Multiple sequence alignment - TraesCS4B01G139100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G139100 chr4B 100.000 4778 0 0 1 4778 183563225 183558448 0.000000e+00 8824.0
1 TraesCS4B01G139100 chr4A 93.462 3319 139 22 1495 4763 452070735 452067445 0.000000e+00 4855.0
2 TraesCS4B01G139100 chr4A 89.384 1121 70 21 309 1409 452071866 452070775 0.000000e+00 1365.0
3 TraesCS4B01G139100 chr4A 86.346 791 84 14 3793 4574 236533082 236532307 0.000000e+00 841.0
4 TraesCS4B01G139100 chr4A 90.840 131 10 2 3800 3928 236533302 236533172 1.770000e-39 174.0
5 TraesCS4B01G139100 chr4A 90.840 131 10 2 3800 3928 236533529 236533399 1.770000e-39 174.0
6 TraesCS4B01G139100 chr4D 93.966 2668 107 15 2026 4681 120832565 120829940 0.000000e+00 3986.0
7 TraesCS4B01G139100 chr4D 94.156 770 39 3 639 1408 120833951 120833188 0.000000e+00 1168.0
8 TraesCS4B01G139100 chr4D 94.434 557 25 3 1477 2027 120833172 120832616 0.000000e+00 852.0
9 TraesCS4B01G139100 chr4D 91.118 608 18 12 42 648 120834680 120834108 0.000000e+00 791.0
10 TraesCS4B01G139100 chr4D 95.556 45 1 1 4682 4726 120829917 120829874 2.390000e-08 71.3
11 TraesCS4B01G139100 chr4D 95.122 41 2 0 1427 1467 75054023 75053983 1.110000e-06 65.8
12 TraesCS4B01G139100 chr1A 86.242 785 81 17 3800 4574 548729680 548730447 0.000000e+00 826.0
13 TraesCS4B01G139100 chr1A 89.313 131 12 2 3800 3928 548729453 548729583 3.830000e-36 163.0
14 TraesCS4B01G139100 chr6D 85.912 795 81 20 3793 4576 262405951 262405177 0.000000e+00 819.0
15 TraesCS4B01G139100 chr5B 86.522 601 63 12 3762 4359 119892250 119892835 0.000000e+00 645.0
16 TraesCS4B01G139100 chrUn 100.000 31 0 0 1446 1476 255530352 255530382 1.860000e-04 58.4
17 TraesCS4B01G139100 chr7D 90.909 44 2 2 1431 1473 516034653 516034695 1.860000e-04 58.4
18 TraesCS4B01G139100 chr3B 92.683 41 1 2 1434 1473 719426410 719426449 1.860000e-04 58.4
19 TraesCS4B01G139100 chr1D 90.909 44 2 2 1434 1476 34585633 34585675 1.860000e-04 58.4
20 TraesCS4B01G139100 chr1D 90.244 41 2 2 1434 1473 461135038 461135077 9.000000e-03 52.8
21 TraesCS4B01G139100 chr1B 100.000 31 0 0 1446 1476 52757897 52757927 1.860000e-04 58.4
22 TraesCS4B01G139100 chr1B 92.683 41 1 2 1434 1473 550388430 550388391 1.860000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G139100 chr4B 183558448 183563225 4777 True 8824.000000 8824 100.0000 1 4778 1 chr4B.!!$R1 4777
1 TraesCS4B01G139100 chr4A 452067445 452071866 4421 True 3110.000000 4855 91.4230 309 4763 2 chr4A.!!$R2 4454
2 TraesCS4B01G139100 chr4A 236532307 236533529 1222 True 396.333333 841 89.3420 3793 4574 3 chr4A.!!$R1 781
3 TraesCS4B01G139100 chr4D 120829874 120834680 4806 True 1373.660000 3986 93.8460 42 4726 5 chr4D.!!$R2 4684
4 TraesCS4B01G139100 chr1A 548729453 548730447 994 False 494.500000 826 87.7775 3800 4574 2 chr1A.!!$F1 774
5 TraesCS4B01G139100 chr6D 262405177 262405951 774 True 819.000000 819 85.9120 3793 4576 1 chr6D.!!$R1 783
6 TraesCS4B01G139100 chr5B 119892250 119892835 585 False 645.000000 645 86.5220 3762 4359 1 chr5B.!!$F1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 568 0.466543 TGTGGGTTGCTTGTACGAGT 59.533 50.000 11.83 0.0 0.0 4.18 F
1123 1311 0.247460 TCACCGTCTTGATCAGCTGG 59.753 55.000 15.13 0.0 0.0 4.85 F
1709 1902 1.061131 GTCAAGGTCGTCAATCATGCG 59.939 52.381 0.00 0.0 0.0 4.73 F
2858 3111 0.179001 AAGTGCTGGCCGTTACCTTT 60.179 50.000 0.00 0.0 0.0 3.11 F
3025 3278 0.457851 AATTCTCTGAGTCGCTCCGG 59.542 55.000 4.32 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1688 0.106918 AAGGGTGAGCCGTTTTGTCA 60.107 50.000 0.00 0.0 39.60 3.58 R
2082 2334 1.065418 CCTGTCCGGATTTGCCTTACT 60.065 52.381 7.81 0.0 33.16 2.24 R
3538 3791 0.038744 CTGGGTTGTCTGCCCTGAAT 59.961 55.000 1.85 0.0 46.22 2.57 R
3711 3964 1.165270 GTCCTTTCCCATTGTCCACG 58.835 55.000 0.00 0.0 0.00 4.94 R
4662 5395 1.535930 TAGTGGCGTGGTGGGGTTA 60.536 57.895 0.00 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.795561 CACGGTTCAGTTAAGCTCAAG 57.204 47.619 0.00 0.00 33.25 3.02
21 22 2.096218 CACGGTTCAGTTAAGCTCAAGC 60.096 50.000 0.00 0.00 42.49 4.01
22 23 2.143122 CGGTTCAGTTAAGCTCAAGCA 58.857 47.619 4.59 0.00 45.16 3.91
23 24 2.548057 CGGTTCAGTTAAGCTCAAGCAA 59.452 45.455 4.59 0.00 45.16 3.91
24 25 3.003275 CGGTTCAGTTAAGCTCAAGCAAA 59.997 43.478 4.59 0.00 45.16 3.68
25 26 4.497340 CGGTTCAGTTAAGCTCAAGCAAAA 60.497 41.667 4.59 0.00 45.16 2.44
26 27 5.348164 GGTTCAGTTAAGCTCAAGCAAAAA 58.652 37.500 4.59 0.00 45.16 1.94
75 76 0.880278 AGCACACGCACCACTTACTG 60.880 55.000 0.00 0.00 42.27 2.74
132 133 1.918262 TGGTTGCCATCTTCATCTCCT 59.082 47.619 0.00 0.00 0.00 3.69
133 134 3.114606 TGGTTGCCATCTTCATCTCCTA 58.885 45.455 0.00 0.00 0.00 2.94
134 135 3.135348 TGGTTGCCATCTTCATCTCCTAG 59.865 47.826 0.00 0.00 0.00 3.02
135 136 3.495806 GGTTGCCATCTTCATCTCCTAGG 60.496 52.174 0.82 0.82 0.00 3.02
136 137 3.051940 TGCCATCTTCATCTCCTAGGT 57.948 47.619 9.08 0.00 0.00 3.08
137 138 3.387962 TGCCATCTTCATCTCCTAGGTT 58.612 45.455 9.08 0.00 0.00 3.50
138 139 3.782523 TGCCATCTTCATCTCCTAGGTTT 59.217 43.478 9.08 0.00 0.00 3.27
139 140 4.228210 TGCCATCTTCATCTCCTAGGTTTT 59.772 41.667 9.08 0.00 0.00 2.43
140 141 5.196695 GCCATCTTCATCTCCTAGGTTTTT 58.803 41.667 9.08 0.00 0.00 1.94
167 168 6.408858 TTGTCTTTTGCGAGTATCTTCATC 57.591 37.500 0.00 0.00 0.00 2.92
193 194 2.858768 AGGCTAAATCCAATTCCCCTCA 59.141 45.455 0.00 0.00 0.00 3.86
199 200 2.649742 TCCAATTCCCCTCACTCTCT 57.350 50.000 0.00 0.00 0.00 3.10
211 212 5.123227 CCCTCACTCTCTTAGTCTCTGTAG 58.877 50.000 0.00 0.00 35.76 2.74
256 257 3.009695 TCAATCCATTACCCCGTTTGTCT 59.990 43.478 0.00 0.00 0.00 3.41
279 280 3.708890 TGCTTGATTTGTTTCTGCACAG 58.291 40.909 0.00 0.00 0.00 3.66
305 306 2.376695 ACCGGCCACTAGCTAATCTA 57.623 50.000 0.00 0.00 43.05 1.98
312 313 6.016943 CCGGCCACTAGCTAATCTATCTATAC 60.017 46.154 2.24 0.00 43.05 1.47
445 449 1.331756 CTTGTCACATCCGGCTAATGC 59.668 52.381 0.00 0.00 38.76 3.56
456 460 4.241681 TCCGGCTAATGCAATTTCAAAAC 58.758 39.130 0.00 0.00 41.91 2.43
494 508 4.122776 CGTGTTTATTCTGCCTGCTCTAT 58.877 43.478 0.00 0.00 0.00 1.98
548 565 1.163420 TGCTGTGGGTTGCTTGTACG 61.163 55.000 0.00 0.00 0.00 3.67
549 566 0.882927 GCTGTGGGTTGCTTGTACGA 60.883 55.000 0.00 0.00 0.00 3.43
550 567 1.148310 CTGTGGGTTGCTTGTACGAG 58.852 55.000 5.68 5.68 0.00 4.18
551 568 0.466543 TGTGGGTTGCTTGTACGAGT 59.533 50.000 11.83 0.00 0.00 4.18
552 569 1.687660 TGTGGGTTGCTTGTACGAGTA 59.312 47.619 11.83 4.27 0.00 2.59
553 570 2.064014 GTGGGTTGCTTGTACGAGTAC 58.936 52.381 11.83 9.79 36.63 2.73
561 578 6.455113 GGTTGCTTGTACGAGTACATAACATG 60.455 42.308 23.63 0.00 44.54 3.21
614 632 6.036470 GCAAGTTACTTAAAGATTGATGGCC 58.964 40.000 0.00 0.00 0.00 5.36
717 901 3.578282 ACATGGAACCAAACTCCAAATCC 59.422 43.478 0.00 0.00 45.96 3.01
730 914 9.627123 CAAACTCCAAATCCATAAAGGTAGATA 57.373 33.333 0.00 0.00 39.02 1.98
1044 1232 2.265739 GGCTCACAGGCATCGTCA 59.734 61.111 0.00 0.00 40.97 4.35
1045 1233 1.812922 GGCTCACAGGCATCGTCAG 60.813 63.158 0.00 0.00 40.97 3.51
1123 1311 0.247460 TCACCGTCTTGATCAGCTGG 59.753 55.000 15.13 0.00 0.00 4.85
1139 1327 2.042930 GGTCCTCCCCCTCATGGT 59.957 66.667 0.00 0.00 0.00 3.55
1183 1371 2.438254 GCGTCCATGCCATCACCA 60.438 61.111 0.00 0.00 0.00 4.17
1210 1398 6.428159 ACACTACAAGTTCAATGTGAGAATCC 59.572 38.462 0.00 0.00 32.27 3.01
1212 1400 5.954296 ACAAGTTCAATGTGAGAATCCTG 57.046 39.130 0.00 0.00 0.00 3.86
1252 1443 8.510243 TGCTTTCATCAGAAACACACATATAT 57.490 30.769 0.00 0.00 38.76 0.86
1293 1484 5.631512 GGAGCAATAAGTAGCTAATGACTCG 59.368 44.000 0.00 0.00 42.04 4.18
1338 1529 5.466728 CGTATAGCATTGCACCACTCTTTAT 59.533 40.000 11.91 0.00 0.00 1.40
1345 1536 4.359434 TGCACCACTCTTTATACAACCA 57.641 40.909 0.00 0.00 0.00 3.67
1374 1565 4.229876 GAGTACAATGCTTTCTTTGCCAC 58.770 43.478 0.00 0.00 32.42 5.01
1375 1566 2.531522 ACAATGCTTTCTTTGCCACC 57.468 45.000 0.00 0.00 32.42 4.61
1382 1573 2.802247 GCTTTCTTTGCCACCATTTCAC 59.198 45.455 0.00 0.00 0.00 3.18
1395 1586 5.990386 CCACCATTTCACAATGTCATTTTCA 59.010 36.000 0.00 0.00 38.58 2.69
1409 1600 6.751157 TGTCATTTTCATTTCTGATGCAACT 58.249 32.000 0.00 0.00 0.00 3.16
1410 1601 6.864685 TGTCATTTTCATTTCTGATGCAACTC 59.135 34.615 0.00 0.00 0.00 3.01
1411 1602 7.088905 GTCATTTTCATTTCTGATGCAACTCT 58.911 34.615 0.00 0.00 0.00 3.24
1412 1603 7.061905 GTCATTTTCATTTCTGATGCAACTCTG 59.938 37.037 0.00 0.00 0.00 3.35
1415 1606 7.509141 TTTCATTTCTGATGCAACTCTGTAA 57.491 32.000 0.00 0.00 0.00 2.41
1416 1607 7.509141 TTCATTTCTGATGCAACTCTGTAAA 57.491 32.000 0.00 0.00 0.00 2.01
1417 1608 6.902341 TCATTTCTGATGCAACTCTGTAAAC 58.098 36.000 0.00 0.00 0.00 2.01
1418 1609 6.712095 TCATTTCTGATGCAACTCTGTAAACT 59.288 34.615 0.00 0.00 0.00 2.66
1419 1610 7.877612 TCATTTCTGATGCAACTCTGTAAACTA 59.122 33.333 0.00 0.00 0.00 2.24
1420 1611 8.506437 CATTTCTGATGCAACTCTGTAAACTAA 58.494 33.333 0.00 0.00 0.00 2.24
1421 1612 8.621532 TTTCTGATGCAACTCTGTAAACTAAT 57.378 30.769 0.00 0.00 0.00 1.73
1422 1613 9.719355 TTTCTGATGCAACTCTGTAAACTAATA 57.281 29.630 0.00 0.00 0.00 0.98
1423 1614 8.932945 TCTGATGCAACTCTGTAAACTAATAG 57.067 34.615 0.00 0.00 0.00 1.73
1424 1615 8.531982 TCTGATGCAACTCTGTAAACTAATAGT 58.468 33.333 0.00 0.00 0.00 2.12
1425 1616 9.155975 CTGATGCAACTCTGTAAACTAATAGTT 57.844 33.333 0.00 0.00 40.80 2.24
1427 1618 9.974750 GATGCAACTCTGTAAACTAATAGTTTC 57.025 33.333 20.26 12.99 44.47 2.78
1428 1619 8.896320 TGCAACTCTGTAAACTAATAGTTTCA 57.104 30.769 20.26 16.09 44.47 2.69
1429 1620 9.332502 TGCAACTCTGTAAACTAATAGTTTCAA 57.667 29.630 20.26 10.12 44.47 2.69
1430 1621 9.813080 GCAACTCTGTAAACTAATAGTTTCAAG 57.187 33.333 20.26 17.65 44.47 3.02
1442 1633 9.978044 ACTAATAGTTTCAAGTCTCTAAAACGT 57.022 29.630 0.00 0.00 36.86 3.99
1445 1636 9.543783 AATAGTTTCAAGTCTCTAAAACGTTCT 57.456 29.630 0.00 0.00 36.86 3.01
1463 1654 9.813446 AAACGTTCTATATTAGTTTACAGAGGG 57.187 33.333 0.00 0.00 33.84 4.30
1464 1655 8.757982 ACGTTCTATATTAGTTTACAGAGGGA 57.242 34.615 0.00 0.00 0.00 4.20
1520 1713 1.535462 CAAAACGGCTCACCCTTACAG 59.465 52.381 0.00 0.00 0.00 2.74
1613 1806 1.242076 ACATGACACTGCTTTGCTCC 58.758 50.000 0.00 0.00 0.00 4.70
1649 1842 1.134037 ACTGTTAACGGCAAGTTCCCA 60.134 47.619 14.52 0.00 43.06 4.37
1709 1902 1.061131 GTCAAGGTCGTCAATCATGCG 59.939 52.381 0.00 0.00 0.00 4.73
1712 1905 2.106074 GGTCGTCAATCATGCGCCA 61.106 57.895 4.18 0.00 0.00 5.69
1769 1962 4.340097 TGCTTCAGCTGCAATTTATAGCAT 59.660 37.500 9.47 0.00 40.42 3.79
1916 2113 3.074412 CCAGTGAAGCGTTACAAGGAAT 58.926 45.455 0.00 0.00 0.00 3.01
1951 2150 4.299586 TGCATTCATCTAAGGAACCACA 57.700 40.909 0.00 0.00 0.00 4.17
1990 2189 2.185004 ACCAAGACACATCCTTTCCG 57.815 50.000 0.00 0.00 0.00 4.30
2082 2334 8.659527 TCTAACTAAATCATAATCAGGCATGGA 58.340 33.333 0.00 0.00 0.00 3.41
2100 2352 1.065709 GGAGTAAGGCAAATCCGGACA 60.066 52.381 6.12 0.00 40.77 4.02
2109 2361 1.211949 CAAATCCGGACAGGGTGGTAT 59.788 52.381 6.12 0.00 41.52 2.73
2431 2683 3.196469 TGGTGGAAAGCTGATACAGAGAG 59.804 47.826 2.81 0.00 32.44 3.20
2438 2690 6.478344 GGAAAGCTGATACAGAGAGTGTAATG 59.522 42.308 2.81 0.00 45.00 1.90
2474 2726 5.778750 GCAACTAGGAGTAGGACCCAATATA 59.221 44.000 0.00 0.00 0.00 0.86
2563 2815 5.939764 TGAATGAAGGTGCTACTACATCT 57.060 39.130 0.00 0.00 30.27 2.90
2612 2865 8.268850 TCCATTATAGAGTGAAAAACTGCTTC 57.731 34.615 0.00 0.00 40.07 3.86
2858 3111 0.179001 AAGTGCTGGCCGTTACCTTT 60.179 50.000 0.00 0.00 0.00 3.11
2908 3161 5.099575 CCACTACAAGTTGACAACAAAACC 58.900 41.667 20.08 0.00 37.77 3.27
2931 3184 2.936993 GCACTGCTACCTTGCACTATGT 60.937 50.000 0.00 0.00 38.12 2.29
2995 3248 2.362889 CCACAGAATGCCACCCCC 60.363 66.667 0.00 0.00 42.53 5.40
3025 3278 0.457851 AATTCTCTGAGTCGCTCCGG 59.542 55.000 4.32 0.00 0.00 5.14
3037 3290 2.492090 CTCCGGAGCCTCAACTCG 59.508 66.667 20.67 0.00 37.57 4.18
3346 3599 3.952967 TGCCATATAATGCTTCAGTGCAA 59.047 39.130 0.00 0.00 46.61 4.08
3433 3686 2.905935 TTTTTGTCGTTGGGCGGGGA 62.906 55.000 0.00 0.00 41.72 4.81
3511 3764 4.008074 TGAGAGAAACACCATTGGAGTC 57.992 45.455 10.37 0.00 0.00 3.36
3579 3832 7.420680 CCCAGGTAGAGATTTCAATCCTACATT 60.421 40.741 19.29 10.87 38.96 2.71
3580 3833 7.995488 CCAGGTAGAGATTTCAATCCTACATTT 59.005 37.037 19.29 9.42 38.96 2.32
3581 3834 9.050601 CAGGTAGAGATTTCAATCCTACATTTC 57.949 37.037 19.29 9.67 38.96 2.17
3582 3835 8.997734 AGGTAGAGATTTCAATCCTACATTTCT 58.002 33.333 19.29 9.01 38.96 2.52
3583 3836 9.620259 GGTAGAGATTTCAATCCTACATTTCTT 57.380 33.333 19.29 0.00 38.96 2.52
3586 3839 9.393512 AGAGATTTCAATCCTACATTTCTTCAG 57.606 33.333 0.00 0.00 36.04 3.02
3587 3840 9.388506 GAGATTTCAATCCTACATTTCTTCAGA 57.611 33.333 0.00 0.00 36.04 3.27
3588 3841 9.917887 AGATTTCAATCCTACATTTCTTCAGAT 57.082 29.630 0.00 0.00 36.04 2.90
3607 3860 9.646427 CTTCAGATAATAATACCCTACTGCTTC 57.354 37.037 0.00 0.00 0.00 3.86
3611 3864 9.839185 AGATAATAATACCCTACTGCTTCCTAA 57.161 33.333 0.00 0.00 0.00 2.69
3621 3874 4.706842 ACTGCTTCCTAAAAGGAGTTGA 57.293 40.909 6.18 0.00 46.73 3.18
3628 3881 8.055181 TGCTTCCTAAAAGGAGTTGATTGATAT 58.945 33.333 0.00 0.00 46.73 1.63
3629 3882 8.348507 GCTTCCTAAAAGGAGTTGATTGATATG 58.651 37.037 0.00 0.00 46.73 1.78
3630 3883 9.401058 CTTCCTAAAAGGAGTTGATTGATATGT 57.599 33.333 0.00 0.00 46.73 2.29
3711 3964 3.339141 GGGACTCAAGATGGTCTTTGTC 58.661 50.000 11.19 11.19 33.78 3.18
3727 3980 1.890876 TGTCGTGGACAATGGGAAAG 58.109 50.000 0.00 0.00 39.78 2.62
3735 3988 2.576648 GGACAATGGGAAAGGACCTAGT 59.423 50.000 0.00 0.00 0.00 2.57
3791 4044 4.999950 CCAGTGCTGATTACAAGAAGAGTT 59.000 41.667 0.02 0.00 0.00 3.01
3793 4046 6.820656 CCAGTGCTGATTACAAGAAGAGTTAT 59.179 38.462 0.02 0.00 0.00 1.89
3795 4048 7.547019 CAGTGCTGATTACAAGAAGAGTTATCA 59.453 37.037 0.00 0.00 34.85 2.15
3807 4060 7.639113 AGAAGAGTTATCAGACTTAGTCCAG 57.361 40.000 8.96 2.45 32.18 3.86
3810 4063 5.592688 AGAGTTATCAGACTTAGTCCAGCTC 59.407 44.000 8.96 8.69 32.18 4.09
3811 4064 5.265191 AGTTATCAGACTTAGTCCAGCTCA 58.735 41.667 8.96 0.00 32.18 4.26
3837 4318 6.920569 AAACAGATACTGAAACTTCAACGT 57.079 33.333 5.76 0.00 36.64 3.99
4027 4738 3.979911 TGGGATTGTATCTGTTGGCATT 58.020 40.909 0.00 0.00 0.00 3.56
4098 4811 4.685169 ATCGCAATAAGAAGTGGTGTTG 57.315 40.909 0.00 0.00 0.00 3.33
4105 4818 6.204882 GCAATAAGAAGTGGTGTTGTAGAAGT 59.795 38.462 0.00 0.00 0.00 3.01
4111 4824 2.802816 GTGGTGTTGTAGAAGTCAGCTG 59.197 50.000 7.63 7.63 0.00 4.24
4178 4892 7.496591 ACATTCCTAACTCGTGTTAAACAAGAA 59.503 33.333 10.92 9.14 36.25 2.52
4217 4931 9.696917 AATCTGTTGTCTAAAAATTCCATGTTC 57.303 29.630 0.00 0.00 0.00 3.18
4243 4957 2.282407 TGATCCATGATCAGTGTTGCG 58.718 47.619 0.09 0.00 43.11 4.85
4343 5059 4.774200 AGGATTGTCCCAAAAAGGATCTTG 59.226 41.667 0.00 0.00 41.22 3.02
4532 5265 4.507916 CGAGGCGGAGGAGGAGGA 62.508 72.222 0.00 0.00 0.00 3.71
4533 5266 2.520741 GAGGCGGAGGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
4534 5267 4.150454 AGGCGGAGGAGGAGGAGG 62.150 72.222 0.00 0.00 0.00 4.30
4616 5349 0.036306 GGAGACGGGGTTGAACATGT 59.964 55.000 0.00 0.00 0.00 3.21
4717 5472 4.815533 TTCAGAGCATCCATATAGCCTC 57.184 45.455 0.00 0.00 33.66 4.70
4719 5474 4.022603 TCAGAGCATCCATATAGCCTCTC 58.977 47.826 0.00 0.00 33.66 3.20
4763 5518 4.696899 TCCATATAGCCGAACTCGTATG 57.303 45.455 0.00 0.38 37.74 2.39
4764 5519 3.442625 TCCATATAGCCGAACTCGTATGG 59.557 47.826 15.31 15.31 42.84 2.74
4767 5522 2.185867 GCCGAACTCGTATGGCCA 59.814 61.111 8.56 8.56 41.70 5.36
4768 5523 1.448893 GCCGAACTCGTATGGCCAA 60.449 57.895 10.96 0.00 41.70 4.52
4769 5524 1.022451 GCCGAACTCGTATGGCCAAA 61.022 55.000 10.96 0.00 41.70 3.28
4770 5525 1.663695 CCGAACTCGTATGGCCAAAT 58.336 50.000 10.96 0.00 37.74 2.32
4771 5526 1.330521 CCGAACTCGTATGGCCAAATG 59.669 52.381 10.96 1.54 37.74 2.32
4772 5527 1.330521 CGAACTCGTATGGCCAAATGG 59.669 52.381 10.96 1.65 34.62 3.16
4773 5528 4.442609 CGAACTCGTATGGCCAAATGGC 62.443 54.545 10.96 16.15 46.70 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.096218 GCTTGAGCTTAACTGAACCGTG 60.096 50.000 0.00 0.00 38.21 4.94
1 2 2.143925 GCTTGAGCTTAACTGAACCGT 58.856 47.619 0.00 0.00 38.21 4.83
23 24 6.112734 AGCGTTTTCCTTTCCATTTCTTTTT 58.887 32.000 0.00 0.00 0.00 1.94
24 25 5.670485 AGCGTTTTCCTTTCCATTTCTTTT 58.330 33.333 0.00 0.00 0.00 2.27
25 26 5.276461 AGCGTTTTCCTTTCCATTTCTTT 57.724 34.783 0.00 0.00 0.00 2.52
26 27 4.937201 AGCGTTTTCCTTTCCATTTCTT 57.063 36.364 0.00 0.00 0.00 2.52
27 28 4.937201 AAGCGTTTTCCTTTCCATTTCT 57.063 36.364 0.00 0.00 0.00 2.52
28 29 5.118664 GCTTAAGCGTTTTCCTTTCCATTTC 59.881 40.000 12.53 0.00 0.00 2.17
29 30 4.988540 GCTTAAGCGTTTTCCTTTCCATTT 59.011 37.500 12.53 0.00 0.00 2.32
30 31 4.556233 GCTTAAGCGTTTTCCTTTCCATT 58.444 39.130 12.53 0.00 0.00 3.16
31 32 4.174411 GCTTAAGCGTTTTCCTTTCCAT 57.826 40.909 12.53 0.00 0.00 3.41
32 33 3.636282 GCTTAAGCGTTTTCCTTTCCA 57.364 42.857 12.53 0.00 0.00 3.53
75 76 3.834489 AGCGATGGATCATGGATATCC 57.166 47.619 15.39 15.39 42.84 2.59
137 138 7.703328 AGATACTCGCAAAAGACAAAGAAAAA 58.297 30.769 0.00 0.00 0.00 1.94
138 139 7.259290 AGATACTCGCAAAAGACAAAGAAAA 57.741 32.000 0.00 0.00 0.00 2.29
139 140 6.861065 AGATACTCGCAAAAGACAAAGAAA 57.139 33.333 0.00 0.00 0.00 2.52
140 141 6.481976 TGAAGATACTCGCAAAAGACAAAGAA 59.518 34.615 0.00 0.00 0.00 2.52
141 142 5.989168 TGAAGATACTCGCAAAAGACAAAGA 59.011 36.000 0.00 0.00 0.00 2.52
142 143 6.228273 TGAAGATACTCGCAAAAGACAAAG 57.772 37.500 0.00 0.00 0.00 2.77
143 144 6.650807 AGATGAAGATACTCGCAAAAGACAAA 59.349 34.615 0.00 0.00 0.00 2.83
144 145 6.166279 AGATGAAGATACTCGCAAAAGACAA 58.834 36.000 0.00 0.00 0.00 3.18
145 146 5.724328 AGATGAAGATACTCGCAAAAGACA 58.276 37.500 0.00 0.00 0.00 3.41
146 147 5.233263 GGAGATGAAGATACTCGCAAAAGAC 59.767 44.000 0.00 0.00 0.00 3.01
147 148 5.127845 AGGAGATGAAGATACTCGCAAAAGA 59.872 40.000 0.00 0.00 0.00 2.52
148 149 5.355596 AGGAGATGAAGATACTCGCAAAAG 58.644 41.667 0.00 0.00 0.00 2.27
149 150 5.344743 AGGAGATGAAGATACTCGCAAAA 57.655 39.130 0.00 0.00 0.00 2.44
150 151 5.010112 CCTAGGAGATGAAGATACTCGCAAA 59.990 44.000 1.05 0.00 0.00 3.68
151 152 4.520874 CCTAGGAGATGAAGATACTCGCAA 59.479 45.833 1.05 0.00 0.00 4.85
152 153 4.075682 CCTAGGAGATGAAGATACTCGCA 58.924 47.826 1.05 0.00 0.00 5.10
153 154 3.119637 GCCTAGGAGATGAAGATACTCGC 60.120 52.174 14.75 0.00 0.00 5.03
154 155 4.331968 AGCCTAGGAGATGAAGATACTCG 58.668 47.826 14.75 0.00 0.00 4.18
155 156 7.768807 TTTAGCCTAGGAGATGAAGATACTC 57.231 40.000 14.75 0.00 0.00 2.59
156 157 7.398904 GGATTTAGCCTAGGAGATGAAGATACT 59.601 40.741 14.75 0.00 0.00 2.12
157 158 7.179338 TGGATTTAGCCTAGGAGATGAAGATAC 59.821 40.741 14.75 0.00 0.00 2.24
158 159 7.248976 TGGATTTAGCCTAGGAGATGAAGATA 58.751 38.462 14.75 0.00 0.00 1.98
167 168 4.507512 GGGGAATTGGATTTAGCCTAGGAG 60.508 50.000 14.75 0.00 0.00 3.69
211 212 0.736325 ATGCGCGTAGTTGTCAGGTC 60.736 55.000 8.43 0.00 0.00 3.85
256 257 3.380954 TGTGCAGAAACAAATCAAGCAGA 59.619 39.130 0.00 0.00 34.66 4.26
279 280 0.240145 GCTAGTGGCCGGTTTTTGTC 59.760 55.000 1.90 0.00 34.27 3.18
305 306 8.638873 TGATGTGTCGTTTAGATTGGTATAGAT 58.361 33.333 0.00 0.00 0.00 1.98
312 313 5.220854 GGGATTGATGTGTCGTTTAGATTGG 60.221 44.000 0.00 0.00 0.00 3.16
359 360 5.996669 TTGTGTATGCATCAGATCATCAC 57.003 39.130 0.19 2.38 0.00 3.06
445 449 4.023878 CCTTGTGGCCATGTTTTGAAATTG 60.024 41.667 9.72 0.00 0.00 2.32
456 460 1.077501 ACGGATCCTTGTGGCCATG 60.078 57.895 9.72 2.05 0.00 3.66
494 508 7.948447 TGAACCTTATAGCCTAGCATTAGAGTA 59.052 37.037 0.00 0.00 0.00 2.59
614 632 4.033684 GCTAGTACGAGTGTCGGTTAATG 58.966 47.826 4.84 0.00 45.59 1.90
653 837 1.421646 AGAGCACTTGGGCTGTTAACT 59.578 47.619 0.62 0.00 45.99 2.24
717 901 6.480320 GGACTTGCAGTGTATCTACCTTTATG 59.520 42.308 0.00 0.00 0.00 1.90
785 969 1.448540 CCCAGTTGCACCGAGCTAG 60.449 63.158 0.00 0.00 45.94 3.42
864 1048 1.225704 GGCTAGCTGTGCTGGGAAT 59.774 57.895 15.72 0.00 40.10 3.01
965 1149 1.510844 GCATGGTTTTAGTGGCCCG 59.489 57.895 0.00 0.00 0.00 6.13
972 1156 1.024579 AGGGCGACGCATGGTTTTAG 61.025 55.000 23.09 0.00 0.00 1.85
1044 1232 0.961358 CGGAGGAGACAAGGACGACT 60.961 60.000 0.00 0.00 0.00 4.18
1045 1233 0.959372 TCGGAGGAGACAAGGACGAC 60.959 60.000 0.00 0.00 0.00 4.34
1106 1294 0.247736 GACCAGCTGATCAAGACGGT 59.752 55.000 17.39 0.00 0.00 4.83
1123 1311 1.306997 TGACCATGAGGGGGAGGAC 60.307 63.158 0.00 0.00 42.91 3.85
1183 1371 6.161855 TCTCACATTGAACTTGTAGTGTCT 57.838 37.500 0.00 0.00 0.00 3.41
1242 1433 6.364976 CCGGTGTGTATGTACATATATGTGTG 59.635 42.308 25.48 6.82 41.89 3.82
1252 1443 2.097036 CTCCTCCGGTGTGTATGTACA 58.903 52.381 0.00 0.00 0.00 2.90
1261 1452 1.276622 ACTTATTGCTCCTCCGGTGT 58.723 50.000 0.00 0.00 0.00 4.16
1279 1470 4.174009 TGCAGAAACGAGTCATTAGCTAC 58.826 43.478 0.00 0.00 0.00 3.58
1293 1484 1.098050 CCCTGGCTACATGCAGAAAC 58.902 55.000 0.00 0.00 45.15 2.78
1338 1529 6.099701 AGCATTGTACTCCATATCTGGTTGTA 59.900 38.462 0.00 0.37 43.61 2.41
1345 1536 7.201767 GCAAAGAAAGCATTGTACTCCATATCT 60.202 37.037 0.00 0.00 0.00 1.98
1374 1565 8.995220 AGAAATGAAAATGACATTGTGAAATGG 58.005 29.630 0.34 0.00 37.89 3.16
1375 1566 9.805966 CAGAAATGAAAATGACATTGTGAAATG 57.194 29.630 0.34 0.00 37.89 2.32
1382 1573 7.589574 TGCATCAGAAATGAAAATGACATTG 57.410 32.000 0.34 0.00 37.89 2.82
1395 1586 8.621532 TTAGTTTACAGAGTTGCATCAGAAAT 57.378 30.769 0.00 0.00 0.00 2.17
1416 1607 9.978044 ACGTTTTAGAGACTTGAAACTATTAGT 57.022 29.630 0.00 0.00 31.58 2.24
1419 1610 9.543783 AGAACGTTTTAGAGACTTGAAACTATT 57.456 29.630 0.46 0.00 31.58 1.73
1437 1628 9.813446 CCCTCTGTAAACTAATATAGAACGTTT 57.187 33.333 0.46 0.00 0.00 3.60
1438 1629 9.193806 TCCCTCTGTAAACTAATATAGAACGTT 57.806 33.333 0.00 0.00 0.00 3.99
1439 1630 8.757982 TCCCTCTGTAAACTAATATAGAACGT 57.242 34.615 0.00 0.00 0.00 3.99
1440 1631 8.848182 ACTCCCTCTGTAAACTAATATAGAACG 58.152 37.037 0.00 0.00 0.00 3.95
1447 1638 8.255905 GCTTGTTACTCCCTCTGTAAACTAATA 58.744 37.037 0.00 0.00 32.58 0.98
1448 1639 7.104290 GCTTGTTACTCCCTCTGTAAACTAAT 58.896 38.462 0.00 0.00 32.58 1.73
1449 1640 6.042322 TGCTTGTTACTCCCTCTGTAAACTAA 59.958 38.462 0.00 0.00 32.58 2.24
1450 1641 5.541101 TGCTTGTTACTCCCTCTGTAAACTA 59.459 40.000 0.00 0.00 32.58 2.24
1451 1642 4.347000 TGCTTGTTACTCCCTCTGTAAACT 59.653 41.667 0.00 0.00 32.58 2.66
1452 1643 4.638304 TGCTTGTTACTCCCTCTGTAAAC 58.362 43.478 0.00 0.00 32.58 2.01
1453 1644 4.967084 TGCTTGTTACTCCCTCTGTAAA 57.033 40.909 0.00 0.00 32.58 2.01
1454 1645 4.504340 GGTTGCTTGTTACTCCCTCTGTAA 60.504 45.833 0.00 0.00 0.00 2.41
1455 1646 3.007614 GGTTGCTTGTTACTCCCTCTGTA 59.992 47.826 0.00 0.00 0.00 2.74
1456 1647 2.224548 GGTTGCTTGTTACTCCCTCTGT 60.225 50.000 0.00 0.00 0.00 3.41
1457 1648 2.039084 AGGTTGCTTGTTACTCCCTCTG 59.961 50.000 0.00 0.00 0.00 3.35
1458 1649 2.039084 CAGGTTGCTTGTTACTCCCTCT 59.961 50.000 0.00 0.00 0.00 3.69
1459 1650 2.427506 CAGGTTGCTTGTTACTCCCTC 58.572 52.381 0.00 0.00 0.00 4.30
1460 1651 1.545651 GCAGGTTGCTTGTTACTCCCT 60.546 52.381 0.00 0.00 40.96 4.20
1461 1652 0.881796 GCAGGTTGCTTGTTACTCCC 59.118 55.000 0.00 0.00 40.96 4.30
1462 1653 0.881796 GGCAGGTTGCTTGTTACTCC 59.118 55.000 0.67 0.00 44.28 3.85
1463 1654 0.881796 GGGCAGGTTGCTTGTTACTC 59.118 55.000 0.67 0.00 44.28 2.59
1464 1655 0.539669 GGGGCAGGTTGCTTGTTACT 60.540 55.000 0.67 0.00 44.28 2.24
1469 1660 2.993264 CCTGGGGCAGGTTGCTTG 60.993 66.667 0.67 0.00 45.82 4.01
1487 1678 2.287909 GCCGTTTTGTCATTTACTGCCA 60.288 45.455 0.00 0.00 0.00 4.92
1492 1683 3.561503 GGTGAGCCGTTTTGTCATTTAC 58.438 45.455 0.00 0.00 0.00 2.01
1497 1688 0.106918 AAGGGTGAGCCGTTTTGTCA 60.107 50.000 0.00 0.00 39.60 3.58
1549 1742 7.226523 CGAGTGAAACCATGGTAAATCATCATA 59.773 37.037 20.12 0.00 37.80 2.15
1550 1743 6.038603 CGAGTGAAACCATGGTAAATCATCAT 59.961 38.462 20.12 12.56 37.80 2.45
1613 1806 1.349026 ACAGTGAGGATGGACTTGGTG 59.651 52.381 0.00 0.00 0.00 4.17
1676 1869 3.985279 CGACCTTGACAAGAACGTTATCA 59.015 43.478 16.99 0.01 0.00 2.15
1709 1902 0.519961 GGATGGTAACGTTGTGTGGC 59.480 55.000 11.99 0.00 42.51 5.01
1712 1905 2.489971 CAGTGGATGGTAACGTTGTGT 58.510 47.619 11.99 0.00 42.51 3.72
2021 2221 6.073602 ACGTATGTGTGCTGCATAAATATGAG 60.074 38.462 26.13 16.47 35.75 2.90
2063 2315 6.718454 CCTTACTCCATGCCTGATTATGATTT 59.282 38.462 0.00 0.00 0.00 2.17
2082 2334 1.065418 CCTGTCCGGATTTGCCTTACT 60.065 52.381 7.81 0.00 33.16 2.24
2100 2352 1.511613 CTGGTCCATCATACCACCCT 58.488 55.000 0.00 0.00 42.10 4.34
2109 2361 3.111484 TGTAATGTAGGCTGGTCCATCA 58.889 45.455 0.00 0.00 37.29 3.07
2431 2683 1.134946 GCATGGCCTGGTTCATTACAC 59.865 52.381 3.32 0.00 0.00 2.90
2438 2690 1.098050 CTAGTTGCATGGCCTGGTTC 58.902 55.000 3.32 0.00 0.00 3.62
2474 2726 4.212716 CATTGATGGTGTGGGAATCAGAT 58.787 43.478 0.00 0.00 32.23 2.90
2584 2836 9.077885 AGCAGTTTTTCACTCTATAATGGAAAA 57.922 29.630 0.00 0.00 36.13 2.29
2592 2845 6.013725 TCAGGGAAGCAGTTTTTCACTCTATA 60.014 38.462 0.00 0.00 36.18 1.31
2600 2853 4.853924 TTCATCAGGGAAGCAGTTTTTC 57.146 40.909 0.00 0.00 0.00 2.29
2612 2865 5.840243 TCTGCATAAAACATTCATCAGGG 57.160 39.130 0.00 0.00 0.00 4.45
2705 2958 3.947834 CCGGCAATCTTGAAGAATAGGTT 59.052 43.478 0.00 0.00 0.00 3.50
2858 3111 2.558575 CCAGGAAGGGAGAGACTGAGAA 60.559 54.545 0.00 0.00 0.00 2.87
2908 3161 2.358615 TGCAAGGTAGCAGTGCCG 60.359 61.111 12.58 0.00 40.11 5.69
2931 3184 2.806745 GCTGTGGCAGAGACAGTGTTAA 60.807 50.000 16.83 0.00 42.47 2.01
2995 3248 5.737757 CGACTCAGAGAATTTTGATGCAATG 59.262 40.000 3.79 0.00 0.00 2.82
3025 3278 3.731295 CTCCTTCGAGTTGAGGCTC 57.269 57.895 7.79 7.79 0.00 4.70
3037 3290 1.282157 ACATTGGCTGGGTACTCCTTC 59.718 52.381 0.00 0.00 36.20 3.46
3346 3599 3.467483 TCCCTGTATCCTGGAGTATGACT 59.533 47.826 1.52 0.00 31.55 3.41
3428 3681 2.089201 GTTGTAATTCCCAACTCCCCG 58.911 52.381 11.66 0.00 39.24 5.73
3511 3764 1.306141 TGTCCAGCCTCCAGTAGGG 60.306 63.158 0.00 0.00 46.65 3.53
3538 3791 0.038744 CTGGGTTGTCTGCCCTGAAT 59.961 55.000 1.85 0.00 46.22 2.57
3579 3832 9.381038 AGCAGTAGGGTATTATTATCTGAAGAA 57.619 33.333 0.00 0.00 0.00 2.52
3580 3833 8.958060 AGCAGTAGGGTATTATTATCTGAAGA 57.042 34.615 0.00 0.00 0.00 2.87
3581 3834 9.646427 GAAGCAGTAGGGTATTATTATCTGAAG 57.354 37.037 0.00 0.00 0.00 3.02
3582 3835 8.594550 GGAAGCAGTAGGGTATTATTATCTGAA 58.405 37.037 0.00 0.00 0.00 3.02
3583 3836 7.956315 AGGAAGCAGTAGGGTATTATTATCTGA 59.044 37.037 0.00 0.00 0.00 3.27
3584 3837 8.140112 AGGAAGCAGTAGGGTATTATTATCTG 57.860 38.462 0.00 0.00 0.00 2.90
3585 3838 9.839185 TTAGGAAGCAGTAGGGTATTATTATCT 57.161 33.333 0.00 0.00 0.00 1.98
3589 3842 8.218488 CCTTTTAGGAAGCAGTAGGGTATTATT 58.782 37.037 0.00 0.00 37.67 1.40
3590 3843 7.571357 TCCTTTTAGGAAGCAGTAGGGTATTAT 59.429 37.037 0.00 0.00 42.51 1.28
3591 3844 6.904654 TCCTTTTAGGAAGCAGTAGGGTATTA 59.095 38.462 0.00 0.00 42.51 0.98
3592 3845 5.729718 TCCTTTTAGGAAGCAGTAGGGTATT 59.270 40.000 0.00 0.00 42.51 1.89
3593 3846 5.286221 TCCTTTTAGGAAGCAGTAGGGTAT 58.714 41.667 0.00 0.00 42.51 2.73
3607 3860 8.960591 ACAACATATCAATCAACTCCTTTTAGG 58.039 33.333 0.00 0.00 36.46 2.69
3611 3864 8.181904 ACAACAACATATCAATCAACTCCTTT 57.818 30.769 0.00 0.00 0.00 3.11
3621 3874 8.906867 CCTGGAATAGAACAACAACATATCAAT 58.093 33.333 0.00 0.00 0.00 2.57
3628 3881 4.578516 CACACCTGGAATAGAACAACAACA 59.421 41.667 0.00 0.00 0.00 3.33
3629 3882 4.578928 ACACACCTGGAATAGAACAACAAC 59.421 41.667 0.00 0.00 0.00 3.32
3630 3883 4.578516 CACACACCTGGAATAGAACAACAA 59.421 41.667 0.00 0.00 0.00 2.83
3711 3964 1.165270 GTCCTTTCCCATTGTCCACG 58.835 55.000 0.00 0.00 0.00 4.94
3727 3980 5.068067 GTGGAATTAGAGTCTCACTAGGTCC 59.932 48.000 0.00 2.06 0.00 4.46
3735 3988 2.838202 GGGTGGTGGAATTAGAGTCTCA 59.162 50.000 0.00 0.00 0.00 3.27
3791 4044 6.605471 TTTTGAGCTGGACTAAGTCTGATA 57.395 37.500 0.00 0.00 32.47 2.15
3793 4046 4.955811 TTTTGAGCTGGACTAAGTCTGA 57.044 40.909 0.00 0.00 32.47 3.27
3822 4303 3.340034 TCACCAACGTTGAAGTTTCAGT 58.660 40.909 29.35 12.82 38.61 3.41
3837 4318 2.147958 GCACACCGAGTAAATCACCAA 58.852 47.619 0.00 0.00 0.00 3.67
3924 4633 8.301252 TGTCTTTTGCTCCTGTATACACTATA 57.699 34.615 0.08 0.00 0.00 1.31
4009 4720 5.565592 TGTGAATGCCAACAGATACAATC 57.434 39.130 0.00 0.00 0.00 2.67
4017 4728 5.231702 TCAAATTCATGTGAATGCCAACAG 58.768 37.500 8.86 0.00 43.41 3.16
4027 4738 7.764141 TTCTCCAATTCTCAAATTCATGTGA 57.236 32.000 0.00 0.00 32.69 3.58
4076 4788 5.242434 ACAACACCACTTCTTATTGCGATA 58.758 37.500 0.00 0.00 0.00 2.92
4077 4789 4.072131 ACAACACCACTTCTTATTGCGAT 58.928 39.130 0.00 0.00 0.00 4.58
4078 4790 3.472652 ACAACACCACTTCTTATTGCGA 58.527 40.909 0.00 0.00 0.00 5.10
4080 4792 6.204882 ACTTCTACAACACCACTTCTTATTGC 59.795 38.462 0.00 0.00 0.00 3.56
4081 4793 7.441157 TGACTTCTACAACACCACTTCTTATTG 59.559 37.037 0.00 0.00 0.00 1.90
4087 4800 3.495001 GCTGACTTCTACAACACCACTTC 59.505 47.826 0.00 0.00 0.00 3.01
4090 4803 2.802816 CAGCTGACTTCTACAACACCAC 59.197 50.000 8.42 0.00 0.00 4.16
4098 4811 5.966503 CAGTTATACGTCAGCTGACTTCTAC 59.033 44.000 36.78 27.07 42.66 2.59
4105 4818 7.602644 AGAAAAATTCAGTTATACGTCAGCTGA 59.397 33.333 13.74 13.74 34.80 4.26
4111 4824 8.922676 TCTGTCAGAAAAATTCAGTTATACGTC 58.077 33.333 0.00 0.00 0.00 4.34
4140 4853 7.660208 ACGAGTTAGGAATGTGTTCTTAATGTT 59.340 33.333 0.00 0.00 37.94 2.71
4243 4957 9.406931 GACATTCGTCTTCTTTTCTGGAAGAGC 62.407 44.444 6.43 2.62 46.30 4.09
4343 5059 3.442977 AGATTGATTTGAGCAGGAGCAAC 59.557 43.478 0.00 0.00 45.49 4.17
4616 5349 2.300967 ATGCTCGAAGGGGGCTTGA 61.301 57.895 0.00 0.00 0.00 3.02
4639 5372 2.666207 CGAACATCCCCCAACGGA 59.334 61.111 0.00 0.00 36.02 4.69
4662 5395 1.535930 TAGTGGCGTGGTGGGGTTA 60.536 57.895 0.00 0.00 0.00 2.85
4742 5497 3.442625 CCATACGAGTTCGGCTATATGGA 59.557 47.826 17.31 0.00 43.05 3.41
4743 5498 3.770666 CCATACGAGTTCGGCTATATGG 58.229 50.000 11.87 11.87 44.95 2.74
4746 5501 1.542915 GGCCATACGAGTTCGGCTATA 59.457 52.381 0.00 0.00 44.27 1.31


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.