Multiple sequence alignment - TraesCS4B01G140100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G140100 chr4B 100.000 2909 0 0 1 2909 184300056 184302964 0.000000e+00 5373
1 TraesCS4B01G140100 chr4A 93.212 2578 122 14 365 2907 449400775 449398216 0.000000e+00 3742
2 TraesCS4B01G140100 chr4D 94.796 1768 61 7 362 2098 121473318 121475085 0.000000e+00 2726
3 TraesCS4B01G140100 chr4D 93.567 171 8 1 2096 2266 121475124 121475291 4.810000e-63 252
4 TraesCS4B01G140100 chr6D 95.518 357 16 0 1 357 56395924 56395568 3.250000e-159 571
5 TraesCS4B01G140100 chr2D 95.238 357 17 0 1 357 638775757 638776113 1.510000e-157 566
6 TraesCS4B01G140100 chr2D 84.768 151 23 0 2536 2686 406958412 406958562 5.020000e-33 152
7 TraesCS4B01G140100 chr7D 94.958 357 18 0 1 357 568380538 568380894 7.040000e-156 560
8 TraesCS4B01G140100 chr7D 94.678 357 19 0 1 357 91122454 91122810 3.280000e-154 555
9 TraesCS4B01G140100 chr7D 94.678 357 19 0 1 357 610710941 610711297 3.280000e-154 555
10 TraesCS4B01G140100 chr7D 91.195 159 12 2 2532 2690 552281643 552281799 6.310000e-52 215
11 TraesCS4B01G140100 chr5D 94.958 357 18 0 1 357 501156708 501156352 7.040000e-156 560
12 TraesCS4B01G140100 chr3D 94.678 357 19 0 1 357 24751810 24751454 3.280000e-154 555
13 TraesCS4B01G140100 chr3D 94.678 357 19 0 1 357 306013612 306013256 3.280000e-154 555
14 TraesCS4B01G140100 chr1D 94.678 357 19 0 1 357 473629967 473629611 3.280000e-154 555
15 TraesCS4B01G140100 chr7A 91.824 159 12 1 2532 2690 637915527 637915684 1.360000e-53 220
16 TraesCS4B01G140100 chr7B 92.053 151 12 0 2536 2686 106804251 106804101 2.270000e-51 213
17 TraesCS4B01G140100 chr3B 90.909 132 11 1 2555 2686 655635116 655634986 2.980000e-40 176
18 TraesCS4B01G140100 chr3B 87.234 141 17 1 2547 2686 118507411 118507271 3.000000e-35 159
19 TraesCS4B01G140100 chr3B 81.818 154 28 0 2533 2686 528176345 528176192 2.350000e-26 130
20 TraesCS4B01G140100 chr5B 82.895 152 21 4 2536 2685 680316088 680316236 6.540000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G140100 chr4B 184300056 184302964 2908 False 5373 5373 100.0000 1 2909 1 chr4B.!!$F1 2908
1 TraesCS4B01G140100 chr4A 449398216 449400775 2559 True 3742 3742 93.2120 365 2907 1 chr4A.!!$R1 2542
2 TraesCS4B01G140100 chr4D 121473318 121475291 1973 False 1489 2726 94.1815 362 2266 2 chr4D.!!$F1 1904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 228 0.034089 ACCATTTACTGAGCAGGGCC 60.034 55.0 0.00 0.0 0.0 5.80 F
238 239 0.034670 AGCAGGGCCTCATTCTTGAC 60.035 55.0 0.95 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1871 1895 0.323629 TTGGCGAAAGGAGACGGAAT 59.676 50.000 0.00 0.0 0.00 3.01 R
1945 1985 4.261825 CCTTTGGCCAACAACGAAGAATTA 60.262 41.667 20.35 0.0 39.19 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.406442 AGCCAGATGTCTTCCCAGA 57.594 52.632 0.00 0.00 0.00 3.86
19 20 1.661463 AGCCAGATGTCTTCCCAGAA 58.339 50.000 0.00 0.00 0.00 3.02
20 21 1.988107 AGCCAGATGTCTTCCCAGAAA 59.012 47.619 0.00 0.00 0.00 2.52
21 22 2.087646 GCCAGATGTCTTCCCAGAAAC 58.912 52.381 0.00 0.00 0.00 2.78
22 23 2.350522 CCAGATGTCTTCCCAGAAACG 58.649 52.381 0.00 0.00 0.00 3.60
23 24 2.028112 CCAGATGTCTTCCCAGAAACGA 60.028 50.000 0.00 0.00 0.00 3.85
24 25 3.557054 CCAGATGTCTTCCCAGAAACGAA 60.557 47.826 0.00 0.00 0.00 3.85
25 26 4.256920 CAGATGTCTTCCCAGAAACGAAT 58.743 43.478 0.00 0.00 0.00 3.34
26 27 4.331168 CAGATGTCTTCCCAGAAACGAATC 59.669 45.833 0.00 0.00 0.00 2.52
27 28 4.223923 AGATGTCTTCCCAGAAACGAATCT 59.776 41.667 0.00 0.00 0.00 2.40
28 29 3.926616 TGTCTTCCCAGAAACGAATCTC 58.073 45.455 0.00 0.00 0.00 2.75
29 30 3.263261 GTCTTCCCAGAAACGAATCTCC 58.737 50.000 0.00 0.00 0.00 3.71
30 31 2.094182 TCTTCCCAGAAACGAATCTCCG 60.094 50.000 0.00 0.00 0.00 4.63
31 32 1.552578 TCCCAGAAACGAATCTCCGA 58.447 50.000 0.00 0.00 0.00 4.55
32 33 1.203994 TCCCAGAAACGAATCTCCGAC 59.796 52.381 0.00 0.00 0.00 4.79
33 34 1.641577 CCAGAAACGAATCTCCGACC 58.358 55.000 0.00 0.00 0.00 4.79
34 35 1.641577 CAGAAACGAATCTCCGACCC 58.358 55.000 0.00 0.00 0.00 4.46
35 36 0.172803 AGAAACGAATCTCCGACCCG 59.827 55.000 0.00 0.00 0.00 5.28
36 37 0.108945 GAAACGAATCTCCGACCCGT 60.109 55.000 0.00 0.00 34.74 5.28
37 38 0.108945 AAACGAATCTCCGACCCGTC 60.109 55.000 0.00 0.00 32.64 4.79
38 39 0.964358 AACGAATCTCCGACCCGTCT 60.964 55.000 0.00 0.00 32.64 4.18
39 40 0.964358 ACGAATCTCCGACCCGTCTT 60.964 55.000 0.00 0.00 0.00 3.01
40 41 0.172803 CGAATCTCCGACCCGTCTTT 59.827 55.000 0.00 0.00 0.00 2.52
41 42 1.403780 CGAATCTCCGACCCGTCTTTT 60.404 52.381 0.00 0.00 0.00 2.27
42 43 2.159338 CGAATCTCCGACCCGTCTTTTA 60.159 50.000 0.00 0.00 0.00 1.52
43 44 3.490419 CGAATCTCCGACCCGTCTTTTAT 60.490 47.826 0.00 0.00 0.00 1.40
44 45 3.729862 ATCTCCGACCCGTCTTTTATC 57.270 47.619 0.00 0.00 0.00 1.75
45 46 1.402968 TCTCCGACCCGTCTTTTATCG 59.597 52.381 0.00 0.00 0.00 2.92
46 47 0.179129 TCCGACCCGTCTTTTATCGC 60.179 55.000 0.00 0.00 0.00 4.58
47 48 1.477030 CCGACCCGTCTTTTATCGCG 61.477 60.000 0.00 0.00 0.00 5.87
48 49 0.523968 CGACCCGTCTTTTATCGCGA 60.524 55.000 13.09 13.09 0.00 5.87
49 50 1.632422 GACCCGTCTTTTATCGCGAA 58.368 50.000 15.24 0.00 0.00 4.70
50 51 1.994779 GACCCGTCTTTTATCGCGAAA 59.005 47.619 15.24 6.24 0.00 3.46
51 52 1.997606 ACCCGTCTTTTATCGCGAAAG 59.002 47.619 15.24 13.17 35.85 2.62
52 53 2.264813 CCCGTCTTTTATCGCGAAAGA 58.735 47.619 15.24 15.59 39.95 2.52
56 57 3.322211 TCTTTTATCGCGAAAGACCCA 57.678 42.857 15.24 0.00 38.00 4.51
57 58 3.666274 TCTTTTATCGCGAAAGACCCAA 58.334 40.909 15.24 0.00 38.00 4.12
58 59 4.066490 TCTTTTATCGCGAAAGACCCAAA 58.934 39.130 15.24 3.89 38.00 3.28
59 60 4.153475 TCTTTTATCGCGAAAGACCCAAAG 59.847 41.667 15.24 13.10 38.00 2.77
60 61 2.754946 TATCGCGAAAGACCCAAAGT 57.245 45.000 15.24 0.00 0.00 2.66
61 62 1.156736 ATCGCGAAAGACCCAAAGTG 58.843 50.000 15.24 0.00 0.00 3.16
62 63 0.105224 TCGCGAAAGACCCAAAGTGA 59.895 50.000 6.20 0.00 0.00 3.41
63 64 0.941542 CGCGAAAGACCCAAAGTGAA 59.058 50.000 0.00 0.00 0.00 3.18
64 65 1.332375 CGCGAAAGACCCAAAGTGAAA 59.668 47.619 0.00 0.00 0.00 2.69
65 66 2.602217 CGCGAAAGACCCAAAGTGAAAG 60.602 50.000 0.00 0.00 0.00 2.62
66 67 2.616842 GCGAAAGACCCAAAGTGAAAGA 59.383 45.455 0.00 0.00 0.00 2.52
67 68 3.304057 GCGAAAGACCCAAAGTGAAAGAG 60.304 47.826 0.00 0.00 0.00 2.85
68 69 4.127171 CGAAAGACCCAAAGTGAAAGAGA 58.873 43.478 0.00 0.00 0.00 3.10
69 70 4.757149 CGAAAGACCCAAAGTGAAAGAGAT 59.243 41.667 0.00 0.00 0.00 2.75
70 71 5.334414 CGAAAGACCCAAAGTGAAAGAGATG 60.334 44.000 0.00 0.00 0.00 2.90
71 72 4.713792 AGACCCAAAGTGAAAGAGATGT 57.286 40.909 0.00 0.00 0.00 3.06
72 73 5.053978 AGACCCAAAGTGAAAGAGATGTT 57.946 39.130 0.00 0.00 0.00 2.71
73 74 5.449553 AGACCCAAAGTGAAAGAGATGTTT 58.550 37.500 0.00 0.00 0.00 2.83
74 75 5.532779 AGACCCAAAGTGAAAGAGATGTTTC 59.467 40.000 0.00 0.00 37.02 2.78
75 76 5.449553 ACCCAAAGTGAAAGAGATGTTTCT 58.550 37.500 4.37 0.00 37.34 2.52
76 77 5.893824 ACCCAAAGTGAAAGAGATGTTTCTT 59.106 36.000 4.37 0.00 39.03 2.52
78 79 6.698766 CCCAAAGTGAAAGAGATGTTTCTTTG 59.301 38.462 5.80 0.00 45.00 2.77
79 80 6.199719 CCAAAGTGAAAGAGATGTTTCTTTGC 59.800 38.462 5.80 0.26 45.00 3.68
80 81 5.444663 AGTGAAAGAGATGTTTCTTTGCC 57.555 39.130 5.80 0.00 45.00 4.52
81 82 4.889409 AGTGAAAGAGATGTTTCTTTGCCA 59.111 37.500 5.80 0.00 45.00 4.92
82 83 4.978580 GTGAAAGAGATGTTTCTTTGCCAC 59.021 41.667 5.80 5.48 45.00 5.01
83 84 4.037923 TGAAAGAGATGTTTCTTTGCCACC 59.962 41.667 5.80 0.00 45.00 4.61
84 85 3.228188 AGAGATGTTTCTTTGCCACCA 57.772 42.857 0.00 0.00 30.30 4.17
85 86 3.771216 AGAGATGTTTCTTTGCCACCAT 58.229 40.909 0.00 0.00 30.30 3.55
86 87 4.154942 AGAGATGTTTCTTTGCCACCATT 58.845 39.130 0.00 0.00 30.30 3.16
87 88 5.324409 AGAGATGTTTCTTTGCCACCATTA 58.676 37.500 0.00 0.00 30.30 1.90
88 89 5.416952 AGAGATGTTTCTTTGCCACCATTAG 59.583 40.000 0.00 0.00 30.30 1.73
89 90 4.463891 AGATGTTTCTTTGCCACCATTAGG 59.536 41.667 0.00 0.00 42.21 2.69
90 91 8.772036 GAGATGTTTCTTTGCCACCATTAGGC 62.772 46.154 0.00 0.00 41.74 3.93
95 96 2.834968 GCCACCATTAGGCCAGCC 60.835 66.667 5.01 0.00 46.50 4.85
96 97 2.123726 CCACCATTAGGCCAGCCC 60.124 66.667 5.01 0.00 39.06 5.19
97 98 2.682846 CACCATTAGGCCAGCCCA 59.317 61.111 5.01 0.00 39.06 5.36
98 99 1.454479 CACCATTAGGCCAGCCCAG 60.454 63.158 5.01 0.00 39.06 4.45
99 100 1.619363 ACCATTAGGCCAGCCCAGA 60.619 57.895 5.01 0.00 39.06 3.86
100 101 1.214305 ACCATTAGGCCAGCCCAGAA 61.214 55.000 5.01 0.00 39.06 3.02
101 102 0.466922 CCATTAGGCCAGCCCAGAAG 60.467 60.000 5.01 0.00 36.58 2.85
102 103 0.257039 CATTAGGCCAGCCCAGAAGT 59.743 55.000 5.01 0.00 36.58 3.01
103 104 0.257039 ATTAGGCCAGCCCAGAAGTG 59.743 55.000 5.01 0.00 36.58 3.16
104 105 2.484287 TTAGGCCAGCCCAGAAGTGC 62.484 60.000 5.01 0.00 36.58 4.40
106 107 4.704833 GCCAGCCCAGAAGTGCGA 62.705 66.667 0.00 0.00 0.00 5.10
107 108 2.435586 CCAGCCCAGAAGTGCGAG 60.436 66.667 0.00 0.00 0.00 5.03
108 109 2.345244 CAGCCCAGAAGTGCGAGT 59.655 61.111 0.00 0.00 0.00 4.18
109 110 1.739562 CAGCCCAGAAGTGCGAGTC 60.740 63.158 0.00 0.00 0.00 3.36
110 111 2.210013 AGCCCAGAAGTGCGAGTCA 61.210 57.895 0.00 0.00 0.00 3.41
111 112 2.029844 GCCCAGAAGTGCGAGTCAC 61.030 63.158 0.00 0.00 45.98 3.67
112 113 1.374758 CCCAGAAGTGCGAGTCACC 60.375 63.158 0.00 0.00 46.81 4.02
113 114 1.367471 CCAGAAGTGCGAGTCACCA 59.633 57.895 0.00 0.00 46.81 4.17
114 115 0.668706 CCAGAAGTGCGAGTCACCAG 60.669 60.000 0.00 0.00 46.81 4.00
115 116 0.668706 CAGAAGTGCGAGTCACCAGG 60.669 60.000 0.00 0.00 46.81 4.45
116 117 1.115930 AGAAGTGCGAGTCACCAGGT 61.116 55.000 0.00 0.00 46.81 4.00
117 118 0.249911 GAAGTGCGAGTCACCAGGTT 60.250 55.000 0.00 0.00 46.81 3.50
118 119 0.180406 AAGTGCGAGTCACCAGGTTT 59.820 50.000 0.00 0.00 46.81 3.27
119 120 0.249911 AGTGCGAGTCACCAGGTTTC 60.250 55.000 0.00 0.00 46.81 2.78
120 121 1.070786 TGCGAGTCACCAGGTTTCC 59.929 57.895 0.00 0.00 0.00 3.13
121 122 1.070786 GCGAGTCACCAGGTTTCCA 59.929 57.895 0.00 0.00 0.00 3.53
122 123 0.534203 GCGAGTCACCAGGTTTCCAA 60.534 55.000 0.00 0.00 0.00 3.53
123 124 1.882352 GCGAGTCACCAGGTTTCCAAT 60.882 52.381 0.00 0.00 0.00 3.16
124 125 2.614481 GCGAGTCACCAGGTTTCCAATA 60.614 50.000 0.00 0.00 0.00 1.90
125 126 3.873910 CGAGTCACCAGGTTTCCAATAT 58.126 45.455 0.00 0.00 0.00 1.28
126 127 3.623060 CGAGTCACCAGGTTTCCAATATG 59.377 47.826 0.00 0.00 0.00 1.78
127 128 3.356290 AGTCACCAGGTTTCCAATATGC 58.644 45.455 0.00 0.00 0.00 3.14
128 129 2.427095 GTCACCAGGTTTCCAATATGCC 59.573 50.000 0.00 0.00 0.00 4.40
129 130 1.756538 CACCAGGTTTCCAATATGCCC 59.243 52.381 0.00 0.00 0.00 5.36
130 131 1.032014 CCAGGTTTCCAATATGCCCG 58.968 55.000 0.00 0.00 0.00 6.13
131 132 1.032014 CAGGTTTCCAATATGCCCGG 58.968 55.000 0.00 0.00 0.00 5.73
132 133 0.106217 AGGTTTCCAATATGCCCGGG 60.106 55.000 19.09 19.09 0.00 5.73
133 134 0.106419 GGTTTCCAATATGCCCGGGA 60.106 55.000 29.31 10.35 0.00 5.14
134 135 1.029681 GTTTCCAATATGCCCGGGAC 58.970 55.000 29.31 16.95 0.00 4.46
135 136 0.626382 TTTCCAATATGCCCGGGACA 59.374 50.000 29.31 22.65 0.00 4.02
136 137 0.106918 TTCCAATATGCCCGGGACAC 60.107 55.000 29.31 7.28 0.00 3.67
137 138 1.528309 CCAATATGCCCGGGACACC 60.528 63.158 29.31 6.82 0.00 4.16
147 148 3.351450 GGGACACCGCCTTTTGAC 58.649 61.111 0.00 0.00 0.00 3.18
148 149 2.265904 GGGACACCGCCTTTTGACC 61.266 63.158 0.00 0.00 0.00 4.02
149 150 1.228154 GGACACCGCCTTTTGACCT 60.228 57.895 0.00 0.00 0.00 3.85
150 151 0.035739 GGACACCGCCTTTTGACCTA 59.964 55.000 0.00 0.00 0.00 3.08
151 152 1.439679 GACACCGCCTTTTGACCTAG 58.560 55.000 0.00 0.00 0.00 3.02
152 153 1.001633 GACACCGCCTTTTGACCTAGA 59.998 52.381 0.00 0.00 0.00 2.43
153 154 1.628846 ACACCGCCTTTTGACCTAGAT 59.371 47.619 0.00 0.00 0.00 1.98
154 155 2.835764 ACACCGCCTTTTGACCTAGATA 59.164 45.455 0.00 0.00 0.00 1.98
155 156 3.195661 CACCGCCTTTTGACCTAGATAC 58.804 50.000 0.00 0.00 0.00 2.24
156 157 3.105283 ACCGCCTTTTGACCTAGATACT 58.895 45.455 0.00 0.00 0.00 2.12
157 158 3.518303 ACCGCCTTTTGACCTAGATACTT 59.482 43.478 0.00 0.00 0.00 2.24
158 159 3.871594 CCGCCTTTTGACCTAGATACTTG 59.128 47.826 0.00 0.00 0.00 3.16
159 160 4.504858 CGCCTTTTGACCTAGATACTTGT 58.495 43.478 0.00 0.00 0.00 3.16
160 161 4.935808 CGCCTTTTGACCTAGATACTTGTT 59.064 41.667 0.00 0.00 0.00 2.83
161 162 5.411669 CGCCTTTTGACCTAGATACTTGTTT 59.588 40.000 0.00 0.00 0.00 2.83
162 163 6.402226 CGCCTTTTGACCTAGATACTTGTTTC 60.402 42.308 0.00 0.00 0.00 2.78
163 164 6.402226 GCCTTTTGACCTAGATACTTGTTTCG 60.402 42.308 0.00 0.00 0.00 3.46
164 165 6.402226 CCTTTTGACCTAGATACTTGTTTCGC 60.402 42.308 0.00 0.00 0.00 4.70
165 166 4.794278 TGACCTAGATACTTGTTTCGCA 57.206 40.909 0.00 0.00 0.00 5.10
166 167 5.142061 TGACCTAGATACTTGTTTCGCAA 57.858 39.130 0.00 0.00 35.50 4.85
167 168 4.927425 TGACCTAGATACTTGTTTCGCAAC 59.073 41.667 0.00 0.00 32.90 4.17
168 169 4.890088 ACCTAGATACTTGTTTCGCAACA 58.110 39.130 0.00 0.00 41.39 3.33
169 170 5.488341 ACCTAGATACTTGTTTCGCAACAT 58.512 37.500 0.43 0.00 42.66 2.71
170 171 5.351465 ACCTAGATACTTGTTTCGCAACATG 59.649 40.000 11.28 11.28 42.66 3.21
171 172 5.580691 CCTAGATACTTGTTTCGCAACATGA 59.419 40.000 18.02 5.09 42.66 3.07
172 173 6.258727 CCTAGATACTTGTTTCGCAACATGAT 59.741 38.462 18.02 8.82 42.66 2.45
173 174 6.500684 AGATACTTGTTTCGCAACATGATT 57.499 33.333 18.02 6.83 42.66 2.57
174 175 6.913170 AGATACTTGTTTCGCAACATGATTT 58.087 32.000 18.02 4.80 42.66 2.17
175 176 6.803320 AGATACTTGTTTCGCAACATGATTTG 59.197 34.615 18.02 0.00 42.66 2.32
183 184 3.524763 GCAACATGATTTGCCAAACAC 57.475 42.857 9.34 0.00 45.22 3.32
184 185 2.223845 GCAACATGATTTGCCAAACACC 59.776 45.455 9.34 0.00 45.22 4.16
185 186 3.464907 CAACATGATTTGCCAAACACCA 58.535 40.909 0.00 0.00 0.00 4.17
186 187 4.066490 CAACATGATTTGCCAAACACCAT 58.934 39.130 0.00 0.00 0.00 3.55
187 188 3.929094 ACATGATTTGCCAAACACCATC 58.071 40.909 0.00 0.00 0.00 3.51
188 189 3.264104 CATGATTTGCCAAACACCATCC 58.736 45.455 0.00 0.00 0.00 3.51
189 190 2.607499 TGATTTGCCAAACACCATCCT 58.393 42.857 0.00 0.00 0.00 3.24
190 191 2.562298 TGATTTGCCAAACACCATCCTC 59.438 45.455 0.00 0.00 0.00 3.71
191 192 2.079170 TTTGCCAAACACCATCCTCA 57.921 45.000 0.00 0.00 0.00 3.86
192 193 1.619654 TTGCCAAACACCATCCTCAG 58.380 50.000 0.00 0.00 0.00 3.35
193 194 0.478072 TGCCAAACACCATCCTCAGT 59.522 50.000 0.00 0.00 0.00 3.41
194 195 1.702401 TGCCAAACACCATCCTCAGTA 59.298 47.619 0.00 0.00 0.00 2.74
195 196 2.107378 TGCCAAACACCATCCTCAGTAA 59.893 45.455 0.00 0.00 0.00 2.24
196 197 2.749621 GCCAAACACCATCCTCAGTAAG 59.250 50.000 0.00 0.00 0.00 2.34
197 198 3.559171 GCCAAACACCATCCTCAGTAAGA 60.559 47.826 0.00 0.00 0.00 2.10
198 199 4.651778 CCAAACACCATCCTCAGTAAGAA 58.348 43.478 0.00 0.00 0.00 2.52
199 200 4.697352 CCAAACACCATCCTCAGTAAGAAG 59.303 45.833 0.00 0.00 0.00 2.85
200 201 5.308825 CAAACACCATCCTCAGTAAGAAGT 58.691 41.667 0.00 0.00 0.00 3.01
201 202 5.568620 AACACCATCCTCAGTAAGAAGTT 57.431 39.130 0.00 0.00 0.00 2.66
202 203 5.568620 ACACCATCCTCAGTAAGAAGTTT 57.431 39.130 0.00 0.00 0.00 2.66
203 204 5.308825 ACACCATCCTCAGTAAGAAGTTTG 58.691 41.667 0.00 0.00 0.00 2.93
204 205 5.071788 ACACCATCCTCAGTAAGAAGTTTGA 59.928 40.000 0.00 0.00 0.00 2.69
205 206 5.997746 CACCATCCTCAGTAAGAAGTTTGAA 59.002 40.000 0.00 0.00 0.00 2.69
206 207 5.998363 ACCATCCTCAGTAAGAAGTTTGAAC 59.002 40.000 0.00 0.00 0.00 3.18
207 208 5.997746 CCATCCTCAGTAAGAAGTTTGAACA 59.002 40.000 0.00 0.00 0.00 3.18
208 209 6.486657 CCATCCTCAGTAAGAAGTTTGAACAA 59.513 38.462 0.00 0.00 0.00 2.83
209 210 6.920569 TCCTCAGTAAGAAGTTTGAACAAC 57.079 37.500 0.00 0.00 0.00 3.32
210 211 5.820947 TCCTCAGTAAGAAGTTTGAACAACC 59.179 40.000 0.00 0.00 0.00 3.77
211 212 5.588648 CCTCAGTAAGAAGTTTGAACAACCA 59.411 40.000 0.00 0.00 0.00 3.67
212 213 6.263168 CCTCAGTAAGAAGTTTGAACAACCAT 59.737 38.462 0.00 0.00 0.00 3.55
213 214 7.201821 CCTCAGTAAGAAGTTTGAACAACCATT 60.202 37.037 0.00 0.00 0.00 3.16
214 215 8.062065 TCAGTAAGAAGTTTGAACAACCATTT 57.938 30.769 0.00 0.00 0.00 2.32
215 216 9.179909 TCAGTAAGAAGTTTGAACAACCATTTA 57.820 29.630 0.00 0.00 0.00 1.40
216 217 9.233232 CAGTAAGAAGTTTGAACAACCATTTAC 57.767 33.333 0.00 0.00 0.00 2.01
217 218 9.185680 AGTAAGAAGTTTGAACAACCATTTACT 57.814 29.630 0.00 0.00 0.00 2.24
218 219 9.233232 GTAAGAAGTTTGAACAACCATTTACTG 57.767 33.333 0.00 0.00 0.00 2.74
219 220 7.639113 AGAAGTTTGAACAACCATTTACTGA 57.361 32.000 0.00 0.00 0.00 3.41
220 221 7.707104 AGAAGTTTGAACAACCATTTACTGAG 58.293 34.615 0.00 0.00 0.00 3.35
221 222 5.831997 AGTTTGAACAACCATTTACTGAGC 58.168 37.500 0.00 0.00 0.00 4.26
222 223 5.359576 AGTTTGAACAACCATTTACTGAGCA 59.640 36.000 0.00 0.00 0.00 4.26
223 224 5.437289 TTGAACAACCATTTACTGAGCAG 57.563 39.130 0.00 0.00 0.00 4.24
224 225 3.820467 TGAACAACCATTTACTGAGCAGG 59.180 43.478 2.20 0.00 0.00 4.85
225 226 2.795329 ACAACCATTTACTGAGCAGGG 58.205 47.619 2.20 0.00 0.00 4.45
226 227 1.474077 CAACCATTTACTGAGCAGGGC 59.526 52.381 2.20 0.00 0.00 5.19
227 228 0.034089 ACCATTTACTGAGCAGGGCC 60.034 55.000 0.00 0.00 0.00 5.80
228 229 0.257039 CCATTTACTGAGCAGGGCCT 59.743 55.000 0.00 0.00 0.00 5.19
229 230 1.673168 CATTTACTGAGCAGGGCCTC 58.327 55.000 0.95 0.00 0.00 4.70
230 231 1.065199 CATTTACTGAGCAGGGCCTCA 60.065 52.381 0.95 0.00 39.42 3.86
231 232 1.289160 TTTACTGAGCAGGGCCTCAT 58.711 50.000 0.95 0.00 40.77 2.90
232 233 1.289160 TTACTGAGCAGGGCCTCATT 58.711 50.000 0.95 0.00 40.77 2.57
233 234 0.833287 TACTGAGCAGGGCCTCATTC 59.167 55.000 0.95 1.85 40.77 2.67
234 235 0.913451 ACTGAGCAGGGCCTCATTCT 60.913 55.000 0.95 0.00 40.77 2.40
235 236 0.255318 CTGAGCAGGGCCTCATTCTT 59.745 55.000 0.95 0.00 40.77 2.52
236 237 0.034767 TGAGCAGGGCCTCATTCTTG 60.035 55.000 0.95 0.00 36.96 3.02
237 238 0.254178 GAGCAGGGCCTCATTCTTGA 59.746 55.000 0.95 0.00 0.00 3.02
238 239 0.034670 AGCAGGGCCTCATTCTTGAC 60.035 55.000 0.95 0.00 0.00 3.18
239 240 1.034292 GCAGGGCCTCATTCTTGACC 61.034 60.000 0.95 0.00 0.00 4.02
240 241 0.622665 CAGGGCCTCATTCTTGACCT 59.377 55.000 0.95 0.00 0.00 3.85
241 242 0.622665 AGGGCCTCATTCTTGACCTG 59.377 55.000 0.00 0.00 27.70 4.00
242 243 0.329596 GGGCCTCATTCTTGACCTGT 59.670 55.000 0.84 0.00 0.00 4.00
243 244 1.559682 GGGCCTCATTCTTGACCTGTA 59.440 52.381 0.84 0.00 0.00 2.74
244 245 2.420687 GGGCCTCATTCTTGACCTGTAG 60.421 54.545 0.84 0.00 0.00 2.74
245 246 2.420687 GGCCTCATTCTTGACCTGTAGG 60.421 54.545 0.00 0.00 42.17 3.18
260 261 5.824904 CCTGTAGGTCATGAATTTCAAGG 57.175 43.478 2.68 0.00 0.00 3.61
261 262 4.096984 CCTGTAGGTCATGAATTTCAAGGC 59.903 45.833 2.68 0.01 0.00 4.35
262 263 3.689161 TGTAGGTCATGAATTTCAAGGCG 59.311 43.478 2.68 0.00 0.00 5.52
263 264 2.094675 AGGTCATGAATTTCAAGGCGG 58.905 47.619 2.68 0.00 0.00 6.13
264 265 1.469767 GGTCATGAATTTCAAGGCGGC 60.470 52.381 0.00 0.00 0.00 6.53
265 266 0.817013 TCATGAATTTCAAGGCGGCC 59.183 50.000 12.11 12.11 0.00 6.13
266 267 0.819582 CATGAATTTCAAGGCGGCCT 59.180 50.000 17.69 17.69 33.87 5.19
267 268 1.205417 CATGAATTTCAAGGCGGCCTT 59.795 47.619 28.12 28.12 45.88 4.35
274 275 2.116125 AAGGCGGCCTTGCTCTTT 59.884 55.556 32.29 7.45 42.96 2.52
275 276 1.531602 AAGGCGGCCTTGCTCTTTT 60.532 52.632 32.29 6.62 42.96 2.27
276 277 1.809567 AAGGCGGCCTTGCTCTTTTG 61.810 55.000 32.29 0.00 42.96 2.44
277 278 2.259511 GCGGCCTTGCTCTTTTGG 59.740 61.111 0.00 0.00 0.00 3.28
278 279 2.259511 CGGCCTTGCTCTTTTGGC 59.740 61.111 0.00 0.00 44.22 4.52
280 281 3.783165 GCCTTGCTCTTTTGGCCT 58.217 55.556 3.32 0.00 39.49 5.19
281 282 2.961424 GCCTTGCTCTTTTGGCCTA 58.039 52.632 3.32 0.00 39.49 3.93
282 283 0.528017 GCCTTGCTCTTTTGGCCTAC 59.472 55.000 3.32 0.00 39.49 3.18
283 284 1.909700 CCTTGCTCTTTTGGCCTACA 58.090 50.000 3.32 0.00 0.00 2.74
284 285 2.238521 CCTTGCTCTTTTGGCCTACAA 58.761 47.619 3.32 0.00 37.28 2.41
285 286 2.627699 CCTTGCTCTTTTGGCCTACAAA 59.372 45.455 3.32 0.00 46.82 2.83
294 295 3.359695 TTGGCCTACAAACCATACTCC 57.640 47.619 3.32 0.00 35.79 3.85
295 296 2.270858 TGGCCTACAAACCATACTCCA 58.729 47.619 3.32 0.00 0.00 3.86
296 297 2.849943 TGGCCTACAAACCATACTCCAT 59.150 45.455 3.32 0.00 0.00 3.41
297 298 3.268334 TGGCCTACAAACCATACTCCATT 59.732 43.478 3.32 0.00 0.00 3.16
298 299 4.264172 TGGCCTACAAACCATACTCCATTT 60.264 41.667 3.32 0.00 0.00 2.32
299 300 4.097892 GGCCTACAAACCATACTCCATTTG 59.902 45.833 0.00 0.00 37.91 2.32
300 301 4.097892 GCCTACAAACCATACTCCATTTGG 59.902 45.833 0.00 0.00 36.55 3.28
301 302 4.097892 CCTACAAACCATACTCCATTTGGC 59.902 45.833 0.00 0.00 36.55 4.52
302 303 2.831526 ACAAACCATACTCCATTTGGCC 59.168 45.455 0.00 0.00 36.55 5.36
303 304 2.830923 CAAACCATACTCCATTTGGCCA 59.169 45.455 0.00 0.00 33.66 5.36
304 305 2.917713 ACCATACTCCATTTGGCCAA 57.082 45.000 16.05 16.05 33.66 4.52
305 306 2.456577 ACCATACTCCATTTGGCCAAC 58.543 47.619 20.35 0.00 33.66 3.77
306 307 1.756538 CCATACTCCATTTGGCCAACC 59.243 52.381 20.35 0.00 34.44 3.77
307 308 1.405105 CATACTCCATTTGGCCAACCG 59.595 52.381 20.35 12.20 39.70 4.44
308 309 0.693622 TACTCCATTTGGCCAACCGA 59.306 50.000 20.35 12.67 39.70 4.69
309 310 0.039618 ACTCCATTTGGCCAACCGAT 59.960 50.000 20.35 6.48 39.70 4.18
310 311 1.283613 ACTCCATTTGGCCAACCGATA 59.716 47.619 20.35 2.78 39.70 2.92
311 312 1.949525 CTCCATTTGGCCAACCGATAG 59.050 52.381 20.35 8.60 39.70 2.08
312 313 1.283613 TCCATTTGGCCAACCGATAGT 59.716 47.619 20.35 0.00 39.70 2.12
313 314 2.099405 CCATTTGGCCAACCGATAGTT 58.901 47.619 20.35 0.00 40.16 2.24
314 315 2.495669 CCATTTGGCCAACCGATAGTTT 59.504 45.455 20.35 0.00 36.18 2.66
315 316 3.056179 CCATTTGGCCAACCGATAGTTTT 60.056 43.478 20.35 0.00 36.18 2.43
316 317 4.562552 CCATTTGGCCAACCGATAGTTTTT 60.563 41.667 20.35 0.00 36.18 1.94
317 318 3.926821 TTGGCCAACCGATAGTTTTTC 57.073 42.857 16.05 0.00 36.18 2.29
318 319 3.149005 TGGCCAACCGATAGTTTTTCT 57.851 42.857 0.61 0.00 36.18 2.52
319 320 3.492337 TGGCCAACCGATAGTTTTTCTT 58.508 40.909 0.61 0.00 36.18 2.52
320 321 3.892588 TGGCCAACCGATAGTTTTTCTTT 59.107 39.130 0.61 0.00 36.18 2.52
321 322 4.342665 TGGCCAACCGATAGTTTTTCTTTT 59.657 37.500 0.61 0.00 36.18 2.27
322 323 4.921515 GGCCAACCGATAGTTTTTCTTTTC 59.078 41.667 0.00 0.00 36.18 2.29
323 324 5.278808 GGCCAACCGATAGTTTTTCTTTTCT 60.279 40.000 0.00 0.00 36.18 2.52
324 325 5.856986 GCCAACCGATAGTTTTTCTTTTCTC 59.143 40.000 0.00 0.00 36.18 2.87
325 326 6.379386 CCAACCGATAGTTTTTCTTTTCTCC 58.621 40.000 0.00 0.00 36.18 3.71
326 327 6.016610 CCAACCGATAGTTTTTCTTTTCTCCA 60.017 38.462 0.00 0.00 36.18 3.86
327 328 7.309194 CCAACCGATAGTTTTTCTTTTCTCCAT 60.309 37.037 0.00 0.00 36.18 3.41
328 329 7.379098 ACCGATAGTTTTTCTTTTCTCCATC 57.621 36.000 0.00 0.00 0.00 3.51
329 330 6.374613 ACCGATAGTTTTTCTTTTCTCCATCC 59.625 38.462 0.00 0.00 0.00 3.51
330 331 6.183360 CCGATAGTTTTTCTTTTCTCCATCCC 60.183 42.308 0.00 0.00 0.00 3.85
331 332 6.183360 CGATAGTTTTTCTTTTCTCCATCCCC 60.183 42.308 0.00 0.00 0.00 4.81
332 333 5.079998 AGTTTTTCTTTTCTCCATCCCCT 57.920 39.130 0.00 0.00 0.00 4.79
333 334 5.467738 AGTTTTTCTTTTCTCCATCCCCTT 58.532 37.500 0.00 0.00 0.00 3.95
334 335 5.305386 AGTTTTTCTTTTCTCCATCCCCTTG 59.695 40.000 0.00 0.00 0.00 3.61
335 336 2.514458 TCTTTTCTCCATCCCCTTGC 57.486 50.000 0.00 0.00 0.00 4.01
336 337 1.995542 TCTTTTCTCCATCCCCTTGCT 59.004 47.619 0.00 0.00 0.00 3.91
337 338 3.189606 TCTTTTCTCCATCCCCTTGCTA 58.810 45.455 0.00 0.00 0.00 3.49
338 339 3.591527 TCTTTTCTCCATCCCCTTGCTAA 59.408 43.478 0.00 0.00 0.00 3.09
339 340 4.044065 TCTTTTCTCCATCCCCTTGCTAAA 59.956 41.667 0.00 0.00 0.00 1.85
340 341 4.396357 TTTCTCCATCCCCTTGCTAAAA 57.604 40.909 0.00 0.00 0.00 1.52
341 342 4.396357 TTCTCCATCCCCTTGCTAAAAA 57.604 40.909 0.00 0.00 0.00 1.94
378 379 1.090052 CGGGTCGAATCTTGGAAGGC 61.090 60.000 0.00 0.00 0.00 4.35
393 394 2.096496 GGAAGGCTCAATCGATTGTGTG 59.904 50.000 31.49 23.60 38.84 3.82
450 451 8.577296 GCATTAGACAGTCAGTATTCCTGTATA 58.423 37.037 2.66 0.00 42.19 1.47
749 765 2.534042 TGTCCCTCTTCCTCTCGAAT 57.466 50.000 0.00 0.00 0.00 3.34
790 806 5.661056 TCACTATACTCCAACTCAACCTG 57.339 43.478 0.00 0.00 0.00 4.00
795 811 1.348036 ACTCCAACTCAACCTGGCTAC 59.652 52.381 0.00 0.00 32.33 3.58
799 815 1.537202 CAACTCAACCTGGCTACTTGC 59.463 52.381 0.00 0.00 41.94 4.01
800 816 1.059913 ACTCAACCTGGCTACTTGCT 58.940 50.000 0.00 0.00 42.39 3.91
818 834 7.365840 ACTTGCTAGAAAATAACACTGTAGC 57.634 36.000 1.04 0.00 0.00 3.58
892 908 0.877071 CCAGCCTAAACTGCACACTG 59.123 55.000 0.00 0.00 36.29 3.66
1046 1066 2.125753 GAGGCTCTCACCTGTGCG 60.126 66.667 7.40 0.00 41.32 5.34
1139 1159 4.865761 GCGTACGCCAGCGATCCA 62.866 66.667 29.51 0.00 42.83 3.41
1241 1261 2.034879 CACCTTCTGCCAACGCGAT 61.035 57.895 15.93 0.00 38.08 4.58
1247 1267 3.381169 CTGCCAACGCGATTTCCGG 62.381 63.158 15.93 0.00 38.08 5.14
1514 1537 2.156917 CAAGAAGCTGCAGATCACCAA 58.843 47.619 20.43 0.00 0.00 3.67
1518 1541 3.054875 AGAAGCTGCAGATCACCAATACA 60.055 43.478 20.43 0.00 0.00 2.29
1603 1626 1.280746 CGCTTGCTTCGCCATATGG 59.719 57.895 18.07 18.07 38.53 2.74
1682 1705 7.231115 CCTAGTAGTTCTAGTCTTAATCCCCAC 59.769 44.444 3.44 0.00 43.23 4.61
1718 1741 7.169158 AGAAGTAGATCTGTTCCTCAAGAAG 57.831 40.000 5.18 0.00 34.29 2.85
1852 1876 2.407090 GCTTGATGCAACTTTGGTTCC 58.593 47.619 0.00 0.00 42.31 3.62
1871 1895 4.280436 TCCAGCTCCTCGTTAAATTTGA 57.720 40.909 0.00 0.00 0.00 2.69
1888 1912 0.108329 TGATTCCGTCTCCTTTCGCC 60.108 55.000 0.00 0.00 0.00 5.54
1945 1985 6.638468 GCTTTGTTCATTGTTTCTCTTCGATT 59.362 34.615 0.00 0.00 0.00 3.34
2009 2049 9.078990 TGATGTATATATCTCCTTCGTTTCAGT 57.921 33.333 10.42 0.00 0.00 3.41
2098 2138 8.771920 AGTCTTGTATCATGTTGAATCGTAAA 57.228 30.769 0.00 0.00 0.00 2.01
2099 2139 9.214957 AGTCTTGTATCATGTTGAATCGTAAAA 57.785 29.630 0.00 0.00 0.00 1.52
2247 2331 9.591792 TTAGAACTGATTGTACATCATCAAGAG 57.408 33.333 10.63 3.66 0.00 2.85
2285 2369 1.930251 TCCTCACCACTTCTCTCCAG 58.070 55.000 0.00 0.00 0.00 3.86
2294 2378 0.179124 CTTCTCTCCAGTAGCACCGC 60.179 60.000 0.00 0.00 0.00 5.68
2337 2421 4.083696 GCCTTTGCCAAATGAAACAATGAG 60.084 41.667 0.00 0.00 0.00 2.90
2381 2465 9.429359 CCAACTCTATAGTGATTTATTGCCTAG 57.571 37.037 8.76 0.00 35.62 3.02
2407 2491 8.889717 GTTCGAATATAACCCAAATCAAAGAGA 58.110 33.333 0.00 0.00 0.00 3.10
2457 2541 3.161866 TGCCCCAAGAACTTAAATGACC 58.838 45.455 0.00 0.00 0.00 4.02
2506 2590 7.850027 GGTAAATACCTCAAATGGAGCACCAG 61.850 46.154 9.30 0.00 45.14 4.00
2523 2607 6.054035 GCACCAGCTTTGAGATACTAAATC 57.946 41.667 0.00 0.00 37.91 2.17
2532 2616 9.377312 GCTTTGAGATACTAAATCTCTGAAGTT 57.623 33.333 20.19 0.00 43.62 2.66
2543 2627 7.412853 AAATCTCTGAAGTTACTACTCCCTC 57.587 40.000 0.00 0.00 31.99 4.30
2544 2628 4.857679 TCTCTGAAGTTACTACTCCCTCC 58.142 47.826 0.00 0.00 31.99 4.30
2548 2632 4.154942 TGAAGTTACTACTCCCTCCGTTT 58.845 43.478 0.00 0.00 31.99 3.60
2617 2701 7.330946 CGGACTAAAATGAGTGAATCTACACAA 59.669 37.037 0.00 0.00 42.45 3.33
2618 2702 9.167311 GGACTAAAATGAGTGAATCTACACAAT 57.833 33.333 0.00 0.00 42.45 2.71
2684 2768 2.297698 TATATTTCGGAGCGGAGGGA 57.702 50.000 0.00 0.00 0.00 4.20
2686 2770 1.745320 TATTTCGGAGCGGAGGGAGC 61.745 60.000 0.00 0.00 0.00 4.70
2736 2820 5.562298 ACTCAATAGTTGTACCCTTGTGT 57.438 39.130 0.00 0.00 29.00 3.72
2737 2821 5.305585 ACTCAATAGTTGTACCCTTGTGTG 58.694 41.667 0.00 0.00 29.00 3.82
2752 2836 4.741781 GTGTGTGCGCCGACATGC 62.742 66.667 4.18 0.00 0.00 4.06
2795 2879 7.262772 AGTCATTTCATAAATGCCATTGTCAG 58.737 34.615 7.37 0.00 46.09 3.51
2859 2943 1.408969 TCCACCAACTTGGCCTTTTC 58.591 50.000 7.81 0.00 42.67 2.29
2875 2959 5.154222 GCCTTTTCTTTTGTAGTGATTCCG 58.846 41.667 0.00 0.00 0.00 4.30
2880 2964 5.723672 TCTTTTGTAGTGATTCCGAGTCT 57.276 39.130 0.00 0.00 0.00 3.24
2883 2967 6.990349 TCTTTTGTAGTGATTCCGAGTCTTTT 59.010 34.615 0.00 0.00 0.00 2.27
2884 2968 7.497909 TCTTTTGTAGTGATTCCGAGTCTTTTT 59.502 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.661463 TTCTGGGAAGACATCTGGCT 58.339 50.000 0.00 0.00 32.33 4.75
1 2 2.087646 GTTTCTGGGAAGACATCTGGC 58.912 52.381 0.00 0.00 0.00 4.85
2 3 2.028112 TCGTTTCTGGGAAGACATCTGG 60.028 50.000 0.00 0.00 0.00 3.86
3 4 3.319137 TCGTTTCTGGGAAGACATCTG 57.681 47.619 0.00 0.00 0.00 2.90
4 5 4.223923 AGATTCGTTTCTGGGAAGACATCT 59.776 41.667 0.00 0.00 0.00 2.90
5 6 4.508662 AGATTCGTTTCTGGGAAGACATC 58.491 43.478 0.00 0.00 0.00 3.06
6 7 4.508662 GAGATTCGTTTCTGGGAAGACAT 58.491 43.478 0.00 0.00 0.00 3.06
7 8 3.306780 GGAGATTCGTTTCTGGGAAGACA 60.307 47.826 0.00 0.00 0.00 3.41
8 9 3.263261 GGAGATTCGTTTCTGGGAAGAC 58.737 50.000 0.00 0.00 0.00 3.01
9 10 2.094182 CGGAGATTCGTTTCTGGGAAGA 60.094 50.000 0.00 0.00 0.00 2.87
10 11 2.094182 TCGGAGATTCGTTTCTGGGAAG 60.094 50.000 0.00 0.00 0.00 3.46
11 12 1.897133 TCGGAGATTCGTTTCTGGGAA 59.103 47.619 0.00 0.00 0.00 3.97
12 13 1.203994 GTCGGAGATTCGTTTCTGGGA 59.796 52.381 0.00 0.00 40.67 4.37
13 14 1.641577 GTCGGAGATTCGTTTCTGGG 58.358 55.000 0.00 0.00 40.67 4.45
14 15 1.641577 GGTCGGAGATTCGTTTCTGG 58.358 55.000 0.00 0.00 40.67 3.86
15 16 1.641577 GGGTCGGAGATTCGTTTCTG 58.358 55.000 0.00 0.00 40.67 3.02
16 17 0.172803 CGGGTCGGAGATTCGTTTCT 59.827 55.000 0.00 0.00 40.67 2.52
17 18 0.108945 ACGGGTCGGAGATTCGTTTC 60.109 55.000 0.00 0.00 42.96 2.78
18 19 0.108945 GACGGGTCGGAGATTCGTTT 60.109 55.000 0.00 0.00 44.72 3.60
19 20 0.964358 AGACGGGTCGGAGATTCGTT 60.964 55.000 0.00 0.00 44.72 3.85
20 21 0.964358 AAGACGGGTCGGAGATTCGT 60.964 55.000 0.00 0.00 46.54 3.85
21 22 0.172803 AAAGACGGGTCGGAGATTCG 59.827 55.000 0.00 0.00 40.67 3.34
22 23 2.381725 AAAAGACGGGTCGGAGATTC 57.618 50.000 0.00 0.00 40.67 2.52
23 24 3.490419 CGATAAAAGACGGGTCGGAGATT 60.490 47.826 0.00 0.00 40.67 2.40
24 25 2.034305 CGATAAAAGACGGGTCGGAGAT 59.966 50.000 0.00 0.00 40.67 2.75
25 26 1.402968 CGATAAAAGACGGGTCGGAGA 59.597 52.381 0.00 0.00 34.09 3.71
26 27 1.836383 CGATAAAAGACGGGTCGGAG 58.164 55.000 0.00 0.00 34.09 4.63
27 28 0.179129 GCGATAAAAGACGGGTCGGA 60.179 55.000 0.00 0.00 33.26 4.55
28 29 1.477030 CGCGATAAAAGACGGGTCGG 61.477 60.000 0.00 0.00 37.60 4.79
29 30 0.523968 TCGCGATAAAAGACGGGTCG 60.524 55.000 3.71 0.00 41.72 4.79
30 31 1.632422 TTCGCGATAAAAGACGGGTC 58.368 50.000 10.88 0.00 41.72 4.46
31 32 1.997606 CTTTCGCGATAAAAGACGGGT 59.002 47.619 10.88 0.00 41.72 5.28
32 33 2.264813 TCTTTCGCGATAAAAGACGGG 58.735 47.619 15.80 0.00 37.72 5.28
36 37 3.322211 TGGGTCTTTCGCGATAAAAGA 57.678 42.857 15.80 15.80 39.72 2.52
37 38 4.083484 ACTTTGGGTCTTTCGCGATAAAAG 60.083 41.667 10.88 11.49 35.49 2.27
38 39 3.816523 ACTTTGGGTCTTTCGCGATAAAA 59.183 39.130 10.88 0.00 0.00 1.52
39 40 3.187637 CACTTTGGGTCTTTCGCGATAAA 59.812 43.478 10.88 0.18 0.00 1.40
40 41 2.739913 CACTTTGGGTCTTTCGCGATAA 59.260 45.455 10.88 6.60 0.00 1.75
41 42 2.028839 TCACTTTGGGTCTTTCGCGATA 60.029 45.455 10.88 3.77 0.00 2.92
42 43 1.156736 CACTTTGGGTCTTTCGCGAT 58.843 50.000 10.88 0.00 0.00 4.58
43 44 0.105224 TCACTTTGGGTCTTTCGCGA 59.895 50.000 3.71 3.71 0.00 5.87
44 45 0.941542 TTCACTTTGGGTCTTTCGCG 59.058 50.000 0.00 0.00 0.00 5.87
45 46 2.616842 TCTTTCACTTTGGGTCTTTCGC 59.383 45.455 0.00 0.00 0.00 4.70
46 47 4.127171 TCTCTTTCACTTTGGGTCTTTCG 58.873 43.478 0.00 0.00 0.00 3.46
47 48 5.532779 ACATCTCTTTCACTTTGGGTCTTTC 59.467 40.000 0.00 0.00 0.00 2.62
48 49 5.449553 ACATCTCTTTCACTTTGGGTCTTT 58.550 37.500 0.00 0.00 0.00 2.52
49 50 5.053978 ACATCTCTTTCACTTTGGGTCTT 57.946 39.130 0.00 0.00 0.00 3.01
50 51 4.713792 ACATCTCTTTCACTTTGGGTCT 57.286 40.909 0.00 0.00 0.00 3.85
51 52 5.532779 AGAAACATCTCTTTCACTTTGGGTC 59.467 40.000 0.00 0.00 33.26 4.46
52 53 5.449553 AGAAACATCTCTTTCACTTTGGGT 58.550 37.500 0.00 0.00 33.26 4.51
53 54 6.396829 AAGAAACATCTCTTTCACTTTGGG 57.603 37.500 0.00 0.00 31.39 4.12
54 55 6.199719 GCAAAGAAACATCTCTTTCACTTTGG 59.800 38.462 2.54 0.00 42.47 3.28
55 56 6.199719 GGCAAAGAAACATCTCTTTCACTTTG 59.800 38.462 0.00 0.00 42.47 2.77
56 57 6.127366 TGGCAAAGAAACATCTCTTTCACTTT 60.127 34.615 0.00 0.00 42.47 2.66
57 58 5.360714 TGGCAAAGAAACATCTCTTTCACTT 59.639 36.000 0.00 0.00 42.47 3.16
58 59 4.889409 TGGCAAAGAAACATCTCTTTCACT 59.111 37.500 0.00 0.00 42.47 3.41
59 60 4.978580 GTGGCAAAGAAACATCTCTTTCAC 59.021 41.667 0.00 0.36 42.47 3.18
60 61 4.037923 GGTGGCAAAGAAACATCTCTTTCA 59.962 41.667 0.00 0.00 42.47 2.69
61 62 4.037923 TGGTGGCAAAGAAACATCTCTTTC 59.962 41.667 0.00 0.00 42.47 2.62
62 63 3.960102 TGGTGGCAAAGAAACATCTCTTT 59.040 39.130 0.00 0.00 44.65 2.52
63 64 3.565307 TGGTGGCAAAGAAACATCTCTT 58.435 40.909 0.00 0.00 37.24 2.85
64 65 3.228188 TGGTGGCAAAGAAACATCTCT 57.772 42.857 0.00 0.00 0.00 3.10
65 66 4.525912 AATGGTGGCAAAGAAACATCTC 57.474 40.909 0.00 0.00 0.00 2.75
66 67 4.463891 CCTAATGGTGGCAAAGAAACATCT 59.536 41.667 0.00 0.00 0.00 2.90
67 68 4.747810 CCTAATGGTGGCAAAGAAACATC 58.252 43.478 0.00 0.00 0.00 3.06
68 69 4.806640 CCTAATGGTGGCAAAGAAACAT 57.193 40.909 0.00 0.00 0.00 2.71
79 80 2.123726 GGGCTGGCCTAATGGTGG 60.124 66.667 13.80 0.00 36.10 4.61
80 81 1.454479 CTGGGCTGGCCTAATGGTG 60.454 63.158 21.72 0.00 36.10 4.17
81 82 1.214305 TTCTGGGCTGGCCTAATGGT 61.214 55.000 21.72 0.00 36.10 3.55
82 83 0.466922 CTTCTGGGCTGGCCTAATGG 60.467 60.000 21.72 6.61 36.10 3.16
83 84 0.257039 ACTTCTGGGCTGGCCTAATG 59.743 55.000 21.72 12.89 36.10 1.90
84 85 0.257039 CACTTCTGGGCTGGCCTAAT 59.743 55.000 21.72 0.00 36.10 1.73
85 86 1.685224 CACTTCTGGGCTGGCCTAA 59.315 57.895 21.72 13.98 36.10 2.69
86 87 2.971598 GCACTTCTGGGCTGGCCTA 61.972 63.158 21.72 6.52 36.10 3.93
87 88 4.357279 GCACTTCTGGGCTGGCCT 62.357 66.667 21.72 0.00 36.10 5.19
89 90 4.704833 TCGCACTTCTGGGCTGGC 62.705 66.667 0.00 0.00 0.00 4.85
90 91 2.435586 CTCGCACTTCTGGGCTGG 60.436 66.667 0.00 0.00 0.00 4.85
91 92 1.739562 GACTCGCACTTCTGGGCTG 60.740 63.158 0.00 0.00 0.00 4.85
92 93 2.210013 TGACTCGCACTTCTGGGCT 61.210 57.895 0.00 0.00 0.00 5.19
93 94 2.029844 GTGACTCGCACTTCTGGGC 61.030 63.158 0.00 0.00 44.27 5.36
94 95 1.374758 GGTGACTCGCACTTCTGGG 60.375 63.158 0.00 0.00 46.86 4.45
95 96 0.668706 CTGGTGACTCGCACTTCTGG 60.669 60.000 0.00 0.00 46.86 3.86
96 97 0.668706 CCTGGTGACTCGCACTTCTG 60.669 60.000 0.00 0.00 46.86 3.02
97 98 1.115930 ACCTGGTGACTCGCACTTCT 61.116 55.000 0.00 0.00 46.86 2.85
98 99 0.249911 AACCTGGTGACTCGCACTTC 60.250 55.000 0.00 0.00 46.86 3.01
99 100 0.180406 AAACCTGGTGACTCGCACTT 59.820 50.000 0.00 0.00 46.86 3.16
100 101 0.249911 GAAACCTGGTGACTCGCACT 60.250 55.000 0.00 0.00 46.86 4.40
101 102 1.228657 GGAAACCTGGTGACTCGCAC 61.229 60.000 0.00 0.00 46.98 5.34
102 103 1.070786 GGAAACCTGGTGACTCGCA 59.929 57.895 0.00 0.00 0.00 5.10
103 104 0.534203 TTGGAAACCTGGTGACTCGC 60.534 55.000 0.00 0.00 0.00 5.03
104 105 2.185004 ATTGGAAACCTGGTGACTCG 57.815 50.000 0.00 0.00 0.00 4.18
105 106 3.378427 GCATATTGGAAACCTGGTGACTC 59.622 47.826 0.00 0.00 0.00 3.36
106 107 3.356290 GCATATTGGAAACCTGGTGACT 58.644 45.455 0.00 0.00 0.00 3.41
107 108 2.427095 GGCATATTGGAAACCTGGTGAC 59.573 50.000 0.00 0.00 0.00 3.67
108 109 2.622977 GGGCATATTGGAAACCTGGTGA 60.623 50.000 0.00 0.00 0.00 4.02
109 110 1.756538 GGGCATATTGGAAACCTGGTG 59.243 52.381 0.00 0.00 0.00 4.17
110 111 1.684869 CGGGCATATTGGAAACCTGGT 60.685 52.381 0.00 0.00 0.00 4.00
111 112 1.032014 CGGGCATATTGGAAACCTGG 58.968 55.000 0.00 0.00 0.00 4.45
112 113 1.032014 CCGGGCATATTGGAAACCTG 58.968 55.000 0.00 0.00 0.00 4.00
113 114 0.106217 CCCGGGCATATTGGAAACCT 60.106 55.000 8.08 0.00 0.00 3.50
114 115 0.106419 TCCCGGGCATATTGGAAACC 60.106 55.000 18.49 0.00 0.00 3.27
115 116 1.029681 GTCCCGGGCATATTGGAAAC 58.970 55.000 18.49 0.00 0.00 2.78
116 117 0.626382 TGTCCCGGGCATATTGGAAA 59.374 50.000 18.49 0.00 0.00 3.13
117 118 0.106918 GTGTCCCGGGCATATTGGAA 60.107 55.000 18.49 0.00 0.00 3.53
118 119 1.529796 GTGTCCCGGGCATATTGGA 59.470 57.895 18.49 0.00 0.00 3.53
119 120 1.528309 GGTGTCCCGGGCATATTGG 60.528 63.158 18.49 0.00 0.00 3.16
120 121 4.157607 GGTGTCCCGGGCATATTG 57.842 61.111 18.49 0.00 0.00 1.90
130 131 2.265904 GGTCAAAAGGCGGTGTCCC 61.266 63.158 0.00 0.00 0.00 4.46
131 132 0.035739 TAGGTCAAAAGGCGGTGTCC 59.964 55.000 0.00 0.00 0.00 4.02
132 133 1.001633 TCTAGGTCAAAAGGCGGTGTC 59.998 52.381 0.00 0.00 0.00 3.67
133 134 1.053424 TCTAGGTCAAAAGGCGGTGT 58.947 50.000 0.00 0.00 0.00 4.16
134 135 2.403252 ATCTAGGTCAAAAGGCGGTG 57.597 50.000 0.00 0.00 0.00 4.94
135 136 3.105283 AGTATCTAGGTCAAAAGGCGGT 58.895 45.455 0.00 0.00 0.00 5.68
136 137 3.821421 AGTATCTAGGTCAAAAGGCGG 57.179 47.619 0.00 0.00 0.00 6.13
137 138 4.504858 ACAAGTATCTAGGTCAAAAGGCG 58.495 43.478 0.00 0.00 0.00 5.52
138 139 6.402226 CGAAACAAGTATCTAGGTCAAAAGGC 60.402 42.308 0.00 0.00 0.00 4.35
139 140 6.402226 GCGAAACAAGTATCTAGGTCAAAAGG 60.402 42.308 0.00 0.00 0.00 3.11
140 141 6.147164 TGCGAAACAAGTATCTAGGTCAAAAG 59.853 38.462 0.00 0.00 0.00 2.27
141 142 5.992829 TGCGAAACAAGTATCTAGGTCAAAA 59.007 36.000 0.00 0.00 0.00 2.44
142 143 5.543714 TGCGAAACAAGTATCTAGGTCAAA 58.456 37.500 0.00 0.00 0.00 2.69
143 144 5.142061 TGCGAAACAAGTATCTAGGTCAA 57.858 39.130 0.00 0.00 0.00 3.18
144 145 4.794278 TGCGAAACAAGTATCTAGGTCA 57.206 40.909 0.00 0.00 0.00 4.02
145 146 4.927425 TGTTGCGAAACAAGTATCTAGGTC 59.073 41.667 6.47 0.00 39.50 3.85
146 147 4.890088 TGTTGCGAAACAAGTATCTAGGT 58.110 39.130 6.47 0.00 39.50 3.08
147 148 5.580691 TCATGTTGCGAAACAAGTATCTAGG 59.419 40.000 14.20 0.00 39.50 3.02
148 149 6.647212 TCATGTTGCGAAACAAGTATCTAG 57.353 37.500 14.20 0.00 39.50 2.43
149 150 7.609760 AATCATGTTGCGAAACAAGTATCTA 57.390 32.000 14.20 0.00 39.50 1.98
150 151 6.500684 AATCATGTTGCGAAACAAGTATCT 57.499 33.333 14.20 0.00 39.50 1.98
151 152 6.452872 GCAAATCATGTTGCGAAACAAGTATC 60.453 38.462 14.20 0.00 44.05 2.24
152 153 5.345741 GCAAATCATGTTGCGAAACAAGTAT 59.654 36.000 14.20 4.35 44.05 2.12
153 154 4.679197 GCAAATCATGTTGCGAAACAAGTA 59.321 37.500 14.20 1.88 44.05 2.24
154 155 3.490526 GCAAATCATGTTGCGAAACAAGT 59.509 39.130 14.20 0.00 44.05 3.16
155 156 4.043761 GCAAATCATGTTGCGAAACAAG 57.956 40.909 14.20 9.38 44.05 3.16
164 165 3.464907 TGGTGTTTGGCAAATCATGTTG 58.535 40.909 16.74 0.00 0.00 3.33
165 166 3.834489 TGGTGTTTGGCAAATCATGTT 57.166 38.095 16.74 0.00 0.00 2.71
166 167 3.306919 GGATGGTGTTTGGCAAATCATGT 60.307 43.478 16.74 3.02 0.00 3.21
167 168 3.055675 AGGATGGTGTTTGGCAAATCATG 60.056 43.478 16.74 0.00 0.00 3.07
168 169 3.175594 AGGATGGTGTTTGGCAAATCAT 58.824 40.909 16.74 18.21 0.00 2.45
169 170 2.562298 GAGGATGGTGTTTGGCAAATCA 59.438 45.455 16.74 14.58 0.00 2.57
170 171 2.562298 TGAGGATGGTGTTTGGCAAATC 59.438 45.455 16.74 12.02 0.00 2.17
171 172 2.564062 CTGAGGATGGTGTTTGGCAAAT 59.436 45.455 16.74 0.00 0.00 2.32
172 173 1.962807 CTGAGGATGGTGTTTGGCAAA 59.037 47.619 8.93 8.93 0.00 3.68
173 174 1.133513 ACTGAGGATGGTGTTTGGCAA 60.134 47.619 0.00 0.00 0.00 4.52
174 175 0.478072 ACTGAGGATGGTGTTTGGCA 59.522 50.000 0.00 0.00 0.00 4.92
175 176 2.489938 TACTGAGGATGGTGTTTGGC 57.510 50.000 0.00 0.00 0.00 4.52
176 177 4.286297 TCTTACTGAGGATGGTGTTTGG 57.714 45.455 0.00 0.00 0.00 3.28
177 178 5.308825 ACTTCTTACTGAGGATGGTGTTTG 58.691 41.667 0.00 0.00 0.00 2.93
178 179 5.568620 ACTTCTTACTGAGGATGGTGTTT 57.431 39.130 0.00 0.00 0.00 2.83
179 180 5.568620 AACTTCTTACTGAGGATGGTGTT 57.431 39.130 0.00 0.00 0.00 3.32
180 181 5.071788 TCAAACTTCTTACTGAGGATGGTGT 59.928 40.000 0.00 0.00 0.00 4.16
181 182 5.551233 TCAAACTTCTTACTGAGGATGGTG 58.449 41.667 0.00 0.00 0.00 4.17
182 183 5.825593 TCAAACTTCTTACTGAGGATGGT 57.174 39.130 0.00 0.00 0.00 3.55
183 184 5.997746 TGTTCAAACTTCTTACTGAGGATGG 59.002 40.000 0.00 0.00 0.00 3.51
184 185 7.355778 GTTGTTCAAACTTCTTACTGAGGATG 58.644 38.462 0.00 0.00 0.00 3.51
185 186 6.486993 GGTTGTTCAAACTTCTTACTGAGGAT 59.513 38.462 0.00 0.00 0.00 3.24
186 187 5.820947 GGTTGTTCAAACTTCTTACTGAGGA 59.179 40.000 0.00 0.00 0.00 3.71
187 188 5.588648 TGGTTGTTCAAACTTCTTACTGAGG 59.411 40.000 2.32 0.00 0.00 3.86
188 189 6.677781 TGGTTGTTCAAACTTCTTACTGAG 57.322 37.500 2.32 0.00 0.00 3.35
189 190 7.639113 AATGGTTGTTCAAACTTCTTACTGA 57.361 32.000 2.32 0.00 0.00 3.41
190 191 9.233232 GTAAATGGTTGTTCAAACTTCTTACTG 57.767 33.333 2.32 0.00 0.00 2.74
191 192 9.185680 AGTAAATGGTTGTTCAAACTTCTTACT 57.814 29.630 12.23 12.23 0.00 2.24
192 193 9.233232 CAGTAAATGGTTGTTCAAACTTCTTAC 57.767 33.333 2.32 6.91 0.00 2.34
193 194 9.179909 TCAGTAAATGGTTGTTCAAACTTCTTA 57.820 29.630 2.32 0.00 0.00 2.10
194 195 8.062065 TCAGTAAATGGTTGTTCAAACTTCTT 57.938 30.769 2.32 0.00 0.00 2.52
195 196 7.639113 TCAGTAAATGGTTGTTCAAACTTCT 57.361 32.000 2.32 0.00 0.00 2.85
196 197 6.417930 GCTCAGTAAATGGTTGTTCAAACTTC 59.582 38.462 2.32 0.00 0.00 3.01
197 198 6.127479 TGCTCAGTAAATGGTTGTTCAAACTT 60.127 34.615 2.32 0.00 0.00 2.66
198 199 5.359576 TGCTCAGTAAATGGTTGTTCAAACT 59.640 36.000 2.32 0.00 0.00 2.66
199 200 5.587289 TGCTCAGTAAATGGTTGTTCAAAC 58.413 37.500 0.00 0.00 0.00 2.93
200 201 5.221224 CCTGCTCAGTAAATGGTTGTTCAAA 60.221 40.000 0.00 0.00 0.00 2.69
201 202 4.278170 CCTGCTCAGTAAATGGTTGTTCAA 59.722 41.667 0.00 0.00 0.00 2.69
202 203 3.820467 CCTGCTCAGTAAATGGTTGTTCA 59.180 43.478 0.00 0.00 0.00 3.18
203 204 3.191371 CCCTGCTCAGTAAATGGTTGTTC 59.809 47.826 0.00 0.00 0.00 3.18
204 205 3.157087 CCCTGCTCAGTAAATGGTTGTT 58.843 45.455 0.00 0.00 0.00 2.83
205 206 2.795329 CCCTGCTCAGTAAATGGTTGT 58.205 47.619 0.00 0.00 0.00 3.32
206 207 1.474077 GCCCTGCTCAGTAAATGGTTG 59.526 52.381 0.00 0.00 0.00 3.77
207 208 1.616994 GGCCCTGCTCAGTAAATGGTT 60.617 52.381 0.00 0.00 0.00 3.67
208 209 0.034089 GGCCCTGCTCAGTAAATGGT 60.034 55.000 0.00 0.00 0.00 3.55
209 210 0.257039 AGGCCCTGCTCAGTAAATGG 59.743 55.000 0.00 0.00 0.00 3.16
210 211 1.065199 TGAGGCCCTGCTCAGTAAATG 60.065 52.381 0.00 0.00 0.00 2.32
211 212 1.289160 TGAGGCCCTGCTCAGTAAAT 58.711 50.000 0.00 0.00 0.00 1.40
212 213 1.289160 ATGAGGCCCTGCTCAGTAAA 58.711 50.000 0.00 0.00 32.74 2.01
213 214 1.210478 GAATGAGGCCCTGCTCAGTAA 59.790 52.381 0.00 0.00 32.74 2.24
214 215 0.833287 GAATGAGGCCCTGCTCAGTA 59.167 55.000 0.00 0.00 32.74 2.74
215 216 0.913451 AGAATGAGGCCCTGCTCAGT 60.913 55.000 0.00 0.00 32.74 3.41
216 217 0.255318 AAGAATGAGGCCCTGCTCAG 59.745 55.000 0.00 0.00 32.74 3.35
217 218 0.034767 CAAGAATGAGGCCCTGCTCA 60.035 55.000 0.00 0.00 0.00 4.26
218 219 0.254178 TCAAGAATGAGGCCCTGCTC 59.746 55.000 0.00 0.00 0.00 4.26
219 220 0.034670 GTCAAGAATGAGGCCCTGCT 60.035 55.000 0.00 0.00 35.88 4.24
220 221 1.034292 GGTCAAGAATGAGGCCCTGC 61.034 60.000 0.00 0.00 35.88 4.85
221 222 0.622665 AGGTCAAGAATGAGGCCCTG 59.377 55.000 0.00 0.00 35.88 4.45
222 223 0.622665 CAGGTCAAGAATGAGGCCCT 59.377 55.000 0.00 0.00 35.88 5.19
223 224 0.329596 ACAGGTCAAGAATGAGGCCC 59.670 55.000 0.00 0.00 35.88 5.80
224 225 2.420687 CCTACAGGTCAAGAATGAGGCC 60.421 54.545 0.00 0.00 35.88 5.19
225 226 2.911484 CCTACAGGTCAAGAATGAGGC 58.089 52.381 0.00 0.00 35.88 4.70
238 239 4.096984 GCCTTGAAATTCATGACCTACAGG 59.903 45.833 10.03 6.16 42.17 4.00
239 240 4.201851 CGCCTTGAAATTCATGACCTACAG 60.202 45.833 10.03 0.00 0.00 2.74
240 241 3.689161 CGCCTTGAAATTCATGACCTACA 59.311 43.478 10.03 0.00 0.00 2.74
241 242 3.065371 CCGCCTTGAAATTCATGACCTAC 59.935 47.826 10.03 0.00 0.00 3.18
242 243 3.278574 CCGCCTTGAAATTCATGACCTA 58.721 45.455 10.03 0.00 0.00 3.08
243 244 2.094675 CCGCCTTGAAATTCATGACCT 58.905 47.619 10.03 0.00 0.00 3.85
244 245 1.469767 GCCGCCTTGAAATTCATGACC 60.470 52.381 10.03 1.30 0.00 4.02
245 246 1.469767 GGCCGCCTTGAAATTCATGAC 60.470 52.381 10.03 0.00 0.00 3.06
246 247 0.817013 GGCCGCCTTGAAATTCATGA 59.183 50.000 10.03 0.00 0.00 3.07
247 248 0.819582 AGGCCGCCTTGAAATTCATG 59.180 50.000 5.94 0.00 0.00 3.07
248 249 1.560505 AAGGCCGCCTTGAAATTCAT 58.439 45.000 24.27 0.00 42.96 2.57
249 250 3.050089 AAGGCCGCCTTGAAATTCA 57.950 47.368 24.27 0.00 42.96 2.57
257 258 1.531602 AAAAGAGCAAGGCCGCCTT 60.532 52.632 19.53 19.53 45.88 4.35
258 259 2.116125 AAAAGAGCAAGGCCGCCT 59.884 55.556 5.94 5.94 33.87 5.52
259 260 2.259511 CAAAAGAGCAAGGCCGCC 59.740 61.111 0.00 0.00 0.00 6.13
260 261 2.259511 CCAAAAGAGCAAGGCCGC 59.740 61.111 0.00 0.00 0.00 6.53
261 262 2.259511 GCCAAAAGAGCAAGGCCG 59.740 61.111 0.00 0.00 41.25 6.13
263 264 0.528017 GTAGGCCAAAAGAGCAAGGC 59.472 55.000 5.01 0.00 46.28 4.35
264 265 1.909700 TGTAGGCCAAAAGAGCAAGG 58.090 50.000 5.01 0.00 0.00 3.61
265 266 3.552890 GGTTTGTAGGCCAAAAGAGCAAG 60.553 47.826 5.01 0.00 44.36 4.01
266 267 2.364002 GGTTTGTAGGCCAAAAGAGCAA 59.636 45.455 5.01 0.00 44.36 3.91
267 268 1.960689 GGTTTGTAGGCCAAAAGAGCA 59.039 47.619 5.01 0.00 44.36 4.26
268 269 1.960689 TGGTTTGTAGGCCAAAAGAGC 59.039 47.619 5.01 0.00 44.36 4.09
269 270 5.010282 AGTATGGTTTGTAGGCCAAAAGAG 58.990 41.667 5.01 0.00 44.36 2.85
270 271 4.993028 AGTATGGTTTGTAGGCCAAAAGA 58.007 39.130 5.01 0.00 44.36 2.52
271 272 4.157840 GGAGTATGGTTTGTAGGCCAAAAG 59.842 45.833 5.01 0.00 44.36 2.27
272 273 4.083565 GGAGTATGGTTTGTAGGCCAAAA 58.916 43.478 5.01 0.00 44.36 2.44
273 274 3.074687 TGGAGTATGGTTTGTAGGCCAAA 59.925 43.478 5.01 0.00 40.71 3.28
274 275 2.645297 TGGAGTATGGTTTGTAGGCCAA 59.355 45.455 5.01 0.00 38.38 4.52
275 276 2.270858 TGGAGTATGGTTTGTAGGCCA 58.729 47.619 5.01 0.00 39.33 5.36
276 277 3.577805 ATGGAGTATGGTTTGTAGGCC 57.422 47.619 0.00 0.00 0.00 5.19
277 278 4.097892 CCAAATGGAGTATGGTTTGTAGGC 59.902 45.833 0.00 0.00 37.39 3.93
278 279 4.097892 GCCAAATGGAGTATGGTTTGTAGG 59.902 45.833 2.98 0.00 36.57 3.18
279 280 4.097892 GGCCAAATGGAGTATGGTTTGTAG 59.902 45.833 2.98 0.00 36.57 2.74
280 281 4.020543 GGCCAAATGGAGTATGGTTTGTA 58.979 43.478 2.98 0.00 36.57 2.41
281 282 2.831526 GGCCAAATGGAGTATGGTTTGT 59.168 45.455 2.98 0.00 36.57 2.83
282 283 2.830923 TGGCCAAATGGAGTATGGTTTG 59.169 45.455 0.61 0.00 36.57 2.93
283 284 3.182887 TGGCCAAATGGAGTATGGTTT 57.817 42.857 0.61 0.00 36.57 3.27
284 285 2.831526 GTTGGCCAAATGGAGTATGGTT 59.168 45.455 22.47 0.00 36.57 3.67
285 286 2.456577 GTTGGCCAAATGGAGTATGGT 58.543 47.619 22.47 0.00 36.57 3.55
286 287 1.756538 GGTTGGCCAAATGGAGTATGG 59.243 52.381 22.47 0.00 37.39 2.74
287 288 1.405105 CGGTTGGCCAAATGGAGTATG 59.595 52.381 22.47 0.00 37.39 2.39
288 289 1.283613 TCGGTTGGCCAAATGGAGTAT 59.716 47.619 22.47 0.00 37.39 2.12
289 290 0.693622 TCGGTTGGCCAAATGGAGTA 59.306 50.000 22.47 0.00 37.39 2.59
290 291 0.039618 ATCGGTTGGCCAAATGGAGT 59.960 50.000 22.47 1.35 37.39 3.85
291 292 1.949525 CTATCGGTTGGCCAAATGGAG 59.050 52.381 22.47 10.35 37.39 3.86
292 293 1.283613 ACTATCGGTTGGCCAAATGGA 59.716 47.619 22.47 17.64 37.39 3.41
293 294 1.762708 ACTATCGGTTGGCCAAATGG 58.237 50.000 22.47 14.84 38.53 3.16
294 295 3.866883 AAACTATCGGTTGGCCAAATG 57.133 42.857 22.47 15.87 38.29 2.32
295 296 4.526650 AGAAAAACTATCGGTTGGCCAAAT 59.473 37.500 22.47 13.26 38.29 2.32
296 297 3.892588 AGAAAAACTATCGGTTGGCCAAA 59.107 39.130 22.47 5.00 38.29 3.28
297 298 3.492337 AGAAAAACTATCGGTTGGCCAA 58.508 40.909 16.05 16.05 38.29 4.52
298 299 3.149005 AGAAAAACTATCGGTTGGCCA 57.851 42.857 0.00 0.00 38.29 5.36
299 300 4.514781 AAAGAAAAACTATCGGTTGGCC 57.485 40.909 0.00 0.00 38.29 5.36
300 301 5.769367 AGAAAAGAAAAACTATCGGTTGGC 58.231 37.500 0.00 0.00 38.29 4.52
301 302 6.016610 TGGAGAAAAGAAAAACTATCGGTTGG 60.017 38.462 0.00 0.00 38.29 3.77
302 303 6.966021 TGGAGAAAAGAAAAACTATCGGTTG 58.034 36.000 0.00 0.00 38.29 3.77
303 304 7.094334 GGATGGAGAAAAGAAAAACTATCGGTT 60.094 37.037 0.00 0.00 40.28 4.44
304 305 6.374613 GGATGGAGAAAAGAAAAACTATCGGT 59.625 38.462 0.00 0.00 0.00 4.69
305 306 6.183360 GGGATGGAGAAAAGAAAAACTATCGG 60.183 42.308 0.00 0.00 0.00 4.18
306 307 6.183360 GGGGATGGAGAAAAGAAAAACTATCG 60.183 42.308 0.00 0.00 0.00 2.92
307 308 6.892456 AGGGGATGGAGAAAAGAAAAACTATC 59.108 38.462 0.00 0.00 0.00 2.08
308 309 6.805150 AGGGGATGGAGAAAAGAAAAACTAT 58.195 36.000 0.00 0.00 0.00 2.12
309 310 6.214177 AGGGGATGGAGAAAAGAAAAACTA 57.786 37.500 0.00 0.00 0.00 2.24
310 311 5.079998 AGGGGATGGAGAAAAGAAAAACT 57.920 39.130 0.00 0.00 0.00 2.66
311 312 5.541845 CAAGGGGATGGAGAAAAGAAAAAC 58.458 41.667 0.00 0.00 0.00 2.43
312 313 4.040339 GCAAGGGGATGGAGAAAAGAAAAA 59.960 41.667 0.00 0.00 0.00 1.94
313 314 3.578282 GCAAGGGGATGGAGAAAAGAAAA 59.422 43.478 0.00 0.00 0.00 2.29
314 315 3.165071 GCAAGGGGATGGAGAAAAGAAA 58.835 45.455 0.00 0.00 0.00 2.52
315 316 2.379907 AGCAAGGGGATGGAGAAAAGAA 59.620 45.455 0.00 0.00 0.00 2.52
316 317 1.995542 AGCAAGGGGATGGAGAAAAGA 59.004 47.619 0.00 0.00 0.00 2.52
317 318 2.521547 AGCAAGGGGATGGAGAAAAG 57.478 50.000 0.00 0.00 0.00 2.27
318 319 4.396357 TTTAGCAAGGGGATGGAGAAAA 57.604 40.909 0.00 0.00 0.00 2.29
319 320 4.396357 TTTTAGCAAGGGGATGGAGAAA 57.604 40.909 0.00 0.00 0.00 2.52
320 321 4.396357 TTTTTAGCAAGGGGATGGAGAA 57.604 40.909 0.00 0.00 0.00 2.87
339 340 7.360946 CGACCCGTCTTTTAGATTCAGATTTTT 60.361 37.037 0.00 0.00 0.00 1.94
340 341 6.092259 CGACCCGTCTTTTAGATTCAGATTTT 59.908 38.462 0.00 0.00 0.00 1.82
341 342 5.581085 CGACCCGTCTTTTAGATTCAGATTT 59.419 40.000 0.00 0.00 0.00 2.17
342 343 5.105473 TCGACCCGTCTTTTAGATTCAGATT 60.105 40.000 0.00 0.00 0.00 2.40
343 344 4.401519 TCGACCCGTCTTTTAGATTCAGAT 59.598 41.667 0.00 0.00 0.00 2.90
344 345 3.760151 TCGACCCGTCTTTTAGATTCAGA 59.240 43.478 0.00 0.00 0.00 3.27
345 346 4.106029 TCGACCCGTCTTTTAGATTCAG 57.894 45.455 0.00 0.00 0.00 3.02
346 347 4.524316 TTCGACCCGTCTTTTAGATTCA 57.476 40.909 0.00 0.00 0.00 2.57
347 348 5.349809 AGATTCGACCCGTCTTTTAGATTC 58.650 41.667 0.00 0.00 0.00 2.52
348 349 5.340439 AGATTCGACCCGTCTTTTAGATT 57.660 39.130 0.00 0.00 0.00 2.40
349 350 5.109903 CAAGATTCGACCCGTCTTTTAGAT 58.890 41.667 0.00 0.00 30.19 1.98
350 351 4.491676 CAAGATTCGACCCGTCTTTTAGA 58.508 43.478 0.00 0.00 30.19 2.10
351 352 3.617263 CCAAGATTCGACCCGTCTTTTAG 59.383 47.826 0.00 0.00 30.19 1.85
352 353 3.258872 TCCAAGATTCGACCCGTCTTTTA 59.741 43.478 0.00 0.00 30.19 1.52
353 354 2.038033 TCCAAGATTCGACCCGTCTTTT 59.962 45.455 0.00 0.00 30.19 2.27
354 355 1.621814 TCCAAGATTCGACCCGTCTTT 59.378 47.619 0.00 0.00 30.19 2.52
355 356 1.263356 TCCAAGATTCGACCCGTCTT 58.737 50.000 0.00 0.00 32.70 3.01
356 357 1.204941 CTTCCAAGATTCGACCCGTCT 59.795 52.381 0.00 0.00 0.00 4.18
357 358 1.641577 CTTCCAAGATTCGACCCGTC 58.358 55.000 0.00 0.00 0.00 4.79
358 359 0.249398 CCTTCCAAGATTCGACCCGT 59.751 55.000 0.00 0.00 0.00 5.28
359 360 1.090052 GCCTTCCAAGATTCGACCCG 61.090 60.000 0.00 0.00 0.00 5.28
360 361 0.253327 AGCCTTCCAAGATTCGACCC 59.747 55.000 0.00 0.00 0.00 4.46
378 379 7.521529 ACTAAACATTCACACAATCGATTGAG 58.478 34.615 37.75 32.31 40.14 3.02
393 394 5.444745 GCTTGCTAGTGACGACTAAACATTC 60.445 44.000 0.00 0.00 34.14 2.67
433 434 7.123397 ATGATCGCATATACAGGAATACTGACT 59.877 37.037 0.00 0.00 40.42 3.41
450 451 8.514594 CCCAGTTTATTATAAACATGATCGCAT 58.485 33.333 24.20 3.43 34.29 4.73
754 770 7.181305 TGGAGTATAGTGATTGTTTTACTGGGA 59.819 37.037 0.00 0.00 0.00 4.37
755 771 7.335627 TGGAGTATAGTGATTGTTTTACTGGG 58.664 38.462 0.00 0.00 0.00 4.45
795 811 7.459486 CAGCTACAGTGTTATTTTCTAGCAAG 58.541 38.462 0.00 0.00 0.00 4.01
799 815 5.294552 GGGCAGCTACAGTGTTATTTTCTAG 59.705 44.000 0.00 0.00 0.00 2.43
800 816 5.183228 GGGCAGCTACAGTGTTATTTTCTA 58.817 41.667 0.00 0.00 0.00 2.10
818 834 8.400184 TCAGAAATTGATAGATAATTGGGCAG 57.600 34.615 0.00 0.00 0.00 4.85
854 870 3.546724 TGGCTACTGTTGTTTGCTTGTA 58.453 40.909 0.00 0.00 0.00 2.41
892 908 6.587206 ACTTAAGGAGTACCAGTACAAGAC 57.413 41.667 7.53 0.00 36.65 3.01
1046 1066 2.222027 CCGGTTTTGCTATCCAGATCC 58.778 52.381 0.00 0.00 0.00 3.36
1139 1159 3.139810 CTCCCATGAGGACGAGGAT 57.860 57.895 0.00 0.00 40.93 3.24
1330 1350 3.364366 CGGTTCATCAGCTTGTTCTTGTC 60.364 47.826 0.00 0.00 0.00 3.18
1514 1537 6.065976 TCCAAATCCTGTCTGTCATTGTAT 57.934 37.500 0.00 0.00 0.00 2.29
1518 1541 5.776716 ACAATTCCAAATCCTGTCTGTCATT 59.223 36.000 0.00 0.00 0.00 2.57
1592 1615 1.475034 GCTCCTTGTCCATATGGCGAA 60.475 52.381 17.58 10.51 34.44 4.70
1641 1664 4.694037 ACTACTAGGGTTTGCGATTGTTTC 59.306 41.667 0.00 0.00 0.00 2.78
1682 1705 4.582656 AGATCTACTTCTCCTTGATCCACG 59.417 45.833 0.00 0.00 35.46 4.94
1718 1741 3.005367 GCTCTAGATCTACCAGTCCTTGC 59.995 52.174 0.00 0.00 0.00 4.01
1753 1776 5.159925 CGTGTGATGCAACATTTGGATTAA 58.840 37.500 0.00 0.00 42.07 1.40
1848 1872 4.454504 TCAAATTTAACGAGGAGCTGGAAC 59.545 41.667 0.00 0.00 0.00 3.62
1852 1876 5.573146 GGAATCAAATTTAACGAGGAGCTG 58.427 41.667 0.00 0.00 0.00 4.24
1871 1895 0.323629 TTGGCGAAAGGAGACGGAAT 59.676 50.000 0.00 0.00 0.00 3.01
1898 1922 6.776094 AGCAATTATAAAGAGACGAAAGCAC 58.224 36.000 0.00 0.00 0.00 4.40
1904 1944 8.317891 TGAACAAAGCAATTATAAAGAGACGA 57.682 30.769 0.00 0.00 0.00 4.20
1945 1985 4.261825 CCTTTGGCCAACAACGAAGAATTA 60.262 41.667 20.35 0.00 39.19 1.40
2009 2049 9.448438 AACTCTAGCACATATACATTTCAACAA 57.552 29.630 0.00 0.00 0.00 2.83
2056 2096 6.058183 ACAAGACTTCAGAACAAGCAACTAT 58.942 36.000 0.00 0.00 0.00 2.12
2063 2103 7.664082 ACATGATACAAGACTTCAGAACAAG 57.336 36.000 0.00 0.00 0.00 3.16
2098 2138 7.720957 TGCCACTGATCACTAATTGCTAATATT 59.279 33.333 0.00 0.00 0.00 1.28
2099 2139 7.226441 TGCCACTGATCACTAATTGCTAATAT 58.774 34.615 0.00 0.00 0.00 1.28
2101 2141 5.439721 TGCCACTGATCACTAATTGCTAAT 58.560 37.500 0.00 0.00 0.00 1.73
2228 2309 7.093156 ACCTCTTCTCTTGATGATGTACAATCA 60.093 37.037 0.00 2.53 0.00 2.57
2229 2310 7.224362 CACCTCTTCTCTTGATGATGTACAATC 59.776 40.741 0.00 0.00 0.00 2.67
2230 2311 7.046652 CACCTCTTCTCTTGATGATGTACAAT 58.953 38.462 0.00 0.00 0.00 2.71
2247 2331 1.936547 GATCGATGTTGCCACCTCTTC 59.063 52.381 0.54 0.00 0.00 2.87
2271 2355 1.896465 GTGCTACTGGAGAGAAGTGGT 59.104 52.381 0.00 0.00 0.00 4.16
2285 2369 3.166489 ACTTGATTAGAGCGGTGCTAC 57.834 47.619 0.00 0.00 39.88 3.58
2294 2378 7.856145 AAGGCAAACATCTACTTGATTAGAG 57.144 36.000 0.00 0.00 31.52 2.43
2337 2421 0.101219 GGCGATTTTCATCCAGCCAC 59.899 55.000 0.00 0.00 43.65 5.01
2381 2465 8.889717 TCTCTTTGATTTGGGTTATATTCGAAC 58.110 33.333 0.00 0.00 0.00 3.95
2407 2491 8.043710 CACTTTACCTTATCTCTCCTTGACAAT 58.956 37.037 0.00 0.00 0.00 2.71
2506 2590 8.940768 ACTTCAGAGATTTAGTATCTCAAAGC 57.059 34.615 19.19 0.00 45.18 3.51
2523 2607 3.628487 CGGAGGGAGTAGTAACTTCAGAG 59.372 52.174 0.00 0.00 35.56 3.35
2532 2616 2.787473 TCGAAACGGAGGGAGTAGTA 57.213 50.000 0.00 0.00 0.00 1.82
2540 2624 7.478520 AACATCTTATAATTCGAAACGGAGG 57.521 36.000 0.00 0.00 0.00 4.30
2543 2627 8.178964 TCCAAAACATCTTATAATTCGAAACGG 58.821 33.333 0.00 0.00 0.00 4.44
2544 2628 9.716507 ATCCAAAACATCTTATAATTCGAAACG 57.283 29.630 0.00 0.00 0.00 3.60
2581 2665 8.790718 TCACTCATTTTAGTCCGTATATAGTCC 58.209 37.037 0.00 0.00 0.00 3.85
2588 2672 8.692710 TGTAGATTCACTCATTTTAGTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
2589 2673 7.972277 GTGTAGATTCACTCATTTTAGTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
2590 2674 6.812160 GTGTAGATTCACTCATTTTAGTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
2591 2675 6.811665 TGTGTAGATTCACTCATTTTAGTCCG 59.188 38.462 0.00 0.00 38.90 4.79
2657 2741 6.405953 CCTCCGCTCCGAAATATAAGATGTAT 60.406 42.308 0.00 0.00 0.00 2.29
2658 2742 5.105877 CCTCCGCTCCGAAATATAAGATGTA 60.106 44.000 0.00 0.00 0.00 2.29
2669 2753 3.771160 GCTCCCTCCGCTCCGAAA 61.771 66.667 0.00 0.00 0.00 3.46
2676 2760 1.448013 GTAGTTGTGCTCCCTCCGC 60.448 63.158 0.00 0.00 0.00 5.54
2684 2768 5.435686 TGGGATTTAGATGTAGTTGTGCT 57.564 39.130 0.00 0.00 0.00 4.40
2686 2770 7.921786 TTCTTGGGATTTAGATGTAGTTGTG 57.078 36.000 0.00 0.00 0.00 3.33
2722 2806 1.064952 GCACACACACAAGGGTACAAC 59.935 52.381 0.00 0.00 0.00 3.32
2737 2821 3.723364 GATGCATGTCGGCGCACAC 62.723 63.158 10.83 5.20 41.79 3.82
2840 2924 1.063266 AGAAAAGGCCAAGTTGGTGGA 60.063 47.619 22.85 0.00 41.65 4.02
2846 2930 5.420739 TCACTACAAAAGAAAAGGCCAAGTT 59.579 36.000 5.01 0.00 0.00 2.66
2859 2943 6.787085 AAAGACTCGGAATCACTACAAAAG 57.213 37.500 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.