Multiple sequence alignment - TraesCS4B01G139600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G139600 chr4B 100.000 4869 0 0 1 4869 183680663 183675795 0.000000e+00 8992.0
1 TraesCS4B01G139600 chr4B 88.606 746 50 12 1364 2106 270533016 270532303 0.000000e+00 874.0
2 TraesCS4B01G139600 chr4B 87.255 510 41 6 1364 1871 270736148 270735661 1.180000e-155 560.0
3 TraesCS4B01G139600 chr4B 90.000 240 19 2 1867 2106 270692621 270692387 6.120000e-79 305.0
4 TraesCS4B01G139600 chr4B 98.958 96 1 0 4774 4869 183673238 183673333 6.480000e-39 172.0
5 TraesCS4B01G139600 chr4B 97.938 97 2 0 4773 4869 602889305 602889209 8.380000e-38 169.0
6 TraesCS4B01G139600 chr4B 95.918 98 4 0 4772 4869 602883932 602884029 5.040000e-35 159.0
7 TraesCS4B01G139600 chr4A 94.153 2651 96 29 726 3352 452598774 452596159 0.000000e+00 3982.0
8 TraesCS4B01G139600 chr4A 93.763 978 39 13 3380 4343 452596163 452595194 0.000000e+00 1448.0
9 TraesCS4B01G139600 chr4A 91.628 430 14 8 4351 4771 452595219 452594803 4.230000e-160 575.0
10 TraesCS4B01G139600 chr4D 95.765 1889 61 7 2460 4333 121076954 121075070 0.000000e+00 3027.0
11 TraesCS4B01G139600 chr4D 93.852 1952 68 29 545 2467 121078923 121076995 0.000000e+00 2892.0
12 TraesCS4B01G139600 chr4D 86.649 382 15 4 4399 4771 121074986 121074632 1.640000e-104 390.0
13 TraesCS4B01G139600 chr4D 86.770 257 25 1 281 528 121079362 121079106 1.330000e-70 278.0
14 TraesCS4B01G139600 chr3A 84.510 439 47 9 1786 2222 16017573 16017154 9.750000e-112 414.0
15 TraesCS4B01G139600 chr2B 90.299 268 19 4 2586 2849 105376482 105376218 1.300000e-90 344.0
16 TraesCS4B01G139600 chr2B 90.385 52 5 0 10 61 38736428 38736377 8.740000e-08 69.4
17 TraesCS4B01G139600 chr2A 90.244 246 20 4 1580 1824 752416445 752416203 7.860000e-83 318.0
18 TraesCS4B01G139600 chr2A 98.969 97 1 0 4773 4869 757960595 757960499 1.800000e-39 174.0
19 TraesCS4B01G139600 chr2A 97.938 97 1 1 4773 4869 757957940 757958035 3.010000e-37 167.0
20 TraesCS4B01G139600 chr1A 90.244 246 21 3 1580 1824 557969670 557969427 7.860000e-83 318.0
21 TraesCS4B01G139600 chr5A 100.000 97 0 0 4773 4869 423046850 423046754 3.870000e-41 180.0
22 TraesCS4B01G139600 chr5A 95.146 103 3 2 4767 4869 423044189 423044289 1.400000e-35 161.0
23 TraesCS4B01G139600 chr6B 98.969 97 1 0 4773 4869 93432494 93432590 1.800000e-39 174.0
24 TraesCS4B01G139600 chr7B 97.938 97 2 0 4773 4869 2750831 2750927 8.380000e-38 169.0
25 TraesCS4B01G139600 chr2D 85.965 57 8 0 8 64 607650937 607650993 1.460000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G139600 chr4B 183675795 183680663 4868 True 8992.000000 8992 100.000000 1 4869 1 chr4B.!!$R1 4868
1 TraesCS4B01G139600 chr4B 270532303 270533016 713 True 874.000000 874 88.606000 1364 2106 1 chr4B.!!$R2 742
2 TraesCS4B01G139600 chr4A 452594803 452598774 3971 True 2001.666667 3982 93.181333 726 4771 3 chr4A.!!$R1 4045
3 TraesCS4B01G139600 chr4D 121074632 121079362 4730 True 1646.750000 3027 90.759000 281 4771 4 chr4D.!!$R1 4490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.175760 TCTAGCTGCCAATGTCGGTC 59.824 55.000 0.0 0.0 0.00 4.79 F
307 308 0.177141 TGGGTCGGAATCGGATGTTC 59.823 55.000 0.0 0.0 36.95 3.18 F
893 1103 0.196118 TTCCCCCTTCCTTCCTCTGT 59.804 55.000 0.0 0.0 0.00 3.41 F
894 1104 0.252742 TCCCCCTTCCTTCCTCTGTC 60.253 60.000 0.0 0.0 0.00 3.51 F
1686 1908 0.465460 TTGTTGTGCCTGACCACCTC 60.465 55.000 0.0 0.0 34.85 3.85 F
2388 2610 1.067060 GCTGTTTGTGTTGGTTCTCCC 59.933 52.381 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 1800 0.123266 AGAGAAGGGGGAAATGGGGA 59.877 55.000 0.00 0.00 0.00 4.81 R
2263 2485 3.462483 ACACAATACAGTTGACGACCA 57.538 42.857 0.00 0.00 0.00 4.02 R
2715 2987 0.385029 GCCATGGATGCACGCATTAA 59.615 50.000 18.40 0.00 36.70 1.40 R
3094 3366 7.860373 TGTGCTTGAAAAACATGTTATAGACAC 59.140 33.333 12.39 14.01 42.04 3.67 R
3456 3738 2.160205 TCAGTACAGAGGGAGAACACG 58.840 52.381 0.00 0.00 0.00 4.49 R
4122 4410 0.107703 TTCCCGGCTCATCATCACAC 60.108 55.000 0.00 0.00 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.985730 TCCGGTTTATGTAAATTATATCGAACT 57.014 29.630 0.00 0.00 0.00 3.01
58 59 9.996554 ATATCGAACTTATGTCCATTTACATGA 57.003 29.630 0.00 0.00 40.29 3.07
59 60 8.731275 ATCGAACTTATGTCCATTTACATGAA 57.269 30.769 0.00 0.00 40.29 2.57
60 61 8.731275 TCGAACTTATGTCCATTTACATGAAT 57.269 30.769 0.00 0.00 40.29 2.57
61 62 9.173021 TCGAACTTATGTCCATTTACATGAATT 57.827 29.630 0.00 0.00 40.29 2.17
62 63 9.787532 CGAACTTATGTCCATTTACATGAATTT 57.212 29.630 0.00 0.00 40.29 1.82
64 65 9.787532 AACTTATGTCCATTTACATGAATTTCG 57.212 29.630 0.00 0.00 40.29 3.46
65 66 8.405531 ACTTATGTCCATTTACATGAATTTCGG 58.594 33.333 0.00 0.00 40.29 4.30
66 67 4.992688 TGTCCATTTACATGAATTTCGGC 58.007 39.130 0.00 0.00 31.07 5.54
67 68 4.035017 GTCCATTTACATGAATTTCGGCG 58.965 43.478 0.00 0.00 31.07 6.46
68 69 3.692101 TCCATTTACATGAATTTCGGCGT 59.308 39.130 6.85 0.00 31.07 5.68
69 70 3.790820 CCATTTACATGAATTTCGGCGTG 59.209 43.478 6.85 0.00 31.07 5.34
70 71 3.479505 TTTACATGAATTTCGGCGTGG 57.520 42.857 6.85 0.00 0.00 4.94
71 72 1.374560 TACATGAATTTCGGCGTGGG 58.625 50.000 6.85 0.00 0.00 4.61
72 73 0.608035 ACATGAATTTCGGCGTGGGT 60.608 50.000 6.85 0.00 0.00 4.51
73 74 0.525761 CATGAATTTCGGCGTGGGTT 59.474 50.000 6.85 0.00 0.00 4.11
74 75 1.067915 CATGAATTTCGGCGTGGGTTT 60.068 47.619 6.85 0.00 0.00 3.27
75 76 1.893544 TGAATTTCGGCGTGGGTTTA 58.106 45.000 6.85 0.00 0.00 2.01
76 77 1.536331 TGAATTTCGGCGTGGGTTTAC 59.464 47.619 6.85 0.00 0.00 2.01
77 78 0.518195 AATTTCGGCGTGGGTTTACG 59.482 50.000 6.85 0.00 46.28 3.18
78 79 0.320596 ATTTCGGCGTGGGTTTACGA 60.321 50.000 6.85 0.00 46.46 3.43
79 80 0.320596 TTTCGGCGTGGGTTTACGAT 60.321 50.000 6.85 0.00 46.46 3.73
80 81 1.015085 TTCGGCGTGGGTTTACGATG 61.015 55.000 6.85 0.00 46.46 3.84
81 82 1.446445 CGGCGTGGGTTTACGATGA 60.446 57.895 0.00 0.00 46.46 2.92
82 83 1.418342 CGGCGTGGGTTTACGATGAG 61.418 60.000 0.00 0.00 46.46 2.90
83 84 1.702491 GGCGTGGGTTTACGATGAGC 61.702 60.000 2.14 0.00 46.46 4.26
84 85 1.995991 CGTGGGTTTACGATGAGCG 59.004 57.895 0.00 0.00 46.46 5.03
95 96 0.792640 CGATGAGCGTTGGATATGCC 59.207 55.000 0.00 0.00 39.74 4.40
96 97 1.160137 GATGAGCGTTGGATATGCCC 58.840 55.000 0.00 0.00 39.74 5.36
97 98 0.767375 ATGAGCGTTGGATATGCCCT 59.233 50.000 0.00 0.00 39.74 5.19
98 99 0.546122 TGAGCGTTGGATATGCCCTT 59.454 50.000 0.00 0.00 39.74 3.95
99 100 1.765904 TGAGCGTTGGATATGCCCTTA 59.234 47.619 0.00 0.00 39.74 2.69
100 101 2.224281 TGAGCGTTGGATATGCCCTTAG 60.224 50.000 0.00 0.00 39.74 2.18
101 102 1.072331 AGCGTTGGATATGCCCTTAGG 59.928 52.381 0.00 0.00 39.74 2.69
102 103 1.202770 GCGTTGGATATGCCCTTAGGT 60.203 52.381 0.00 0.00 34.97 3.08
103 104 2.038033 GCGTTGGATATGCCCTTAGGTA 59.962 50.000 0.00 0.00 34.97 3.08
104 105 3.864921 GCGTTGGATATGCCCTTAGGTAG 60.865 52.174 0.00 0.00 34.97 3.18
105 106 3.576982 CGTTGGATATGCCCTTAGGTAGA 59.423 47.826 0.00 0.00 34.97 2.59
106 107 4.039973 CGTTGGATATGCCCTTAGGTAGAA 59.960 45.833 0.00 0.00 34.97 2.10
107 108 5.454187 CGTTGGATATGCCCTTAGGTAGAAA 60.454 44.000 0.00 0.00 34.97 2.52
108 109 5.562298 TGGATATGCCCTTAGGTAGAAAC 57.438 43.478 0.00 0.00 34.97 2.78
109 110 5.224441 TGGATATGCCCTTAGGTAGAAACT 58.776 41.667 0.00 0.00 34.97 2.66
110 111 5.670361 TGGATATGCCCTTAGGTAGAAACTT 59.330 40.000 0.00 0.00 34.97 2.66
111 112 6.159751 TGGATATGCCCTTAGGTAGAAACTTT 59.840 38.462 0.00 0.00 34.97 2.66
112 113 7.061054 GGATATGCCCTTAGGTAGAAACTTTT 58.939 38.462 0.00 0.00 34.57 2.27
113 114 7.560262 GGATATGCCCTTAGGTAGAAACTTTTT 59.440 37.037 0.00 0.00 34.57 1.94
135 136 4.634184 TTCGTGGTAATGTCTCTCTAGC 57.366 45.455 0.00 0.00 0.00 3.42
136 137 3.887352 TCGTGGTAATGTCTCTCTAGCT 58.113 45.455 0.00 0.00 0.00 3.32
137 138 3.628032 TCGTGGTAATGTCTCTCTAGCTG 59.372 47.826 0.00 0.00 0.00 4.24
138 139 3.712187 GTGGTAATGTCTCTCTAGCTGC 58.288 50.000 0.00 0.00 0.00 5.25
139 140 2.695666 TGGTAATGTCTCTCTAGCTGCC 59.304 50.000 0.00 0.00 0.00 4.85
140 141 2.695666 GGTAATGTCTCTCTAGCTGCCA 59.304 50.000 0.00 0.00 0.00 4.92
141 142 3.133003 GGTAATGTCTCTCTAGCTGCCAA 59.867 47.826 0.00 0.00 0.00 4.52
142 143 4.202305 GGTAATGTCTCTCTAGCTGCCAAT 60.202 45.833 0.00 0.00 0.00 3.16
143 144 2.975732 TGTCTCTCTAGCTGCCAATG 57.024 50.000 0.00 0.00 0.00 2.82
144 145 2.182827 TGTCTCTCTAGCTGCCAATGT 58.817 47.619 0.00 0.00 0.00 2.71
145 146 2.167281 TGTCTCTCTAGCTGCCAATGTC 59.833 50.000 0.00 0.00 0.00 3.06
146 147 1.406898 TCTCTCTAGCTGCCAATGTCG 59.593 52.381 0.00 0.00 0.00 4.35
147 148 0.461548 TCTCTAGCTGCCAATGTCGG 59.538 55.000 0.00 0.00 0.00 4.79
148 149 0.176680 CTCTAGCTGCCAATGTCGGT 59.823 55.000 0.00 0.00 0.00 4.69
149 150 0.175760 TCTAGCTGCCAATGTCGGTC 59.824 55.000 0.00 0.00 0.00 4.79
150 151 1.148157 CTAGCTGCCAATGTCGGTCG 61.148 60.000 0.00 0.00 0.00 4.79
151 152 2.572095 TAGCTGCCAATGTCGGTCGG 62.572 60.000 0.00 0.00 0.00 4.79
152 153 2.819595 CTGCCAATGTCGGTCGGG 60.820 66.667 0.00 0.00 0.00 5.14
155 156 4.444838 CCAATGTCGGTCGGGCGA 62.445 66.667 0.00 0.00 0.00 5.54
156 157 2.885644 CAATGTCGGTCGGGCGAG 60.886 66.667 0.00 0.00 0.00 5.03
157 158 3.066190 AATGTCGGTCGGGCGAGA 61.066 61.111 0.00 0.00 0.00 4.04
158 159 2.642254 AATGTCGGTCGGGCGAGAA 61.642 57.895 0.00 0.00 0.00 2.87
159 160 2.558554 AATGTCGGTCGGGCGAGAAG 62.559 60.000 0.00 0.00 0.00 2.85
160 161 4.493747 GTCGGTCGGGCGAGAAGG 62.494 72.222 0.00 0.00 0.00 3.46
163 164 4.452733 GGTCGGGCGAGAAGGGTG 62.453 72.222 0.00 0.00 0.00 4.61
164 165 4.452733 GTCGGGCGAGAAGGGTGG 62.453 72.222 0.00 0.00 0.00 4.61
165 166 4.689549 TCGGGCGAGAAGGGTGGA 62.690 66.667 0.00 0.00 0.00 4.02
166 167 4.148825 CGGGCGAGAAGGGTGGAG 62.149 72.222 0.00 0.00 0.00 3.86
167 168 3.787001 GGGCGAGAAGGGTGGAGG 61.787 72.222 0.00 0.00 0.00 4.30
168 169 2.683933 GGCGAGAAGGGTGGAGGA 60.684 66.667 0.00 0.00 0.00 3.71
169 170 2.726351 GGCGAGAAGGGTGGAGGAG 61.726 68.421 0.00 0.00 0.00 3.69
170 171 2.726351 GCGAGAAGGGTGGAGGAGG 61.726 68.421 0.00 0.00 0.00 4.30
171 172 1.305381 CGAGAAGGGTGGAGGAGGT 60.305 63.158 0.00 0.00 0.00 3.85
172 173 1.608717 CGAGAAGGGTGGAGGAGGTG 61.609 65.000 0.00 0.00 0.00 4.00
173 174 1.229658 AGAAGGGTGGAGGAGGTGG 60.230 63.158 0.00 0.00 0.00 4.61
174 175 1.229529 GAAGGGTGGAGGAGGTGGA 60.230 63.158 0.00 0.00 0.00 4.02
175 176 1.229658 AAGGGTGGAGGAGGTGGAG 60.230 63.158 0.00 0.00 0.00 3.86
176 177 1.751143 AAGGGTGGAGGAGGTGGAGA 61.751 60.000 0.00 0.00 0.00 3.71
177 178 1.990614 GGGTGGAGGAGGTGGAGAC 60.991 68.421 0.00 0.00 0.00 3.36
178 179 1.229209 GGTGGAGGAGGTGGAGACA 60.229 63.158 0.00 0.00 38.70 3.41
179 180 0.618968 GGTGGAGGAGGTGGAGACAT 60.619 60.000 0.00 0.00 46.14 3.06
180 181 1.343075 GGTGGAGGAGGTGGAGACATA 60.343 57.143 0.00 0.00 46.14 2.29
181 182 2.035632 GTGGAGGAGGTGGAGACATAG 58.964 57.143 0.00 0.00 46.14 2.23
182 183 1.930204 TGGAGGAGGTGGAGACATAGA 59.070 52.381 0.00 0.00 46.14 1.98
183 184 2.091610 TGGAGGAGGTGGAGACATAGAG 60.092 54.545 0.00 0.00 46.14 2.43
184 185 2.175931 GGAGGAGGTGGAGACATAGAGA 59.824 54.545 0.00 0.00 46.14 3.10
185 186 3.486383 GAGGAGGTGGAGACATAGAGAG 58.514 54.545 0.00 0.00 46.14 3.20
186 187 2.856231 AGGAGGTGGAGACATAGAGAGT 59.144 50.000 0.00 0.00 46.14 3.24
187 188 2.955660 GGAGGTGGAGACATAGAGAGTG 59.044 54.545 0.00 0.00 46.14 3.51
188 189 3.626222 GGAGGTGGAGACATAGAGAGTGT 60.626 52.174 0.00 0.00 46.14 3.55
189 190 4.385421 GGAGGTGGAGACATAGAGAGTGTA 60.385 50.000 0.00 0.00 46.14 2.90
190 191 5.381757 GAGGTGGAGACATAGAGAGTGTAT 58.618 45.833 0.00 0.00 46.14 2.29
191 192 6.466038 GGAGGTGGAGACATAGAGAGTGTATA 60.466 46.154 0.00 0.00 46.14 1.47
192 193 7.097623 AGGTGGAGACATAGAGAGTGTATAT 57.902 40.000 0.00 0.00 46.14 0.86
193 194 8.220898 AGGTGGAGACATAGAGAGTGTATATA 57.779 38.462 0.00 0.00 46.14 0.86
194 195 8.670490 AGGTGGAGACATAGAGAGTGTATATAA 58.330 37.037 0.00 0.00 46.14 0.98
195 196 9.298250 GGTGGAGACATAGAGAGTGTATATAAA 57.702 37.037 0.00 0.00 46.14 1.40
229 230 8.598202 AAAAAGTTACCCAAAGAAAAGGTAGA 57.402 30.769 0.00 0.00 37.44 2.59
230 231 8.598202 AAAAGTTACCCAAAGAAAAGGTAGAA 57.402 30.769 0.00 0.00 37.44 2.10
231 232 8.598202 AAAGTTACCCAAAGAAAAGGTAGAAA 57.402 30.769 0.00 0.00 37.44 2.52
232 233 8.598202 AAGTTACCCAAAGAAAAGGTAGAAAA 57.402 30.769 0.00 0.00 37.44 2.29
233 234 8.598202 AGTTACCCAAAGAAAAGGTAGAAAAA 57.402 30.769 0.00 0.00 37.44 1.94
234 235 8.692710 AGTTACCCAAAGAAAAGGTAGAAAAAG 58.307 33.333 0.00 0.00 37.44 2.27
235 236 8.472413 GTTACCCAAAGAAAAGGTAGAAAAAGT 58.528 33.333 0.00 0.00 37.44 2.66
236 237 6.873997 ACCCAAAGAAAAGGTAGAAAAAGTG 58.126 36.000 0.00 0.00 30.13 3.16
237 238 6.666113 ACCCAAAGAAAAGGTAGAAAAAGTGA 59.334 34.615 0.00 0.00 30.13 3.41
238 239 7.179516 ACCCAAAGAAAAGGTAGAAAAAGTGAA 59.820 33.333 0.00 0.00 30.13 3.18
239 240 8.038351 CCCAAAGAAAAGGTAGAAAAAGTGAAA 58.962 33.333 0.00 0.00 0.00 2.69
240 241 9.430623 CCAAAGAAAAGGTAGAAAAAGTGAAAA 57.569 29.630 0.00 0.00 0.00 2.29
248 249 8.494016 AGGTAGAAAAAGTGAAAATATCTCGG 57.506 34.615 0.00 0.00 0.00 4.63
249 250 8.319146 AGGTAGAAAAAGTGAAAATATCTCGGA 58.681 33.333 0.00 0.00 0.00 4.55
250 251 8.604890 GGTAGAAAAAGTGAAAATATCTCGGAG 58.395 37.037 0.00 0.00 0.00 4.63
251 252 7.617041 AGAAAAAGTGAAAATATCTCGGAGG 57.383 36.000 4.96 0.00 0.00 4.30
252 253 7.168905 AGAAAAAGTGAAAATATCTCGGAGGT 58.831 34.615 4.96 0.00 0.00 3.85
253 254 7.665974 AGAAAAAGTGAAAATATCTCGGAGGTT 59.334 33.333 4.96 0.00 0.00 3.50
254 255 7.761038 AAAAGTGAAAATATCTCGGAGGTTT 57.239 32.000 4.96 2.15 0.00 3.27
255 256 6.986904 AAGTGAAAATATCTCGGAGGTTTC 57.013 37.500 4.96 10.26 0.00 2.78
256 257 6.049955 AGTGAAAATATCTCGGAGGTTTCA 57.950 37.500 16.13 16.13 33.76 2.69
257 258 6.472887 AGTGAAAATATCTCGGAGGTTTCAA 58.527 36.000 19.16 8.80 36.90 2.69
258 259 6.371825 AGTGAAAATATCTCGGAGGTTTCAAC 59.628 38.462 19.16 15.35 36.90 3.18
259 260 6.371825 GTGAAAATATCTCGGAGGTTTCAACT 59.628 38.462 19.16 2.90 36.90 3.16
260 261 6.594159 TGAAAATATCTCGGAGGTTTCAACTC 59.406 38.462 17.02 8.16 33.37 3.01
270 271 4.434520 GAGGTTTCAACTCCTCTATTCCG 58.565 47.826 4.24 0.00 44.68 4.30
271 272 2.937149 GGTTTCAACTCCTCTATTCCGC 59.063 50.000 0.00 0.00 0.00 5.54
272 273 3.596214 GTTTCAACTCCTCTATTCCGCA 58.404 45.455 0.00 0.00 0.00 5.69
273 274 3.973206 TTCAACTCCTCTATTCCGCAA 57.027 42.857 0.00 0.00 0.00 4.85
274 275 3.526931 TCAACTCCTCTATTCCGCAAG 57.473 47.619 0.00 0.00 0.00 4.01
293 294 5.049405 CGCAAGGAGTATAATCAAATGGGTC 60.049 44.000 2.18 0.00 0.00 4.46
299 300 6.371825 GGAGTATAATCAAATGGGTCGGAATC 59.628 42.308 2.18 0.00 0.00 2.52
307 308 0.177141 TGGGTCGGAATCGGATGTTC 59.823 55.000 0.00 0.00 36.95 3.18
317 318 2.762535 TCGGATGTTCTTCCAACCTC 57.237 50.000 5.76 0.00 35.34 3.85
320 321 2.716217 GGATGTTCTTCCAACCTCCAG 58.284 52.381 4.46 0.00 35.74 3.86
325 326 0.620556 TCTTCCAACCTCCAGCATCC 59.379 55.000 0.00 0.00 0.00 3.51
326 327 0.394899 CTTCCAACCTCCAGCATCCC 60.395 60.000 0.00 0.00 0.00 3.85
334 335 0.394899 CTCCAGCATCCCCTCCAAAC 60.395 60.000 0.00 0.00 0.00 2.93
336 337 0.394899 CCAGCATCCCCTCCAAACTC 60.395 60.000 0.00 0.00 0.00 3.01
342 343 1.672356 CCCCTCCAAACTCTGCGTG 60.672 63.158 0.00 0.00 0.00 5.34
375 376 4.143179 GCTTTTGAGTGTGGTCGTGTATAC 60.143 45.833 0.00 0.00 0.00 1.47
380 381 2.753452 AGTGTGGTCGTGTATACTGGAG 59.247 50.000 4.17 0.00 0.00 3.86
385 386 2.963782 GGTCGTGTATACTGGAGGGAAT 59.036 50.000 4.17 0.00 0.00 3.01
393 394 5.843969 TGTATACTGGAGGGAATCTATGCAA 59.156 40.000 4.17 0.00 0.00 4.08
421 431 4.339814 GGATCAACCAGTAGAGGAGTACAG 59.660 50.000 0.00 0.00 38.79 2.74
445 455 2.224209 ACGAAACACTAGGGGAACACAG 60.224 50.000 0.00 0.00 0.00 3.66
475 485 2.546795 CGTGCAGAGAAGAAACTGGAGT 60.547 50.000 0.00 0.00 35.38 3.85
491 501 1.134098 GGAGTACCACATCCCCACATG 60.134 57.143 0.00 0.00 35.97 3.21
497 507 0.329261 CACATCCCCACATGGTCAGT 59.671 55.000 0.00 0.00 0.00 3.41
502 512 1.843851 TCCCCACATGGTCAGTATTCC 59.156 52.381 0.00 0.00 0.00 3.01
503 513 1.475034 CCCCACATGGTCAGTATTCCG 60.475 57.143 0.00 0.00 0.00 4.30
504 514 1.484653 CCCACATGGTCAGTATTCCGA 59.515 52.381 0.00 0.00 0.00 4.55
524 534 4.379813 CCGAAAGTCCTGAAAACATGGATG 60.380 45.833 0.00 0.00 32.03 3.51
529 614 5.573219 AGTCCTGAAAACATGGATGAATGA 58.427 37.500 0.00 0.00 32.03 2.57
533 618 6.046593 CCTGAAAACATGGATGAATGAATGG 58.953 40.000 0.00 0.00 0.00 3.16
537 622 7.766738 TGAAAACATGGATGAATGAATGGATTG 59.233 33.333 0.00 0.00 0.00 2.67
542 627 9.150028 ACATGGATGAATGAATGGATTGATAAA 57.850 29.630 0.00 0.00 0.00 1.40
549 725 9.258629 TGAATGAATGGATTGATAAAAGGAAGT 57.741 29.630 0.00 0.00 0.00 3.01
581 757 6.027025 ACAACTAGTCTAGTGGGATGGATA 57.973 41.667 17.21 0.00 39.39 2.59
582 758 6.625267 ACAACTAGTCTAGTGGGATGGATAT 58.375 40.000 17.21 0.00 39.39 1.63
583 759 6.722129 ACAACTAGTCTAGTGGGATGGATATC 59.278 42.308 17.21 0.00 39.39 1.63
589 765 6.046168 AGTCTAGTGGGATGGATATCAGTAGT 59.954 42.308 4.83 0.00 35.67 2.73
590 766 6.151985 GTCTAGTGGGATGGATATCAGTAGTG 59.848 46.154 4.83 0.00 35.67 2.74
597 773 5.247110 GGATGGATATCAGTAGTGGTGATGT 59.753 44.000 4.83 0.00 35.39 3.06
602 778 3.251479 TCAGTAGTGGTGATGTGCATC 57.749 47.619 5.30 5.30 38.29 3.91
874 1073 4.324641 GCCAACTCCCTCCTCTTTTTATCT 60.325 45.833 0.00 0.00 0.00 1.98
875 1074 5.808050 GCCAACTCCCTCCTCTTTTTATCTT 60.808 44.000 0.00 0.00 0.00 2.40
893 1103 0.196118 TTCCCCCTTCCTTCCTCTGT 59.804 55.000 0.00 0.00 0.00 3.41
894 1104 0.252742 TCCCCCTTCCTTCCTCTGTC 60.253 60.000 0.00 0.00 0.00 3.51
927 1137 2.032204 CAGCACTTGTGACAGAAGAAGC 60.032 50.000 18.49 18.91 0.00 3.86
929 1139 2.205074 CACTTGTGACAGAAGAAGCGT 58.795 47.619 18.49 0.00 0.00 5.07
932 1142 0.750249 TGTGACAGAAGAAGCGTGGA 59.250 50.000 0.00 0.00 0.00 4.02
1115 1330 1.382914 AACCTAACCCCTGCTTCCAT 58.617 50.000 0.00 0.00 0.00 3.41
1121 1336 4.113815 CCCTGCTTCCATCGCCCA 62.114 66.667 0.00 0.00 0.00 5.36
1243 1462 2.213499 GATCGTCCGATTTCCAATGCT 58.787 47.619 3.41 0.00 34.60 3.79
1244 1463 1.368641 TCGTCCGATTTCCAATGCTG 58.631 50.000 0.00 0.00 0.00 4.41
1249 1468 1.679139 CGATTTCCAATGCTGCCCTA 58.321 50.000 0.00 0.00 0.00 3.53
1256 1475 2.983879 AATGCTGCCCTACGCCCTT 61.984 57.895 0.00 0.00 36.24 3.95
1259 1478 4.101448 CTGCCCTACGCCCTTGCT 62.101 66.667 0.00 0.00 36.24 3.91
1260 1479 3.628646 CTGCCCTACGCCCTTGCTT 62.629 63.158 0.00 0.00 36.24 3.91
1263 1482 1.153349 CCCTACGCCCTTGCTTCTC 60.153 63.158 0.00 0.00 34.43 2.87
1287 1506 1.832608 TCCAGGATCACGCCGCTAT 60.833 57.895 0.00 0.00 0.00 2.97
1408 1627 1.303074 CAGCTGCAGAAGAAGGCCA 60.303 57.895 20.43 0.00 0.00 5.36
1581 1800 1.278413 GAGCCCGTAAGTTTCCCTTCT 59.722 52.381 0.00 0.00 34.46 2.85
1583 1802 1.678123 GCCCGTAAGTTTCCCTTCTCC 60.678 57.143 0.00 0.00 34.46 3.71
1586 1805 1.626825 CGTAAGTTTCCCTTCTCCCCA 59.373 52.381 0.00 0.00 34.46 4.96
1686 1908 0.465460 TTGTTGTGCCTGACCACCTC 60.465 55.000 0.00 0.00 34.85 3.85
1780 2002 1.203250 TCACCACTGGTACCCTCATCA 60.203 52.381 10.07 0.00 32.11 3.07
1822 2044 6.684897 TTTCCCTTCCATGTGAAATGAAAT 57.315 33.333 11.88 0.00 32.17 2.17
1823 2045 5.664294 TCCCTTCCATGTGAAATGAAATG 57.336 39.130 0.00 0.00 31.06 2.32
1824 2046 5.331906 TCCCTTCCATGTGAAATGAAATGA 58.668 37.500 0.00 0.00 31.06 2.57
1825 2047 5.779260 TCCCTTCCATGTGAAATGAAATGAA 59.221 36.000 0.00 0.00 31.06 2.57
1826 2048 6.269538 TCCCTTCCATGTGAAATGAAATGAAA 59.730 34.615 0.00 0.00 31.06 2.69
2388 2610 1.067060 GCTGTTTGTGTTGGTTCTCCC 59.933 52.381 0.00 0.00 0.00 4.30
2419 2641 1.327303 GAGATGTCCTCCTCGCTCAT 58.673 55.000 0.00 0.00 35.87 2.90
2508 2778 8.792831 ATTAATTATTCTGAGCAATGCTTTCG 57.207 30.769 9.91 0.92 39.88 3.46
2527 2797 6.314400 GCTTTCGTGGTGTATTTATCCACTAA 59.686 38.462 10.97 4.63 46.36 2.24
2612 2882 3.834489 ACTGAGATATGCCAGTTCTGG 57.166 47.619 13.88 13.88 40.40 3.86
2627 2897 5.361857 CCAGTTCTGGCCTTTATTTCATGAT 59.638 40.000 3.32 0.00 0.00 2.45
2671 2943 7.517321 CAAAGCTGATTTCTTAGTTCAGTCTC 58.483 38.462 0.00 0.00 39.24 3.36
2674 2946 5.063312 GCTGATTTCTTAGTTCAGTCTCTGC 59.937 44.000 9.76 0.00 39.24 4.26
2912 3184 8.812972 TCTTACCTTAAAGATATGCGACCATAT 58.187 33.333 0.00 0.00 45.10 1.78
3088 3360 5.353678 ACTTTTCAGTCAGCATTAGATGAGC 59.646 40.000 0.00 0.00 41.50 4.26
3089 3361 4.476628 TTCAGTCAGCATTAGATGAGCA 57.523 40.909 0.00 0.00 41.50 4.26
3094 3366 4.987285 AGTCAGCATTAGATGAGCAATACG 59.013 41.667 0.00 0.00 41.50 3.06
3140 3412 3.488467 CTAGCATCTGGGGCTGGGC 62.488 68.421 0.00 0.00 42.62 5.36
3156 3428 1.322538 GGGCCATGTTTGCGGAGAAT 61.323 55.000 4.39 0.00 0.00 2.40
3254 3526 4.702131 AGAATTAACTGCCCTGATTGTCAC 59.298 41.667 0.00 0.00 0.00 3.67
3306 3578 5.950758 TTAACAGCGCTTTATTTCCAAGA 57.049 34.783 7.50 0.00 0.00 3.02
3397 3679 4.397481 TCATGACTGCTCATTGTAGGAG 57.603 45.455 0.00 0.00 40.50 3.69
3599 3881 3.610911 AGGAACTGCTTTGTATACCTGC 58.389 45.455 0.00 2.91 37.18 4.85
3681 3966 4.262592 CCTCTGGCATTTTACAAAGGCTTT 60.263 41.667 6.68 6.68 0.00 3.51
3806 4091 1.264288 GCATGCTAAATCGGCTACACC 59.736 52.381 11.37 0.00 0.00 4.16
3810 4095 2.027561 TGCTAAATCGGCTACACCAACT 60.028 45.455 0.00 0.00 39.03 3.16
3872 4157 5.631096 GTGAGAAAGCCTGCAAATTAAAGAC 59.369 40.000 0.00 0.00 0.00 3.01
3911 4196 5.410355 TGTAGAGGGTGGTATACAACAAC 57.590 43.478 12.50 4.67 39.06 3.32
4050 4337 4.892934 ACAGGACCTTAAACAAATGCTGAA 59.107 37.500 0.00 0.00 0.00 3.02
4064 4351 3.784701 TGCTGAAGTAGTTCGGAGATC 57.215 47.619 21.15 5.60 41.09 2.75
4122 4410 5.114780 ACATTAGCTGCAGTAGATCTTGTG 58.885 41.667 16.64 8.01 0.00 3.33
4137 4425 1.395954 CTTGTGTGTGATGATGAGCCG 59.604 52.381 0.00 0.00 0.00 5.52
4231 4522 0.031178 CACACTGCCTTTGCTTGGTC 59.969 55.000 0.00 0.00 38.71 4.02
4237 4528 3.319122 ACTGCCTTTGCTTGGTCTTTTAG 59.681 43.478 0.00 0.00 38.71 1.85
4296 4588 6.367686 TGCAATGTTATAACTGAGATGCTG 57.632 37.500 16.33 0.39 0.00 4.41
4329 4621 2.297315 CAGACACTGGTGAGCACTAGAA 59.703 50.000 18.94 0.00 41.75 2.10
4333 4625 3.134804 ACACTGGTGAGCACTAGAACTTT 59.865 43.478 18.94 0.00 41.75 2.66
4335 4627 4.576463 CACTGGTGAGCACTAGAACTTTTT 59.424 41.667 18.94 0.00 41.75 1.94
4361 4653 6.764877 TTTTTGAAACGAGAGCACTAGTAG 57.235 37.500 0.00 0.00 32.09 2.57
4362 4654 5.449107 TTTGAAACGAGAGCACTAGTAGT 57.551 39.130 0.00 0.00 32.09 2.73
4363 4655 5.449107 TTGAAACGAGAGCACTAGTAGTT 57.551 39.130 0.00 0.00 32.09 2.24
4364 4656 5.449107 TGAAACGAGAGCACTAGTAGTTT 57.551 39.130 0.00 2.17 32.09 2.66
4470 4845 3.006110 GGTTAATCGATGGGGACGTGATA 59.994 47.826 0.00 0.00 0.00 2.15
4491 4866 0.539669 GTTAGGCCAGGCTGTTTGGT 60.540 55.000 12.43 0.00 38.02 3.67
4493 4868 1.715019 TAGGCCAGGCTGTTTGGTGT 61.715 55.000 12.43 0.00 38.02 4.16
4501 4876 4.021192 CCAGGCTGTTTGGTGTTAATTGAT 60.021 41.667 14.43 0.00 0.00 2.57
4549 4924 2.103042 GGTAGCTGCTTGGTCTGCG 61.103 63.158 7.79 0.00 36.26 5.18
4591 4966 4.986645 TGCGCACGCTGGACACAT 62.987 61.111 16.77 0.00 42.51 3.21
4592 4967 3.726517 GCGCACGCTGGACACATT 61.727 61.111 7.96 0.00 38.26 2.71
4593 4968 2.945984 CGCACGCTGGACACATTT 59.054 55.556 0.00 0.00 0.00 2.32
4594 4969 1.282570 CGCACGCTGGACACATTTT 59.717 52.632 0.00 0.00 0.00 1.82
4595 4970 0.725784 CGCACGCTGGACACATTTTC 60.726 55.000 0.00 0.00 0.00 2.29
4596 4971 0.725784 GCACGCTGGACACATTTTCG 60.726 55.000 0.00 0.00 0.00 3.46
4597 4972 0.110238 CACGCTGGACACATTTTCGG 60.110 55.000 0.00 0.00 0.00 4.30
4598 4973 1.154225 CGCTGGACACATTTTCGGC 60.154 57.895 0.00 0.00 0.00 5.54
4599 4974 1.851021 CGCTGGACACATTTTCGGCA 61.851 55.000 0.00 0.00 0.00 5.69
4600 4975 0.387239 GCTGGACACATTTTCGGCAC 60.387 55.000 0.00 0.00 0.00 5.01
4657 5032 5.236478 GGATTCAGTACACAACATATTCCCG 59.764 44.000 0.00 0.00 0.00 5.14
4756 5137 5.287226 GCCATTTAGGAAAGAAGATGCATG 58.713 41.667 2.46 0.00 41.22 4.06
4771 5152 4.771577 AGATGCATGATAGACTAGTGGAGG 59.228 45.833 2.46 0.00 0.00 4.30
4773 5154 2.564947 GCATGATAGACTAGTGGAGGGG 59.435 54.545 0.00 0.00 0.00 4.79
4774 5155 3.755483 GCATGATAGACTAGTGGAGGGGA 60.755 52.174 0.00 0.00 0.00 4.81
4775 5156 3.596940 TGATAGACTAGTGGAGGGGAC 57.403 52.381 0.00 0.00 0.00 4.46
4776 5157 2.158652 TGATAGACTAGTGGAGGGGACG 60.159 54.545 0.00 0.00 0.00 4.79
4777 5158 0.549950 TAGACTAGTGGAGGGGACGG 59.450 60.000 0.00 0.00 0.00 4.79
4778 5159 1.757340 GACTAGTGGAGGGGACGGG 60.757 68.421 0.00 0.00 0.00 5.28
4779 5160 2.444140 CTAGTGGAGGGGACGGGG 60.444 72.222 0.00 0.00 0.00 5.73
4780 5161 4.791069 TAGTGGAGGGGACGGGGC 62.791 72.222 0.00 0.00 0.00 5.80
4837 5218 2.813908 GACACGCGTCACCCATCC 60.814 66.667 9.86 0.00 42.13 3.51
4838 5219 3.583276 GACACGCGTCACCCATCCA 62.583 63.158 9.86 0.00 42.13 3.41
4839 5220 2.125147 CACGCGTCACCCATCCAT 60.125 61.111 9.86 0.00 0.00 3.41
4840 5221 2.125147 ACGCGTCACCCATCCATG 60.125 61.111 5.58 0.00 0.00 3.66
4841 5222 3.576356 CGCGTCACCCATCCATGC 61.576 66.667 0.00 0.00 0.00 4.06
4842 5223 3.211963 GCGTCACCCATCCATGCC 61.212 66.667 0.00 0.00 0.00 4.40
4843 5224 2.591753 CGTCACCCATCCATGCCT 59.408 61.111 0.00 0.00 0.00 4.75
4844 5225 1.524621 CGTCACCCATCCATGCCTC 60.525 63.158 0.00 0.00 0.00 4.70
4845 5226 1.152881 GTCACCCATCCATGCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
4846 5227 2.196776 CACCCATCCATGCCTCCC 59.803 66.667 0.00 0.00 0.00 4.30
4847 5228 3.105928 ACCCATCCATGCCTCCCC 61.106 66.667 0.00 0.00 0.00 4.81
4848 5229 3.907130 CCCATCCATGCCTCCCCC 61.907 72.222 0.00 0.00 0.00 5.40
4849 5230 2.780040 CCATCCATGCCTCCCCCT 60.780 66.667 0.00 0.00 0.00 4.79
4850 5231 2.838467 CCATCCATGCCTCCCCCTC 61.838 68.421 0.00 0.00 0.00 4.30
4851 5232 2.451294 ATCCATGCCTCCCCCTCC 60.451 66.667 0.00 0.00 0.00 4.30
4852 5233 4.843331 TCCATGCCTCCCCCTCCC 62.843 72.222 0.00 0.00 0.00 4.30
4863 5244 3.979497 CCCTCCCGTGGCCCTTTT 61.979 66.667 0.00 0.00 0.00 2.27
4864 5245 2.117423 CCTCCCGTGGCCCTTTTT 59.883 61.111 0.00 0.00 0.00 1.94
4865 5246 1.381076 CCTCCCGTGGCCCTTTTTA 59.619 57.895 0.00 0.00 0.00 1.52
4866 5247 0.679960 CCTCCCGTGGCCCTTTTTAG 60.680 60.000 0.00 0.00 0.00 1.85
4867 5248 1.303806 TCCCGTGGCCCTTTTTAGC 60.304 57.895 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.985730 AGTTCGATATAATTTACATAAACCGGA 57.014 29.630 9.46 0.00 0.00 5.14
32 33 9.996554 TCATGTAAATGGACATAAGTTCGATAT 57.003 29.630 0.00 0.00 37.99 1.63
33 34 9.825109 TTCATGTAAATGGACATAAGTTCGATA 57.175 29.630 0.00 0.00 37.99 2.92
34 35 8.731275 TTCATGTAAATGGACATAAGTTCGAT 57.269 30.769 0.00 0.00 37.99 3.59
35 36 8.731275 ATTCATGTAAATGGACATAAGTTCGA 57.269 30.769 0.00 0.00 37.99 3.71
36 37 9.787532 AAATTCATGTAAATGGACATAAGTTCG 57.212 29.630 0.00 0.00 37.99 3.95
38 39 9.787532 CGAAATTCATGTAAATGGACATAAGTT 57.212 29.630 0.00 0.00 37.99 2.66
39 40 8.405531 CCGAAATTCATGTAAATGGACATAAGT 58.594 33.333 0.00 0.00 37.99 2.24
40 41 7.379529 GCCGAAATTCATGTAAATGGACATAAG 59.620 37.037 0.00 0.00 37.99 1.73
41 42 7.199766 GCCGAAATTCATGTAAATGGACATAA 58.800 34.615 0.00 0.00 37.99 1.90
42 43 6.512578 CGCCGAAATTCATGTAAATGGACATA 60.513 38.462 0.00 0.00 37.99 2.29
43 44 5.591099 GCCGAAATTCATGTAAATGGACAT 58.409 37.500 0.00 0.00 40.78 3.06
44 45 4.438065 CGCCGAAATTCATGTAAATGGACA 60.438 41.667 0.00 0.00 0.00 4.02
45 46 4.035017 CGCCGAAATTCATGTAAATGGAC 58.965 43.478 0.00 0.00 0.00 4.02
46 47 3.692101 ACGCCGAAATTCATGTAAATGGA 59.308 39.130 0.00 0.00 0.00 3.41
47 48 3.790820 CACGCCGAAATTCATGTAAATGG 59.209 43.478 0.00 0.00 0.00 3.16
48 49 3.790820 CCACGCCGAAATTCATGTAAATG 59.209 43.478 0.00 0.00 0.00 2.32
49 50 3.181491 CCCACGCCGAAATTCATGTAAAT 60.181 43.478 0.00 0.00 0.00 1.40
50 51 2.162608 CCCACGCCGAAATTCATGTAAA 59.837 45.455 0.00 0.00 0.00 2.01
51 52 1.740585 CCCACGCCGAAATTCATGTAA 59.259 47.619 0.00 0.00 0.00 2.41
52 53 1.339247 ACCCACGCCGAAATTCATGTA 60.339 47.619 0.00 0.00 0.00 2.29
53 54 0.608035 ACCCACGCCGAAATTCATGT 60.608 50.000 0.00 0.00 0.00 3.21
54 55 0.525761 AACCCACGCCGAAATTCATG 59.474 50.000 0.00 0.00 0.00 3.07
55 56 1.253100 AAACCCACGCCGAAATTCAT 58.747 45.000 0.00 0.00 0.00 2.57
56 57 1.536331 GTAAACCCACGCCGAAATTCA 59.464 47.619 0.00 0.00 0.00 2.57
57 58 1.464521 CGTAAACCCACGCCGAAATTC 60.465 52.381 0.00 0.00 34.78 2.17
58 59 0.518195 CGTAAACCCACGCCGAAATT 59.482 50.000 0.00 0.00 34.78 1.82
59 60 0.320596 TCGTAAACCCACGCCGAAAT 60.321 50.000 0.00 0.00 41.67 2.17
60 61 0.320596 ATCGTAAACCCACGCCGAAA 60.321 50.000 0.00 0.00 41.67 3.46
61 62 1.015085 CATCGTAAACCCACGCCGAA 61.015 55.000 0.00 0.00 41.67 4.30
62 63 1.446445 CATCGTAAACCCACGCCGA 60.446 57.895 0.00 0.00 41.67 5.54
63 64 1.418342 CTCATCGTAAACCCACGCCG 61.418 60.000 0.00 0.00 41.67 6.46
64 65 1.702491 GCTCATCGTAAACCCACGCC 61.702 60.000 0.00 0.00 41.67 5.68
65 66 1.713830 GCTCATCGTAAACCCACGC 59.286 57.895 0.00 0.00 41.67 5.34
66 67 1.995991 CGCTCATCGTAAACCCACG 59.004 57.895 0.00 0.00 43.28 4.94
76 77 0.792640 GGCATATCCAACGCTCATCG 59.207 55.000 0.00 0.00 38.41 3.84
77 78 1.160137 GGGCATATCCAACGCTCATC 58.840 55.000 0.00 0.00 36.21 2.92
78 79 0.767375 AGGGCATATCCAACGCTCAT 59.233 50.000 0.00 0.00 36.21 2.90
79 80 0.546122 AAGGGCATATCCAACGCTCA 59.454 50.000 0.00 0.00 36.21 4.26
80 81 2.417719 CTAAGGGCATATCCAACGCTC 58.582 52.381 0.00 0.00 36.21 5.03
81 82 1.072331 CCTAAGGGCATATCCAACGCT 59.928 52.381 0.00 0.00 36.21 5.07
82 83 1.202770 ACCTAAGGGCATATCCAACGC 60.203 52.381 0.00 0.00 36.21 4.84
83 84 2.930826 ACCTAAGGGCATATCCAACG 57.069 50.000 0.00 0.00 36.21 4.10
84 85 5.562298 TTCTACCTAAGGGCATATCCAAC 57.438 43.478 0.00 0.00 36.21 3.77
85 86 5.670361 AGTTTCTACCTAAGGGCATATCCAA 59.330 40.000 0.00 0.00 36.21 3.53
86 87 5.224441 AGTTTCTACCTAAGGGCATATCCA 58.776 41.667 0.00 0.00 36.21 3.41
87 88 5.827326 AGTTTCTACCTAAGGGCATATCC 57.173 43.478 0.00 0.00 35.63 2.59
88 89 8.521170 AAAAAGTTTCTACCTAAGGGCATATC 57.479 34.615 0.00 0.00 35.63 1.63
111 112 5.867716 GCTAGAGAGACATTACCACGAAAAA 59.132 40.000 0.00 0.00 0.00 1.94
112 113 5.185249 AGCTAGAGAGACATTACCACGAAAA 59.815 40.000 0.00 0.00 0.00 2.29
113 114 4.705507 AGCTAGAGAGACATTACCACGAAA 59.294 41.667 0.00 0.00 0.00 3.46
114 115 4.096532 CAGCTAGAGAGACATTACCACGAA 59.903 45.833 0.00 0.00 0.00 3.85
115 116 3.628032 CAGCTAGAGAGACATTACCACGA 59.372 47.826 0.00 0.00 0.00 4.35
116 117 3.793801 GCAGCTAGAGAGACATTACCACG 60.794 52.174 0.00 0.00 0.00 4.94
117 118 3.491792 GGCAGCTAGAGAGACATTACCAC 60.492 52.174 0.00 0.00 0.00 4.16
118 119 2.695666 GGCAGCTAGAGAGACATTACCA 59.304 50.000 0.00 0.00 0.00 3.25
119 120 2.695666 TGGCAGCTAGAGAGACATTACC 59.304 50.000 0.00 0.00 0.00 2.85
120 121 4.392921 TTGGCAGCTAGAGAGACATTAC 57.607 45.455 0.00 0.00 0.00 1.89
121 122 4.406972 ACATTGGCAGCTAGAGAGACATTA 59.593 41.667 0.00 0.00 0.00 1.90
122 123 3.199508 ACATTGGCAGCTAGAGAGACATT 59.800 43.478 0.00 0.00 0.00 2.71
123 124 2.770802 ACATTGGCAGCTAGAGAGACAT 59.229 45.455 0.00 0.00 0.00 3.06
124 125 2.167281 GACATTGGCAGCTAGAGAGACA 59.833 50.000 0.00 0.00 0.00 3.41
125 126 2.797792 CGACATTGGCAGCTAGAGAGAC 60.798 54.545 0.00 0.00 0.00 3.36
126 127 1.406898 CGACATTGGCAGCTAGAGAGA 59.593 52.381 0.00 0.00 0.00 3.10
127 128 1.537776 CCGACATTGGCAGCTAGAGAG 60.538 57.143 0.00 0.00 0.00 3.20
128 129 0.461548 CCGACATTGGCAGCTAGAGA 59.538 55.000 0.00 0.00 0.00 3.10
129 130 0.176680 ACCGACATTGGCAGCTAGAG 59.823 55.000 0.00 0.00 0.00 2.43
130 131 0.175760 GACCGACATTGGCAGCTAGA 59.824 55.000 0.00 0.00 0.00 2.43
131 132 1.148157 CGACCGACATTGGCAGCTAG 61.148 60.000 0.00 0.00 0.00 3.42
132 133 1.153647 CGACCGACATTGGCAGCTA 60.154 57.895 0.00 0.00 0.00 3.32
133 134 2.434884 CGACCGACATTGGCAGCT 60.435 61.111 0.00 0.00 0.00 4.24
134 135 3.499737 CCGACCGACATTGGCAGC 61.500 66.667 0.00 0.00 0.00 5.25
135 136 2.819595 CCCGACCGACATTGGCAG 60.820 66.667 0.00 0.00 0.00 4.85
138 139 4.444838 TCGCCCGACCGACATTGG 62.445 66.667 0.00 0.00 31.36 3.16
139 140 2.829043 TTCTCGCCCGACCGACATTG 62.829 60.000 0.00 0.00 33.12 2.82
140 141 2.558554 CTTCTCGCCCGACCGACATT 62.559 60.000 0.00 0.00 33.12 2.71
141 142 3.064987 CTTCTCGCCCGACCGACAT 62.065 63.158 0.00 0.00 33.12 3.06
142 143 3.744719 CTTCTCGCCCGACCGACA 61.745 66.667 0.00 0.00 33.12 4.35
143 144 4.493747 CCTTCTCGCCCGACCGAC 62.494 72.222 0.00 0.00 33.12 4.79
146 147 4.452733 CACCCTTCTCGCCCGACC 62.453 72.222 0.00 0.00 0.00 4.79
147 148 4.452733 CCACCCTTCTCGCCCGAC 62.453 72.222 0.00 0.00 0.00 4.79
148 149 4.689549 TCCACCCTTCTCGCCCGA 62.690 66.667 0.00 0.00 0.00 5.14
149 150 4.148825 CTCCACCCTTCTCGCCCG 62.149 72.222 0.00 0.00 0.00 6.13
150 151 3.787001 CCTCCACCCTTCTCGCCC 61.787 72.222 0.00 0.00 0.00 6.13
151 152 2.683933 TCCTCCACCCTTCTCGCC 60.684 66.667 0.00 0.00 0.00 5.54
152 153 2.726351 CCTCCTCCACCCTTCTCGC 61.726 68.421 0.00 0.00 0.00 5.03
153 154 1.305381 ACCTCCTCCACCCTTCTCG 60.305 63.158 0.00 0.00 0.00 4.04
154 155 1.268283 CCACCTCCTCCACCCTTCTC 61.268 65.000 0.00 0.00 0.00 2.87
155 156 1.229658 CCACCTCCTCCACCCTTCT 60.230 63.158 0.00 0.00 0.00 2.85
156 157 1.229529 TCCACCTCCTCCACCCTTC 60.230 63.158 0.00 0.00 0.00 3.46
157 158 1.229658 CTCCACCTCCTCCACCCTT 60.230 63.158 0.00 0.00 0.00 3.95
158 159 2.177518 TCTCCACCTCCTCCACCCT 61.178 63.158 0.00 0.00 0.00 4.34
159 160 1.990614 GTCTCCACCTCCTCCACCC 60.991 68.421 0.00 0.00 0.00 4.61
160 161 0.618968 ATGTCTCCACCTCCTCCACC 60.619 60.000 0.00 0.00 0.00 4.61
161 162 2.035632 CTATGTCTCCACCTCCTCCAC 58.964 57.143 0.00 0.00 0.00 4.02
162 163 1.930204 TCTATGTCTCCACCTCCTCCA 59.070 52.381 0.00 0.00 0.00 3.86
163 164 2.175931 TCTCTATGTCTCCACCTCCTCC 59.824 54.545 0.00 0.00 0.00 4.30
164 165 3.117663 ACTCTCTATGTCTCCACCTCCTC 60.118 52.174 0.00 0.00 0.00 3.71
165 166 2.856231 ACTCTCTATGTCTCCACCTCCT 59.144 50.000 0.00 0.00 0.00 3.69
166 167 2.955660 CACTCTCTATGTCTCCACCTCC 59.044 54.545 0.00 0.00 0.00 4.30
167 168 3.626930 ACACTCTCTATGTCTCCACCTC 58.373 50.000 0.00 0.00 0.00 3.85
168 169 3.748645 ACACTCTCTATGTCTCCACCT 57.251 47.619 0.00 0.00 0.00 4.00
169 170 8.865420 TTATATACACTCTCTATGTCTCCACC 57.135 38.462 0.00 0.00 0.00 4.61
204 205 8.598202 TCTACCTTTTCTTTGGGTAACTTTTT 57.402 30.769 0.00 0.00 35.51 1.94
205 206 8.598202 TTCTACCTTTTCTTTGGGTAACTTTT 57.402 30.769 0.00 0.00 35.51 2.27
206 207 8.598202 TTTCTACCTTTTCTTTGGGTAACTTT 57.402 30.769 0.00 0.00 35.51 2.66
207 208 8.598202 TTTTCTACCTTTTCTTTGGGTAACTT 57.402 30.769 0.00 0.00 35.51 2.66
208 209 8.598202 TTTTTCTACCTTTTCTTTGGGTAACT 57.402 30.769 0.00 0.00 35.51 2.24
209 210 8.472413 ACTTTTTCTACCTTTTCTTTGGGTAAC 58.528 33.333 0.00 0.00 35.51 2.50
210 211 8.471609 CACTTTTTCTACCTTTTCTTTGGGTAA 58.528 33.333 0.00 0.00 35.51 2.85
211 212 7.835181 TCACTTTTTCTACCTTTTCTTTGGGTA 59.165 33.333 0.00 0.00 34.86 3.69
212 213 6.666113 TCACTTTTTCTACCTTTTCTTTGGGT 59.334 34.615 0.00 0.00 37.16 4.51
213 214 7.107639 TCACTTTTTCTACCTTTTCTTTGGG 57.892 36.000 0.00 0.00 0.00 4.12
214 215 8.996024 TTTCACTTTTTCTACCTTTTCTTTGG 57.004 30.769 0.00 0.00 0.00 3.28
222 223 8.947115 CCGAGATATTTTCACTTTTTCTACCTT 58.053 33.333 0.00 0.00 0.00 3.50
223 224 8.319146 TCCGAGATATTTTCACTTTTTCTACCT 58.681 33.333 0.00 0.00 0.00 3.08
224 225 8.488651 TCCGAGATATTTTCACTTTTTCTACC 57.511 34.615 0.00 0.00 0.00 3.18
225 226 8.604890 CCTCCGAGATATTTTCACTTTTTCTAC 58.395 37.037 0.00 0.00 0.00 2.59
226 227 8.319146 ACCTCCGAGATATTTTCACTTTTTCTA 58.681 33.333 0.00 0.00 0.00 2.10
227 228 7.168905 ACCTCCGAGATATTTTCACTTTTTCT 58.831 34.615 0.00 0.00 0.00 2.52
228 229 7.379098 ACCTCCGAGATATTTTCACTTTTTC 57.621 36.000 0.00 0.00 0.00 2.29
229 230 7.761038 AACCTCCGAGATATTTTCACTTTTT 57.239 32.000 0.00 0.00 0.00 1.94
230 231 7.447238 TGAAACCTCCGAGATATTTTCACTTTT 59.553 33.333 0.00 0.00 0.00 2.27
231 232 6.940298 TGAAACCTCCGAGATATTTTCACTTT 59.060 34.615 0.00 0.00 0.00 2.66
232 233 6.472887 TGAAACCTCCGAGATATTTTCACTT 58.527 36.000 0.00 0.00 0.00 3.16
233 234 6.049955 TGAAACCTCCGAGATATTTTCACT 57.950 37.500 0.00 0.00 0.00 3.41
234 235 6.371825 AGTTGAAACCTCCGAGATATTTTCAC 59.628 38.462 0.00 3.05 0.00 3.18
235 236 6.472887 AGTTGAAACCTCCGAGATATTTTCA 58.527 36.000 0.00 4.12 0.00 2.69
236 237 6.037281 GGAGTTGAAACCTCCGAGATATTTTC 59.963 42.308 0.00 1.73 0.00 2.29
237 238 5.880887 GGAGTTGAAACCTCCGAGATATTTT 59.119 40.000 0.00 0.00 0.00 1.82
238 239 5.189934 AGGAGTTGAAACCTCCGAGATATTT 59.810 40.000 0.00 0.00 41.82 1.40
239 240 4.717280 AGGAGTTGAAACCTCCGAGATATT 59.283 41.667 0.00 0.00 41.82 1.28
240 241 4.290942 AGGAGTTGAAACCTCCGAGATAT 58.709 43.478 0.00 0.00 41.82 1.63
241 242 3.700038 GAGGAGTTGAAACCTCCGAGATA 59.300 47.826 8.01 0.00 44.70 1.98
242 243 2.498078 GAGGAGTTGAAACCTCCGAGAT 59.502 50.000 8.01 0.00 44.70 2.75
243 244 1.893801 GAGGAGTTGAAACCTCCGAGA 59.106 52.381 8.01 0.00 44.70 4.04
244 245 2.371910 GAGGAGTTGAAACCTCCGAG 57.628 55.000 8.01 0.00 44.70 4.63
249 250 3.369576 GCGGAATAGAGGAGTTGAAACCT 60.370 47.826 0.00 0.00 39.41 3.50
250 251 2.937149 GCGGAATAGAGGAGTTGAAACC 59.063 50.000 0.00 0.00 0.00 3.27
251 252 3.596214 TGCGGAATAGAGGAGTTGAAAC 58.404 45.455 0.00 0.00 0.00 2.78
252 253 3.973206 TGCGGAATAGAGGAGTTGAAA 57.027 42.857 0.00 0.00 0.00 2.69
253 254 3.369471 CCTTGCGGAATAGAGGAGTTGAA 60.369 47.826 0.00 0.00 0.00 2.69
254 255 2.168521 CCTTGCGGAATAGAGGAGTTGA 59.831 50.000 0.00 0.00 0.00 3.18
255 256 2.168521 TCCTTGCGGAATAGAGGAGTTG 59.831 50.000 0.00 0.00 36.03 3.16
256 257 2.432510 CTCCTTGCGGAATAGAGGAGTT 59.567 50.000 12.83 0.00 46.55 3.01
257 258 2.035632 CTCCTTGCGGAATAGAGGAGT 58.964 52.381 12.83 0.00 46.55 3.85
258 259 2.810439 CTCCTTGCGGAATAGAGGAG 57.190 55.000 7.86 7.86 46.56 3.69
259 260 2.160721 ACTCCTTGCGGAATAGAGGA 57.839 50.000 17.30 8.06 39.29 3.71
260 261 5.723672 TTATACTCCTTGCGGAATAGAGG 57.276 43.478 17.30 4.22 39.29 3.69
261 262 6.925211 TGATTATACTCCTTGCGGAATAGAG 58.075 40.000 13.17 13.17 39.29 2.43
262 263 6.911250 TGATTATACTCCTTGCGGAATAGA 57.089 37.500 6.23 0.00 39.29 1.98
263 264 7.962964 TTTGATTATACTCCTTGCGGAATAG 57.037 36.000 0.00 0.00 39.29 1.73
264 265 7.390440 CCATTTGATTATACTCCTTGCGGAATA 59.610 37.037 0.00 0.00 39.29 1.75
265 266 6.207417 CCATTTGATTATACTCCTTGCGGAAT 59.793 38.462 0.00 0.00 39.29 3.01
266 267 5.530915 CCATTTGATTATACTCCTTGCGGAA 59.469 40.000 0.00 0.00 39.29 4.30
267 268 5.063204 CCATTTGATTATACTCCTTGCGGA 58.937 41.667 0.00 0.00 37.82 5.54
268 269 4.216257 CCCATTTGATTATACTCCTTGCGG 59.784 45.833 0.00 0.00 0.00 5.69
269 270 4.821805 ACCCATTTGATTATACTCCTTGCG 59.178 41.667 0.00 0.00 0.00 4.85
270 271 5.049405 CGACCCATTTGATTATACTCCTTGC 60.049 44.000 0.00 0.00 0.00 4.01
271 272 5.470098 CCGACCCATTTGATTATACTCCTTG 59.530 44.000 0.00 0.00 0.00 3.61
272 273 5.368523 TCCGACCCATTTGATTATACTCCTT 59.631 40.000 0.00 0.00 0.00 3.36
273 274 4.905456 TCCGACCCATTTGATTATACTCCT 59.095 41.667 0.00 0.00 0.00 3.69
274 275 5.223449 TCCGACCCATTTGATTATACTCC 57.777 43.478 0.00 0.00 0.00 3.85
275 276 6.090898 CGATTCCGACCCATTTGATTATACTC 59.909 42.308 0.00 0.00 38.22 2.59
276 277 5.932303 CGATTCCGACCCATTTGATTATACT 59.068 40.000 0.00 0.00 38.22 2.12
277 278 5.121768 CCGATTCCGACCCATTTGATTATAC 59.878 44.000 0.00 0.00 38.22 1.47
278 279 5.012251 TCCGATTCCGACCCATTTGATTATA 59.988 40.000 0.00 0.00 38.22 0.98
279 280 4.072131 CCGATTCCGACCCATTTGATTAT 58.928 43.478 0.00 0.00 38.22 1.28
283 284 0.906066 TCCGATTCCGACCCATTTGA 59.094 50.000 0.00 0.00 38.22 2.69
293 294 2.309528 TGGAAGAACATCCGATTCCG 57.690 50.000 0.00 0.00 43.43 4.30
299 300 1.739067 GGAGGTTGGAAGAACATCCG 58.261 55.000 2.77 0.00 40.61 4.18
307 308 0.394899 GGGATGCTGGAGGTTGGAAG 60.395 60.000 0.00 0.00 0.00 3.46
317 318 0.394899 GAGTTTGGAGGGGATGCTGG 60.395 60.000 0.00 0.00 0.00 4.85
320 321 1.034292 GCAGAGTTTGGAGGGGATGC 61.034 60.000 0.00 0.00 0.00 3.91
325 326 1.672356 CCACGCAGAGTTTGGAGGG 60.672 63.158 0.00 0.00 31.39 4.30
326 327 2.328099 GCCACGCAGAGTTTGGAGG 61.328 63.158 0.00 0.00 31.39 4.30
334 335 2.436646 AAATCGGGCCACGCAGAG 60.437 61.111 4.39 0.00 43.86 3.35
336 337 4.481112 GCAAATCGGGCCACGCAG 62.481 66.667 4.39 0.00 43.86 5.18
342 343 0.603065 ACTCAAAAGCAAATCGGGCC 59.397 50.000 0.00 0.00 0.00 5.80
375 376 3.181436 ACCATTGCATAGATTCCCTCCAG 60.181 47.826 0.00 0.00 0.00 3.86
380 381 3.228188 TCCACCATTGCATAGATTCCC 57.772 47.619 0.00 0.00 0.00 3.97
385 386 3.053768 TGGTTGATCCACCATTGCATAGA 60.054 43.478 14.51 0.00 42.27 1.98
393 394 2.774234 CCTCTACTGGTTGATCCACCAT 59.226 50.000 18.40 11.38 46.16 3.55
421 431 1.534163 GTTCCCCTAGTGTTTCGTTGC 59.466 52.381 0.00 0.00 0.00 4.17
445 455 2.125753 CTCTGCACGTCTGCTCCC 60.126 66.667 0.00 0.00 44.57 4.30
460 470 4.602340 TGTGGTACTCCAGTTTCTTCTC 57.398 45.455 0.00 0.00 45.24 2.87
475 485 0.916086 GACCATGTGGGGATGTGGTA 59.084 55.000 3.77 0.00 44.56 3.25
491 501 3.194968 TCAGGACTTTCGGAATACTGACC 59.805 47.826 2.77 0.09 0.00 4.02
497 507 5.414454 CCATGTTTTCAGGACTTTCGGAATA 59.586 40.000 0.00 0.00 32.95 1.75
502 512 4.455533 TCATCCATGTTTTCAGGACTTTCG 59.544 41.667 0.00 0.00 32.95 3.46
503 513 5.964958 TCATCCATGTTTTCAGGACTTTC 57.035 39.130 0.00 0.00 32.95 2.62
504 514 6.494491 TCATTCATCCATGTTTTCAGGACTTT 59.506 34.615 0.00 0.00 32.95 2.66
529 614 9.768215 TTCCTTACTTCCTTTTATCAATCCATT 57.232 29.630 0.00 0.00 0.00 3.16
542 627 9.102453 AGACTAGTTGTATTTCCTTACTTCCTT 57.898 33.333 0.00 0.00 0.00 3.36
549 725 8.117956 TCCCACTAGACTAGTTGTATTTCCTTA 58.882 37.037 12.62 0.00 36.76 2.69
581 757 3.453717 AGATGCACATCACCACTACTGAT 59.546 43.478 12.87 0.00 40.22 2.90
582 758 2.833943 AGATGCACATCACCACTACTGA 59.166 45.455 12.87 0.00 40.22 3.41
583 759 2.934553 CAGATGCACATCACCACTACTG 59.065 50.000 12.87 0.00 40.22 2.74
589 765 1.624813 TGACTCAGATGCACATCACCA 59.375 47.619 12.87 1.10 40.22 4.17
590 766 2.391616 TGACTCAGATGCACATCACC 57.608 50.000 12.87 0.00 40.22 4.02
597 773 2.223900 GGTGATCGATGACTCAGATGCA 60.224 50.000 14.74 0.00 0.00 3.96
602 778 2.027385 TGGAGGTGATCGATGACTCAG 58.973 52.381 14.74 0.00 0.00 3.35
712 888 6.435428 TCTATTGTTTCTTTGGTTTCGCTTC 58.565 36.000 0.00 0.00 0.00 3.86
713 889 6.385649 TCTATTGTTTCTTTGGTTTCGCTT 57.614 33.333 0.00 0.00 0.00 4.68
714 890 5.048713 CCTCTATTGTTTCTTTGGTTTCGCT 60.049 40.000 0.00 0.00 0.00 4.93
816 1008 3.320256 AGGGAAAAAGCAAAAGAGAGCAG 59.680 43.478 0.00 0.00 0.00 4.24
821 1013 4.502087 CCTCCAAGGGAAAAAGCAAAAGAG 60.502 45.833 0.00 0.00 0.00 2.85
874 1073 0.196118 ACAGAGGAAGGAAGGGGGAA 59.804 55.000 0.00 0.00 0.00 3.97
875 1074 0.252742 GACAGAGGAAGGAAGGGGGA 60.253 60.000 0.00 0.00 0.00 4.81
893 1103 0.536724 AGTGCTGTCACACACACAGA 59.463 50.000 11.53 0.00 43.54 3.41
894 1104 1.063027 CAAGTGCTGTCACACACACAG 59.937 52.381 11.53 0.00 45.49 3.66
1115 1330 2.682136 TGGAGATCCGTTGGGCGA 60.682 61.111 0.00 0.00 44.77 5.54
1121 1336 1.890894 CGTCTGGTGGAGATCCGTT 59.109 57.895 0.00 0.00 39.43 4.44
1211 1426 1.722011 GGACGATCCAGCGAGAAAAA 58.278 50.000 0.00 0.00 36.28 1.94
1214 1433 1.101635 ATCGGACGATCCAGCGAGAA 61.102 55.000 0.65 0.00 35.91 2.87
1256 1475 3.003173 CTGGACGGGGGAGAAGCA 61.003 66.667 0.00 0.00 0.00 3.91
1259 1478 1.382695 GATCCTGGACGGGGGAGAA 60.383 63.158 0.00 0.00 34.89 2.87
1260 1479 2.282446 GATCCTGGACGGGGGAGA 59.718 66.667 0.00 0.00 34.89 3.71
1263 1482 3.849951 CGTGATCCTGGACGGGGG 61.850 72.222 0.00 0.00 31.84 5.40
1581 1800 0.123266 AGAGAAGGGGGAAATGGGGA 59.877 55.000 0.00 0.00 0.00 4.81
1583 1802 4.542906 AAATAGAGAAGGGGGAAATGGG 57.457 45.455 0.00 0.00 0.00 4.00
1686 1908 4.641989 CCAACATAGAAGGATTTGACCTGG 59.358 45.833 0.00 0.00 40.49 4.45
1780 2002 8.154420 AGGGAAAATTGATTTGAGAATCCAAT 57.846 30.769 6.50 0.00 40.79 3.16
1822 2044 6.127394 ACCATGTTATGTTGCTGCATATTTCA 60.127 34.615 1.84 5.22 32.16 2.69
1823 2045 6.199531 CACCATGTTATGTTGCTGCATATTTC 59.800 38.462 1.84 0.01 32.16 2.17
1824 2046 6.044046 CACCATGTTATGTTGCTGCATATTT 58.956 36.000 1.84 0.00 32.16 1.40
1825 2047 5.127519 ACACCATGTTATGTTGCTGCATATT 59.872 36.000 1.84 0.00 32.16 1.28
1826 2048 4.646040 ACACCATGTTATGTTGCTGCATAT 59.354 37.500 1.84 4.13 32.16 1.78
1927 2149 3.655211 CCAGGTGCCAGCTTCCCT 61.655 66.667 0.00 0.00 0.00 4.20
2263 2485 3.462483 ACACAATACAGTTGACGACCA 57.538 42.857 0.00 0.00 0.00 4.02
2264 2486 5.165676 TGATACACAATACAGTTGACGACC 58.834 41.667 0.00 0.00 0.00 4.79
2388 2610 1.550065 GACATCTCACCACATCGACG 58.450 55.000 0.00 0.00 0.00 5.12
2472 2742 7.975616 GCTCAGAATAATTAATTTGCAGTTGGA 59.024 33.333 5.91 0.00 0.00 3.53
2546 2816 6.403866 TGCTGTCAAAGATAACCATTTGTT 57.596 33.333 0.00 0.00 41.11 2.83
2627 2897 6.016024 AGCTTTGCTGAAAGAACATGAATACA 60.016 34.615 0.00 0.00 41.12 2.29
2671 2943 2.627945 TGGCAGAAGTATAAACCGCAG 58.372 47.619 0.00 0.00 0.00 5.18
2674 2946 4.260784 GCAGAATGGCAGAAGTATAAACCG 60.261 45.833 0.00 0.00 35.86 4.44
2715 2987 0.385029 GCCATGGATGCACGCATTAA 59.615 50.000 18.40 0.00 36.70 1.40
3094 3366 7.860373 TGTGCTTGAAAAACATGTTATAGACAC 59.140 33.333 12.39 14.01 42.04 3.67
3140 3412 5.505173 AAGAATATTCTCCGCAAACATGG 57.495 39.130 18.19 0.00 36.28 3.66
3254 3526 3.415212 TCAAATTTGAGAGCCACCAGAG 58.585 45.455 16.91 0.00 32.50 3.35
3412 3694 4.928020 GGTTAAGAGTTAGTTGTTCGGAGG 59.072 45.833 0.00 0.00 0.00 4.30
3456 3738 2.160205 TCAGTACAGAGGGAGAACACG 58.840 52.381 0.00 0.00 0.00 4.49
3599 3881 4.085415 GCTTGAACTTTCGTTTGCATTCAG 60.085 41.667 0.00 0.00 32.39 3.02
3635 3917 3.069443 TCCCTGCACACAAAAATCCTTTC 59.931 43.478 0.00 0.00 0.00 2.62
3681 3966 4.389374 CCAGTCTAGCAAAGTTTGGAAGA 58.611 43.478 17.11 3.11 34.00 2.87
3769 4054 5.842907 AGCATGCTTACATAACATAGTCGA 58.157 37.500 16.30 0.00 33.67 4.20
3872 4157 5.928839 CCTCTACAAAACCCATATCATCTCG 59.071 44.000 0.00 0.00 0.00 4.04
3911 4196 3.120923 GGAGAAAACAAATGCGCACATTG 60.121 43.478 27.14 27.14 45.90 2.82
4012 4299 3.139077 GTCCTGTCAAGACCGACAAAAT 58.861 45.455 10.78 0.00 44.97 1.82
4050 4337 4.767928 ACACTTTGAGATCTCCGAACTACT 59.232 41.667 20.03 0.00 0.00 2.57
4064 4351 8.167985 CCAACACAAATTTAACAACACTTTGAG 58.832 33.333 0.00 0.00 36.48 3.02
4122 4410 0.107703 TTCCCGGCTCATCATCACAC 60.108 55.000 0.00 0.00 0.00 3.82
4137 4425 2.867647 GCAAAGACATTGTTGCCTTCCC 60.868 50.000 1.28 0.00 43.49 3.97
4231 4522 7.604164 ACACAGGACATCATCTACAACTAAAAG 59.396 37.037 0.00 0.00 0.00 2.27
4237 4528 4.997395 ACAACACAGGACATCATCTACAAC 59.003 41.667 0.00 0.00 0.00 3.32
4296 4588 1.137872 CAGTGTCTGATCTACCCAGCC 59.862 57.143 0.00 0.00 32.44 4.85
4338 4630 6.278363 ACTACTAGTGCTCTCGTTTCAAAAA 58.722 36.000 5.39 0.00 0.00 1.94
4339 4631 5.839621 ACTACTAGTGCTCTCGTTTCAAAA 58.160 37.500 5.39 0.00 0.00 2.44
4340 4632 5.449107 ACTACTAGTGCTCTCGTTTCAAA 57.551 39.130 5.39 0.00 0.00 2.69
4341 4633 5.449107 AACTACTAGTGCTCTCGTTTCAA 57.551 39.130 5.39 0.00 0.00 2.69
4342 4634 5.449107 AAACTACTAGTGCTCTCGTTTCA 57.551 39.130 5.39 0.00 0.00 2.69
4343 4635 6.766452 AAAAACTACTAGTGCTCTCGTTTC 57.234 37.500 5.39 0.00 0.00 2.78
4421 4796 1.065418 AGCCTGGCCTAACACATACAC 60.065 52.381 16.57 0.00 0.00 2.90
4423 4798 1.065418 ACAGCCTGGCCTAACACATAC 60.065 52.381 16.57 0.00 0.00 2.39
4470 4845 1.549203 CAAACAGCCTGGCCTAACAT 58.451 50.000 16.57 0.00 0.00 2.71
4491 4866 3.704800 TCACGTCCCCATCAATTAACA 57.295 42.857 0.00 0.00 0.00 2.41
4493 4868 4.006989 CACTTCACGTCCCCATCAATTAA 58.993 43.478 0.00 0.00 0.00 1.40
4501 4876 1.003839 GCATCACTTCACGTCCCCA 60.004 57.895 0.00 0.00 0.00 4.96
4549 4924 2.762327 ACCATTGTCAGCCATTTGATCC 59.238 45.455 0.00 0.00 0.00 3.36
4593 4968 1.008995 GCTGCTTTTTCGTGCCGAA 60.009 52.632 6.01 6.01 44.28 4.30
4594 4969 2.183504 TGCTGCTTTTTCGTGCCGA 61.184 52.632 0.00 0.00 0.00 5.54
4595 4970 2.010817 GTGCTGCTTTTTCGTGCCG 61.011 57.895 0.00 0.00 0.00 5.69
4596 4971 0.527385 TTGTGCTGCTTTTTCGTGCC 60.527 50.000 0.00 0.00 0.00 5.01
4597 4972 0.848305 CTTGTGCTGCTTTTTCGTGC 59.152 50.000 0.00 0.00 0.00 5.34
4598 4973 2.111756 GTCTTGTGCTGCTTTTTCGTG 58.888 47.619 0.00 0.00 0.00 4.35
4599 4974 1.742831 TGTCTTGTGCTGCTTTTTCGT 59.257 42.857 0.00 0.00 0.00 3.85
4600 4975 2.223340 ACTGTCTTGTGCTGCTTTTTCG 60.223 45.455 0.00 0.00 0.00 3.46
4657 5032 3.626028 AAAAGGATGCGTGTTCTCAAC 57.374 42.857 0.00 0.00 0.00 3.18
4713 5088 4.133078 GGCCTCTCATGTATCTTTCTTGG 58.867 47.826 0.00 0.00 0.00 3.61
4756 5137 2.506444 CGTCCCCTCCACTAGTCTATC 58.494 57.143 0.00 0.00 0.00 2.08
4820 5201 2.813908 GGATGGGTGACGCGTGTC 60.814 66.667 20.70 22.00 45.71 3.67
4821 5202 2.954684 ATGGATGGGTGACGCGTGT 61.955 57.895 20.70 0.00 0.00 4.49
4822 5203 2.125147 ATGGATGGGTGACGCGTG 60.125 61.111 20.70 0.00 0.00 5.34
4823 5204 2.125147 CATGGATGGGTGACGCGT 60.125 61.111 13.85 13.85 0.00 6.01
4824 5205 3.576356 GCATGGATGGGTGACGCG 61.576 66.667 3.53 3.53 0.00 6.01
4825 5206 3.211963 GGCATGGATGGGTGACGC 61.212 66.667 0.00 0.00 0.00 5.19
4826 5207 1.524621 GAGGCATGGATGGGTGACG 60.525 63.158 0.00 0.00 0.00 4.35
4827 5208 1.152881 GGAGGCATGGATGGGTGAC 60.153 63.158 0.00 0.00 0.00 3.67
4828 5209 2.386100 GGGAGGCATGGATGGGTGA 61.386 63.158 0.00 0.00 0.00 4.02
4829 5210 2.196776 GGGAGGCATGGATGGGTG 59.803 66.667 0.00 0.00 0.00 4.61
4830 5211 3.105928 GGGGAGGCATGGATGGGT 61.106 66.667 0.00 0.00 0.00 4.51
4831 5212 3.907130 GGGGGAGGCATGGATGGG 61.907 72.222 0.00 0.00 0.00 4.00
4832 5213 2.780040 AGGGGGAGGCATGGATGG 60.780 66.667 0.00 0.00 0.00 3.51
4833 5214 2.838467 GGAGGGGGAGGCATGGATG 61.838 68.421 0.00 0.00 0.00 3.51
4834 5215 2.451294 GGAGGGGGAGGCATGGAT 60.451 66.667 0.00 0.00 0.00 3.41
4835 5216 4.843331 GGGAGGGGGAGGCATGGA 62.843 72.222 0.00 0.00 0.00 3.41
4846 5227 2.144859 TAAAAAGGGCCACGGGAGGG 62.145 60.000 6.18 0.00 0.00 4.30
4847 5228 0.679960 CTAAAAAGGGCCACGGGAGG 60.680 60.000 6.18 0.00 0.00 4.30
4848 5229 1.313091 GCTAAAAAGGGCCACGGGAG 61.313 60.000 6.18 0.00 0.00 4.30
4849 5230 1.303806 GCTAAAAAGGGCCACGGGA 60.304 57.895 6.18 0.00 0.00 5.14
4850 5231 2.348104 GGCTAAAAAGGGCCACGGG 61.348 63.158 6.18 0.00 0.00 5.28
4851 5232 3.284336 GGCTAAAAAGGGCCACGG 58.716 61.111 6.18 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.