Multiple sequence alignment - TraesCS4B01G140500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G140500 chr4B 100.000 2911 0 0 1 2911 184863723 184866633 0.000000e+00 5376.0
1 TraesCS4B01G140500 chr4B 96.794 811 22 2 2104 2910 184874095 184874905 0.000000e+00 1351.0
2 TraesCS4B01G140500 chr4B 95.062 810 36 2 2104 2909 83037231 83038040 0.000000e+00 1271.0
3 TraesCS4B01G140500 chr4A 95.095 2059 74 14 1 2047 449118916 449116873 0.000000e+00 3217.0
4 TraesCS4B01G140500 chr4A 87.879 66 6 2 2039 2103 45869585 45869649 3.110000e-10 76.8
5 TraesCS4B01G140500 chr4D 93.945 1123 41 10 2 1113 121969626 121970732 0.000000e+00 1672.0
6 TraesCS4B01G140500 chr4D 97.896 903 19 0 1145 2047 121970735 121971637 0.000000e+00 1563.0
7 TraesCS4B01G140500 chr4D 97.143 35 1 0 1538 1572 386831469 386831503 3.130000e-05 60.2
8 TraesCS4B01G140500 chr7B 95.421 808 31 4 2107 2910 523744685 523743880 0.000000e+00 1282.0
9 TraesCS4B01G140500 chr7B 95.303 809 31 5 2107 2910 547295480 547294674 0.000000e+00 1277.0
10 TraesCS4B01G140500 chr7B 95.197 812 31 4 2104 2910 628435245 628436053 0.000000e+00 1277.0
11 TraesCS4B01G140500 chr7B 95.179 809 34 3 2107 2910 258292076 258291268 0.000000e+00 1273.0
12 TraesCS4B01G140500 chr7B 78.846 208 32 12 1372 1573 590500936 590500735 2.350000e-26 130.0
13 TraesCS4B01G140500 chr5B 95.074 812 34 4 2104 2910 561730718 561731528 0.000000e+00 1273.0
14 TraesCS4B01G140500 chr3B 95.173 808 34 3 2107 2910 376743520 376744326 0.000000e+00 1271.0
15 TraesCS4B01G140500 chr2B 95.173 808 34 4 2107 2910 656933638 656932832 0.000000e+00 1271.0
16 TraesCS4B01G140500 chr7D 78.155 206 37 8 1372 1573 547458011 547457810 1.100000e-24 124.0
17 TraesCS4B01G140500 chr7A 77.376 221 30 17 1363 1573 631365248 631365458 2.370000e-21 113.0
18 TraesCS4B01G140500 chr1D 93.939 66 3 1 2039 2103 69498834 69498899 6.640000e-17 99.0
19 TraesCS4B01G140500 chr3D 93.333 60 3 1 2045 2103 341473612 341473553 1.440000e-13 87.9
20 TraesCS4B01G140500 chr6D 91.379 58 4 1 2047 2103 311386826 311386769 8.650000e-11 78.7
21 TraesCS4B01G140500 chr6B 91.379 58 4 1 2047 2103 515109302 515109359 8.650000e-11 78.7
22 TraesCS4B01G140500 chr2D 70.659 501 112 23 1363 1847 642991760 642992241 8.650000e-11 78.7
23 TraesCS4B01G140500 chrUn 70.751 506 103 32 1363 1847 31602391 31602872 4.020000e-09 73.1
24 TraesCS4B01G140500 chr5D 72.189 338 57 29 1534 1845 520910292 520910618 5.210000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G140500 chr4B 184863723 184866633 2910 False 5376.0 5376 100.0000 1 2911 1 chr4B.!!$F2 2910
1 TraesCS4B01G140500 chr4B 184874095 184874905 810 False 1351.0 1351 96.7940 2104 2910 1 chr4B.!!$F3 806
2 TraesCS4B01G140500 chr4B 83037231 83038040 809 False 1271.0 1271 95.0620 2104 2909 1 chr4B.!!$F1 805
3 TraesCS4B01G140500 chr4A 449116873 449118916 2043 True 3217.0 3217 95.0950 1 2047 1 chr4A.!!$R1 2046
4 TraesCS4B01G140500 chr4D 121969626 121971637 2011 False 1617.5 1672 95.9205 2 2047 2 chr4D.!!$F2 2045
5 TraesCS4B01G140500 chr7B 523743880 523744685 805 True 1282.0 1282 95.4210 2107 2910 1 chr7B.!!$R2 803
6 TraesCS4B01G140500 chr7B 547294674 547295480 806 True 1277.0 1277 95.3030 2107 2910 1 chr7B.!!$R3 803
7 TraesCS4B01G140500 chr7B 628435245 628436053 808 False 1277.0 1277 95.1970 2104 2910 1 chr7B.!!$F1 806
8 TraesCS4B01G140500 chr7B 258291268 258292076 808 True 1273.0 1273 95.1790 2107 2910 1 chr7B.!!$R1 803
9 TraesCS4B01G140500 chr5B 561730718 561731528 810 False 1273.0 1273 95.0740 2104 2910 1 chr5B.!!$F1 806
10 TraesCS4B01G140500 chr3B 376743520 376744326 806 False 1271.0 1271 95.1730 2107 2910 1 chr3B.!!$F1 803
11 TraesCS4B01G140500 chr2B 656932832 656933638 806 True 1271.0 1271 95.1730 2107 2910 1 chr2B.!!$R1 803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 188 0.108424 AGCAACAGTGAGATCGGCTC 60.108 55.0 0.0 0.0 44.21 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 2107 0.033601 ACCACAACAGCCACCAAAGA 60.034 50.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 5.063880 ACAATTGGTCTGGTAGAACTGAAC 58.936 41.667 10.83 0.00 31.84 3.18
89 91 2.632996 TCTGGTAGAACTGAACTGGGTG 59.367 50.000 0.00 0.00 0.00 4.61
170 172 3.245016 ACAAAAGGGACTCATCATCAGCA 60.245 43.478 0.00 0.00 38.49 4.41
183 185 1.931841 CATCAGCAACAGTGAGATCGG 59.068 52.381 0.00 0.00 0.00 4.18
186 188 0.108424 AGCAACAGTGAGATCGGCTC 60.108 55.000 0.00 0.00 44.21 4.70
371 373 1.620822 ACCGCTGGCTCATTCTTTTT 58.379 45.000 0.00 0.00 0.00 1.94
858 880 4.153117 CAGGAACAAAGCAGCAGTACTTAG 59.847 45.833 0.00 0.00 0.00 2.18
864 886 6.289064 ACAAAGCAGCAGTACTTAGTAAGTT 58.711 36.000 20.28 1.06 42.81 2.66
941 968 5.388408 ACTACTTAAGAGAAAGACCACCG 57.612 43.478 10.09 0.00 0.00 4.94
1086 1113 3.995048 CTCGTAAGCATGCATCATCATCT 59.005 43.478 21.98 0.00 37.18 2.90
1087 1114 5.138125 TCGTAAGCATGCATCATCATCTA 57.862 39.130 21.98 0.00 37.18 1.98
1088 1115 4.925646 TCGTAAGCATGCATCATCATCTAC 59.074 41.667 21.98 0.00 37.18 2.59
1089 1116 4.687483 CGTAAGCATGCATCATCATCTACA 59.313 41.667 21.98 0.00 0.00 2.74
1090 1117 5.163982 CGTAAGCATGCATCATCATCTACAG 60.164 44.000 21.98 0.00 0.00 2.74
1166 1193 1.476891 AGCAGAGTATGTACACGGTGG 59.523 52.381 13.48 0.00 0.00 4.61
1196 1223 2.096819 CCGTACGCCTAATGCATTTGTT 59.903 45.455 18.75 4.86 41.33 2.83
1250 1277 4.321974 GGTCGCATACATCTCATCATGGTA 60.322 45.833 0.00 0.00 0.00 3.25
1751 1778 2.687200 TACTGCTGCACCGGGGAT 60.687 61.111 8.67 0.00 0.00 3.85
1972 1999 3.181497 CCAAAACCTGAGTGAACTGTGTG 60.181 47.826 0.00 0.00 0.00 3.82
1982 2009 1.271325 TGAACTGTGTGGCTACATGGG 60.271 52.381 6.06 2.45 39.39 4.00
1984 2011 1.750399 CTGTGTGGCTACATGGGGC 60.750 63.158 6.06 2.43 39.39 5.80
2012 2039 2.062636 ACAGTATGAGGGTGTTTGGGT 58.937 47.619 0.00 0.00 39.69 4.51
2047 2074 7.598869 TGGCTTATGATATAAATGAGACACGTC 59.401 37.037 0.00 0.00 0.00 4.34
2048 2075 7.201359 GGCTTATGATATAAATGAGACACGTCG 60.201 40.741 0.00 0.00 34.09 5.12
2049 2076 7.537649 GCTTATGATATAAATGAGACACGTCGA 59.462 37.037 0.00 0.00 34.09 4.20
2050 2077 8.950403 TTATGATATAAATGAGACACGTCGAG 57.050 34.615 0.00 0.00 34.09 4.04
2051 2078 5.212934 TGATATAAATGAGACACGTCGAGC 58.787 41.667 0.00 0.00 34.09 5.03
2052 2079 3.784701 ATAAATGAGACACGTCGAGCT 57.215 42.857 0.00 0.00 34.09 4.09
2053 2080 1.983972 AAATGAGACACGTCGAGCTC 58.016 50.000 2.73 2.73 34.09 4.09
2054 2081 0.179187 AATGAGACACGTCGAGCTCG 60.179 55.000 30.03 30.03 41.45 5.03
2055 2082 1.983196 ATGAGACACGTCGAGCTCGG 61.983 60.000 33.98 21.94 40.29 4.63
2056 2083 3.384014 GAGACACGTCGAGCTCGGG 62.384 68.421 33.98 26.92 40.29 5.14
2057 2084 4.477975 GACACGTCGAGCTCGGGG 62.478 72.222 33.98 26.59 40.29 5.73
2059 2086 4.180946 CACGTCGAGCTCGGGGAG 62.181 72.222 33.98 23.40 40.29 4.30
2062 2089 3.213402 GTCGAGCTCGGGGAGGAG 61.213 72.222 33.98 5.43 40.29 3.69
2063 2090 4.507916 TCGAGCTCGGGGAGGAGG 62.508 72.222 33.98 4.66 40.29 4.30
2064 2091 4.824515 CGAGCTCGGGGAGGAGGT 62.825 72.222 28.40 0.00 46.68 3.85
2065 2092 3.151022 GAGCTCGGGGAGGAGGTG 61.151 72.222 0.00 0.00 44.25 4.00
2066 2093 3.663815 GAGCTCGGGGAGGAGGTGA 62.664 68.421 0.00 0.00 44.25 4.02
2067 2094 2.444895 GCTCGGGGAGGAGGTGAT 60.445 66.667 0.00 0.00 34.56 3.06
2068 2095 2.503382 GCTCGGGGAGGAGGTGATC 61.503 68.421 0.00 0.00 34.56 2.92
2069 2096 1.231641 CTCGGGGAGGAGGTGATCT 59.768 63.158 0.00 0.00 0.00 2.75
2070 2097 1.075970 TCGGGGAGGAGGTGATCTG 60.076 63.158 0.00 0.00 0.00 2.90
2071 2098 1.381872 CGGGGAGGAGGTGATCTGT 60.382 63.158 0.00 0.00 0.00 3.41
2072 2099 0.978146 CGGGGAGGAGGTGATCTGTT 60.978 60.000 0.00 0.00 0.00 3.16
2073 2100 1.688311 CGGGGAGGAGGTGATCTGTTA 60.688 57.143 0.00 0.00 0.00 2.41
2074 2101 2.695585 GGGGAGGAGGTGATCTGTTAT 58.304 52.381 0.00 0.00 0.00 1.89
2075 2102 3.049344 GGGGAGGAGGTGATCTGTTATT 58.951 50.000 0.00 0.00 0.00 1.40
2076 2103 3.071747 GGGGAGGAGGTGATCTGTTATTC 59.928 52.174 0.00 0.00 0.00 1.75
2077 2104 3.970640 GGGAGGAGGTGATCTGTTATTCT 59.029 47.826 0.00 0.00 0.00 2.40
2078 2105 4.410555 GGGAGGAGGTGATCTGTTATTCTT 59.589 45.833 0.00 0.00 0.00 2.52
2079 2106 5.104318 GGGAGGAGGTGATCTGTTATTCTTT 60.104 44.000 0.00 0.00 0.00 2.52
2080 2107 6.418946 GGAGGAGGTGATCTGTTATTCTTTT 58.581 40.000 0.00 0.00 0.00 2.27
2081 2108 6.540551 GGAGGAGGTGATCTGTTATTCTTTTC 59.459 42.308 0.00 0.00 0.00 2.29
2082 2109 7.264294 AGGAGGTGATCTGTTATTCTTTTCT 57.736 36.000 0.00 0.00 0.00 2.52
2083 2110 7.694093 AGGAGGTGATCTGTTATTCTTTTCTT 58.306 34.615 0.00 0.00 0.00 2.52
2084 2111 8.166726 AGGAGGTGATCTGTTATTCTTTTCTTT 58.833 33.333 0.00 0.00 0.00 2.52
2085 2112 8.239998 GGAGGTGATCTGTTATTCTTTTCTTTG 58.760 37.037 0.00 0.00 0.00 2.77
2086 2113 8.115490 AGGTGATCTGTTATTCTTTTCTTTGG 57.885 34.615 0.00 0.00 0.00 3.28
2087 2114 7.725844 AGGTGATCTGTTATTCTTTTCTTTGGT 59.274 33.333 0.00 0.00 0.00 3.67
2088 2115 7.809806 GGTGATCTGTTATTCTTTTCTTTGGTG 59.190 37.037 0.00 0.00 0.00 4.17
2089 2116 7.809806 GTGATCTGTTATTCTTTTCTTTGGTGG 59.190 37.037 0.00 0.00 0.00 4.61
2090 2117 6.084326 TCTGTTATTCTTTTCTTTGGTGGC 57.916 37.500 0.00 0.00 0.00 5.01
2091 2118 5.833131 TCTGTTATTCTTTTCTTTGGTGGCT 59.167 36.000 0.00 0.00 0.00 4.75
2092 2119 5.841810 TGTTATTCTTTTCTTTGGTGGCTG 58.158 37.500 0.00 0.00 0.00 4.85
2093 2120 5.362430 TGTTATTCTTTTCTTTGGTGGCTGT 59.638 36.000 0.00 0.00 0.00 4.40
2094 2121 6.127196 TGTTATTCTTTTCTTTGGTGGCTGTT 60.127 34.615 0.00 0.00 0.00 3.16
2095 2122 3.799281 TCTTTTCTTTGGTGGCTGTTG 57.201 42.857 0.00 0.00 0.00 3.33
2096 2123 3.096092 TCTTTTCTTTGGTGGCTGTTGT 58.904 40.909 0.00 0.00 0.00 3.32
2097 2124 2.957491 TTTCTTTGGTGGCTGTTGTG 57.043 45.000 0.00 0.00 0.00 3.33
2098 2125 1.110442 TTCTTTGGTGGCTGTTGTGG 58.890 50.000 0.00 0.00 0.00 4.17
2099 2126 0.033601 TCTTTGGTGGCTGTTGTGGT 60.034 50.000 0.00 0.00 0.00 4.16
2100 2127 0.102844 CTTTGGTGGCTGTTGTGGTG 59.897 55.000 0.00 0.00 0.00 4.17
2101 2128 1.326213 TTTGGTGGCTGTTGTGGTGG 61.326 55.000 0.00 0.00 0.00 4.61
2102 2129 2.123897 GGTGGCTGTTGTGGTGGT 60.124 61.111 0.00 0.00 0.00 4.16
2105 2132 1.227704 TGGCTGTTGTGGTGGTACG 60.228 57.895 0.00 0.00 0.00 3.67
2126 2153 1.029947 GTGACGCCCCCGATTCAATT 61.030 55.000 0.00 0.00 38.29 2.32
2355 2383 5.488341 CCTTAAGAAGGCTAGCACAAACTA 58.512 41.667 18.24 0.00 42.78 2.24
2613 2642 8.850033 GCAAAGAGCTACACTACATATGCATGT 61.850 40.741 10.16 3.43 43.47 3.21
2707 2736 1.128136 TCGAAGACTACGCTTCTGTCG 59.872 52.381 0.00 0.00 41.60 4.35
2751 2780 7.891183 TGTAGAAGAGAGTAGATTGAAGTCCTT 59.109 37.037 0.00 0.00 0.00 3.36
2782 2811 5.104776 GCATCTCATAGCATAATCCTACCCA 60.105 44.000 0.00 0.00 0.00 4.51
2857 2886 5.507315 GGAACTTGTCTGGGTGTGTTTTATG 60.507 44.000 0.00 0.00 0.00 1.90
2898 2931 0.971386 GGTCAAGGTACAACTCCGGA 59.029 55.000 2.93 2.93 0.00 5.14
2900 2933 2.027469 GGTCAAGGTACAACTCCGGATT 60.027 50.000 3.57 0.00 0.00 3.01
2910 2943 4.918588 ACAACTCCGGATTGTCCTTTTAT 58.081 39.130 20.01 2.89 35.32 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 2.874701 CAACTGAACTCTGAACACCCAG 59.125 50.000 0.00 0.00 35.55 4.45
89 91 4.946784 ACACAACAACTGAACTCTGAAC 57.053 40.909 0.00 0.00 0.00 3.18
170 172 0.888619 TTCGAGCCGATCTCACTGTT 59.111 50.000 0.00 0.00 41.98 3.16
183 185 1.067213 AGAAAGGCAGACTCTTCGAGC 60.067 52.381 0.00 0.00 32.04 5.03
186 188 2.732412 TCAGAAAGGCAGACTCTTCG 57.268 50.000 0.00 0.00 0.00 3.79
371 373 7.390823 TGTGCTGTAGATTTGGATAACTAACA 58.609 34.615 0.00 0.00 0.00 2.41
461 463 4.202315 GCTATCTTCTTCTTCTTCTCCCCC 60.202 50.000 0.00 0.00 0.00 5.40
464 466 6.705825 GGATTGCTATCTTCTTCTTCTTCTCC 59.294 42.308 8.06 0.00 0.00 3.71
465 467 6.705825 GGGATTGCTATCTTCTTCTTCTTCTC 59.294 42.308 8.06 0.00 0.00 2.87
466 468 6.409120 GGGGATTGCTATCTTCTTCTTCTTCT 60.409 42.308 8.06 0.00 0.00 2.85
671 673 3.772932 CAAGCGTGCAATGGATGTTAAT 58.227 40.909 0.00 0.00 0.00 1.40
696 698 2.971598 GCTGGCTACTCCCCTGCAA 61.972 63.158 4.70 0.00 44.05 4.08
697 699 3.402681 GCTGGCTACTCCCCTGCA 61.403 66.667 4.70 0.00 44.05 4.41
698 700 2.601194 GAAGCTGGCTACTCCCCTGC 62.601 65.000 0.00 1.63 44.71 4.85
699 701 1.267574 TGAAGCTGGCTACTCCCCTG 61.268 60.000 0.00 0.00 0.00 4.45
700 702 0.980231 CTGAAGCTGGCTACTCCCCT 60.980 60.000 0.00 0.00 0.00 4.79
701 703 1.268283 ACTGAAGCTGGCTACTCCCC 61.268 60.000 0.00 0.00 0.00 4.81
785 803 6.043706 TCCTTCTTCTTTCTCTCTTCCATGTT 59.956 38.462 0.00 0.00 0.00 2.71
846 865 7.564988 GTTGAACAACTTACTAAGTACTGCTG 58.435 38.462 9.98 0.00 41.91 4.41
864 886 6.533730 ACCTATGAGATTTGACAGTTGAACA 58.466 36.000 0.00 0.00 0.00 3.18
931 958 4.280019 GGGGGTGCGGTGGTCTTT 62.280 66.667 0.00 0.00 0.00 2.52
971 998 0.940126 GTGTGTGTGTCTTGCTCTGG 59.060 55.000 0.00 0.00 0.00 3.86
1087 1114 9.209175 CATTGAAGTTAAAGAACTAGCTACTGT 57.791 33.333 0.00 0.00 45.50 3.55
1088 1115 8.171840 GCATTGAAGTTAAAGAACTAGCTACTG 58.828 37.037 0.00 0.00 45.50 2.74
1089 1116 7.878127 TGCATTGAAGTTAAAGAACTAGCTACT 59.122 33.333 0.00 0.00 45.50 2.57
1090 1117 8.029642 TGCATTGAAGTTAAAGAACTAGCTAC 57.970 34.615 0.00 0.00 45.50 3.58
1146 1173 1.476891 CCACCGTGTACATACTCTGCT 59.523 52.381 0.00 0.00 0.00 4.24
1166 1193 2.849880 TAGGCGTACGGACATTACAC 57.150 50.000 18.39 0.00 0.00 2.90
1196 1223 2.650196 GCCGCTGCAAACCATCAA 59.350 55.556 0.00 0.00 37.47 2.57
1250 1277 2.594962 CGACTCGGCGCAGTTGTTT 61.595 57.895 10.83 0.00 0.00 2.83
1565 1592 4.072088 GACACGGGCGCGTTGAAG 62.072 66.667 27.41 17.41 0.00 3.02
1577 1604 4.735132 ACCGGCGTCATGGACACG 62.735 66.667 6.01 1.31 40.35 4.49
1972 1999 2.814805 ATCATATGCCCCATGTAGCC 57.185 50.000 0.00 0.00 0.00 3.93
1982 2009 5.046304 ACACCCTCATACTGTATCATATGCC 60.046 44.000 0.00 0.00 0.00 4.40
1984 2011 7.388776 CCAAACACCCTCATACTGTATCATATG 59.611 40.741 0.00 0.00 0.00 1.78
2047 2074 4.824515 ACCTCCTCCCCGAGCTCG 62.825 72.222 29.06 29.06 39.44 5.03
2048 2075 2.937959 ATCACCTCCTCCCCGAGCTC 62.938 65.000 2.73 2.73 0.00 4.09
2049 2076 2.937959 GATCACCTCCTCCCCGAGCT 62.938 65.000 0.00 0.00 0.00 4.09
2050 2077 2.444895 ATCACCTCCTCCCCGAGC 60.445 66.667 0.00 0.00 0.00 5.03
2051 2078 1.112315 CAGATCACCTCCTCCCCGAG 61.112 65.000 0.00 0.00 0.00 4.63
2052 2079 1.075970 CAGATCACCTCCTCCCCGA 60.076 63.158 0.00 0.00 0.00 5.14
2053 2080 0.978146 AACAGATCACCTCCTCCCCG 60.978 60.000 0.00 0.00 0.00 5.73
2054 2081 2.176247 TAACAGATCACCTCCTCCCC 57.824 55.000 0.00 0.00 0.00 4.81
2055 2082 3.970640 AGAATAACAGATCACCTCCTCCC 59.029 47.826 0.00 0.00 0.00 4.30
2056 2083 5.622346 AAGAATAACAGATCACCTCCTCC 57.378 43.478 0.00 0.00 0.00 4.30
2057 2084 7.334858 AGAAAAGAATAACAGATCACCTCCTC 58.665 38.462 0.00 0.00 0.00 3.71
2058 2085 7.264294 AGAAAAGAATAACAGATCACCTCCT 57.736 36.000 0.00 0.00 0.00 3.69
2059 2086 7.929941 AAGAAAAGAATAACAGATCACCTCC 57.070 36.000 0.00 0.00 0.00 4.30
2060 2087 8.239998 CCAAAGAAAAGAATAACAGATCACCTC 58.760 37.037 0.00 0.00 0.00 3.85
2061 2088 7.725844 ACCAAAGAAAAGAATAACAGATCACCT 59.274 33.333 0.00 0.00 0.00 4.00
2062 2089 7.809806 CACCAAAGAAAAGAATAACAGATCACC 59.190 37.037 0.00 0.00 0.00 4.02
2063 2090 7.809806 CCACCAAAGAAAAGAATAACAGATCAC 59.190 37.037 0.00 0.00 0.00 3.06
2064 2091 7.523709 GCCACCAAAGAAAAGAATAACAGATCA 60.524 37.037 0.00 0.00 0.00 2.92
2065 2092 6.808704 GCCACCAAAGAAAAGAATAACAGATC 59.191 38.462 0.00 0.00 0.00 2.75
2066 2093 6.494835 AGCCACCAAAGAAAAGAATAACAGAT 59.505 34.615 0.00 0.00 0.00 2.90
2067 2094 5.833131 AGCCACCAAAGAAAAGAATAACAGA 59.167 36.000 0.00 0.00 0.00 3.41
2068 2095 5.922544 CAGCCACCAAAGAAAAGAATAACAG 59.077 40.000 0.00 0.00 0.00 3.16
2069 2096 5.362430 ACAGCCACCAAAGAAAAGAATAACA 59.638 36.000 0.00 0.00 0.00 2.41
2070 2097 5.842907 ACAGCCACCAAAGAAAAGAATAAC 58.157 37.500 0.00 0.00 0.00 1.89
2071 2098 6.127196 ACAACAGCCACCAAAGAAAAGAATAA 60.127 34.615 0.00 0.00 0.00 1.40
2072 2099 5.362430 ACAACAGCCACCAAAGAAAAGAATA 59.638 36.000 0.00 0.00 0.00 1.75
2073 2100 4.162131 ACAACAGCCACCAAAGAAAAGAAT 59.838 37.500 0.00 0.00 0.00 2.40
2074 2101 3.513515 ACAACAGCCACCAAAGAAAAGAA 59.486 39.130 0.00 0.00 0.00 2.52
2075 2102 3.096092 ACAACAGCCACCAAAGAAAAGA 58.904 40.909 0.00 0.00 0.00 2.52
2076 2103 3.189285 CACAACAGCCACCAAAGAAAAG 58.811 45.455 0.00 0.00 0.00 2.27
2077 2104 2.093764 CCACAACAGCCACCAAAGAAAA 60.094 45.455 0.00 0.00 0.00 2.29
2078 2105 1.480137 CCACAACAGCCACCAAAGAAA 59.520 47.619 0.00 0.00 0.00 2.52
2079 2106 1.110442 CCACAACAGCCACCAAAGAA 58.890 50.000 0.00 0.00 0.00 2.52
2080 2107 0.033601 ACCACAACAGCCACCAAAGA 60.034 50.000 0.00 0.00 0.00 2.52
2081 2108 0.102844 CACCACAACAGCCACCAAAG 59.897 55.000 0.00 0.00 0.00 2.77
2082 2109 1.326213 CCACCACAACAGCCACCAAA 61.326 55.000 0.00 0.00 0.00 3.28
2083 2110 1.756172 CCACCACAACAGCCACCAA 60.756 57.895 0.00 0.00 0.00 3.67
2084 2111 1.636769 TACCACCACAACAGCCACCA 61.637 55.000 0.00 0.00 0.00 4.17
2085 2112 1.149627 TACCACCACAACAGCCACC 59.850 57.895 0.00 0.00 0.00 4.61
2086 2113 1.503818 CGTACCACCACAACAGCCAC 61.504 60.000 0.00 0.00 0.00 5.01
2087 2114 1.227704 CGTACCACCACAACAGCCA 60.228 57.895 0.00 0.00 0.00 4.75
2088 2115 1.227734 ACGTACCACCACAACAGCC 60.228 57.895 0.00 0.00 0.00 4.85
2089 2116 0.812412 ACACGTACCACCACAACAGC 60.812 55.000 0.00 0.00 0.00 4.40
2090 2117 0.934496 CACACGTACCACCACAACAG 59.066 55.000 0.00 0.00 0.00 3.16
2091 2118 0.535797 TCACACGTACCACCACAACA 59.464 50.000 0.00 0.00 0.00 3.33
2092 2119 0.932399 GTCACACGTACCACCACAAC 59.068 55.000 0.00 0.00 0.00 3.32
2093 2120 0.528033 CGTCACACGTACCACCACAA 60.528 55.000 0.00 0.00 36.74 3.33
2094 2121 1.066093 CGTCACACGTACCACCACA 59.934 57.895 0.00 0.00 36.74 4.17
2095 2122 2.305127 GCGTCACACGTACCACCAC 61.305 63.158 0.00 0.00 44.73 4.16
2096 2123 2.027897 GCGTCACACGTACCACCA 59.972 61.111 0.00 0.00 44.73 4.17
2097 2124 2.735857 GGCGTCACACGTACCACC 60.736 66.667 0.00 0.00 44.73 4.61
2098 2125 2.735857 GGGCGTCACACGTACCAC 60.736 66.667 0.00 0.00 44.73 4.16
2099 2126 3.993584 GGGGCGTCACACGTACCA 61.994 66.667 11.98 0.00 44.73 3.25
2100 2127 4.747529 GGGGGCGTCACACGTACC 62.748 72.222 0.00 1.18 44.73 3.34
2105 2132 2.818274 GAATCGGGGGCGTCACAC 60.818 66.667 0.00 0.00 0.00 3.82
2126 2153 8.760569 CATATTTGCGTGTATGATTAGTGTACA 58.239 33.333 0.00 0.00 31.48 2.90
2251 2279 3.982576 TCGAGCACTTATATTCGAGCA 57.017 42.857 0.00 0.00 37.18 4.26
2355 2383 2.294791 CGCCTCTTTCGATCTGTATCCT 59.705 50.000 0.00 0.00 0.00 3.24
2504 2532 4.134623 TGGTTGTCGCAACCAGAC 57.865 55.556 28.84 12.37 44.74 3.51
2613 2642 6.403049 CGATATGGCCCTTTACACATATACA 58.597 40.000 0.00 0.00 36.83 2.29
2707 2736 1.022735 CATGCTGCAAGATGGAGGTC 58.977 55.000 6.36 0.00 36.25 3.85
2751 2780 7.179872 AGGATTATGCTATGAGATGCTACTTGA 59.820 37.037 0.00 0.00 0.00 3.02
2763 2792 3.195610 CGCTGGGTAGGATTATGCTATGA 59.804 47.826 0.00 0.00 0.00 2.15
2857 2886 5.163437 ACCTTATGACAACTAGAACCGGATC 60.163 44.000 9.46 5.83 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.