATTTCAAATGGACTATCAC 57.051 34.615 0.00 0.00 0.00 3.06
3358 3435 9.436957 GTCTTTGTAGAGATTTCAAATGGACTA 57.563 33.333 0.00 0.00 30.68 2.59
3359 3436 7.939039 TGTCTTTGTAGAGATTTCAAATGGACT 59.061 33.333 0.00 0.00 32.57 3.85
3360 3437 8.099364 TGTCTTTGTAGAGATTTCAAATGGAC 57.901 34.615 0.00 0.00 32.28 4.02
3362 3439 9.918630 ATTTGTCTTTGTAGAGATTTCAAATGG 57.081 29.630 0.00 0.00 33.94 3.16
3377 3454 8.971073 CCTCCATTCCTAAATATTTGTCTTTGT 58.029 33.333 11.05 0.00 0.00 2.83
3378 3455 8.416329 CCCTCCATTCCTAAATATTTGTCTTTG 58.584 37.037 11.05 3.70 0.00 2.77
3379 3456 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
3380 3457 7.882755 TCCCTCCATTCCTAAATATTTGTCTT 58.117 34.615 11.05 0.00 0.00 3.01
3381 3458 7.129504 ACTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
3382 3459 7.290813 ACTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
3383 3460 7.226059 ACTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
3478 3555 4.202524 TGACTGGCATATACATAAACCCCC 60.203 45.833 0.00 0.00 0.00 5.40
3489 3566 5.186603 TGCCAAACAATTTGACTGGCATATA 59.813 36.000 29.04 16.41 45.98 0.86
3495 3572 3.457610 AGTGCCAAACAATTTGACTGG 57.542 42.857 2.79 9.76 43.26 4.00
3589 3667 8.657074 TCATACAAGTAAAGGTATATGTGCAC 57.343 34.615 10.75 10.75 0.00 4.57
3642 3720 2.719046 GTGCAAACTTCGTGTTATGTGC 59.281 45.455 0.00 10.12 39.23 4.57
3652 3730 0.179250 CATCGTCGGTGCAAACTTCG 60.179 55.000 0.00 0.00 0.00 3.79
3674 3752 1.558756 AGGTGCCCATCTTTCTCAGAG 59.441 52.381 0.00 0.00 33.87 3.35
3733 3811 9.476202 AAAATCCAGCAAAAACAGTTATAAGAC 57.524 29.630 0.00 0.00 0.00 3.01
3763 3841 6.560253 AGCTTGCCCAAAGTTATAATATCG 57.440 37.500 0.00 0.00 38.25 2.92
3764 3842 6.348540 CCGAGCTTGCCCAAAGTTATAATATC 60.349 42.308 0.00 0.00 38.25 1.63
3765 3843 5.473504 CCGAGCTTGCCCAAAGTTATAATAT 59.526 40.000 0.00 0.00 38.25 1.28
3766 3844 4.819630 CCGAGCTTGCCCAAAGTTATAATA 59.180 41.667 0.00 0.00 38.25 0.98
3767 3845 3.632145 CCGAGCTTGCCCAAAGTTATAAT 59.368 43.478 0.00 0.00 38.25 1.28
3848 4015 3.586470 AACACAACTGGGGTAACATCA 57.414 42.857 0.00 0.00 39.74 3.07
3857 4024 4.156008 GCCTAGAAATGTAACACAACTGGG 59.844 45.833 0.00 0.00 34.46 4.45
3923 4090 6.321181 ACATAATAGAACGCAAACCATTGGAT 59.679 34.615 10.37 0.00 37.02 3.41
3927 4094 6.826741 AGGTACATAATAGAACGCAAACCATT 59.173 34.615 0.00 0.00 0.00 3.16
3951 4118 3.420893 TGGTTTTCTCTGGCCATGTAAG 58.579 45.455 5.51 1.66 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.