Multiple sequence alignment - TraesCS4B01G136900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G136900 chr4B 100.000 3594 0 0 1 3594 180562485 180558892 0.000000e+00 6637
1 TraesCS4B01G136900 chr4A 91.623 1158 61 13 1225 2361 455272527 455273669 0.000000e+00 1568
2 TraesCS4B01G136900 chr4A 91.529 850 31 19 391 1224 455271651 455272475 0.000000e+00 1133
3 TraesCS4B01G136900 chr4A 98.667 150 2 0 2483 2632 455273658 455273807 2.130000e-67 267
4 TraesCS4B01G136900 chr4A 92.913 127 5 2 180 304 455271516 455271640 7.930000e-42 182
5 TraesCS4B01G136900 chr4D 91.588 1165 45 16 1226 2361 118374316 118373176 0.000000e+00 1559
6 TraesCS4B01G136900 chr4D 91.439 841 36 19 394 1224 118375276 118374462 0.000000e+00 1122
7 TraesCS4B01G136900 chr4D 90.076 524 34 2 1838 2349 114197694 114198211 0.000000e+00 664
8 TraesCS4B01G136900 chr4D 96.599 147 5 0 2486 2632 118373184 118373038 9.970000e-61 244
9 TraesCS4B01G136900 chr4D 88.000 175 13 3 1 167 394957073 394956899 2.190000e-47 200
10 TraesCS4B01G136900 chr4D 93.939 99 4 2 2535 2632 114211610 114211707 8.040000e-32 148
11 TraesCS4B01G136900 chr6D 90.743 767 22 10 2635 3363 446747873 446748628 0.000000e+00 977
12 TraesCS4B01G136900 chr6D 95.906 171 7 0 3424 3594 446748995 446749165 9.830000e-71 278
13 TraesCS4B01G136900 chr6D 86.857 175 15 3 1 167 134278310 134278136 4.740000e-44 189
14 TraesCS4B01G136900 chr6D 86.932 176 14 4 1 167 443748328 443748503 4.740000e-44 189
15 TraesCS4B01G136900 chr6D 90.625 96 7 2 2391 2485 6519499 6519593 3.770000e-25 126
16 TraesCS4B01G136900 chr3B 89.280 653 27 10 2632 3253 810286126 810286766 0.000000e+00 778
17 TraesCS4B01G136900 chr3B 95.322 171 7 1 3424 3594 810287109 810287278 1.640000e-68 270
18 TraesCS4B01G136900 chr3B 94.444 90 5 0 2395 2484 14462512 14462423 4.840000e-29 139
19 TraesCS4B01G136900 chr3B 94.805 77 4 0 3350 3426 810286987 810287063 1.750000e-23 121
20 TraesCS4B01G136900 chr7B 98.361 122 2 0 2363 2484 484589862 484589983 7.820000e-52 215
21 TraesCS4B01G136900 chr2D 89.595 173 10 3 3 167 68622827 68622655 2.810000e-51 213
22 TraesCS4B01G136900 chr2D 87.861 173 13 3 3 167 68563522 68563350 2.830000e-46 196
23 TraesCS4B01G136900 chr2D 87.861 173 13 3 3 167 68585675 68585503 2.830000e-46 196
24 TraesCS4B01G136900 chr1A 89.143 175 11 3 1 167 588136094 588135920 1.010000e-50 211
25 TraesCS4B01G136900 chr1A 84.393 173 19 2 3 167 257408785 257408613 2.870000e-36 163
26 TraesCS4B01G136900 chr1A 83.871 124 18 2 2362 2484 498160564 498160442 2.270000e-22 117
27 TraesCS4B01G136900 chr5D 89.080 174 11 2 3 168 330766303 330766130 3.640000e-50 209
28 TraesCS4B01G136900 chr5D 93.827 81 5 0 1248 1328 246303545 246303625 4.870000e-24 122
29 TraesCS4B01G136900 chr7D 87.356 174 14 2 2 167 179119200 179119027 3.660000e-45 193
30 TraesCS4B01G136900 chr7D 91.870 123 9 1 2362 2484 634071081 634071202 1.720000e-38 171
31 TraesCS4B01G136900 chr5B 96.429 112 4 0 2373 2484 680998715 680998604 6.130000e-43 185
32 TraesCS4B01G136900 chr5B 93.827 81 5 0 1248 1328 280987834 280987914 4.870000e-24 122
33 TraesCS4B01G136900 chr2B 93.600 125 6 2 2361 2484 745041781 745041658 6.130000e-43 185
34 TraesCS4B01G136900 chr6B 91.870 123 10 0 2362 2484 476732857 476732979 4.770000e-39 172
35 TraesCS4B01G136900 chr1B 90.244 123 11 1 2362 2484 565973308 565973187 3.710000e-35 159
36 TraesCS4B01G136900 chr5A 93.827 81 5 0 1248 1328 330199621 330199701 4.870000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G136900 chr4B 180558892 180562485 3593 True 6637.000000 6637 100.000000 1 3594 1 chr4B.!!$R1 3593
1 TraesCS4B01G136900 chr4A 455271516 455273807 2291 False 787.500000 1568 93.683000 180 2632 4 chr4A.!!$F1 2452
2 TraesCS4B01G136900 chr4D 118373038 118375276 2238 True 975.000000 1559 93.208667 394 2632 3 chr4D.!!$R2 2238
3 TraesCS4B01G136900 chr4D 114197694 114198211 517 False 664.000000 664 90.076000 1838 2349 1 chr4D.!!$F1 511
4 TraesCS4B01G136900 chr6D 446747873 446749165 1292 False 627.500000 977 93.324500 2635 3594 2 chr6D.!!$F3 959
5 TraesCS4B01G136900 chr3B 810286126 810287278 1152 False 389.666667 778 93.135667 2632 3594 3 chr3B.!!$F1 962

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.033208 TTGCTTCCATAGGGCCCAAG 60.033 55.0 27.56 19.36 0.00 3.61 F
138 139 0.033208 CTTCCATAGGGCCCAAGCAA 60.033 55.0 27.56 8.81 42.56 3.91 F
298 301 0.036765 GGACCCAGCGATTGTACACA 60.037 55.0 0.00 0.00 0.00 3.72 F
1372 1537 0.095417 GCATCGTCGTCTTTTCCTGC 59.905 55.0 0.00 0.00 0.00 4.85 F
2444 2652 0.034767 ATCAGGCCCACATGTCAGTG 60.035 55.0 0.00 0.00 39.21 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2085 2281 0.036164 AGTTGTAGCGGTTCATGGCA 59.964 50.000 0.00 0.0 0.00 4.92 R
2299 2507 5.836024 AGGGATAGAGACAGTCTAGTAGG 57.164 47.826 2.00 0.0 41.28 3.18 R
2425 2633 0.034767 CACTGACATGTGGGCCTGAT 60.035 55.000 1.15 0.0 34.56 2.90 R
2471 2679 0.106967 CCCTTTAGAAGCAGCTCCCC 60.107 60.000 0.00 0.0 0.00 4.81 R
3486 4174 1.685765 TCCTGAGCGTAGGCATGGT 60.686 57.895 10.48 0.0 43.41 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.500509 GATCTAGAGCACCAACTCCG 57.499 55.000 2.36 0.00 37.39 4.63
20 21 0.461961 ATCTAGAGCACCAACTCCGC 59.538 55.000 0.00 0.00 37.39 5.54
21 22 1.153549 CTAGAGCACCAACTCCGCC 60.154 63.158 0.00 0.00 37.39 6.13
22 23 1.608717 CTAGAGCACCAACTCCGCCT 61.609 60.000 0.00 0.00 37.39 5.52
23 24 0.323999 TAGAGCACCAACTCCGCCTA 60.324 55.000 0.00 0.00 37.39 3.93
24 25 1.153549 GAGCACCAACTCCGCCTAG 60.154 63.158 0.00 0.00 0.00 3.02
25 26 1.889530 GAGCACCAACTCCGCCTAGT 61.890 60.000 0.00 0.00 0.00 2.57
26 27 1.741770 GCACCAACTCCGCCTAGTG 60.742 63.158 0.00 0.00 0.00 2.74
27 28 1.741770 CACCAACTCCGCCTAGTGC 60.742 63.158 0.00 0.00 0.00 4.40
36 37 3.787001 GCCTAGTGCGGCCTTCCT 61.787 66.667 0.00 0.00 44.41 3.36
37 38 2.501610 CCTAGTGCGGCCTTCCTC 59.498 66.667 0.00 0.00 0.00 3.71
38 39 2.501610 CTAGTGCGGCCTTCCTCC 59.498 66.667 0.00 0.00 0.00 4.30
39 40 2.284331 TAGTGCGGCCTTCCTCCA 60.284 61.111 0.00 0.00 0.00 3.86
40 41 1.899437 CTAGTGCGGCCTTCCTCCAA 61.899 60.000 0.00 0.00 0.00 3.53
41 42 1.271840 TAGTGCGGCCTTCCTCCAAT 61.272 55.000 0.00 0.00 0.00 3.16
42 43 2.115291 GTGCGGCCTTCCTCCAATC 61.115 63.158 0.00 0.00 0.00 2.67
43 44 2.272146 GCGGCCTTCCTCCAATCA 59.728 61.111 0.00 0.00 0.00 2.57
44 45 1.152881 GCGGCCTTCCTCCAATCAT 60.153 57.895 0.00 0.00 0.00 2.45
45 46 1.169034 GCGGCCTTCCTCCAATCATC 61.169 60.000 0.00 0.00 0.00 2.92
46 47 0.471617 CGGCCTTCCTCCAATCATCT 59.528 55.000 0.00 0.00 0.00 2.90
47 48 1.694150 CGGCCTTCCTCCAATCATCTA 59.306 52.381 0.00 0.00 0.00 1.98
48 49 2.304180 CGGCCTTCCTCCAATCATCTAT 59.696 50.000 0.00 0.00 0.00 1.98
49 50 3.618507 CGGCCTTCCTCCAATCATCTATC 60.619 52.174 0.00 0.00 0.00 2.08
50 51 3.586618 GGCCTTCCTCCAATCATCTATCT 59.413 47.826 0.00 0.00 0.00 1.98
51 52 4.323409 GGCCTTCCTCCAATCATCTATCTC 60.323 50.000 0.00 0.00 0.00 2.75
52 53 4.285517 GCCTTCCTCCAATCATCTATCTCA 59.714 45.833 0.00 0.00 0.00 3.27
53 54 5.045724 GCCTTCCTCCAATCATCTATCTCAT 60.046 44.000 0.00 0.00 0.00 2.90
54 55 6.642430 CCTTCCTCCAATCATCTATCTCATC 58.358 44.000 0.00 0.00 0.00 2.92
55 56 6.441284 CCTTCCTCCAATCATCTATCTCATCT 59.559 42.308 0.00 0.00 0.00 2.90
56 57 7.618907 CCTTCCTCCAATCATCTATCTCATCTA 59.381 40.741 0.00 0.00 0.00 1.98
57 58 8.592529 TTCCTCCAATCATCTATCTCATCTAG 57.407 38.462 0.00 0.00 0.00 2.43
58 59 7.124721 TCCTCCAATCATCTATCTCATCTAGG 58.875 42.308 0.00 0.00 0.00 3.02
59 60 7.036279 TCCTCCAATCATCTATCTCATCTAGGA 60.036 40.741 0.00 0.00 0.00 2.94
60 61 7.785985 CCTCCAATCATCTATCTCATCTAGGAT 59.214 40.741 0.00 0.00 0.00 3.24
61 62 8.765488 TCCAATCATCTATCTCATCTAGGATC 57.235 38.462 0.00 0.00 0.00 3.36
62 63 8.567851 TCCAATCATCTATCTCATCTAGGATCT 58.432 37.037 0.00 0.00 0.00 2.75
63 64 8.853126 CCAATCATCTATCTCATCTAGGATCTC 58.147 40.741 0.00 0.00 0.00 2.75
64 65 9.636789 CAATCATCTATCTCATCTAGGATCTCT 57.363 37.037 0.00 0.00 0.00 3.10
65 66 9.636789 AATCATCTATCTCATCTAGGATCTCTG 57.363 37.037 0.00 0.00 0.00 3.35
66 67 8.161640 TCATCTATCTCATCTAGGATCTCTGT 57.838 38.462 0.00 0.00 0.00 3.41
67 68 8.267183 TCATCTATCTCATCTAGGATCTCTGTC 58.733 40.741 0.00 0.00 0.00 3.51
68 69 7.813087 TCTATCTCATCTAGGATCTCTGTCT 57.187 40.000 0.00 0.00 0.00 3.41
69 70 8.218423 TCTATCTCATCTAGGATCTCTGTCTT 57.782 38.462 0.00 0.00 0.00 3.01
70 71 9.332713 TCTATCTCATCTAGGATCTCTGTCTTA 57.667 37.037 0.00 0.00 0.00 2.10
71 72 9.958180 CTATCTCATCTAGGATCTCTGTCTTAA 57.042 37.037 0.00 0.00 0.00 1.85
72 73 8.868522 ATCTCATCTAGGATCTCTGTCTTAAG 57.131 38.462 0.00 0.00 0.00 1.85
73 74 7.811282 TCTCATCTAGGATCTCTGTCTTAAGT 58.189 38.462 1.63 0.00 0.00 2.24
74 75 8.278639 TCTCATCTAGGATCTCTGTCTTAAGTT 58.721 37.037 1.63 0.00 0.00 2.66
75 76 8.231692 TCATCTAGGATCTCTGTCTTAAGTTG 57.768 38.462 1.63 0.00 0.00 3.16
76 77 6.458232 TCTAGGATCTCTGTCTTAAGTTGC 57.542 41.667 1.63 0.00 0.00 4.17
77 78 4.116747 AGGATCTCTGTCTTAAGTTGCG 57.883 45.455 1.63 0.00 0.00 4.85
78 79 2.605366 GGATCTCTGTCTTAAGTTGCGC 59.395 50.000 0.00 0.00 0.00 6.09
79 80 2.812358 TCTCTGTCTTAAGTTGCGCA 57.188 45.000 5.66 5.66 0.00 6.09
80 81 2.677199 TCTCTGTCTTAAGTTGCGCAG 58.323 47.619 11.31 0.00 0.00 5.18
93 94 3.736483 CGCAGCCGATATTTGCCT 58.264 55.556 0.00 0.00 36.29 4.75
94 95 1.571460 CGCAGCCGATATTTGCCTC 59.429 57.895 0.00 0.00 36.29 4.70
95 96 1.571460 GCAGCCGATATTTGCCTCG 59.429 57.895 0.00 0.00 34.73 4.63
96 97 0.880278 GCAGCCGATATTTGCCTCGA 60.880 55.000 0.00 0.00 37.05 4.04
97 98 1.581934 CAGCCGATATTTGCCTCGAA 58.418 50.000 0.00 0.00 37.05 3.71
98 99 1.939934 CAGCCGATATTTGCCTCGAAA 59.060 47.619 0.00 0.00 37.05 3.46
99 100 1.940613 AGCCGATATTTGCCTCGAAAC 59.059 47.619 0.00 0.00 37.05 2.78
100 101 1.668751 GCCGATATTTGCCTCGAAACA 59.331 47.619 0.00 0.00 37.05 2.83
101 102 2.290641 GCCGATATTTGCCTCGAAACAT 59.709 45.455 0.00 0.00 37.05 2.71
102 103 3.243068 GCCGATATTTGCCTCGAAACATT 60.243 43.478 0.00 0.00 37.05 2.71
103 104 4.282068 CCGATATTTGCCTCGAAACATTG 58.718 43.478 0.00 0.00 37.05 2.82
104 105 4.201910 CCGATATTTGCCTCGAAACATTGT 60.202 41.667 0.00 0.00 37.05 2.71
105 106 5.331902 CGATATTTGCCTCGAAACATTGTT 58.668 37.500 0.00 0.00 37.05 2.83
106 107 5.227805 CGATATTTGCCTCGAAACATTGTTG 59.772 40.000 2.13 0.00 37.05 3.33
107 108 4.582701 ATTTGCCTCGAAACATTGTTGA 57.417 36.364 2.13 0.00 0.00 3.18
108 109 4.377839 TTTGCCTCGAAACATTGTTGAA 57.622 36.364 2.13 0.00 0.00 2.69
109 110 3.347958 TGCCTCGAAACATTGTTGAAC 57.652 42.857 2.13 0.00 0.00 3.18
110 111 2.286713 TGCCTCGAAACATTGTTGAACG 60.287 45.455 2.13 9.65 0.00 3.95
111 112 2.307049 CCTCGAAACATTGTTGAACGC 58.693 47.619 2.13 0.00 0.00 4.84
112 113 1.962547 CTCGAAACATTGTTGAACGCG 59.037 47.619 3.53 3.53 0.00 6.01
113 114 0.425656 CGAAACATTGTTGAACGCGC 59.574 50.000 5.73 0.00 0.00 6.86
114 115 0.775861 GAAACATTGTTGAACGCGCC 59.224 50.000 5.73 0.00 0.00 6.53
115 116 0.932585 AAACATTGTTGAACGCGCCG 60.933 50.000 5.73 0.00 0.00 6.46
116 117 2.054140 AACATTGTTGAACGCGCCGT 62.054 50.000 5.73 0.00 43.97 5.68
126 127 3.192230 CGCGCCGTTGCTTCCATA 61.192 61.111 0.00 0.00 34.43 2.74
127 128 2.709475 GCGCCGTTGCTTCCATAG 59.291 61.111 0.00 0.00 34.43 2.23
128 129 2.823829 GCGCCGTTGCTTCCATAGG 61.824 63.158 0.00 0.00 34.43 2.57
129 130 2.180204 CGCCGTTGCTTCCATAGGG 61.180 63.158 0.00 0.00 34.43 3.53
130 131 2.481471 GCCGTTGCTTCCATAGGGC 61.481 63.158 0.00 0.00 33.53 5.19
131 132 1.823899 CCGTTGCTTCCATAGGGCC 60.824 63.158 0.00 0.00 0.00 5.80
132 133 1.823899 CGTTGCTTCCATAGGGCCC 60.824 63.158 16.46 16.46 0.00 5.80
133 134 1.306296 GTTGCTTCCATAGGGCCCA 59.694 57.895 27.56 10.89 0.00 5.36
134 135 0.324275 GTTGCTTCCATAGGGCCCAA 60.324 55.000 27.56 8.11 0.00 4.12
135 136 0.033208 TTGCTTCCATAGGGCCCAAG 60.033 55.000 27.56 19.36 0.00 3.61
136 137 1.829970 GCTTCCATAGGGCCCAAGC 60.830 63.158 27.56 25.22 35.26 4.01
137 138 1.614711 CTTCCATAGGGCCCAAGCA 59.385 57.895 27.56 6.16 42.56 3.91
138 139 0.033208 CTTCCATAGGGCCCAAGCAA 60.033 55.000 27.56 8.81 42.56 3.91
139 140 0.636101 TTCCATAGGGCCCAAGCAAT 59.364 50.000 27.56 3.89 42.56 3.56
140 141 0.636101 TCCATAGGGCCCAAGCAATT 59.364 50.000 27.56 2.98 42.56 2.32
141 142 1.856259 TCCATAGGGCCCAAGCAATTA 59.144 47.619 27.56 5.71 42.56 1.40
142 143 2.158475 TCCATAGGGCCCAAGCAATTAG 60.158 50.000 27.56 2.14 42.56 1.73
143 144 2.242043 CATAGGGCCCAAGCAATTAGG 58.758 52.381 27.56 2.97 42.56 2.69
144 145 1.602440 TAGGGCCCAAGCAATTAGGA 58.398 50.000 27.56 0.00 42.56 2.94
145 146 0.936691 AGGGCCCAAGCAATTAGGAT 59.063 50.000 27.56 0.00 42.56 3.24
146 147 1.133356 AGGGCCCAAGCAATTAGGATC 60.133 52.381 27.56 0.00 42.56 3.36
147 148 1.411501 GGGCCCAAGCAATTAGGATCA 60.412 52.381 19.95 0.00 42.56 2.92
148 149 2.601905 GGCCCAAGCAATTAGGATCAT 58.398 47.619 0.00 0.00 42.56 2.45
149 150 2.298163 GGCCCAAGCAATTAGGATCATG 59.702 50.000 0.00 0.00 42.56 3.07
150 151 3.225104 GCCCAAGCAATTAGGATCATGA 58.775 45.455 0.00 0.00 39.53 3.07
151 152 3.830755 GCCCAAGCAATTAGGATCATGAT 59.169 43.478 8.25 8.25 39.53 2.45
152 153 4.321750 GCCCAAGCAATTAGGATCATGATG 60.322 45.833 14.30 0.00 39.53 3.07
153 154 4.219944 CCCAAGCAATTAGGATCATGATGG 59.780 45.833 14.30 4.73 0.00 3.51
154 155 5.074804 CCAAGCAATTAGGATCATGATGGA 58.925 41.667 14.30 0.00 0.00 3.41
155 156 5.183331 CCAAGCAATTAGGATCATGATGGAG 59.817 44.000 14.30 0.00 0.00 3.86
156 157 5.579753 AGCAATTAGGATCATGATGGAGT 57.420 39.130 14.30 0.00 0.00 3.85
157 158 5.558818 AGCAATTAGGATCATGATGGAGTC 58.441 41.667 14.30 0.00 0.00 3.36
158 159 4.391216 GCAATTAGGATCATGATGGAGTCG 59.609 45.833 14.30 0.00 0.00 4.18
159 160 5.787380 CAATTAGGATCATGATGGAGTCGA 58.213 41.667 14.30 0.00 0.00 4.20
160 161 6.226052 CAATTAGGATCATGATGGAGTCGAA 58.774 40.000 14.30 0.00 0.00 3.71
161 162 6.617782 ATTAGGATCATGATGGAGTCGAAT 57.382 37.500 14.30 0.17 0.00 3.34
162 163 4.533919 AGGATCATGATGGAGTCGAATC 57.466 45.455 14.30 3.82 0.00 2.52
163 164 4.158786 AGGATCATGATGGAGTCGAATCT 58.841 43.478 14.30 0.00 0.00 2.40
164 165 4.592351 AGGATCATGATGGAGTCGAATCTT 59.408 41.667 14.30 0.53 0.00 2.40
165 166 4.928615 GGATCATGATGGAGTCGAATCTTC 59.071 45.833 14.30 10.53 0.00 2.87
166 167 5.279406 GGATCATGATGGAGTCGAATCTTCT 60.279 44.000 14.30 0.00 0.00 2.85
167 168 5.193663 TCATGATGGAGTCGAATCTTCTC 57.806 43.478 13.18 7.70 0.00 2.87
168 169 4.646492 TCATGATGGAGTCGAATCTTCTCA 59.354 41.667 13.18 12.69 0.00 3.27
169 170 4.645762 TGATGGAGTCGAATCTTCTCAG 57.354 45.455 13.18 0.00 0.00 3.35
170 171 3.382865 TGATGGAGTCGAATCTTCTCAGG 59.617 47.826 13.18 0.00 0.00 3.86
171 172 2.808919 TGGAGTCGAATCTTCTCAGGT 58.191 47.619 13.18 0.00 0.00 4.00
172 173 2.755655 TGGAGTCGAATCTTCTCAGGTC 59.244 50.000 13.18 0.00 0.00 3.85
173 174 2.100087 GGAGTCGAATCTTCTCAGGTCC 59.900 54.545 13.18 0.00 0.00 4.46
174 175 1.746220 AGTCGAATCTTCTCAGGTCCG 59.254 52.381 0.00 0.00 0.00 4.79
175 176 0.456221 TCGAATCTTCTCAGGTCCGC 59.544 55.000 0.00 0.00 0.00 5.54
176 177 0.173481 CGAATCTTCTCAGGTCCGCA 59.827 55.000 0.00 0.00 0.00 5.69
177 178 1.646189 GAATCTTCTCAGGTCCGCAC 58.354 55.000 0.00 0.00 0.00 5.34
178 179 1.205893 GAATCTTCTCAGGTCCGCACT 59.794 52.381 0.00 0.00 0.00 4.40
276 279 2.159653 GCTTGTGATGTACCGCTTCTTG 60.160 50.000 0.00 0.00 0.00 3.02
286 289 0.108138 CCGCTTCTTGTAGGACCCAG 60.108 60.000 0.00 0.00 0.00 4.45
293 296 0.981183 TTGTAGGACCCAGCGATTGT 59.019 50.000 0.00 0.00 0.00 2.71
298 301 0.036765 GGACCCAGCGATTGTACACA 60.037 55.000 0.00 0.00 0.00 3.72
299 302 1.076332 GACCCAGCGATTGTACACAC 58.924 55.000 0.00 0.00 0.00 3.82
300 303 0.685097 ACCCAGCGATTGTACACACT 59.315 50.000 0.00 0.00 0.00 3.55
301 304 1.897133 ACCCAGCGATTGTACACACTA 59.103 47.619 0.00 0.00 0.00 2.74
302 305 2.094182 ACCCAGCGATTGTACACACTAG 60.094 50.000 0.00 0.00 0.00 2.57
303 306 2.094182 CCCAGCGATTGTACACACTAGT 60.094 50.000 0.00 0.00 0.00 2.57
304 307 3.129813 CCCAGCGATTGTACACACTAGTA 59.870 47.826 0.00 0.00 0.00 1.82
305 308 4.352039 CCAGCGATTGTACACACTAGTAG 58.648 47.826 0.00 0.00 0.00 2.57
306 309 4.142447 CCAGCGATTGTACACACTAGTAGT 60.142 45.833 0.00 0.00 0.00 2.73
352 355 6.699895 CACTAGTAGTGCATTACGTGAAAA 57.300 37.500 17.11 0.00 39.62 2.29
353 356 6.522761 CACTAGTAGTGCATTACGTGAAAAC 58.477 40.000 17.11 0.00 39.62 2.43
354 357 6.365247 CACTAGTAGTGCATTACGTGAAAACT 59.635 38.462 17.11 2.81 39.62 2.66
355 358 5.840940 AGTAGTGCATTACGTGAAAACTC 57.159 39.130 13.05 0.00 0.00 3.01
356 359 5.294356 AGTAGTGCATTACGTGAAAACTCA 58.706 37.500 13.05 0.00 0.00 3.41
357 360 5.932303 AGTAGTGCATTACGTGAAAACTCAT 59.068 36.000 13.05 0.00 0.00 2.90
358 361 5.034554 AGTGCATTACGTGAAAACTCATG 57.965 39.130 0.00 0.00 0.00 3.07
359 362 3.603770 GTGCATTACGTGAAAACTCATGC 59.396 43.478 0.00 0.00 0.00 4.06
360 363 3.251972 TGCATTACGTGAAAACTCATGCA 59.748 39.130 0.00 0.00 39.74 3.96
361 364 4.225984 GCATTACGTGAAAACTCATGCAA 58.774 39.130 0.00 0.00 33.25 4.08
362 365 4.858692 GCATTACGTGAAAACTCATGCAAT 59.141 37.500 0.00 0.00 33.25 3.56
363 366 5.003778 GCATTACGTGAAAACTCATGCAATC 59.996 40.000 0.00 0.00 33.25 2.67
364 367 5.940192 TTACGTGAAAACTCATGCAATCT 57.060 34.783 0.00 0.00 0.00 2.40
365 368 4.410492 ACGTGAAAACTCATGCAATCTC 57.590 40.909 0.00 0.00 0.00 2.75
366 369 4.067896 ACGTGAAAACTCATGCAATCTCT 58.932 39.130 0.00 0.00 0.00 3.10
367 370 4.516698 ACGTGAAAACTCATGCAATCTCTT 59.483 37.500 0.00 0.00 0.00 2.85
368 371 5.009010 ACGTGAAAACTCATGCAATCTCTTT 59.991 36.000 0.00 0.00 0.00 2.52
369 372 5.916883 CGTGAAAACTCATGCAATCTCTTTT 59.083 36.000 0.00 0.00 0.00 2.27
370 373 6.418819 CGTGAAAACTCATGCAATCTCTTTTT 59.581 34.615 0.00 0.00 0.00 1.94
459 462 1.714794 CAAGGACGTAGCTGGACTTG 58.285 55.000 0.00 5.60 0.00 3.16
559 569 0.599204 GTCAGAACGGGCGACTTTGA 60.599 55.000 0.00 0.00 0.00 2.69
638 649 6.923670 TGTCCTTCTCTCCTTAGGTATACAT 58.076 40.000 5.01 0.00 0.00 2.29
673 685 8.932791 CATGTACTGTAAAGTGTAAAGGTTAGG 58.067 37.037 0.00 0.00 0.00 2.69
800 820 4.801624 CACGCGCCAGCTAGCTCA 62.802 66.667 16.15 0.00 42.32 4.26
801 821 4.504916 ACGCGCCAGCTAGCTCAG 62.505 66.667 16.15 10.73 42.32 3.35
802 822 4.198890 CGCGCCAGCTAGCTCAGA 62.199 66.667 16.15 0.00 42.32 3.27
803 823 2.584694 GCGCCAGCTAGCTCAGAC 60.585 66.667 16.15 3.45 41.01 3.51
804 824 2.888111 CGCCAGCTAGCTCAGACA 59.112 61.111 16.15 0.00 0.00 3.41
805 825 1.440893 CGCCAGCTAGCTCAGACAT 59.559 57.895 16.15 0.00 0.00 3.06
806 826 0.670706 CGCCAGCTAGCTCAGACATA 59.329 55.000 16.15 0.00 0.00 2.29
807 827 1.067669 CGCCAGCTAGCTCAGACATAA 59.932 52.381 16.15 0.00 0.00 1.90
810 830 3.494048 GCCAGCTAGCTCAGACATAACAT 60.494 47.826 16.15 0.00 0.00 2.71
822 842 7.275341 GCTCAGACATAACATATGCAGATAGAC 59.725 40.741 1.58 0.00 0.00 2.59
845 865 2.044123 ATTCAATGGCGACCTCCTTC 57.956 50.000 0.00 0.00 0.00 3.46
863 883 6.466326 CCTCCTTCAATTTGGCCTGATCTATA 60.466 42.308 3.32 0.00 0.00 1.31
902 922 9.784531 AGTTGATTAAATGATAATGAGATCGGT 57.215 29.630 0.00 0.00 0.00 4.69
903 923 9.817365 GTTGATTAAATGATAATGAGATCGGTG 57.183 33.333 0.00 0.00 0.00 4.94
905 925 7.661027 TGATTAAATGATAATGAGATCGGTGCA 59.339 33.333 0.00 0.00 0.00 4.57
907 927 5.679734 AATGATAATGAGATCGGTGCAAC 57.320 39.130 0.00 0.00 0.00 4.17
908 928 4.135747 TGATAATGAGATCGGTGCAACA 57.864 40.909 0.98 0.00 39.98 3.33
913 933 1.225855 GAGATCGGTGCAACACAACA 58.774 50.000 0.98 0.00 39.98 3.33
914 934 1.601903 GAGATCGGTGCAACACAACAA 59.398 47.619 0.98 0.00 39.98 2.83
915 935 1.333619 AGATCGGTGCAACACAACAAC 59.666 47.619 0.98 0.00 39.98 3.32
916 936 1.064803 GATCGGTGCAACACAACAACA 59.935 47.619 0.98 0.00 39.98 3.33
917 937 0.881796 TCGGTGCAACACAACAACAA 59.118 45.000 0.98 0.00 39.98 2.83
918 938 0.988439 CGGTGCAACACAACAACAAC 59.012 50.000 0.98 0.00 39.98 3.32
919 939 1.667177 CGGTGCAACACAACAACAACA 60.667 47.619 0.98 0.00 39.98 3.33
920 940 2.408050 GGTGCAACACAACAACAACAA 58.592 42.857 0.00 0.00 39.98 2.83
921 941 2.156697 GGTGCAACACAACAACAACAAC 59.843 45.455 0.00 0.00 39.98 3.32
922 942 2.797156 GTGCAACACAACAACAACAACA 59.203 40.909 0.00 0.00 36.32 3.33
945 965 3.701040 ACAACAACAACAGCCTCAAATCT 59.299 39.130 0.00 0.00 0.00 2.40
1065 1085 1.153568 CGATGACAGCACGGTGGAT 60.154 57.895 10.60 0.00 0.00 3.41
1130 1150 4.382320 GGTGCGCCCCTACGTTCA 62.382 66.667 4.45 0.00 34.88 3.18
1283 1448 3.055530 AGCTCGTCCTTCAGTTGATGAAT 60.056 43.478 0.00 0.00 46.71 2.57
1329 1494 2.703007 GTCAAGAGCCATCTCCAGGTAT 59.297 50.000 0.00 0.00 40.22 2.73
1330 1495 2.968574 TCAAGAGCCATCTCCAGGTATC 59.031 50.000 0.00 0.00 40.22 2.24
1368 1533 3.999229 ATTCTGCATCGTCGTCTTTTC 57.001 42.857 0.00 0.00 0.00 2.29
1372 1537 0.095417 GCATCGTCGTCTTTTCCTGC 59.905 55.000 0.00 0.00 0.00 4.85
1454 1619 0.911769 TGGGCCTTCAGATGTACAGG 59.088 55.000 4.53 0.00 0.00 4.00
1497 1690 3.489059 CGGCATGGGTATGAATTTCACAC 60.489 47.826 0.15 0.00 36.36 3.82
1504 1697 5.072040 GGTATGAATTTCACACCCCTTTG 57.928 43.478 14.74 0.00 37.98 2.77
1562 1755 4.633126 CCTGATCTGGCCGATTATTATGTG 59.367 45.833 5.61 0.00 30.84 3.21
1563 1756 4.002982 TGATCTGGCCGATTATTATGTGC 58.997 43.478 10.72 0.00 30.84 4.57
1644 1840 0.610174 ATCATCGTGTCAGTGGTGCT 59.390 50.000 0.00 0.00 0.00 4.40
1703 1899 6.891908 ACTAAATTGCCCTCTACACATTCAAT 59.108 34.615 0.00 0.00 0.00 2.57
1706 1902 5.643379 TTGCCCTCTACACATTCAATTTC 57.357 39.130 0.00 0.00 0.00 2.17
1790 1986 7.445121 TCGTCCTCTGCATTATGAGATAAAAT 58.555 34.615 0.00 0.00 32.44 1.82
1852 2048 7.252965 TCTGAGTACTGACTGATTAATCTCG 57.747 40.000 16.24 9.77 35.45 4.04
1960 2156 3.570550 CCGTTTACTTGGATCAAAACCCA 59.429 43.478 0.00 0.00 0.00 4.51
2003 2199 1.305297 ACCATGACGAGGCTCTCCA 60.305 57.895 13.50 10.32 33.74 3.86
2059 2255 3.691609 CCCAGCTTTGATAGTCCAAGAAC 59.308 47.826 0.00 0.00 0.00 3.01
2085 2281 7.014326 CCCTGTTCATCAAGAAATGATCATCAT 59.986 37.037 9.06 0.00 45.91 2.45
2118 2314 2.851263 ACAACTATGAAAGACGGCCA 57.149 45.000 2.24 0.00 0.00 5.36
2352 2560 5.601729 TCCTAGTCCTAGTACTCTTGATCGA 59.398 44.000 0.00 0.00 0.00 3.59
2353 2561 6.099413 TCCTAGTCCTAGTACTCTTGATCGAA 59.901 42.308 0.00 0.00 0.00 3.71
2354 2562 6.766944 CCTAGTCCTAGTACTCTTGATCGAAA 59.233 42.308 0.00 0.00 0.00 3.46
2355 2563 6.687081 AGTCCTAGTACTCTTGATCGAAAG 57.313 41.667 0.00 0.00 0.00 2.62
2356 2564 5.591067 AGTCCTAGTACTCTTGATCGAAAGG 59.409 44.000 0.00 0.00 0.00 3.11
2357 2565 4.888239 TCCTAGTACTCTTGATCGAAAGGG 59.112 45.833 0.00 0.00 33.57 3.95
2358 2566 4.038162 CCTAGTACTCTTGATCGAAAGGGG 59.962 50.000 0.00 0.00 31.43 4.79
2359 2567 3.709587 AGTACTCTTGATCGAAAGGGGA 58.290 45.455 1.96 0.00 31.43 4.81
2360 2568 3.702045 AGTACTCTTGATCGAAAGGGGAG 59.298 47.826 1.96 3.62 31.43 4.30
2361 2569 1.834263 ACTCTTGATCGAAAGGGGAGG 59.166 52.381 1.96 0.00 31.43 4.30
2362 2570 1.139853 CTCTTGATCGAAAGGGGAGGG 59.860 57.143 0.00 0.00 0.00 4.30
2363 2571 1.204146 CTTGATCGAAAGGGGAGGGA 58.796 55.000 0.00 0.00 0.00 4.20
2364 2572 0.909623 TTGATCGAAAGGGGAGGGAC 59.090 55.000 0.00 0.00 0.00 4.46
2365 2573 1.327690 TGATCGAAAGGGGAGGGACG 61.328 60.000 0.00 0.00 0.00 4.79
2366 2574 1.001248 ATCGAAAGGGGAGGGACGA 59.999 57.895 0.00 0.00 0.00 4.20
2367 2575 1.043673 ATCGAAAGGGGAGGGACGAG 61.044 60.000 0.00 0.00 33.58 4.18
2368 2576 2.722201 CGAAAGGGGAGGGACGAGG 61.722 68.421 0.00 0.00 0.00 4.63
2369 2577 3.009714 AAAGGGGAGGGACGAGGC 61.010 66.667 0.00 0.00 0.00 4.70
2370 2578 3.564347 AAAGGGGAGGGACGAGGCT 62.564 63.158 0.00 0.00 0.00 4.58
2371 2579 3.564347 AAGGGGAGGGACGAGGCTT 62.564 63.158 0.00 0.00 0.00 4.35
2372 2580 3.471806 GGGGAGGGACGAGGCTTC 61.472 72.222 0.00 0.00 0.00 3.86
2373 2581 2.364448 GGGAGGGACGAGGCTTCT 60.364 66.667 0.00 0.00 0.00 2.85
2374 2582 2.428085 GGGAGGGACGAGGCTTCTC 61.428 68.421 0.00 0.00 0.00 2.87
2375 2583 1.380650 GGAGGGACGAGGCTTCTCT 60.381 63.158 0.00 0.00 35.43 3.10
2376 2584 1.671901 GGAGGGACGAGGCTTCTCTG 61.672 65.000 0.00 0.00 35.43 3.35
2377 2585 2.185608 GGGACGAGGCTTCTCTGC 59.814 66.667 0.00 0.00 35.43 4.26
2404 2612 3.698820 GGGTACCGTTCGGCCACT 61.699 66.667 11.32 0.00 40.86 4.00
2405 2613 2.433664 GGTACCGTTCGGCCACTG 60.434 66.667 11.32 0.00 0.00 3.66
2406 2614 2.652530 GTACCGTTCGGCCACTGA 59.347 61.111 11.32 0.00 0.00 3.41
2407 2615 1.735559 GTACCGTTCGGCCACTGAC 60.736 63.158 11.32 0.00 0.00 3.51
2408 2616 2.201708 TACCGTTCGGCCACTGACA 61.202 57.895 11.32 0.00 0.00 3.58
2409 2617 2.149803 TACCGTTCGGCCACTGACAG 62.150 60.000 11.32 0.00 0.00 3.51
2410 2618 2.738521 CGTTCGGCCACTGACAGG 60.739 66.667 2.24 0.00 0.00 4.00
2411 2619 2.426023 GTTCGGCCACTGACAGGT 59.574 61.111 2.24 0.00 0.00 4.00
2412 2620 1.961277 GTTCGGCCACTGACAGGTG 60.961 63.158 2.24 2.99 37.00 4.00
2418 2626 3.569210 CACTGACAGGTGGGCCCA 61.569 66.667 24.45 24.45 34.66 5.36
2419 2627 2.532715 ACTGACAGGTGGGCCCAT 60.533 61.111 31.45 12.72 34.66 4.00
2420 2628 2.273449 CTGACAGGTGGGCCCATC 59.727 66.667 31.45 30.25 34.66 3.51
2421 2629 2.531428 TGACAGGTGGGCCCATCA 60.531 61.111 36.54 27.83 34.66 3.07
2422 2630 2.273449 GACAGGTGGGCCCATCAG 59.727 66.667 36.54 30.86 34.66 2.90
2423 2631 3.341629 ACAGGTGGGCCCATCAGG 61.342 66.667 36.54 28.45 39.47 3.86
2440 2648 4.567318 GGATCAGGCCCACATGTC 57.433 61.111 0.00 0.00 0.00 3.06
2441 2649 1.609239 GGATCAGGCCCACATGTCA 59.391 57.895 0.00 0.00 0.00 3.58
2442 2650 0.465097 GGATCAGGCCCACATGTCAG 60.465 60.000 0.00 0.00 0.00 3.51
2443 2651 0.254178 GATCAGGCCCACATGTCAGT 59.746 55.000 0.00 0.00 0.00 3.41
2444 2652 0.034767 ATCAGGCCCACATGTCAGTG 60.035 55.000 0.00 0.00 39.21 3.66
2445 2653 2.034687 AGGCCCACATGTCAGTGC 59.965 61.111 0.00 0.00 38.18 4.40
2446 2654 3.064324 GGCCCACATGTCAGTGCC 61.064 66.667 0.00 1.75 38.18 5.01
2447 2655 3.064324 GCCCACATGTCAGTGCCC 61.064 66.667 0.00 0.00 38.18 5.36
2448 2656 2.361610 CCCACATGTCAGTGCCCC 60.362 66.667 0.00 0.00 38.18 5.80
2449 2657 2.361610 CCACATGTCAGTGCCCCC 60.362 66.667 0.00 0.00 38.18 5.40
2450 2658 2.435663 CACATGTCAGTGCCCCCA 59.564 61.111 0.00 0.00 32.04 4.96
2451 2659 1.228521 CACATGTCAGTGCCCCCAA 60.229 57.895 0.00 0.00 32.04 4.12
2452 2660 1.228552 ACATGTCAGTGCCCCCAAC 60.229 57.895 0.00 0.00 0.00 3.77
2453 2661 2.034066 ATGTCAGTGCCCCCAACG 59.966 61.111 0.00 0.00 0.00 4.10
2454 2662 3.567579 ATGTCAGTGCCCCCAACGG 62.568 63.158 0.00 0.00 0.00 4.44
2471 2679 3.081133 GCATGTGCCGTACGTCAG 58.919 61.111 15.21 0.00 34.31 3.51
2472 2680 2.452813 GCATGTGCCGTACGTCAGG 61.453 63.158 15.21 12.54 34.31 3.86
2473 2681 1.809619 CATGTGCCGTACGTCAGGG 60.810 63.158 15.21 0.00 35.13 4.45
2474 2682 3.014085 ATGTGCCGTACGTCAGGGG 62.014 63.158 15.21 0.00 32.45 4.79
2475 2683 3.376078 GTGCCGTACGTCAGGGGA 61.376 66.667 15.21 0.00 32.45 4.81
2476 2684 3.066190 TGCCGTACGTCAGGGGAG 61.066 66.667 15.21 0.00 32.45 4.30
2477 2685 4.509737 GCCGTACGTCAGGGGAGC 62.510 72.222 15.21 3.74 32.45 4.70
2478 2686 2.754658 CCGTACGTCAGGGGAGCT 60.755 66.667 15.21 0.00 0.00 4.09
2479 2687 2.490217 CGTACGTCAGGGGAGCTG 59.510 66.667 7.22 0.00 0.00 4.24
2480 2688 2.184579 GTACGTCAGGGGAGCTGC 59.815 66.667 0.00 0.00 0.00 5.25
2481 2689 2.037367 TACGTCAGGGGAGCTGCT 59.963 61.111 0.00 0.00 0.00 4.24
2482 2690 1.609501 TACGTCAGGGGAGCTGCTT 60.610 57.895 2.53 0.00 0.00 3.91
2483 2691 1.605058 TACGTCAGGGGAGCTGCTTC 61.605 60.000 2.53 0.00 0.00 3.86
2484 2692 2.654079 CGTCAGGGGAGCTGCTTCT 61.654 63.158 8.06 0.15 0.00 2.85
2694 2903 2.641559 GTCGTCCGTTGTCCTCGT 59.358 61.111 0.00 0.00 0.00 4.18
2719 2928 4.954933 GCCTCCTGCCGTATTTCA 57.045 55.556 0.00 0.00 0.00 2.69
2721 2930 1.680338 GCCTCCTGCCGTATTTCATT 58.320 50.000 0.00 0.00 0.00 2.57
2723 2932 2.917933 CCTCCTGCCGTATTTCATTGA 58.082 47.619 0.00 0.00 0.00 2.57
2745 2954 3.181493 ACGTATCTCCCGTGTATGTTGTC 60.181 47.826 0.00 0.00 37.12 3.18
2766 2975 6.170506 TGTCAAATCAGTTAAATCGCCTACT 58.829 36.000 0.00 0.00 0.00 2.57
2802 3011 1.379977 TTGAGGAGATCGCCGTCCT 60.380 57.895 10.07 5.35 46.46 3.85
2817 3026 1.806542 CGTCCTGGTCCTTCAACAATG 59.193 52.381 0.00 0.00 0.00 2.82
2876 3085 2.202703 CGAACGACGGGTCCATCC 60.203 66.667 0.00 0.00 38.46 3.51
2931 3150 1.548269 CCTCACTCCTGTTCTCCAGAC 59.452 57.143 0.00 0.00 44.49 3.51
2963 3182 1.282248 CCGAATAGCCATGTACGCCG 61.282 60.000 0.00 0.00 0.00 6.46
3008 3227 3.460648 GGATCTTGTCCTCAACCGG 57.539 57.895 0.00 0.00 44.16 5.28
3024 3243 0.758734 CCGGGCATCATCAGGAACTA 59.241 55.000 0.00 0.00 36.02 2.24
3074 3293 0.463204 AGGCTCGACACATCCATCAG 59.537 55.000 0.00 0.00 0.00 2.90
3119 3362 1.153489 CCCAGATGTCTGCTGACCG 60.153 63.158 19.64 6.87 42.47 4.79
3156 3399 5.416952 ACCATCAGAGACCAAATCAAATGAC 59.583 40.000 0.00 0.00 0.00 3.06
3195 3438 1.686587 TCACATAGCCCTCGTGGTATG 59.313 52.381 15.03 15.03 46.85 2.39
3295 3541 6.899114 ACACCGTTTCTAGAAAATTCATGTC 58.101 36.000 19.30 4.06 31.33 3.06
3388 3770 3.440356 GATAGCTGCAACCGCGCAC 62.440 63.158 8.75 0.00 42.97 5.34
3455 4143 1.751437 GGGCTGGAATCTAACACACC 58.249 55.000 0.00 0.00 0.00 4.16
3463 4151 2.024176 ATCTAACACACCACGGCATC 57.976 50.000 0.00 0.00 0.00 3.91
3486 4174 2.500229 GTCAGGGAATCGAAACCAACA 58.500 47.619 12.16 0.00 0.00 3.33
3501 4189 0.673333 CAACACCATGCCTACGCTCA 60.673 55.000 0.00 0.00 35.36 4.26
3566 4254 1.531149 GCTCACTTTTTACAGCTCGCA 59.469 47.619 0.00 0.00 0.00 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.537135 GCGGAGTTGGTGCTCTAGATC 60.537 57.143 0.00 0.00 35.89 2.75
1 2 0.461961 GCGGAGTTGGTGCTCTAGAT 59.538 55.000 0.00 0.00 35.89 1.98
2 3 1.605058 GGCGGAGTTGGTGCTCTAGA 61.605 60.000 0.00 0.00 35.89 2.43
3 4 1.153549 GGCGGAGTTGGTGCTCTAG 60.154 63.158 0.00 0.00 35.89 2.43
4 5 0.323999 TAGGCGGAGTTGGTGCTCTA 60.324 55.000 0.00 0.00 35.89 2.43
5 6 1.608717 CTAGGCGGAGTTGGTGCTCT 61.609 60.000 0.00 0.00 35.89 4.09
6 7 1.153549 CTAGGCGGAGTTGGTGCTC 60.154 63.158 0.00 0.00 34.89 4.26
7 8 1.913762 ACTAGGCGGAGTTGGTGCT 60.914 57.895 0.00 0.00 0.00 4.40
8 9 1.741770 CACTAGGCGGAGTTGGTGC 60.742 63.158 0.00 0.00 0.00 5.01
9 10 1.741770 GCACTAGGCGGAGTTGGTG 60.742 63.158 0.00 0.00 0.00 4.17
10 11 2.663196 GCACTAGGCGGAGTTGGT 59.337 61.111 0.00 0.00 0.00 3.67
20 21 2.501610 GAGGAAGGCCGCACTAGG 59.498 66.667 0.00 0.00 39.96 3.02
21 22 1.899437 TTGGAGGAAGGCCGCACTAG 61.899 60.000 0.00 0.00 39.96 2.57
22 23 1.271840 ATTGGAGGAAGGCCGCACTA 61.272 55.000 0.00 0.00 39.96 2.74
23 24 2.543067 GATTGGAGGAAGGCCGCACT 62.543 60.000 0.00 0.00 39.96 4.40
24 25 2.044946 ATTGGAGGAAGGCCGCAC 60.045 61.111 0.00 0.00 39.96 5.34
25 26 1.925285 ATGATTGGAGGAAGGCCGCA 61.925 55.000 0.00 0.00 39.96 5.69
26 27 1.152881 ATGATTGGAGGAAGGCCGC 60.153 57.895 0.00 0.00 39.96 6.53
27 28 0.471617 AGATGATTGGAGGAAGGCCG 59.528 55.000 0.00 0.00 39.96 6.13
28 29 3.586618 AGATAGATGATTGGAGGAAGGCC 59.413 47.826 0.00 0.00 0.00 5.19
29 30 4.285517 TGAGATAGATGATTGGAGGAAGGC 59.714 45.833 0.00 0.00 0.00 4.35
30 31 6.441284 AGATGAGATAGATGATTGGAGGAAGG 59.559 42.308 0.00 0.00 0.00 3.46
31 32 7.484993 AGATGAGATAGATGATTGGAGGAAG 57.515 40.000 0.00 0.00 0.00 3.46
32 33 7.618907 CCTAGATGAGATAGATGATTGGAGGAA 59.381 40.741 0.00 0.00 0.00 3.36
33 34 7.036279 TCCTAGATGAGATAGATGATTGGAGGA 60.036 40.741 0.00 0.00 0.00 3.71
34 35 7.124721 TCCTAGATGAGATAGATGATTGGAGG 58.875 42.308 0.00 0.00 0.00 4.30
35 36 8.771521 ATCCTAGATGAGATAGATGATTGGAG 57.228 38.462 0.00 0.00 0.00 3.86
36 37 8.567851 AGATCCTAGATGAGATAGATGATTGGA 58.432 37.037 0.00 0.00 0.00 3.53
37 38 8.771521 AGATCCTAGATGAGATAGATGATTGG 57.228 38.462 0.00 0.00 0.00 3.16
38 39 9.636789 AGAGATCCTAGATGAGATAGATGATTG 57.363 37.037 0.00 0.00 0.00 2.67
39 40 9.636789 CAGAGATCCTAGATGAGATAGATGATT 57.363 37.037 0.00 0.00 0.00 2.57
40 41 8.784880 ACAGAGATCCTAGATGAGATAGATGAT 58.215 37.037 0.00 0.00 0.00 2.45
41 42 8.161640 ACAGAGATCCTAGATGAGATAGATGA 57.838 38.462 0.00 0.00 0.00 2.92
42 43 8.270030 AGACAGAGATCCTAGATGAGATAGATG 58.730 40.741 0.00 0.00 0.00 2.90
43 44 8.397951 AGACAGAGATCCTAGATGAGATAGAT 57.602 38.462 0.00 0.00 0.00 1.98
44 45 7.813087 AGACAGAGATCCTAGATGAGATAGA 57.187 40.000 0.00 0.00 0.00 1.98
45 46 9.958180 TTAAGACAGAGATCCTAGATGAGATAG 57.042 37.037 0.00 0.00 0.00 2.08
46 47 9.958180 CTTAAGACAGAGATCCTAGATGAGATA 57.042 37.037 0.00 0.00 0.00 1.98
47 48 8.448008 ACTTAAGACAGAGATCCTAGATGAGAT 58.552 37.037 10.09 0.00 0.00 2.75
48 49 7.811282 ACTTAAGACAGAGATCCTAGATGAGA 58.189 38.462 10.09 0.00 0.00 3.27
49 50 8.352201 CAACTTAAGACAGAGATCCTAGATGAG 58.648 40.741 10.09 0.00 0.00 2.90
50 51 7.201866 GCAACTTAAGACAGAGATCCTAGATGA 60.202 40.741 10.09 0.00 0.00 2.92
51 52 6.922957 GCAACTTAAGACAGAGATCCTAGATG 59.077 42.308 10.09 0.00 0.00 2.90
52 53 6.238897 CGCAACTTAAGACAGAGATCCTAGAT 60.239 42.308 10.09 0.00 0.00 1.98
53 54 5.066634 CGCAACTTAAGACAGAGATCCTAGA 59.933 44.000 10.09 0.00 0.00 2.43
54 55 5.277825 CGCAACTTAAGACAGAGATCCTAG 58.722 45.833 10.09 0.00 0.00 3.02
55 56 4.440250 GCGCAACTTAAGACAGAGATCCTA 60.440 45.833 10.09 0.00 0.00 2.94
56 57 3.677424 GCGCAACTTAAGACAGAGATCCT 60.677 47.826 10.09 0.00 0.00 3.24
57 58 2.605366 GCGCAACTTAAGACAGAGATCC 59.395 50.000 10.09 0.00 0.00 3.36
58 59 3.254060 TGCGCAACTTAAGACAGAGATC 58.746 45.455 8.16 0.00 0.00 2.75
59 60 3.257393 CTGCGCAACTTAAGACAGAGAT 58.743 45.455 13.05 0.00 0.00 2.75
60 61 2.677199 CTGCGCAACTTAAGACAGAGA 58.323 47.619 13.05 0.00 0.00 3.10
61 62 1.127582 GCTGCGCAACTTAAGACAGAG 59.872 52.381 13.05 0.00 0.00 3.35
62 63 1.148310 GCTGCGCAACTTAAGACAGA 58.852 50.000 13.05 0.00 0.00 3.41
63 64 0.166814 GGCTGCGCAACTTAAGACAG 59.833 55.000 13.05 9.17 0.00 3.51
64 65 1.565156 CGGCTGCGCAACTTAAGACA 61.565 55.000 13.05 0.00 0.00 3.41
65 66 1.132640 CGGCTGCGCAACTTAAGAC 59.867 57.895 13.05 0.00 0.00 3.01
66 67 0.391130 ATCGGCTGCGCAACTTAAGA 60.391 50.000 13.05 5.83 0.00 2.10
67 68 1.286501 TATCGGCTGCGCAACTTAAG 58.713 50.000 13.05 0.00 0.00 1.85
68 69 1.948104 ATATCGGCTGCGCAACTTAA 58.052 45.000 13.05 0.00 0.00 1.85
69 70 1.948104 AATATCGGCTGCGCAACTTA 58.052 45.000 13.05 0.00 0.00 2.24
70 71 1.094785 AAATATCGGCTGCGCAACTT 58.905 45.000 13.05 0.00 0.00 2.66
71 72 0.378257 CAAATATCGGCTGCGCAACT 59.622 50.000 13.05 0.00 0.00 3.16
72 73 1.202348 GCAAATATCGGCTGCGCAAC 61.202 55.000 13.05 6.98 0.00 4.17
73 74 1.063972 GCAAATATCGGCTGCGCAA 59.936 52.632 13.05 0.00 0.00 4.85
74 75 2.715005 GCAAATATCGGCTGCGCA 59.285 55.556 10.98 10.98 0.00 6.09
75 76 2.050985 GGCAAATATCGGCTGCGC 60.051 61.111 0.00 0.00 36.93 6.09
76 77 1.571460 GAGGCAAATATCGGCTGCG 59.429 57.895 5.97 0.00 39.76 5.18
77 78 0.880278 TCGAGGCAAATATCGGCTGC 60.880 55.000 5.97 0.00 39.76 5.25
78 79 1.581934 TTCGAGGCAAATATCGGCTG 58.418 50.000 5.97 0.00 39.76 4.85
79 80 1.940613 GTTTCGAGGCAAATATCGGCT 59.059 47.619 1.26 1.26 42.85 5.52
80 81 1.668751 TGTTTCGAGGCAAATATCGGC 59.331 47.619 0.00 0.00 39.38 5.54
81 82 4.201910 ACAATGTTTCGAGGCAAATATCGG 60.202 41.667 0.00 0.00 39.38 4.18
82 83 4.908736 ACAATGTTTCGAGGCAAATATCG 58.091 39.130 0.00 0.00 40.26 2.92
83 84 6.321717 TCAACAATGTTTCGAGGCAAATATC 58.678 36.000 0.00 0.00 0.00 1.63
84 85 6.266168 TCAACAATGTTTCGAGGCAAATAT 57.734 33.333 0.00 0.00 0.00 1.28
85 86 5.697473 TCAACAATGTTTCGAGGCAAATA 57.303 34.783 0.00 0.00 0.00 1.40
86 87 4.582701 TCAACAATGTTTCGAGGCAAAT 57.417 36.364 0.00 0.00 0.00 2.32
87 88 4.109050 GTTCAACAATGTTTCGAGGCAAA 58.891 39.130 0.00 0.00 0.00 3.68
88 89 3.701241 GTTCAACAATGTTTCGAGGCAA 58.299 40.909 0.00 0.00 0.00 4.52
89 90 2.286713 CGTTCAACAATGTTTCGAGGCA 60.287 45.455 0.00 0.00 0.00 4.75
90 91 2.307049 CGTTCAACAATGTTTCGAGGC 58.693 47.619 0.00 0.00 0.00 4.70
91 92 2.307049 GCGTTCAACAATGTTTCGAGG 58.693 47.619 15.36 4.63 0.00 4.63
92 93 1.962547 CGCGTTCAACAATGTTTCGAG 59.037 47.619 15.36 10.28 0.00 4.04
93 94 1.918112 GCGCGTTCAACAATGTTTCGA 60.918 47.619 8.43 1.59 0.00 3.71
94 95 0.425656 GCGCGTTCAACAATGTTTCG 59.574 50.000 8.43 3.51 0.00 3.46
95 96 0.775861 GGCGCGTTCAACAATGTTTC 59.224 50.000 8.43 0.00 0.00 2.78
96 97 0.932585 CGGCGCGTTCAACAATGTTT 60.933 50.000 8.43 0.00 0.00 2.83
97 98 1.369930 CGGCGCGTTCAACAATGTT 60.370 52.632 8.43 0.00 0.00 2.71
98 99 2.251075 CGGCGCGTTCAACAATGT 59.749 55.556 8.43 0.00 0.00 2.71
99 100 2.251075 ACGGCGCGTTCAACAATG 59.749 55.556 6.90 0.00 36.35 2.82
112 113 2.481471 GCCCTATGGAAGCAACGGC 61.481 63.158 0.00 0.00 41.61 5.68
113 114 1.823899 GGCCCTATGGAAGCAACGG 60.824 63.158 0.00 0.00 0.00 4.44
114 115 1.823899 GGGCCCTATGGAAGCAACG 60.824 63.158 17.04 0.00 0.00 4.10
115 116 0.324275 TTGGGCCCTATGGAAGCAAC 60.324 55.000 25.70 0.00 0.00 4.17
116 117 0.033208 CTTGGGCCCTATGGAAGCAA 60.033 55.000 25.70 4.04 0.00 3.91
117 118 1.614711 CTTGGGCCCTATGGAAGCA 59.385 57.895 25.70 0.00 0.00 3.91
118 119 1.829970 GCTTGGGCCCTATGGAAGC 60.830 63.158 23.62 23.62 33.43 3.86
119 120 0.033208 TTGCTTGGGCCCTATGGAAG 60.033 55.000 25.70 18.64 37.74 3.46
120 121 0.636101 ATTGCTTGGGCCCTATGGAA 59.364 50.000 25.70 19.53 37.74 3.53
121 122 0.636101 AATTGCTTGGGCCCTATGGA 59.364 50.000 25.70 11.42 37.74 3.41
122 123 2.242043 CTAATTGCTTGGGCCCTATGG 58.758 52.381 25.70 11.25 37.74 2.74
123 124 2.158475 TCCTAATTGCTTGGGCCCTATG 60.158 50.000 25.70 13.98 37.74 2.23
124 125 2.143602 TCCTAATTGCTTGGGCCCTAT 58.856 47.619 25.70 1.83 37.74 2.57
125 126 1.602440 TCCTAATTGCTTGGGCCCTA 58.398 50.000 25.70 15.88 37.74 3.53
126 127 0.936691 ATCCTAATTGCTTGGGCCCT 59.063 50.000 25.70 2.29 37.74 5.19
127 128 1.332195 GATCCTAATTGCTTGGGCCC 58.668 55.000 17.59 17.59 37.74 5.80
128 129 2.071778 TGATCCTAATTGCTTGGGCC 57.928 50.000 0.00 0.00 37.74 5.80
129 130 3.225104 TCATGATCCTAATTGCTTGGGC 58.775 45.455 0.00 0.00 33.18 5.36
130 131 4.219944 CCATCATGATCCTAATTGCTTGGG 59.780 45.833 4.86 0.00 34.41 4.12
131 132 5.074804 TCCATCATGATCCTAATTGCTTGG 58.925 41.667 4.86 1.01 0.00 3.61
132 133 5.768662 ACTCCATCATGATCCTAATTGCTTG 59.231 40.000 4.86 0.00 0.00 4.01
133 134 5.950023 ACTCCATCATGATCCTAATTGCTT 58.050 37.500 4.86 0.00 0.00 3.91
134 135 5.558818 GACTCCATCATGATCCTAATTGCT 58.441 41.667 4.86 0.00 0.00 3.91
135 136 4.391216 CGACTCCATCATGATCCTAATTGC 59.609 45.833 4.86 0.00 0.00 3.56
136 137 5.787380 TCGACTCCATCATGATCCTAATTG 58.213 41.667 4.86 0.00 0.00 2.32
137 138 6.425210 TTCGACTCCATCATGATCCTAATT 57.575 37.500 4.86 0.00 0.00 1.40
138 139 6.440010 AGATTCGACTCCATCATGATCCTAAT 59.560 38.462 4.86 0.00 0.00 1.73
139 140 5.777223 AGATTCGACTCCATCATGATCCTAA 59.223 40.000 4.86 0.00 0.00 2.69
140 141 5.328565 AGATTCGACTCCATCATGATCCTA 58.671 41.667 4.86 0.00 0.00 2.94
141 142 4.158786 AGATTCGACTCCATCATGATCCT 58.841 43.478 4.86 0.00 0.00 3.24
142 143 4.533919 AGATTCGACTCCATCATGATCC 57.466 45.455 4.86 0.00 0.00 3.36
143 144 5.782047 AGAAGATTCGACTCCATCATGATC 58.218 41.667 4.86 0.00 0.00 2.92
144 145 5.303845 TGAGAAGATTCGACTCCATCATGAT 59.696 40.000 1.18 1.18 0.00 2.45
145 146 4.646492 TGAGAAGATTCGACTCCATCATGA 59.354 41.667 0.00 0.00 0.00 3.07
146 147 4.941657 TGAGAAGATTCGACTCCATCATG 58.058 43.478 0.00 0.00 0.00 3.07
147 148 4.039004 CCTGAGAAGATTCGACTCCATCAT 59.961 45.833 0.00 0.00 0.00 2.45
148 149 3.382865 CCTGAGAAGATTCGACTCCATCA 59.617 47.826 0.00 1.35 0.00 3.07
149 150 3.383185 ACCTGAGAAGATTCGACTCCATC 59.617 47.826 0.00 0.00 0.00 3.51
150 151 3.370104 ACCTGAGAAGATTCGACTCCAT 58.630 45.455 0.00 0.00 0.00 3.41
151 152 2.755655 GACCTGAGAAGATTCGACTCCA 59.244 50.000 0.00 0.00 0.00 3.86
152 153 2.100087 GGACCTGAGAAGATTCGACTCC 59.900 54.545 0.00 0.00 0.00 3.85
153 154 2.223386 CGGACCTGAGAAGATTCGACTC 60.223 54.545 0.00 0.00 0.00 3.36
154 155 1.746220 CGGACCTGAGAAGATTCGACT 59.254 52.381 0.00 0.00 0.00 4.18
155 156 1.799548 GCGGACCTGAGAAGATTCGAC 60.800 57.143 0.00 0.00 0.00 4.20
156 157 0.456221 GCGGACCTGAGAAGATTCGA 59.544 55.000 0.00 0.00 0.00 3.71
157 158 0.173481 TGCGGACCTGAGAAGATTCG 59.827 55.000 0.00 0.00 0.00 3.34
158 159 1.205893 AGTGCGGACCTGAGAAGATTC 59.794 52.381 2.38 0.00 0.00 2.52
159 160 1.066573 CAGTGCGGACCTGAGAAGATT 60.067 52.381 2.38 0.00 31.38 2.40
160 161 0.534412 CAGTGCGGACCTGAGAAGAT 59.466 55.000 2.38 0.00 31.38 2.40
161 162 0.539669 TCAGTGCGGACCTGAGAAGA 60.540 55.000 2.38 0.00 34.12 2.87
162 163 0.534412 ATCAGTGCGGACCTGAGAAG 59.466 55.000 2.38 0.00 41.91 2.85
163 164 0.247460 CATCAGTGCGGACCTGAGAA 59.753 55.000 2.38 0.00 41.91 2.87
164 165 0.900182 ACATCAGTGCGGACCTGAGA 60.900 55.000 2.38 0.00 41.91 3.27
165 166 0.036952 AACATCAGTGCGGACCTGAG 60.037 55.000 2.38 4.44 41.91 3.35
166 167 0.320683 CAACATCAGTGCGGACCTGA 60.321 55.000 2.38 7.54 42.74 3.86
167 168 0.320683 TCAACATCAGTGCGGACCTG 60.321 55.000 2.38 1.68 0.00 4.00
168 169 0.036952 CTCAACATCAGTGCGGACCT 60.037 55.000 2.38 0.00 0.00 3.85
169 170 0.320771 ACTCAACATCAGTGCGGACC 60.321 55.000 2.38 0.00 0.00 4.46
170 171 2.363788 TACTCAACATCAGTGCGGAC 57.636 50.000 0.00 0.00 0.00 4.79
171 172 3.056179 TGAATACTCAACATCAGTGCGGA 60.056 43.478 0.00 0.00 0.00 5.54
172 173 3.261580 TGAATACTCAACATCAGTGCGG 58.738 45.455 0.00 0.00 0.00 5.69
173 174 4.201753 CCTTGAATACTCAACATCAGTGCG 60.202 45.833 0.00 0.00 36.62 5.34
174 175 4.937620 TCCTTGAATACTCAACATCAGTGC 59.062 41.667 0.00 0.00 36.62 4.40
175 176 6.169094 AGTCCTTGAATACTCAACATCAGTG 58.831 40.000 0.00 0.00 36.62 3.66
176 177 6.365970 AGTCCTTGAATACTCAACATCAGT 57.634 37.500 0.00 0.00 36.62 3.41
177 178 8.954950 AATAGTCCTTGAATACTCAACATCAG 57.045 34.615 0.00 0.00 36.62 2.90
178 179 9.739276 AAAATAGTCCTTGAATACTCAACATCA 57.261 29.630 0.00 0.00 36.62 3.07
208 209 1.405526 GCAGATCAGTGCCGACCTTTA 60.406 52.381 0.00 0.00 37.49 1.85
242 243 1.867865 TCACAAGCGCACGTTTGATTA 59.132 42.857 23.33 7.65 38.35 1.75
246 247 0.316937 ACATCACAAGCGCACGTTTG 60.317 50.000 16.46 16.46 41.16 2.93
276 279 1.479323 TGTACAATCGCTGGGTCCTAC 59.521 52.381 0.00 0.00 0.00 3.18
312 315 9.895138 ACTACTAGTGTGTTTCCTTTTCTAAAA 57.105 29.630 5.39 0.00 0.00 1.52
313 316 9.321562 CACTACTAGTGTGTTTCCTTTTCTAAA 57.678 33.333 5.39 0.00 41.19 1.85
314 317 8.882415 CACTACTAGTGTGTTTCCTTTTCTAA 57.118 34.615 5.39 0.00 41.19 2.10
330 333 6.453092 AGTTTTCACGTAATGCACTACTAGT 58.547 36.000 3.55 0.00 0.00 2.57
331 334 6.584942 TGAGTTTTCACGTAATGCACTACTAG 59.415 38.462 3.55 0.00 0.00 2.57
332 335 6.448852 TGAGTTTTCACGTAATGCACTACTA 58.551 36.000 3.55 0.00 0.00 1.82
333 336 5.294356 TGAGTTTTCACGTAATGCACTACT 58.706 37.500 3.55 0.00 0.00 2.57
334 337 5.585500 TGAGTTTTCACGTAATGCACTAC 57.415 39.130 0.00 0.00 0.00 2.73
340 343 6.317088 AGATTGCATGAGTTTTCACGTAATG 58.683 36.000 0.00 0.00 33.11 1.90
371 374 3.611766 TTGCCCGGTTCAAAAGAAAAA 57.388 38.095 0.00 0.00 0.00 1.94
372 375 3.611766 TTTGCCCGGTTCAAAAGAAAA 57.388 38.095 14.41 0.00 31.27 2.29
373 376 3.055747 AGTTTTGCCCGGTTCAAAAGAAA 60.056 39.130 23.72 7.82 42.08 2.52
374 377 2.498078 AGTTTTGCCCGGTTCAAAAGAA 59.502 40.909 23.72 8.10 42.08 2.52
375 378 2.100087 GAGTTTTGCCCGGTTCAAAAGA 59.900 45.455 23.72 8.65 42.08 2.52
376 379 2.159170 TGAGTTTTGCCCGGTTCAAAAG 60.159 45.455 23.72 0.26 42.08 2.27
377 380 1.825474 TGAGTTTTGCCCGGTTCAAAA 59.175 42.857 20.98 20.98 40.03 2.44
378 381 1.475403 TGAGTTTTGCCCGGTTCAAA 58.525 45.000 13.19 13.19 0.00 2.69
379 382 1.339610 CATGAGTTTTGCCCGGTTCAA 59.660 47.619 0.00 0.84 0.00 2.69
380 383 0.958091 CATGAGTTTTGCCCGGTTCA 59.042 50.000 0.00 0.00 0.00 3.18
381 384 0.388520 GCATGAGTTTTGCCCGGTTC 60.389 55.000 0.00 0.00 33.95 3.62
382 385 1.112315 TGCATGAGTTTTGCCCGGTT 61.112 50.000 0.00 0.00 39.39 4.44
383 386 1.112315 TTGCATGAGTTTTGCCCGGT 61.112 50.000 0.00 0.00 39.39 5.28
384 387 0.247185 ATTGCATGAGTTTTGCCCGG 59.753 50.000 0.00 0.00 39.39 5.73
385 388 1.203052 AGATTGCATGAGTTTTGCCCG 59.797 47.619 0.00 0.00 39.39 6.13
386 389 2.231964 TGAGATTGCATGAGTTTTGCCC 59.768 45.455 0.00 0.00 39.39 5.36
387 390 3.581024 TGAGATTGCATGAGTTTTGCC 57.419 42.857 0.00 0.00 39.39 4.52
388 391 3.306166 GCATGAGATTGCATGAGTTTTGC 59.694 43.478 8.40 0.00 46.64 3.68
447 450 4.626172 GCACTAACTAACAAGTCCAGCTAC 59.374 45.833 0.00 0.00 0.00 3.58
459 462 4.467198 TCTAAGGCCAGCACTAACTAAC 57.533 45.455 5.01 0.00 0.00 2.34
638 649 8.400184 ACACTTTACAGTACATGTACTAGTCA 57.600 34.615 32.58 21.67 44.14 3.41
673 685 6.071952 TGAGGTGGTGAAAGATTGAATTAAGC 60.072 38.462 0.00 0.00 0.00 3.09
799 819 8.302438 TCTGTCTATCTGCATATGTTATGTCTG 58.698 37.037 4.29 0.00 0.00 3.51
800 820 8.414629 TCTGTCTATCTGCATATGTTATGTCT 57.585 34.615 4.29 0.00 0.00 3.41
801 821 9.650539 ATTCTGTCTATCTGCATATGTTATGTC 57.349 33.333 4.29 0.00 0.00 3.06
806 826 8.969260 TTGAATTCTGTCTATCTGCATATGTT 57.031 30.769 7.05 0.00 0.00 2.71
807 827 9.000486 CATTGAATTCTGTCTATCTGCATATGT 58.000 33.333 7.05 0.00 0.00 2.29
810 830 6.429078 GCCATTGAATTCTGTCTATCTGCATA 59.571 38.462 7.05 0.00 0.00 3.14
822 842 1.672881 GGAGGTCGCCATTGAATTCTG 59.327 52.381 7.05 0.00 0.00 3.02
845 865 7.449395 TGGAAGATTATAGATCAGGCCAAATTG 59.551 37.037 5.01 0.00 0.00 2.32
863 883 7.890127 TCATTTAATCAACTCTGGTGGAAGATT 59.110 33.333 0.00 0.00 0.00 2.40
899 919 0.988439 GTTGTTGTTGTGTTGCACCG 59.012 50.000 0.00 0.00 32.73 4.94
900 920 2.071688 TGTTGTTGTTGTGTTGCACC 57.928 45.000 0.00 0.00 32.73 5.01
902 922 3.097877 TGTTGTTGTTGTTGTGTTGCA 57.902 38.095 0.00 0.00 0.00 4.08
903 923 3.246226 TGTTGTTGTTGTTGTTGTGTTGC 59.754 39.130 0.00 0.00 0.00 4.17
905 925 4.870426 TGTTGTTGTTGTTGTTGTTGTGTT 59.130 33.333 0.00 0.00 0.00 3.32
907 927 5.193936 GTTGTTGTTGTTGTTGTTGTTGTG 58.806 37.500 0.00 0.00 0.00 3.33
908 928 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
913 933 4.025313 GCTGTTGTTGTTGTTGTTGTTGTT 60.025 37.500 0.00 0.00 0.00 2.83
914 934 3.492756 GCTGTTGTTGTTGTTGTTGTTGT 59.507 39.130 0.00 0.00 0.00 3.32
915 935 3.120718 GGCTGTTGTTGTTGTTGTTGTTG 60.121 43.478 0.00 0.00 0.00 3.33
916 936 3.063485 GGCTGTTGTTGTTGTTGTTGTT 58.937 40.909 0.00 0.00 0.00 2.83
917 937 2.298729 AGGCTGTTGTTGTTGTTGTTGT 59.701 40.909 0.00 0.00 0.00 3.32
918 938 2.923020 GAGGCTGTTGTTGTTGTTGTTG 59.077 45.455 0.00 0.00 0.00 3.33
919 939 2.560542 TGAGGCTGTTGTTGTTGTTGTT 59.439 40.909 0.00 0.00 0.00 2.83
920 940 2.166829 TGAGGCTGTTGTTGTTGTTGT 58.833 42.857 0.00 0.00 0.00 3.32
921 941 2.937469 TGAGGCTGTTGTTGTTGTTG 57.063 45.000 0.00 0.00 0.00 3.33
922 942 3.951775 TTTGAGGCTGTTGTTGTTGTT 57.048 38.095 0.00 0.00 0.00 2.83
1130 1150 0.183731 GAGGCGGGGATTCTTGGAAT 59.816 55.000 0.00 0.00 0.00 3.01
1283 1448 2.368875 GCCTATGCTAAGCCCTCTAACA 59.631 50.000 0.00 0.00 33.53 2.41
1329 1494 7.882791 TGCAGAATTAAGAAGTAAAGTGATGGA 59.117 33.333 0.00 0.00 0.00 3.41
1330 1495 8.044060 TGCAGAATTAAGAAGTAAAGTGATGG 57.956 34.615 0.00 0.00 0.00 3.51
1351 1516 1.391485 CAGGAAAAGACGACGATGCAG 59.609 52.381 0.00 0.00 0.00 4.41
1368 1533 0.725784 GTGAAACATGAACGCGCAGG 60.726 55.000 5.73 0.36 36.32 4.85
1372 1537 2.880822 ATCAGTGAAACATGAACGCG 57.119 45.000 3.53 3.53 41.43 6.01
1454 1619 2.926838 GGAGTCGTCAATCTTCTTGCTC 59.073 50.000 0.00 0.00 0.00 4.26
1497 1690 7.393216 TCCATTCAAATCAAATAACAAAGGGG 58.607 34.615 0.00 0.00 0.00 4.79
1562 1755 1.202463 AGTGACCTATGATGACTGCGC 60.202 52.381 0.00 0.00 0.00 6.09
1563 1756 2.862536 CAAGTGACCTATGATGACTGCG 59.137 50.000 0.00 0.00 0.00 5.18
1644 1840 4.868268 ACTACCTAGAGAGCATTGTACCA 58.132 43.478 0.00 0.00 0.00 3.25
1703 1899 8.867112 ATATAGTCGATCGCTTAACAAAGAAA 57.133 30.769 11.09 0.00 0.00 2.52
1814 2010 8.948145 GTCAGTACTCAGAACTAACAATCTAGA 58.052 37.037 0.00 0.00 0.00 2.43
1852 2048 3.435671 CCAAACCTAGTTCGTCATCCAAC 59.564 47.826 0.00 0.00 0.00 3.77
1900 2096 1.606531 GTTCATGCCAGCTCCTCCT 59.393 57.895 0.00 0.00 0.00 3.69
1901 2097 1.452833 GGTTCATGCCAGCTCCTCC 60.453 63.158 0.00 0.00 0.00 4.30
1902 2098 0.106819 ATGGTTCATGCCAGCTCCTC 60.107 55.000 0.00 0.00 42.47 3.71
1903 2099 1.133976 GTATGGTTCATGCCAGCTCCT 60.134 52.381 0.00 0.00 42.47 3.69
1960 2156 3.564644 GCTGCTGCTGATGATGAATAGTT 59.435 43.478 10.92 0.00 36.03 2.24
1986 2182 1.271934 CTATGGAGAGCCTCGTCATGG 59.728 57.143 11.34 6.30 34.31 3.66
2059 2255 6.320418 TGATGATCATTTCTTGATGAACAGGG 59.680 38.462 10.14 0.00 45.29 4.45
2085 2281 0.036164 AGTTGTAGCGGTTCATGGCA 59.964 50.000 0.00 0.00 0.00 4.92
2299 2507 5.836024 AGGGATAGAGACAGTCTAGTAGG 57.164 47.826 2.00 0.00 41.28 3.18
2352 2560 3.009714 GCCTCGTCCCTCCCCTTT 61.010 66.667 0.00 0.00 0.00 3.11
2353 2561 3.564347 AAGCCTCGTCCCTCCCCTT 62.564 63.158 0.00 0.00 0.00 3.95
2354 2562 3.986116 GAAGCCTCGTCCCTCCCCT 62.986 68.421 0.00 0.00 0.00 4.79
2355 2563 3.471806 GAAGCCTCGTCCCTCCCC 61.472 72.222 0.00 0.00 0.00 4.81
2356 2564 2.364448 AGAAGCCTCGTCCCTCCC 60.364 66.667 0.00 0.00 0.00 4.30
2357 2565 1.380650 AGAGAAGCCTCGTCCCTCC 60.381 63.158 0.00 0.00 44.08 4.30
2358 2566 1.813192 CAGAGAAGCCTCGTCCCTC 59.187 63.158 0.00 0.00 44.08 4.30
2359 2567 2.355193 GCAGAGAAGCCTCGTCCCT 61.355 63.158 0.00 0.00 44.08 4.20
2360 2568 2.185608 GCAGAGAAGCCTCGTCCC 59.814 66.667 0.00 0.00 44.08 4.46
2385 2593 3.697747 TGGCCGAACGGTACCCTG 61.698 66.667 14.63 0.00 37.65 4.45
2386 2594 3.698820 GTGGCCGAACGGTACCCT 61.699 66.667 14.63 0.00 37.65 4.34
2387 2595 3.698820 AGTGGCCGAACGGTACCC 61.699 66.667 14.63 8.08 37.65 3.69
2388 2596 2.433664 CAGTGGCCGAACGGTACC 60.434 66.667 14.63 0.16 37.65 3.34
2389 2597 1.735559 GTCAGTGGCCGAACGGTAC 60.736 63.158 14.63 13.24 37.65 3.34
2390 2598 2.149803 CTGTCAGTGGCCGAACGGTA 62.150 60.000 14.63 2.04 37.65 4.02
2391 2599 3.515316 CTGTCAGTGGCCGAACGGT 62.515 63.158 14.63 0.00 37.65 4.83
2392 2600 2.738521 CTGTCAGTGGCCGAACGG 60.739 66.667 9.00 9.00 38.57 4.44
2393 2601 2.738521 CCTGTCAGTGGCCGAACG 60.739 66.667 0.00 0.00 0.00 3.95
2394 2602 1.961277 CACCTGTCAGTGGCCGAAC 60.961 63.158 0.00 0.00 33.95 3.95
2395 2603 2.425592 CACCTGTCAGTGGCCGAA 59.574 61.111 0.00 0.00 33.95 4.30
2401 2609 2.826777 GATGGGCCCACCTGTCAGTG 62.827 65.000 31.51 0.00 41.11 3.66
2402 2610 2.532715 ATGGGCCCACCTGTCAGT 60.533 61.111 31.51 5.23 41.11 3.41
2403 2611 2.273449 GATGGGCCCACCTGTCAG 59.727 66.667 31.51 0.00 41.11 3.51
2404 2612 2.531428 TGATGGGCCCACCTGTCA 60.531 61.111 31.51 24.68 41.11 3.58
2405 2613 2.273449 CTGATGGGCCCACCTGTC 59.727 66.667 31.51 22.00 41.11 3.51
2406 2614 3.341629 CCTGATGGGCCCACCTGT 61.342 66.667 31.51 12.18 41.11 4.00
2416 2624 2.080536 TGGGCCTGATCCCTGATGG 61.081 63.158 4.53 0.00 46.67 3.51
2417 2625 1.150081 GTGGGCCTGATCCCTGATG 59.850 63.158 4.53 0.00 46.67 3.07
2418 2626 0.700269 ATGTGGGCCTGATCCCTGAT 60.700 55.000 4.53 0.00 46.67 2.90
2419 2627 1.308128 ATGTGGGCCTGATCCCTGA 60.308 57.895 4.53 0.00 46.67 3.86
2420 2628 1.152819 CATGTGGGCCTGATCCCTG 60.153 63.158 4.53 0.00 46.67 4.45
2421 2629 1.620589 ACATGTGGGCCTGATCCCT 60.621 57.895 4.53 0.00 46.67 4.20
2422 2630 1.152881 GACATGTGGGCCTGATCCC 60.153 63.158 1.15 0.00 46.73 3.85
2423 2631 0.465097 CTGACATGTGGGCCTGATCC 60.465 60.000 1.15 0.00 0.00 3.36
2424 2632 0.254178 ACTGACATGTGGGCCTGATC 59.746 55.000 1.15 0.00 0.00 2.92
2425 2633 0.034767 CACTGACATGTGGGCCTGAT 60.035 55.000 1.15 0.00 34.56 2.90
2426 2634 1.376086 CACTGACATGTGGGCCTGA 59.624 57.895 1.15 0.00 34.56 3.86
2427 2635 2.338015 GCACTGACATGTGGGCCTG 61.338 63.158 1.15 0.00 38.31 4.85
2428 2636 2.034687 GCACTGACATGTGGGCCT 59.965 61.111 1.15 0.00 38.31 5.19
2429 2637 3.064324 GGCACTGACATGTGGGCC 61.064 66.667 13.22 13.22 38.31 5.80
2430 2638 3.064324 GGGCACTGACATGTGGGC 61.064 66.667 1.15 1.55 38.31 5.36
2431 2639 2.361610 GGGGCACTGACATGTGGG 60.362 66.667 1.15 0.00 38.31 4.61
2432 2640 2.361610 GGGGGCACTGACATGTGG 60.362 66.667 1.15 0.00 38.31 4.17
2433 2641 1.228521 TTGGGGGCACTGACATGTG 60.229 57.895 1.15 0.00 40.62 3.21
2434 2642 1.228552 GTTGGGGGCACTGACATGT 60.229 57.895 0.00 0.00 0.00 3.21
2435 2643 2.334946 CGTTGGGGGCACTGACATG 61.335 63.158 0.00 0.00 0.00 3.21
2436 2644 2.034066 CGTTGGGGGCACTGACAT 59.966 61.111 0.00 0.00 0.00 3.06
2437 2645 4.263572 CCGTTGGGGGCACTGACA 62.264 66.667 0.00 0.00 0.00 3.58
2454 2662 2.452813 CCTGACGTACGGCACATGC 61.453 63.158 22.42 0.00 41.14 4.06
2455 2663 1.809619 CCCTGACGTACGGCACATG 60.810 63.158 22.42 11.12 0.00 3.21
2456 2664 2.577059 CCCTGACGTACGGCACAT 59.423 61.111 22.42 0.00 0.00 3.21
2457 2665 3.687102 CCCCTGACGTACGGCACA 61.687 66.667 22.42 15.01 0.00 4.57
2458 2666 3.352338 CTCCCCTGACGTACGGCAC 62.352 68.421 22.42 10.95 0.00 5.01
2459 2667 3.066190 CTCCCCTGACGTACGGCA 61.066 66.667 24.75 24.75 0.00 5.69
2460 2668 4.509737 GCTCCCCTGACGTACGGC 62.510 72.222 21.06 18.72 0.00 5.68
2461 2669 2.754658 AGCTCCCCTGACGTACGG 60.755 66.667 21.06 1.19 0.00 4.02
2462 2670 2.490217 CAGCTCCCCTGACGTACG 59.510 66.667 15.01 15.01 44.64 3.67
2463 2671 1.889530 AAGCAGCTCCCCTGACGTAC 61.890 60.000 0.00 0.00 44.64 3.67
2464 2672 1.605058 GAAGCAGCTCCCCTGACGTA 61.605 60.000 0.00 0.00 44.64 3.57
2465 2673 2.925170 AAGCAGCTCCCCTGACGT 60.925 61.111 0.00 0.00 44.64 4.34
2466 2674 1.323271 TAGAAGCAGCTCCCCTGACG 61.323 60.000 0.00 0.00 44.64 4.35
2467 2675 0.905357 TTAGAAGCAGCTCCCCTGAC 59.095 55.000 0.00 0.00 44.64 3.51
2468 2676 1.556911 CTTTAGAAGCAGCTCCCCTGA 59.443 52.381 0.00 0.00 44.64 3.86
2469 2677 1.407989 CCTTTAGAAGCAGCTCCCCTG 60.408 57.143 0.00 0.00 44.67 4.45
2470 2678 0.915364 CCTTTAGAAGCAGCTCCCCT 59.085 55.000 0.00 0.00 0.00 4.79
2471 2679 0.106967 CCCTTTAGAAGCAGCTCCCC 60.107 60.000 0.00 0.00 0.00 4.81
2472 2680 0.106967 CCCCTTTAGAAGCAGCTCCC 60.107 60.000 0.00 0.00 0.00 4.30
2473 2681 0.912486 TCCCCTTTAGAAGCAGCTCC 59.088 55.000 0.00 0.00 0.00 4.70
2474 2682 1.557371 ACTCCCCTTTAGAAGCAGCTC 59.443 52.381 0.00 0.00 0.00 4.09
2475 2683 1.662686 ACTCCCCTTTAGAAGCAGCT 58.337 50.000 0.00 0.00 0.00 4.24
2476 2684 2.502130 ACTACTCCCCTTTAGAAGCAGC 59.498 50.000 0.00 0.00 0.00 5.25
2477 2685 3.680196 GCACTACTCCCCTTTAGAAGCAG 60.680 52.174 0.00 0.00 0.00 4.24
2478 2686 2.236395 GCACTACTCCCCTTTAGAAGCA 59.764 50.000 0.00 0.00 0.00 3.91
2479 2687 2.502130 AGCACTACTCCCCTTTAGAAGC 59.498 50.000 0.00 0.00 0.00 3.86
2480 2688 4.957327 ACTAGCACTACTCCCCTTTAGAAG 59.043 45.833 0.00 0.00 0.00 2.85
2481 2689 4.710375 CACTAGCACTACTCCCCTTTAGAA 59.290 45.833 0.00 0.00 0.00 2.10
2482 2690 4.017775 TCACTAGCACTACTCCCCTTTAGA 60.018 45.833 0.00 0.00 0.00 2.10
2483 2691 4.279145 TCACTAGCACTACTCCCCTTTAG 58.721 47.826 0.00 0.00 0.00 1.85
2484 2692 4.326600 TCACTAGCACTACTCCCCTTTA 57.673 45.455 0.00 0.00 0.00 1.85
2719 2928 3.635373 ACATACACGGGAGATACGTCAAT 59.365 43.478 0.00 0.00 43.58 2.57
2721 2930 2.646930 ACATACACGGGAGATACGTCA 58.353 47.619 0.00 0.00 43.58 4.35
2723 2932 2.756760 ACAACATACACGGGAGATACGT 59.243 45.455 0.00 0.00 46.82 3.57
2745 2954 5.266242 GCAGTAGGCGATTTAACTGATTTG 58.734 41.667 5.55 0.00 41.47 2.32
2766 2975 8.704668 TCTCCTCAACAGATAGTAATAAATGCA 58.295 33.333 0.00 0.00 0.00 3.96
2802 3011 1.686052 GTTGGCATTGTTGAAGGACCA 59.314 47.619 0.00 0.00 0.00 4.02
2817 3026 0.883370 AAAGTCTCCGTTCCGTTGGC 60.883 55.000 0.00 0.00 0.00 4.52
2869 3078 4.454678 TGCTAAGATCATGTTGGATGGAC 58.545 43.478 0.00 0.00 0.00 4.02
2876 3085 6.709397 AGATGTGGTATGCTAAGATCATGTTG 59.291 38.462 0.00 0.00 0.00 3.33
2931 3150 2.483889 GCTATTCGGAGGAGAAAGGTGG 60.484 54.545 0.00 0.00 33.43 4.61
2963 3182 0.603065 GACATCTGGTGTTTTGGCCC 59.397 55.000 0.00 0.00 42.36 5.80
3008 3227 2.224402 GGGAGTAGTTCCTGATGATGCC 60.224 54.545 0.00 0.00 45.98 4.40
3024 3243 3.790437 CAGCAGGCGATGGGGAGT 61.790 66.667 0.00 0.00 0.00 3.85
3119 3362 1.745087 CTGATGGTGCCCAATGTGTAC 59.255 52.381 0.00 0.00 36.95 2.90
3156 3399 6.176975 TGTGATAACTTGCGGTTTTATCTG 57.823 37.500 0.39 0.00 39.17 2.90
3195 3438 4.336713 GGGATGCTTGGACTTATCTTTGTC 59.663 45.833 0.00 0.00 0.00 3.18
3312 3558 3.915575 GGAAGAGTACCTCGCCGA 58.084 61.111 0.00 0.00 35.36 5.54
3388 3770 3.542704 CAGAATTTAGACCGTTCTCGTCG 59.457 47.826 0.00 0.00 32.75 5.12
3400 3782 5.854010 AGATACGTGGCTCAGAATTTAGA 57.146 39.130 0.00 0.00 0.00 2.10
3486 4174 1.685765 TCCTGAGCGTAGGCATGGT 60.686 57.895 10.48 0.00 43.41 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.