Multiple sequence alignment - TraesCS4B01G136400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G136400 chr4B 100.000 4324 0 0 1 4324 179851219 179846896 0.000000e+00 7986.0
1 TraesCS4B01G136400 chr4B 89.604 202 20 1 3763 3964 142066765 142066965 5.550000e-64 255.0
2 TraesCS4B01G136400 chr4D 94.121 1820 49 19 1788 3586 117734239 117732457 0.000000e+00 2715.0
3 TraesCS4B01G136400 chr4D 94.723 739 34 4 950 1684 117734990 117734253 0.000000e+00 1144.0
4 TraesCS4B01G136400 chr4D 94.004 517 23 4 3594 4102 117731199 117730683 0.000000e+00 776.0
5 TraesCS4B01G136400 chr4D 93.416 243 14 1 709 951 117737233 117736993 4.110000e-95 359.0
6 TraesCS4B01G136400 chr4D 93.833 227 14 0 4098 4324 117713767 117713541 4.140000e-90 342.0
7 TraesCS4B01G136400 chr4D 94.470 217 11 1 950 1166 117735485 117735270 2.490000e-87 333.0
8 TraesCS4B01G136400 chr4D 86.207 232 23 4 3736 3958 384687888 384688119 4.320000e-60 243.0
9 TraesCS4B01G136400 chr4D 100.000 38 0 0 4095 4132 129771084 129771047 2.160000e-08 71.3
10 TraesCS4B01G136400 chr4A 94.870 1267 47 8 1866 3122 456290880 456292138 0.000000e+00 1964.0
11 TraesCS4B01G136400 chr4A 89.008 1028 89 17 709 1729 456289817 456290827 0.000000e+00 1251.0
12 TraesCS4B01G136400 chr4A 83.576 688 96 14 1 683 724561720 724561045 2.840000e-176 628.0
13 TraesCS4B01G136400 chr4A 83.028 654 97 11 35 683 556683149 556683793 8.060000e-162 580.0
14 TraesCS4B01G136400 chr4A 81.858 678 92 24 1 663 628815136 628815797 3.800000e-150 542.0
15 TraesCS4B01G136400 chr4A 93.769 337 17 3 3153 3487 456292131 456292465 1.790000e-138 503.0
16 TraesCS4B01G136400 chr3B 84.615 702 96 8 1 697 240017392 240018086 0.000000e+00 688.0
17 TraesCS4B01G136400 chr3B 86.607 112 15 0 2762 2873 580784798 580784909 1.630000e-24 124.0
18 TraesCS4B01G136400 chr2B 84.451 701 84 18 1 683 682722765 682723458 0.000000e+00 667.0
19 TraesCS4B01G136400 chr2D 84.111 686 76 23 1 672 78560229 78560895 2.190000e-177 632.0
20 TraesCS4B01G136400 chr2D 89.109 202 21 1 3763 3964 396716375 396716575 2.580000e-62 250.0
21 TraesCS4B01G136400 chr2D 79.389 131 25 2 4003 4132 107439188 107439317 1.660000e-14 91.6
22 TraesCS4B01G136400 chr2D 91.071 56 5 0 1732 1787 620509078 620509133 4.640000e-10 76.8
23 TraesCS4B01G136400 chr2D 89.831 59 4 1 1729 1787 637950156 637950100 1.670000e-09 75.0
24 TraesCS4B01G136400 chr2D 84.615 78 7 5 1747 1821 33554334 33554409 6.000000e-09 73.1
25 TraesCS4B01G136400 chr1D 85.552 616 69 17 71 683 479218874 479218276 1.020000e-175 627.0
26 TraesCS4B01G136400 chr1B 87.020 547 52 16 8 546 117461511 117460976 2.230000e-167 599.0
27 TraesCS4B01G136400 chr1B 86.266 233 23 6 3736 3964 687333432 687333205 1.200000e-60 244.0
28 TraesCS4B01G136400 chr1B 97.872 47 1 0 1741 1787 356597656 356597702 9.970000e-12 82.4
29 TraesCS4B01G136400 chr3A 81.455 701 95 26 6 692 234208149 234208828 3.800000e-150 542.0
30 TraesCS4B01G136400 chr3A 87.500 112 14 0 2762 2873 584095384 584095495 3.510000e-26 130.0
31 TraesCS4B01G136400 chr5B 90.594 202 18 1 3763 3964 228091181 228091381 2.560000e-67 267.0
32 TraesCS4B01G136400 chr5B 91.379 58 3 2 1731 1787 690061419 690061475 1.290000e-10 78.7
33 TraesCS4B01G136400 chr5B 84.416 77 7 5 1747 1821 65872491 65872418 2.160000e-08 71.3
34 TraesCS4B01G136400 chr5B 90.385 52 3 2 4091 4140 419990035 419989984 2.790000e-07 67.6
35 TraesCS4B01G136400 chr5D 89.552 201 21 0 3763 3963 559737409 559737609 5.550000e-64 255.0
36 TraesCS4B01G136400 chr5D 79.845 129 24 2 4013 4140 355098315 355098188 4.600000e-15 93.5
37 TraesCS4B01G136400 chr2A 86.957 230 27 2 3739 3966 106113085 106112857 5.550000e-64 255.0
38 TraesCS4B01G136400 chr2A 92.857 56 2 2 1746 1800 675885097 675885151 3.580000e-11 80.5
39 TraesCS4B01G136400 chr6A 89.500 200 20 1 3766 3964 520389374 520389175 7.180000e-63 252.0
40 TraesCS4B01G136400 chr3D 85.714 119 17 0 2762 2880 442973481 442973599 4.540000e-25 126.0
41 TraesCS4B01G136400 chr3D 100.000 39 0 0 2933 2971 442973685 442973723 6.000000e-09 73.1
42 TraesCS4B01G136400 chrUn 85.366 82 10 2 4052 4132 290130029 290130109 2.770000e-12 84.2
43 TraesCS4B01G136400 chr7D 96.000 50 2 0 1738 1787 98621878 98621927 9.970000e-12 82.4
44 TraesCS4B01G136400 chr7D 91.379 58 3 2 1731 1787 52623774 52623718 1.290000e-10 78.7
45 TraesCS4B01G136400 chr7B 100.000 33 0 0 4100 4132 211680043 211680011 1.300000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G136400 chr4B 179846896 179851219 4323 True 7986.000000 7986 100.0000 1 4324 1 chr4B.!!$R1 4323
1 TraesCS4B01G136400 chr4D 117730683 117737233 6550 True 1065.400000 2715 94.1468 709 4102 5 chr4D.!!$R3 3393
2 TraesCS4B01G136400 chr4A 456289817 456292465 2648 False 1239.333333 1964 92.5490 709 3487 3 chr4A.!!$F3 2778
3 TraesCS4B01G136400 chr4A 724561045 724561720 675 True 628.000000 628 83.5760 1 683 1 chr4A.!!$R1 682
4 TraesCS4B01G136400 chr4A 556683149 556683793 644 False 580.000000 580 83.0280 35 683 1 chr4A.!!$F1 648
5 TraesCS4B01G136400 chr4A 628815136 628815797 661 False 542.000000 542 81.8580 1 663 1 chr4A.!!$F2 662
6 TraesCS4B01G136400 chr3B 240017392 240018086 694 False 688.000000 688 84.6150 1 697 1 chr3B.!!$F1 696
7 TraesCS4B01G136400 chr2B 682722765 682723458 693 False 667.000000 667 84.4510 1 683 1 chr2B.!!$F1 682
8 TraesCS4B01G136400 chr2D 78560229 78560895 666 False 632.000000 632 84.1110 1 672 1 chr2D.!!$F2 671
9 TraesCS4B01G136400 chr1D 479218276 479218874 598 True 627.000000 627 85.5520 71 683 1 chr1D.!!$R1 612
10 TraesCS4B01G136400 chr1B 117460976 117461511 535 True 599.000000 599 87.0200 8 546 1 chr1B.!!$R1 538
11 TraesCS4B01G136400 chr3A 234208149 234208828 679 False 542.000000 542 81.4550 6 692 1 chr3A.!!$F1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 647 0.030235 GTTCGCCGGCTGTTTTTCTT 59.970 50.0 26.68 0.0 0.0 2.52 F
834 869 0.393077 AGAACCTCCCATATTCGGCG 59.607 55.0 0.00 0.0 0.0 6.46 F
1261 3300 0.465460 AGCTTGCCGTTGTTTCTCCA 60.465 50.0 0.00 0.0 0.0 3.86 F
1755 3809 0.531200 CACCAACGTCTACTCCCTCC 59.469 60.0 0.00 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2368 4444 0.170561 CTTCTTGTGATGCCTGCAGC 59.829 55.0 8.66 4.57 44.14 5.25 R
2512 4591 0.807496 GAGCCACAGAAAGGTGATGC 59.193 55.0 0.00 0.00 41.32 3.91 R
3033 5124 0.824109 TCACGTCCATCACCATCCTC 59.176 55.0 0.00 0.00 0.00 3.71 R
3530 5628 0.389948 CTTAGCGGTGTGAGGGTGAC 60.390 60.0 0.00 0.00 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 116 3.830192 GTACGGGTCGTGGCCGAT 61.830 66.667 0.00 0.00 46.30 4.18
442 467 0.541863 GAGGAGAATGGCGGGAGAAA 59.458 55.000 0.00 0.00 0.00 2.52
453 478 1.075970 GGGAGAAAGGGGGAATGGC 60.076 63.158 0.00 0.00 0.00 4.40
460 485 1.506028 AAGGGGGAATGGCGGAGAAA 61.506 55.000 0.00 0.00 0.00 2.52
461 486 1.230212 GGGGGAATGGCGGAGAAAT 59.770 57.895 0.00 0.00 0.00 2.17
493 524 2.375345 GGGAAAGCAGGGGGATCGA 61.375 63.158 0.00 0.00 0.00 3.59
510 541 1.677966 GACGGGAAAAGGGCCTTCC 60.678 63.158 21.20 17.67 41.50 3.46
550 581 0.463116 ACGCACCTTTTCACTTCGGT 60.463 50.000 0.00 0.00 0.00 4.69
607 642 2.978010 CTGGTTCGCCGGCTGTTT 60.978 61.111 26.68 0.00 41.18 2.83
610 645 1.371267 GGTTCGCCGGCTGTTTTTC 60.371 57.895 26.68 7.42 0.00 2.29
612 647 0.030235 GTTCGCCGGCTGTTTTTCTT 59.970 50.000 26.68 0.00 0.00 2.52
619 654 1.581934 GGCTGTTTTTCTTGCCCAAC 58.418 50.000 0.00 0.00 39.49 3.77
638 673 1.134610 ACCCGGCGATAAACGAGATTT 60.135 47.619 9.30 0.00 45.77 2.17
641 676 3.744426 CCCGGCGATAAACGAGATTTTAT 59.256 43.478 9.30 0.00 45.77 1.40
699 734 1.256812 AAAAATGCCTTGAGGGGTCG 58.743 50.000 0.00 0.00 35.18 4.79
700 735 0.611896 AAAATGCCTTGAGGGGTCGG 60.612 55.000 0.00 0.00 35.18 4.79
701 736 3.645268 AATGCCTTGAGGGGTCGGC 62.645 63.158 0.00 0.00 42.78 5.54
726 761 7.035004 CGCCCTTTTTCTAATCAAATTCATGA 58.965 34.615 0.00 0.00 0.00 3.07
739 774 5.750352 AAATTCATGAATTTGGTGGCTCT 57.250 34.783 34.67 15.52 45.99 4.09
754 789 2.642311 TGGCTCTCCTACCAACATTGAA 59.358 45.455 0.00 0.00 31.46 2.69
834 869 0.393077 AGAACCTCCCATATTCGGCG 59.607 55.000 0.00 0.00 0.00 6.46
961 3000 2.315925 AATGTGATGCTCCACTACCG 57.684 50.000 9.72 0.00 37.89 4.02
1006 3045 0.696501 TGTTTCCCTTCCCACTAGCC 59.303 55.000 0.00 0.00 0.00 3.93
1027 3066 2.221906 TAACCTTCCTCGAGGCGCAC 62.222 60.000 27.39 0.96 40.65 5.34
1152 3191 4.971125 GGGCTATCCTGCGCGGTC 62.971 72.222 16.49 0.00 36.24 4.79
1253 3292 2.949106 CAGGTGAGCTTGCCGTTG 59.051 61.111 0.00 0.00 0.00 4.10
1261 3300 0.465460 AGCTTGCCGTTGTTTCTCCA 60.465 50.000 0.00 0.00 0.00 3.86
1265 3304 2.623878 TGCCGTTGTTTCTCCACTTA 57.376 45.000 0.00 0.00 0.00 2.24
1282 3321 3.761752 CACTTATTGGTTTCATCCGGGTT 59.238 43.478 0.00 0.00 0.00 4.11
1317 3356 6.091305 GTGTTTGATTTCTGATCGAGATGTGA 59.909 38.462 0.00 0.00 0.00 3.58
1394 3436 1.675310 CAGGCATTTCCGGAGCACA 60.675 57.895 15.29 0.00 40.77 4.57
1451 3493 1.453379 CCAGGCTTGGCTGGATCAG 60.453 63.158 31.53 9.65 43.08 2.90
1528 3571 5.411669 ACTTCGATTTATTCTTCGCCACTTT 59.588 36.000 0.00 0.00 35.39 2.66
1545 3588 6.215845 GCCACTTTGATGTTCTTTTATGTGT 58.784 36.000 0.00 0.00 0.00 3.72
1608 3652 3.251004 GCAATCTTGTGTTCGTCTTCCTT 59.749 43.478 0.00 0.00 0.00 3.36
1743 3797 3.393800 ACTTCTCTGATTGACACCAACG 58.606 45.455 0.00 0.00 34.72 4.10
1748 3802 3.909430 TCTGATTGACACCAACGTCTAC 58.091 45.455 0.00 0.00 36.82 2.59
1749 3803 3.572682 TCTGATTGACACCAACGTCTACT 59.427 43.478 0.00 0.00 36.82 2.57
1750 3804 3.909430 TGATTGACACCAACGTCTACTC 58.091 45.455 0.00 0.00 36.82 2.59
1751 3805 2.806608 TTGACACCAACGTCTACTCC 57.193 50.000 0.00 0.00 36.82 3.85
1752 3806 0.963962 TGACACCAACGTCTACTCCC 59.036 55.000 0.00 0.00 36.82 4.30
1753 3807 1.254954 GACACCAACGTCTACTCCCT 58.745 55.000 0.00 0.00 32.92 4.20
1754 3808 1.201880 GACACCAACGTCTACTCCCTC 59.798 57.143 0.00 0.00 32.92 4.30
1755 3809 0.531200 CACCAACGTCTACTCCCTCC 59.469 60.000 0.00 0.00 0.00 4.30
1756 3810 0.964358 ACCAACGTCTACTCCCTCCG 60.964 60.000 0.00 0.00 0.00 4.63
1757 3811 0.964358 CCAACGTCTACTCCCTCCGT 60.964 60.000 0.00 0.00 0.00 4.69
1760 3814 0.679321 ACGTCTACTCCCTCCGTTCC 60.679 60.000 0.00 0.00 0.00 3.62
1761 3815 0.679002 CGTCTACTCCCTCCGTTCCA 60.679 60.000 0.00 0.00 0.00 3.53
1762 3816 1.553706 GTCTACTCCCTCCGTTCCAA 58.446 55.000 0.00 0.00 0.00 3.53
1763 3817 1.897802 GTCTACTCCCTCCGTTCCAAA 59.102 52.381 0.00 0.00 0.00 3.28
1764 3818 2.500504 GTCTACTCCCTCCGTTCCAAAT 59.499 50.000 0.00 0.00 0.00 2.32
1765 3819 3.055312 GTCTACTCCCTCCGTTCCAAATT 60.055 47.826 0.00 0.00 0.00 1.82
1766 3820 4.161001 GTCTACTCCCTCCGTTCCAAATTA 59.839 45.833 0.00 0.00 0.00 1.40
1767 3821 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1768 3822 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1769 3823 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1770 3824 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1771 3825 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
1772 3826 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1773 3827 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1774 3828 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
1775 3829 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
1776 3830 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
1777 3831 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
1778 3832 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
1779 3833 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
1780 3834 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
1781 3835 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
1782 3836 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
1783 3837 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
1784 3838 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
1785 3839 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
1786 3840 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1802 3856 7.458409 TTTAGTTCACCTCGTGATAGTACTT 57.542 36.000 0.00 0.00 42.40 2.24
1844 3898 5.258841 TCCCTCAACACTTAATCTACGAGA 58.741 41.667 0.00 0.00 0.00 4.04
1855 3909 8.460428 CACTTAATCTACGAGAGGAAAGTACTT 58.540 37.037 1.12 1.12 29.17 2.24
1857 3911 8.804912 TTAATCTACGAGAGGAAAGTACTTCT 57.195 34.615 8.95 2.23 34.17 2.85
1860 3914 6.236409 TCTACGAGAGGAAAGTACTTCTCAA 58.764 40.000 20.53 9.36 41.14 3.02
1861 3915 5.986501 ACGAGAGGAAAGTACTTCTCAAT 57.013 39.130 20.53 8.08 41.14 2.57
2028 4082 5.305902 TCCCAGTAAGTTGTGTCTTGTCATA 59.694 40.000 0.00 0.00 0.00 2.15
2029 4083 6.013725 TCCCAGTAAGTTGTGTCTTGTCATAT 60.014 38.462 0.00 0.00 0.00 1.78
2030 4084 6.092670 CCCAGTAAGTTGTGTCTTGTCATATG 59.907 42.308 0.00 0.00 0.00 1.78
2031 4085 6.650807 CCAGTAAGTTGTGTCTTGTCATATGT 59.349 38.462 1.90 0.00 0.00 2.29
2032 4086 7.148573 CCAGTAAGTTGTGTCTTGTCATATGTC 60.149 40.741 1.90 0.00 0.00 3.06
2033 4087 7.384932 CAGTAAGTTGTGTCTTGTCATATGTCA 59.615 37.037 1.90 0.00 0.00 3.58
2034 4088 6.545504 AAGTTGTGTCTTGTCATATGTCAC 57.454 37.500 1.91 0.00 0.00 3.67
2035 4089 5.610398 AGTTGTGTCTTGTCATATGTCACA 58.390 37.500 1.91 0.00 33.22 3.58
2331 4407 0.896479 TGACACTGCAATGCCATGCT 60.896 50.000 1.53 0.00 46.54 3.79
2368 4444 5.727791 GCTGACATGAAGTAACTTATTGGCG 60.728 44.000 0.00 0.00 0.00 5.69
2512 4591 1.996191 GTCCTTGCAAGTTCGCTCTAG 59.004 52.381 24.35 6.47 0.00 2.43
2515 4594 2.005451 CTTGCAAGTTCGCTCTAGCAT 58.995 47.619 18.65 0.00 42.21 3.79
2516 4595 1.645034 TGCAAGTTCGCTCTAGCATC 58.355 50.000 2.44 0.00 42.21 3.91
2519 4601 1.929836 CAAGTTCGCTCTAGCATCACC 59.070 52.381 2.44 0.00 42.21 4.02
2645 4735 0.942884 GGTCACCAACTTCGACGTCC 60.943 60.000 10.58 0.00 0.00 4.79
2757 4847 1.229788 AGCCCAAGGAGGAAGAGCT 60.230 57.895 0.00 0.00 41.22 4.09
3003 5094 2.635427 GAGTTTTGGTCTCCTCTCCTGT 59.365 50.000 0.00 0.00 0.00 4.00
3060 5151 1.873591 GTGATGGACGTGAGCTGTTTT 59.126 47.619 0.00 0.00 0.00 2.43
3061 5152 1.872952 TGATGGACGTGAGCTGTTTTG 59.127 47.619 0.00 0.00 0.00 2.44
3062 5153 0.593128 ATGGACGTGAGCTGTTTTGC 59.407 50.000 0.00 0.00 0.00 3.68
3322 5413 2.508300 GGAAATGGCTAGGGGACAGTAA 59.492 50.000 0.00 0.00 35.79 2.24
3400 5496 6.262273 TGAAAAAGCAACCGTTAGATCTTCTT 59.738 34.615 0.00 0.00 0.00 2.52
3401 5497 5.864628 AAAGCAACCGTTAGATCTTCTTC 57.135 39.130 0.00 0.00 0.00 2.87
3402 5498 4.810191 AGCAACCGTTAGATCTTCTTCT 57.190 40.909 0.00 0.00 0.00 2.85
3443 5540 2.610727 GGTCTTTCTCCTCGTGACCTTG 60.611 54.545 0.00 0.00 42.63 3.61
3488 5585 2.096980 GCCTAACCGCTTATTTCCACAC 59.903 50.000 0.00 0.00 0.00 3.82
3504 5601 1.218316 CACCTCTAACCCTGGCGAC 59.782 63.158 0.00 0.00 0.00 5.19
3516 5613 0.237498 CTGGCGACGAACCCTTTTTC 59.763 55.000 0.00 0.00 0.00 2.29
3519 5616 1.335810 GGCGACGAACCCTTTTTCTTT 59.664 47.619 0.00 0.00 0.00 2.52
3530 5628 4.450080 ACCCTTTTTCTTTACGAACTAGCG 59.550 41.667 0.00 0.00 37.29 4.26
3586 5684 6.476378 AGATAAATAATCGGTAGCTTGCCAT 58.524 36.000 0.00 0.00 39.79 4.40
3587 5685 6.942576 AGATAAATAATCGGTAGCTTGCCATT 59.057 34.615 0.00 1.35 39.79 3.16
3589 5687 5.852282 AATAATCGGTAGCTTGCCATTTT 57.148 34.783 0.00 0.00 0.00 1.82
3590 5688 6.952773 AATAATCGGTAGCTTGCCATTTTA 57.047 33.333 0.00 0.00 0.00 1.52
3592 5690 4.900635 ATCGGTAGCTTGCCATTTTAAG 57.099 40.909 0.00 0.00 0.00 1.85
3605 6953 8.421249 TTGCCATTTTAAGATAGATAATGGGG 57.579 34.615 12.52 0.00 43.38 4.96
3647 6995 5.766590 TCCTTCCTTTCCTCTTGTTCTTTT 58.233 37.500 0.00 0.00 0.00 2.27
3708 7056 2.060980 CCCTCAGGTAGCCGCTCTT 61.061 63.158 0.00 0.00 0.00 2.85
3713 7061 1.040339 CAGGTAGCCGCTCTTCCTCT 61.040 60.000 0.00 0.00 40.19 3.69
3721 7069 1.545651 CCGCTCTTCCTCTTTTTGGGT 60.546 52.381 0.00 0.00 0.00 4.51
3725 7073 2.038557 CTCTTCCTCTTTTTGGGTCGGA 59.961 50.000 0.00 0.00 0.00 4.55
3731 7079 2.484264 CTCTTTTTGGGTCGGATCACAC 59.516 50.000 0.00 0.00 0.00 3.82
3751 7099 3.768757 CACTTCTTGGAAATATGCCCCAA 59.231 43.478 0.00 0.00 37.60 4.12
3830 7186 5.537300 ACTGCTATGATCCTGAAATACGT 57.463 39.130 0.00 0.00 0.00 3.57
3860 7216 5.699001 AGTGAAAAACTCATATGCACGTGTA 59.301 36.000 18.38 14.09 36.14 2.90
3908 7264 2.853707 TCCTAGTCTAGCCTCTTGGACT 59.146 50.000 0.86 0.00 41.22 3.85
3925 7281 2.808543 GGACTAGCTCAAGTGTTGTTGG 59.191 50.000 0.00 0.00 0.00 3.77
3941 7297 1.868498 GTTGGTGATCACGTTTTCCGA 59.132 47.619 19.33 1.70 40.70 4.55
3966 7322 8.594881 AATCTTAGGATATCGTTTAAGTGCAG 57.405 34.615 2.78 0.00 0.00 4.41
3981 7337 1.980772 GCAGGCCAAGAGCACCAAT 60.981 57.895 5.01 0.00 46.50 3.16
4005 7361 1.605058 TAGAGACCCTCAAGGCGCAC 61.605 60.000 10.83 0.00 40.58 5.34
4010 7366 3.414700 CCTCAAGGCGCACGACAC 61.415 66.667 10.83 0.00 0.00 3.67
4040 7396 4.996434 GGATCCGCCTCCGCCATG 62.996 72.222 0.00 0.00 0.00 3.66
4064 7420 2.569059 CATCGTGCCATCTTCAGGATT 58.431 47.619 0.00 0.00 37.06 3.01
4084 7440 5.449588 GGATTGATCAACGCATTCATCTTGT 60.450 40.000 11.07 0.00 0.00 3.16
4102 7458 2.738521 CCAGACCAACTGCCGTCG 60.739 66.667 0.00 0.00 44.52 5.12
4103 7459 2.338620 CAGACCAACTGCCGTCGA 59.661 61.111 0.00 0.00 39.86 4.20
4104 7460 2.022129 CAGACCAACTGCCGTCGAC 61.022 63.158 5.18 5.18 39.86 4.20
4105 7461 3.103911 GACCAACTGCCGTCGACG 61.104 66.667 30.33 30.33 39.44 5.12
4106 7462 3.836176 GACCAACTGCCGTCGACGT 62.836 63.158 33.49 14.95 37.74 4.34
4107 7463 3.103911 CCAACTGCCGTCGACGTC 61.104 66.667 33.49 24.43 37.74 4.34
4108 7464 2.354188 CAACTGCCGTCGACGTCA 60.354 61.111 33.49 27.73 37.74 4.35
4109 7465 2.354305 AACTGCCGTCGACGTCAC 60.354 61.111 33.49 23.08 37.74 3.67
4110 7466 3.836176 AACTGCCGTCGACGTCACC 62.836 63.158 33.49 19.64 37.74 4.02
4111 7467 4.337060 CTGCCGTCGACGTCACCA 62.337 66.667 33.49 22.61 37.74 4.17
4112 7468 4.634133 TGCCGTCGACGTCACCAC 62.634 66.667 33.49 16.87 37.74 4.16
4123 7479 2.770134 GTCACCACGACACCAAACA 58.230 52.632 0.00 0.00 44.69 2.83
4124 7480 1.088306 GTCACCACGACACCAAACAA 58.912 50.000 0.00 0.00 44.69 2.83
4125 7481 1.088306 TCACCACGACACCAAACAAC 58.912 50.000 0.00 0.00 0.00 3.32
4126 7482 0.247894 CACCACGACACCAAACAACG 60.248 55.000 0.00 0.00 0.00 4.10
4127 7483 1.298041 CCACGACACCAAACAACGC 60.298 57.895 0.00 0.00 0.00 4.84
4128 7484 1.298041 CACGACACCAAACAACGCC 60.298 57.895 0.00 0.00 0.00 5.68
4129 7485 1.745864 ACGACACCAAACAACGCCA 60.746 52.632 0.00 0.00 0.00 5.69
4130 7486 1.298041 CGACACCAAACAACGCCAC 60.298 57.895 0.00 0.00 0.00 5.01
4131 7487 1.065109 GACACCAAACAACGCCACC 59.935 57.895 0.00 0.00 0.00 4.61
4132 7488 2.025441 CACCAAACAACGCCACCG 59.975 61.111 0.00 0.00 41.14 4.94
4133 7489 2.124653 ACCAAACAACGCCACCGA 60.125 55.556 0.00 0.00 38.29 4.69
4134 7490 2.330041 CCAAACAACGCCACCGAC 59.670 61.111 0.00 0.00 38.29 4.79
4135 7491 2.184167 CCAAACAACGCCACCGACT 61.184 57.895 0.00 0.00 38.29 4.18
4136 7492 1.720694 CCAAACAACGCCACCGACTT 61.721 55.000 0.00 0.00 38.29 3.01
4137 7493 0.591236 CAAACAACGCCACCGACTTG 60.591 55.000 0.00 0.00 38.29 3.16
4138 7494 1.027792 AAACAACGCCACCGACTTGT 61.028 50.000 0.00 0.00 35.86 3.16
4139 7495 1.711060 AACAACGCCACCGACTTGTG 61.711 55.000 0.00 0.00 34.97 3.33
4140 7496 1.885388 CAACGCCACCGACTTGTGA 60.885 57.895 0.00 0.00 38.55 3.58
4141 7497 1.070786 AACGCCACCGACTTGTGAT 59.929 52.632 0.00 0.00 38.55 3.06
4142 7498 0.949105 AACGCCACCGACTTGTGATC 60.949 55.000 0.00 0.00 38.55 2.92
4143 7499 2.444624 CGCCACCGACTTGTGATCG 61.445 63.158 0.00 0.00 38.55 3.69
4144 7500 2.740714 GCCACCGACTTGTGATCGC 61.741 63.158 0.00 0.00 38.55 4.58
4145 7501 2.100631 CCACCGACTTGTGATCGCC 61.101 63.158 3.31 0.00 38.55 5.54
4146 7502 2.100631 CACCGACTTGTGATCGCCC 61.101 63.158 3.31 0.00 38.55 6.13
4147 7503 2.264480 CCGACTTGTGATCGCCCA 59.736 61.111 3.31 0.00 38.27 5.36
4148 7504 1.153369 CCGACTTGTGATCGCCCAT 60.153 57.895 3.31 0.00 38.27 4.00
4149 7505 1.154205 CCGACTTGTGATCGCCCATC 61.154 60.000 3.31 0.00 38.27 3.51
4150 7506 1.154205 CGACTTGTGATCGCCCATCC 61.154 60.000 3.31 0.00 31.96 3.51
4151 7507 0.107703 GACTTGTGATCGCCCATCCA 60.108 55.000 3.31 0.00 0.00 3.41
4152 7508 0.107508 ACTTGTGATCGCCCATCCAG 60.108 55.000 3.31 0.00 0.00 3.86
4153 7509 0.178767 CTTGTGATCGCCCATCCAGA 59.821 55.000 3.31 0.00 0.00 3.86
4154 7510 0.107703 TTGTGATCGCCCATCCAGAC 60.108 55.000 3.31 0.00 0.00 3.51
4155 7511 1.592669 GTGATCGCCCATCCAGACG 60.593 63.158 0.00 0.00 0.00 4.18
4156 7512 2.663188 GATCGCCCATCCAGACGC 60.663 66.667 0.00 0.00 0.00 5.19
4157 7513 3.445518 GATCGCCCATCCAGACGCA 62.446 63.158 0.00 0.00 0.00 5.24
4158 7514 2.721971 GATCGCCCATCCAGACGCAT 62.722 60.000 0.00 0.00 0.00 4.73
4159 7515 2.721971 ATCGCCCATCCAGACGCATC 62.722 60.000 0.00 0.00 0.00 3.91
4160 7516 2.507944 GCCCATCCAGACGCATCT 59.492 61.111 0.00 0.00 34.57 2.90
4167 7523 2.125952 CAGACGCATCTGTCGCCA 60.126 61.111 0.54 0.00 46.39 5.69
4168 7524 1.737735 CAGACGCATCTGTCGCCAA 60.738 57.895 0.54 0.00 46.39 4.52
4169 7525 1.005037 AGACGCATCTGTCGCCAAA 60.005 52.632 0.00 0.00 43.70 3.28
4170 7526 1.016130 AGACGCATCTGTCGCCAAAG 61.016 55.000 0.00 0.00 43.70 2.77
4171 7527 1.970917 GACGCATCTGTCGCCAAAGG 61.971 60.000 0.00 0.00 0.00 3.11
4172 7528 2.486966 GCATCTGTCGCCAAAGGC 59.513 61.111 0.00 0.00 46.75 4.35
4181 7537 3.379880 GCCAAAGGCTCCAATGCA 58.620 55.556 0.00 0.00 46.69 3.96
4182 7538 1.079612 GCCAAAGGCTCCAATGCAC 60.080 57.895 0.00 0.00 46.69 4.57
4183 7539 1.593265 CCAAAGGCTCCAATGCACC 59.407 57.895 0.00 0.00 34.04 5.01
4184 7540 1.186917 CCAAAGGCTCCAATGCACCA 61.187 55.000 0.00 0.00 34.04 4.17
4185 7541 0.899720 CAAAGGCTCCAATGCACCAT 59.100 50.000 0.00 0.00 34.04 3.55
4186 7542 0.899720 AAAGGCTCCAATGCACCATG 59.100 50.000 0.00 0.00 34.04 3.66
4187 7543 0.974010 AAGGCTCCAATGCACCATGG 60.974 55.000 11.19 11.19 34.04 3.66
4188 7544 2.497770 GCTCCAATGCACCATGGC 59.502 61.111 13.04 0.00 0.00 4.40
4189 7545 2.056223 GCTCCAATGCACCATGGCT 61.056 57.895 13.04 0.00 34.04 4.75
4190 7546 2.012902 GCTCCAATGCACCATGGCTC 62.013 60.000 13.04 4.04 34.04 4.70
4191 7547 0.395311 CTCCAATGCACCATGGCTCT 60.395 55.000 13.04 0.00 34.04 4.09
4192 7548 0.918258 TCCAATGCACCATGGCTCTA 59.082 50.000 13.04 0.00 34.04 2.43
4193 7549 1.284491 TCCAATGCACCATGGCTCTAA 59.716 47.619 13.04 0.00 34.04 2.10
4194 7550 1.679680 CCAATGCACCATGGCTCTAAG 59.320 52.381 13.04 0.00 34.04 2.18
4195 7551 2.646930 CAATGCACCATGGCTCTAAGA 58.353 47.619 13.04 0.00 34.04 2.10
4196 7552 2.338577 ATGCACCATGGCTCTAAGAC 57.661 50.000 13.04 0.00 34.04 3.01
4197 7553 0.253044 TGCACCATGGCTCTAAGACC 59.747 55.000 13.04 0.00 34.04 3.85
4198 7554 0.464554 GCACCATGGCTCTAAGACCC 60.465 60.000 13.04 0.00 0.00 4.46
4199 7555 0.179073 CACCATGGCTCTAAGACCCG 60.179 60.000 13.04 0.00 0.00 5.28
4200 7556 0.617820 ACCATGGCTCTAAGACCCGT 60.618 55.000 13.04 0.00 0.00 5.28
4201 7557 0.541863 CCATGGCTCTAAGACCCGTT 59.458 55.000 0.00 0.00 0.00 4.44
4202 7558 1.656652 CATGGCTCTAAGACCCGTTG 58.343 55.000 0.00 0.00 0.00 4.10
4203 7559 1.066143 CATGGCTCTAAGACCCGTTGT 60.066 52.381 0.00 0.00 0.00 3.32
4204 7560 0.606604 TGGCTCTAAGACCCGTTGTC 59.393 55.000 0.00 0.00 44.82 3.18
4212 7568 3.527360 GACCCGTTGTCGTCGACGT 62.527 63.158 34.40 15.27 46.48 4.34
4213 7569 2.170260 GACCCGTTGTCGTCGACGTA 62.170 60.000 34.40 22.82 46.48 3.57
4214 7570 1.510623 CCCGTTGTCGTCGACGTAG 60.511 63.158 34.40 21.33 46.48 3.51
4215 7571 1.205064 CCGTTGTCGTCGACGTAGT 59.795 57.895 34.40 0.00 46.48 2.73
4216 7572 0.438445 CCGTTGTCGTCGACGTAGTA 59.562 55.000 34.40 15.32 46.48 1.82
4217 7573 1.525784 CCGTTGTCGTCGACGTAGTAG 60.526 57.143 34.40 23.19 46.48 2.57
4218 7574 3.794360 CCGTTGTCGTCGACGTAGTAGA 61.794 54.545 34.40 14.15 46.48 2.59
4219 7575 2.159973 CGTTGTCGTCGACGTAGTAGAA 60.160 50.000 34.40 18.72 45.07 2.10
4220 7576 3.661678 CGTTGTCGTCGACGTAGTAGAAA 60.662 47.826 34.40 17.12 45.07 2.52
4221 7577 3.439932 TGTCGTCGACGTAGTAGAAAC 57.560 47.619 34.40 23.14 45.07 2.78
4222 7578 2.159973 TGTCGTCGACGTAGTAGAAACG 60.160 50.000 34.40 8.18 45.07 3.60
4223 7579 2.090658 GTCGTCGACGTAGTAGAAACGA 59.909 50.000 34.40 10.55 45.07 3.85
4224 7580 2.923655 TCGTCGACGTAGTAGAAACGAT 59.076 45.455 34.40 0.00 45.07 3.73
4225 7581 3.018246 CGTCGACGTAGTAGAAACGATG 58.982 50.000 29.08 0.00 45.07 3.84
4226 7582 2.775149 GTCGACGTAGTAGAAACGATGC 59.225 50.000 0.00 0.00 45.07 3.91
4227 7583 4.322269 GTCGACGTAGTAGAAACGATGCC 61.322 52.174 0.00 0.00 45.07 4.40
4228 7584 2.184385 ACGTAGTAGAAACGATGCCG 57.816 50.000 2.27 0.00 41.94 5.69
4229 7585 0.844503 CGTAGTAGAAACGATGCCGC 59.155 55.000 0.00 0.00 42.90 6.53
4230 7586 1.533338 CGTAGTAGAAACGATGCCGCT 60.533 52.381 0.00 0.00 42.90 5.52
4231 7587 2.117910 GTAGTAGAAACGATGCCGCTC 58.882 52.381 0.00 0.00 39.95 5.03
4232 7588 0.179108 AGTAGAAACGATGCCGCTCC 60.179 55.000 0.00 0.00 39.95 4.70
4233 7589 0.459585 GTAGAAACGATGCCGCTCCA 60.460 55.000 0.00 0.00 39.95 3.86
4234 7590 0.459585 TAGAAACGATGCCGCTCCAC 60.460 55.000 0.00 0.00 39.95 4.02
4235 7591 2.746277 AAACGATGCCGCTCCACC 60.746 61.111 0.00 0.00 39.95 4.61
4236 7592 3.254024 AAACGATGCCGCTCCACCT 62.254 57.895 0.00 0.00 39.95 4.00
4237 7593 3.665675 AACGATGCCGCTCCACCTC 62.666 63.158 0.00 0.00 39.95 3.85
4238 7594 3.842923 CGATGCCGCTCCACCTCT 61.843 66.667 0.00 0.00 0.00 3.69
4239 7595 2.202987 GATGCCGCTCCACCTCTG 60.203 66.667 0.00 0.00 0.00 3.35
4240 7596 3.746949 GATGCCGCTCCACCTCTGG 62.747 68.421 0.00 0.00 39.23 3.86
4242 7598 4.459089 GCCGCTCCACCTCTGGAC 62.459 72.222 0.00 0.00 42.15 4.02
4243 7599 3.775654 CCGCTCCACCTCTGGACC 61.776 72.222 0.00 0.00 42.15 4.46
4244 7600 3.775654 CGCTCCACCTCTGGACCC 61.776 72.222 0.00 0.00 42.15 4.46
4245 7601 3.403558 GCTCCACCTCTGGACCCC 61.404 72.222 0.00 0.00 42.15 4.95
4246 7602 2.452114 CTCCACCTCTGGACCCCT 59.548 66.667 0.00 0.00 42.15 4.79
4247 7603 1.229658 CTCCACCTCTGGACCCCTT 60.230 63.158 0.00 0.00 42.15 3.95
4248 7604 0.842467 CTCCACCTCTGGACCCCTTT 60.842 60.000 0.00 0.00 42.15 3.11
4249 7605 0.494551 TCCACCTCTGGACCCCTTTA 59.505 55.000 0.00 0.00 42.15 1.85
4250 7606 0.912486 CCACCTCTGGACCCCTTTAG 59.088 60.000 0.00 0.00 40.55 1.85
4251 7607 0.253327 CACCTCTGGACCCCTTTAGC 59.747 60.000 0.00 0.00 0.00 3.09
4252 7608 0.914902 ACCTCTGGACCCCTTTAGCC 60.915 60.000 0.00 0.00 0.00 3.93
4253 7609 0.621862 CCTCTGGACCCCTTTAGCCT 60.622 60.000 0.00 0.00 0.00 4.58
4254 7610 1.344087 CCTCTGGACCCCTTTAGCCTA 60.344 57.143 0.00 0.00 0.00 3.93
4255 7611 2.695585 CTCTGGACCCCTTTAGCCTAT 58.304 52.381 0.00 0.00 0.00 2.57
4256 7612 3.439558 CCTCTGGACCCCTTTAGCCTATA 60.440 52.174 0.00 0.00 0.00 1.31
4257 7613 3.579151 CTCTGGACCCCTTTAGCCTATAC 59.421 52.174 0.00 0.00 0.00 1.47
4258 7614 3.209152 TCTGGACCCCTTTAGCCTATACT 59.791 47.826 0.00 0.00 0.00 2.12
4259 7615 3.974642 CTGGACCCCTTTAGCCTATACTT 59.025 47.826 0.00 0.00 0.00 2.24
4260 7616 3.714798 TGGACCCCTTTAGCCTATACTTG 59.285 47.826 0.00 0.00 0.00 3.16
4261 7617 3.496337 GGACCCCTTTAGCCTATACTTGC 60.496 52.174 0.00 0.00 0.00 4.01
4262 7618 3.391626 GACCCCTTTAGCCTATACTTGCT 59.608 47.826 0.00 0.00 41.57 3.91
4263 7619 3.391626 ACCCCTTTAGCCTATACTTGCTC 59.608 47.826 0.00 0.00 39.00 4.26
4264 7620 3.648545 CCCCTTTAGCCTATACTTGCTCT 59.351 47.826 0.00 0.00 39.00 4.09
4265 7621 4.838986 CCCCTTTAGCCTATACTTGCTCTA 59.161 45.833 0.00 0.00 39.00 2.43
4266 7622 5.307196 CCCCTTTAGCCTATACTTGCTCTAA 59.693 44.000 0.00 0.00 39.00 2.10
4267 7623 6.459923 CCCTTTAGCCTATACTTGCTCTAAG 58.540 44.000 0.00 0.00 42.30 2.18
4268 7624 6.267928 CCCTTTAGCCTATACTTGCTCTAAGA 59.732 42.308 0.00 0.00 39.76 2.10
4269 7625 7.202011 CCCTTTAGCCTATACTTGCTCTAAGAA 60.202 40.741 0.00 0.00 39.76 2.52
4270 7626 7.654116 CCTTTAGCCTATACTTGCTCTAAGAAC 59.346 40.741 0.00 0.00 39.76 3.01
4271 7627 5.189659 AGCCTATACTTGCTCTAAGAACG 57.810 43.478 0.00 0.00 39.76 3.95
4272 7628 4.888239 AGCCTATACTTGCTCTAAGAACGA 59.112 41.667 0.00 0.00 39.76 3.85
4273 7629 5.536916 AGCCTATACTTGCTCTAAGAACGAT 59.463 40.000 0.00 0.00 39.76 3.73
4274 7630 5.631512 GCCTATACTTGCTCTAAGAACGATG 59.368 44.000 0.00 0.00 39.76 3.84
4275 7631 5.631512 CCTATACTTGCTCTAAGAACGATGC 59.368 44.000 0.00 0.00 39.76 3.91
4276 7632 2.622436 ACTTGCTCTAAGAACGATGCC 58.378 47.619 0.00 0.00 39.76 4.40
4277 7633 1.936547 CTTGCTCTAAGAACGATGCCC 59.063 52.381 0.00 0.00 38.76 5.36
4278 7634 0.178068 TGCTCTAAGAACGATGCCCC 59.822 55.000 0.00 0.00 0.00 5.80
4279 7635 0.533085 GCTCTAAGAACGATGCCCCC 60.533 60.000 0.00 0.00 0.00 5.40
4280 7636 0.249489 CTCTAAGAACGATGCCCCCG 60.249 60.000 0.00 0.00 0.00 5.73
4281 7637 0.685131 TCTAAGAACGATGCCCCCGA 60.685 55.000 0.00 0.00 0.00 5.14
4282 7638 0.249489 CTAAGAACGATGCCCCCGAG 60.249 60.000 0.00 0.00 0.00 4.63
4283 7639 0.685131 TAAGAACGATGCCCCCGAGA 60.685 55.000 0.00 0.00 0.00 4.04
4284 7640 1.961180 AAGAACGATGCCCCCGAGAG 61.961 60.000 0.00 0.00 0.00 3.20
4285 7641 2.363795 AACGATGCCCCCGAGAGA 60.364 61.111 0.00 0.00 0.00 3.10
4286 7642 2.356818 GAACGATGCCCCCGAGAGAG 62.357 65.000 0.00 0.00 0.00 3.20
4287 7643 2.835431 CGATGCCCCCGAGAGAGT 60.835 66.667 0.00 0.00 0.00 3.24
4288 7644 2.851071 CGATGCCCCCGAGAGAGTC 61.851 68.421 0.00 0.00 0.00 3.36
4289 7645 1.758514 GATGCCCCCGAGAGAGTCA 60.759 63.158 0.00 0.00 0.00 3.41
4290 7646 1.743321 GATGCCCCCGAGAGAGTCAG 61.743 65.000 0.00 0.00 0.00 3.51
4291 7647 2.363147 GCCCCCGAGAGAGTCAGT 60.363 66.667 0.00 0.00 0.00 3.41
4292 7648 2.716017 GCCCCCGAGAGAGTCAGTG 61.716 68.421 0.00 0.00 0.00 3.66
4293 7649 2.055042 CCCCCGAGAGAGTCAGTGG 61.055 68.421 0.00 0.00 0.00 4.00
4294 7650 2.716017 CCCCGAGAGAGTCAGTGGC 61.716 68.421 0.00 0.00 0.00 5.01
4295 7651 2.487428 CCGAGAGAGTCAGTGGCG 59.513 66.667 0.00 0.00 0.00 5.69
4296 7652 2.202544 CGAGAGAGTCAGTGGCGC 60.203 66.667 0.00 0.00 0.00 6.53
4297 7653 2.183046 GAGAGAGTCAGTGGCGCC 59.817 66.667 22.73 22.73 0.00 6.53
4298 7654 2.601666 AGAGAGTCAGTGGCGCCA 60.602 61.111 29.03 29.03 0.00 5.69
4299 7655 2.125753 GAGAGTCAGTGGCGCCAG 60.126 66.667 33.73 20.48 0.00 4.85
4300 7656 2.601666 AGAGTCAGTGGCGCCAGA 60.602 61.111 33.73 22.79 0.00 3.86
4301 7657 2.433318 GAGTCAGTGGCGCCAGAC 60.433 66.667 31.32 31.32 0.00 3.51
4302 7658 3.226429 GAGTCAGTGGCGCCAGACA 62.226 63.158 36.20 20.79 33.56 3.41
4314 7670 4.457496 CAGACACCGCCATCGCCT 62.457 66.667 0.00 0.00 0.00 5.52
4315 7671 4.457496 AGACACCGCCATCGCCTG 62.457 66.667 0.00 0.00 0.00 4.85
4316 7672 4.451150 GACACCGCCATCGCCTGA 62.451 66.667 0.00 0.00 0.00 3.86
4317 7673 3.740128 GACACCGCCATCGCCTGAT 62.740 63.158 0.00 0.00 34.28 2.90
4318 7674 2.969238 CACCGCCATCGCCTGATC 60.969 66.667 0.00 0.00 30.49 2.92
4319 7675 4.241555 ACCGCCATCGCCTGATCC 62.242 66.667 0.00 0.00 30.49 3.36
4322 7678 3.928779 GCCATCGCCTGATCCGGA 61.929 66.667 6.61 6.61 30.49 5.14
4323 7679 2.821685 CCATCGCCTGATCCGGAA 59.178 61.111 9.01 0.00 30.49 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 169 1.524002 GTGGCAGAGCAGGCAGATA 59.476 57.895 0.00 0.00 45.31 1.98
203 226 3.330720 CCAAGAAGGCCCGGGACT 61.331 66.667 28.33 28.33 32.88 3.85
377 402 1.137404 GCCGCCGAAGAAGTACGTA 59.863 57.895 0.00 0.00 0.00 3.57
411 436 0.556380 TTCTCCTCCCTCTCCCCTCT 60.556 60.000 0.00 0.00 0.00 3.69
412 437 0.565674 ATTCTCCTCCCTCTCCCCTC 59.434 60.000 0.00 0.00 0.00 4.30
442 467 1.289244 ATTTCTCCGCCATTCCCCCT 61.289 55.000 0.00 0.00 0.00 4.79
453 478 2.027192 TCCTCTGTTTCCCATTTCTCCG 60.027 50.000 0.00 0.00 0.00 4.63
460 485 2.059756 TTCCCTCCTCTGTTTCCCAT 57.940 50.000 0.00 0.00 0.00 4.00
461 486 1.705186 CTTTCCCTCCTCTGTTTCCCA 59.295 52.381 0.00 0.00 0.00 4.37
493 524 2.439245 GGAAGGCCCTTTTCCCGT 59.561 61.111 10.54 0.00 38.51 5.28
510 541 3.443925 TCTGCTCTGTCGGCGAGG 61.444 66.667 11.20 6.66 0.00 4.63
525 556 0.818040 GTGAAAAGGTGCGTGGGTCT 60.818 55.000 0.00 0.00 0.00 3.85
619 654 1.578583 AAATCTCGTTTATCGCCGGG 58.421 50.000 2.18 0.00 39.67 5.73
638 673 4.849310 GCCCAGTCGCGCCCATAA 62.849 66.667 0.00 0.00 0.00 1.90
696 731 1.063616 GATTAGAAAAAGGGCGCCGAC 59.936 52.381 22.54 7.61 0.00 4.79
697 732 1.339247 TGATTAGAAAAAGGGCGCCGA 60.339 47.619 22.54 0.00 0.00 5.54
698 733 1.091537 TGATTAGAAAAAGGGCGCCG 58.908 50.000 22.54 0.00 0.00 6.46
699 734 3.586100 TTTGATTAGAAAAAGGGCGCC 57.414 42.857 21.18 21.18 0.00 6.53
700 735 5.167845 TGAATTTGATTAGAAAAAGGGCGC 58.832 37.500 0.00 0.00 0.00 6.53
701 736 7.035004 TCATGAATTTGATTAGAAAAAGGGCG 58.965 34.615 0.00 0.00 0.00 6.13
702 737 8.776376 TTCATGAATTTGATTAGAAAAAGGGC 57.224 30.769 3.38 0.00 0.00 5.19
726 761 1.992557 TGGTAGGAGAGCCACCAAATT 59.007 47.619 0.00 0.00 40.24 1.82
734 769 3.350219 TTCAATGTTGGTAGGAGAGCC 57.650 47.619 0.00 0.00 0.00 4.70
766 801 0.548031 TGCCTTGCCATCTTAGGAGG 59.452 55.000 0.00 0.00 0.00 4.30
772 807 1.973281 CGTGGTGCCTTGCCATCTT 60.973 57.895 0.00 0.00 38.40 2.40
773 808 2.360350 CGTGGTGCCTTGCCATCT 60.360 61.111 0.00 0.00 38.40 2.90
846 881 0.108138 CCGGGGTTAAGAGCAGACAG 60.108 60.000 0.00 0.00 0.00 3.51
928 963 5.774690 AGCATCACATTTTCTTTGGGAAGTA 59.225 36.000 0.00 0.00 35.16 2.24
961 3000 1.005975 CGAGCACGCTTATACACAAGC 60.006 52.381 0.00 0.00 46.06 4.01
1006 3045 1.226603 CGCCTCGAGGAAGGTTACG 60.227 63.158 35.69 21.89 38.79 3.18
1027 3066 2.202440 CGTCGTACTGCTCCACCG 60.202 66.667 0.00 0.00 0.00 4.94
1152 3191 4.621991 TCTTCTTCTTCTTCTGGTTCGTG 58.378 43.478 0.00 0.00 0.00 4.35
1245 3284 1.757682 AAGTGGAGAAACAACGGCAA 58.242 45.000 0.00 0.00 0.00 4.52
1261 3300 3.732048 ACCCGGATGAAACCAATAAGT 57.268 42.857 0.73 0.00 0.00 2.24
1265 3304 0.894835 GCAACCCGGATGAAACCAAT 59.105 50.000 0.73 0.00 0.00 3.16
1282 3321 5.008514 TCAGAAATCAAACACAAAGATCGCA 59.991 36.000 0.00 0.00 0.00 5.10
1384 3426 0.033504 GTTCTGAACTGTGCTCCGGA 59.966 55.000 13.13 2.93 0.00 5.14
1394 3436 1.622811 CTGCCTCTCCTGTTCTGAACT 59.377 52.381 20.18 0.00 0.00 3.01
1451 3493 6.415798 CTAACTAAGCTGAAAGAAAGGCTC 57.584 41.667 0.00 0.00 34.07 4.70
1528 3571 8.450964 GCTTAGCTAACACATAAAAGAACATCA 58.549 33.333 0.86 0.00 0.00 3.07
1545 3588 3.006537 ACCAAGAACGTCAGCTTAGCTAA 59.993 43.478 6.35 5.94 36.40 3.09
1551 3594 2.622064 AAGACCAAGAACGTCAGCTT 57.378 45.000 0.00 0.00 32.41 3.74
1608 3652 1.153329 GTTCACCACACGTGTCCCA 60.153 57.895 20.49 0.00 43.51 4.37
1743 3797 1.553706 TTGGAACGGAGGGAGTAGAC 58.446 55.000 0.00 0.00 0.00 2.59
1748 3802 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
1749 3803 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1750 3804 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1751 3805 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1752 3806 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1753 3807 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
1754 3808 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
1755 3809 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
1756 3810 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
1757 3811 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
1760 3814 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
1761 3815 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
1762 3816 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
1763 3817 5.403466 GTGAACTAAAACCACGACGAGTAAT 59.597 40.000 0.00 0.00 0.00 1.89
1764 3818 4.739716 GTGAACTAAAACCACGACGAGTAA 59.260 41.667 0.00 0.00 0.00 2.24
1765 3819 4.290155 GTGAACTAAAACCACGACGAGTA 58.710 43.478 0.00 0.00 0.00 2.59
1766 3820 3.118542 GTGAACTAAAACCACGACGAGT 58.881 45.455 0.00 0.00 0.00 4.18
1767 3821 2.473984 GGTGAACTAAAACCACGACGAG 59.526 50.000 0.00 0.00 36.41 4.18
1768 3822 2.101249 AGGTGAACTAAAACCACGACGA 59.899 45.455 0.00 0.00 39.05 4.20
1769 3823 2.473984 GAGGTGAACTAAAACCACGACG 59.526 50.000 0.00 0.00 39.05 5.12
1773 3827 3.460103 TCACGAGGTGAACTAAAACCAC 58.540 45.455 0.00 0.00 39.78 4.16
1774 3828 3.823281 TCACGAGGTGAACTAAAACCA 57.177 42.857 0.00 0.00 39.78 3.67
1775 3829 5.476614 ACTATCACGAGGTGAACTAAAACC 58.523 41.667 2.20 0.00 45.96 3.27
1776 3830 7.311408 AGTACTATCACGAGGTGAACTAAAAC 58.689 38.462 2.20 0.00 45.96 2.43
1777 3831 7.458409 AGTACTATCACGAGGTGAACTAAAA 57.542 36.000 2.20 0.00 45.96 1.52
1778 3832 7.175467 TGAAGTACTATCACGAGGTGAACTAAA 59.825 37.037 2.20 0.00 45.96 1.85
1779 3833 6.656270 TGAAGTACTATCACGAGGTGAACTAA 59.344 38.462 2.20 0.00 45.96 2.24
1780 3834 6.093219 GTGAAGTACTATCACGAGGTGAACTA 59.907 42.308 16.89 0.00 45.96 2.24
1781 3835 5.008331 TGAAGTACTATCACGAGGTGAACT 58.992 41.667 2.20 0.00 45.96 3.01
1782 3836 5.094134 GTGAAGTACTATCACGAGGTGAAC 58.906 45.833 16.89 0.00 45.96 3.18
1783 3837 5.306532 GTGAAGTACTATCACGAGGTGAA 57.693 43.478 16.89 0.00 45.96 3.18
1784 3838 4.959596 GTGAAGTACTATCACGAGGTGA 57.040 45.455 16.89 0.38 46.90 4.02
1802 3856 8.116651 TGAGGGATTTTAAATTCGAAATGTGA 57.883 30.769 0.00 0.00 0.00 3.58
1844 3898 4.863131 CGCGTAATTGAGAAGTACTTTCCT 59.137 41.667 10.02 2.82 36.40 3.36
1855 3909 1.732941 AACCATGCGCGTAATTGAGA 58.267 45.000 8.43 0.00 0.00 3.27
1857 3911 3.004171 ACTAAACCATGCGCGTAATTGA 58.996 40.909 8.43 0.00 0.00 2.57
1860 3914 4.871557 TCTTAACTAAACCATGCGCGTAAT 59.128 37.500 8.43 0.00 0.00 1.89
1861 3915 4.244066 TCTTAACTAAACCATGCGCGTAA 58.756 39.130 8.43 0.00 0.00 3.18
1984 4038 2.285069 TTAAGGAGGAGGCCGCCA 60.285 61.111 28.68 2.81 46.18 5.69
2028 4082 6.531594 CGTATTGACTACTGACATTGTGACAT 59.468 38.462 0.00 0.00 0.00 3.06
2029 4083 5.861787 CGTATTGACTACTGACATTGTGACA 59.138 40.000 0.00 0.00 0.00 3.58
2030 4084 6.090783 TCGTATTGACTACTGACATTGTGAC 58.909 40.000 0.00 0.00 0.00 3.67
2031 4085 6.072119 ACTCGTATTGACTACTGACATTGTGA 60.072 38.462 0.00 0.00 0.00 3.58
2032 4086 6.093404 ACTCGTATTGACTACTGACATTGTG 58.907 40.000 0.00 0.00 0.00 3.33
2033 4087 6.268825 ACTCGTATTGACTACTGACATTGT 57.731 37.500 0.00 0.00 0.00 2.71
2034 4088 6.691818 GGTACTCGTATTGACTACTGACATTG 59.308 42.308 0.00 0.00 0.00 2.82
2035 4089 6.602406 AGGTACTCGTATTGACTACTGACATT 59.398 38.462 0.00 0.00 0.00 2.71
2244 4312 3.242316 GCGTGCATACTTACTTTGCTACC 60.242 47.826 0.00 0.00 37.28 3.18
2271 4339 4.941713 AGGATAATAGCTCCTCGAGGAAT 58.058 43.478 32.94 25.67 44.91 3.01
2331 4407 5.603170 TCATGTCAGCAAGATCACTCATA 57.397 39.130 0.00 0.00 0.00 2.15
2368 4444 0.170561 CTTCTTGTGATGCCTGCAGC 59.829 55.000 8.66 4.57 44.14 5.25
2433 4512 2.930385 TATCTCTTGCTGCCGCTGCC 62.930 60.000 18.38 2.80 36.33 4.85
2434 4513 1.522355 TATCTCTTGCTGCCGCTGC 60.522 57.895 14.83 14.83 36.97 5.25
2435 4514 1.156645 GGTATCTCTTGCTGCCGCTG 61.157 60.000 0.70 0.00 36.97 5.18
2436 4515 1.144936 GGTATCTCTTGCTGCCGCT 59.855 57.895 0.70 0.00 36.97 5.52
2512 4591 0.807496 GAGCCACAGAAAGGTGATGC 59.193 55.000 0.00 0.00 41.32 3.91
2515 4594 1.699083 TGATGAGCCACAGAAAGGTGA 59.301 47.619 0.00 0.00 41.32 4.02
2516 4595 1.808945 GTGATGAGCCACAGAAAGGTG 59.191 52.381 0.00 0.00 37.04 4.00
2519 4601 3.405831 TCTTGTGATGAGCCACAGAAAG 58.594 45.455 0.00 0.00 46.32 2.62
2645 4735 2.481449 GCTGGTCCACGTAGTAGGAATG 60.481 54.545 0.00 0.00 41.61 2.67
2731 4821 0.976073 CCTCCTTGGGCTCGACCTTA 60.976 60.000 4.41 0.00 39.10 2.69
2924 5014 2.693762 CGTCCTCGAAGCCCACGTA 61.694 63.158 0.00 0.00 39.71 3.57
2972 5062 2.668212 CAAAACTCAGGCGGCGGA 60.668 61.111 11.90 11.90 0.00 5.54
2985 5075 1.072331 GCACAGGAGAGGAGACCAAAA 59.928 52.381 0.00 0.00 0.00 2.44
3033 5124 0.824109 TCACGTCCATCACCATCCTC 59.176 55.000 0.00 0.00 0.00 3.71
3109 5200 4.016444 CGGTTGTACCTACTACCTACCAA 58.984 47.826 12.40 0.00 45.71 3.67
3110 5201 3.010138 ACGGTTGTACCTACTACCTACCA 59.990 47.826 12.40 0.00 45.71 3.25
3136 5227 5.934935 ACTATCTTTGGTTTGGTTGTACG 57.065 39.130 0.00 0.00 0.00 3.67
3400 5496 8.324306 AGACCATGAACAATATTTTCAGAGAGA 58.676 33.333 14.26 0.00 36.44 3.10
3401 5497 8.503458 AGACCATGAACAATATTTTCAGAGAG 57.497 34.615 14.26 8.34 36.44 3.20
3402 5498 8.868522 AAGACCATGAACAATATTTTCAGAGA 57.131 30.769 14.26 0.00 36.44 3.10
3443 5540 0.744771 GGTTGAGGGCGGTTCAGATC 60.745 60.000 0.00 0.00 0.00 2.75
3488 5585 1.601419 TTCGTCGCCAGGGTTAGAGG 61.601 60.000 0.00 0.00 0.00 3.69
3504 5601 5.413969 AGTTCGTAAAGAAAAAGGGTTCG 57.586 39.130 0.00 0.00 41.10 3.95
3516 5613 2.094854 AGGGTGACGCTAGTTCGTAAAG 60.095 50.000 0.00 0.00 43.42 1.85
3519 5616 1.089920 GAGGGTGACGCTAGTTCGTA 58.910 55.000 0.88 0.00 43.42 3.43
3530 5628 0.389948 CTTAGCGGTGTGAGGGTGAC 60.390 60.000 0.00 0.00 0.00 3.67
3572 5670 3.945346 TCTTAAAATGGCAAGCTACCGA 58.055 40.909 0.00 0.00 0.00 4.69
3586 5684 9.684702 AGGACTACCCCATTATCTATCTTAAAA 57.315 33.333 0.00 0.00 36.73 1.52
3587 5685 9.322769 GAGGACTACCCCATTATCTATCTTAAA 57.677 37.037 0.00 0.00 36.73 1.52
3589 5687 8.245929 AGAGGACTACCCCATTATCTATCTTA 57.754 38.462 0.00 0.00 36.73 2.10
3590 5688 7.020168 AGAGAGGACTACCCCATTATCTATCTT 59.980 40.741 0.00 0.00 36.73 2.40
3592 5690 6.605594 CAGAGAGGACTACCCCATTATCTATC 59.394 46.154 0.00 0.00 36.73 2.08
3647 6995 2.664568 CGAGTCGATTTTGGCGTTAAGA 59.335 45.455 6.73 0.00 0.00 2.10
3708 7056 1.982226 TGATCCGACCCAAAAAGAGGA 59.018 47.619 0.00 0.00 0.00 3.71
3713 7061 2.649531 AGTGTGATCCGACCCAAAAA 57.350 45.000 0.00 0.00 0.00 1.94
3721 7069 3.762407 TTTCCAAGAAGTGTGATCCGA 57.238 42.857 0.00 0.00 0.00 4.55
3725 7073 4.646492 GGGCATATTTCCAAGAAGTGTGAT 59.354 41.667 1.69 0.00 0.00 3.06
3731 7079 4.141869 CCTTTGGGGCATATTTCCAAGAAG 60.142 45.833 0.00 0.00 41.00 2.85
3751 7099 8.823220 AGTATGGAAATACAAACTATTGCCTT 57.177 30.769 0.00 0.00 40.34 4.35
3830 7186 7.307694 GTGCATATGAGTTTTTCACTGAATCA 58.692 34.615 6.97 0.00 38.99 2.57
3879 7235 6.724893 AGAGGCTAGACTAGGAATCTTTTC 57.275 41.667 11.48 0.00 0.00 2.29
3908 7264 3.552132 TCACCAACAACACTTGAGCTA 57.448 42.857 0.00 0.00 0.00 3.32
3925 7281 4.663636 AAGATTCGGAAAACGTGATCAC 57.336 40.909 16.21 16.21 44.69 3.06
3941 7297 7.657761 CCTGCACTTAAACGATATCCTAAGATT 59.342 37.037 15.64 0.58 33.67 2.40
3966 7322 1.598701 GACCATTGGTGCTCTTGGCC 61.599 60.000 14.44 0.00 40.92 5.36
4040 7396 1.667724 CTGAAGATGGCACGATGGAAC 59.332 52.381 0.00 0.00 0.00 3.62
4064 7420 3.374988 GGACAAGATGAATGCGTTGATCA 59.625 43.478 18.56 1.13 31.29 2.92
4084 7440 2.741092 GACGGCAGTTGGTCTGGA 59.259 61.111 0.00 0.00 43.78 3.86
4106 7462 1.088306 GTTGTTTGGTGTCGTGGTGA 58.912 50.000 0.00 0.00 0.00 4.02
4107 7463 0.247894 CGTTGTTTGGTGTCGTGGTG 60.248 55.000 0.00 0.00 0.00 4.17
4108 7464 1.984321 GCGTTGTTTGGTGTCGTGGT 61.984 55.000 0.00 0.00 0.00 4.16
4109 7465 1.298041 GCGTTGTTTGGTGTCGTGG 60.298 57.895 0.00 0.00 0.00 4.94
4110 7466 1.298041 GGCGTTGTTTGGTGTCGTG 60.298 57.895 0.00 0.00 0.00 4.35
4111 7467 1.745864 TGGCGTTGTTTGGTGTCGT 60.746 52.632 0.00 0.00 0.00 4.34
4112 7468 1.298041 GTGGCGTTGTTTGGTGTCG 60.298 57.895 0.00 0.00 0.00 4.35
4113 7469 1.065109 GGTGGCGTTGTTTGGTGTC 59.935 57.895 0.00 0.00 0.00 3.67
4114 7470 2.766400 CGGTGGCGTTGTTTGGTGT 61.766 57.895 0.00 0.00 0.00 4.16
4115 7471 2.025441 CGGTGGCGTTGTTTGGTG 59.975 61.111 0.00 0.00 0.00 4.17
4116 7472 2.124653 TCGGTGGCGTTGTTTGGT 60.125 55.556 0.00 0.00 0.00 3.67
4117 7473 1.720694 AAGTCGGTGGCGTTGTTTGG 61.721 55.000 0.00 0.00 0.00 3.28
4118 7474 0.591236 CAAGTCGGTGGCGTTGTTTG 60.591 55.000 0.00 0.00 0.00 2.93
4119 7475 1.027792 ACAAGTCGGTGGCGTTGTTT 61.028 50.000 0.00 0.00 28.62 2.83
4120 7476 1.450669 ACAAGTCGGTGGCGTTGTT 60.451 52.632 0.00 0.00 28.62 2.83
4121 7477 2.177580 CACAAGTCGGTGGCGTTGT 61.178 57.895 0.00 0.00 35.13 3.32
4122 7478 1.227999 ATCACAAGTCGGTGGCGTTG 61.228 55.000 0.00 0.00 39.27 4.10
4123 7479 0.949105 GATCACAAGTCGGTGGCGTT 60.949 55.000 0.00 0.00 39.27 4.84
4124 7480 1.374252 GATCACAAGTCGGTGGCGT 60.374 57.895 0.00 0.00 39.27 5.68
4125 7481 2.444624 CGATCACAAGTCGGTGGCG 61.445 63.158 0.00 0.00 39.27 5.69
4126 7482 2.740714 GCGATCACAAGTCGGTGGC 61.741 63.158 0.00 0.00 39.27 5.01
4127 7483 2.100631 GGCGATCACAAGTCGGTGG 61.101 63.158 0.00 0.00 39.27 4.61
4128 7484 2.100631 GGGCGATCACAAGTCGGTG 61.101 63.158 0.00 0.00 39.38 4.94
4129 7485 1.899437 ATGGGCGATCACAAGTCGGT 61.899 55.000 0.00 0.00 39.38 4.69
4130 7486 1.153369 ATGGGCGATCACAAGTCGG 60.153 57.895 0.00 0.00 39.38 4.79
4131 7487 1.154205 GGATGGGCGATCACAAGTCG 61.154 60.000 11.71 0.00 41.77 4.18
4132 7488 0.107703 TGGATGGGCGATCACAAGTC 60.108 55.000 11.71 0.00 31.91 3.01
4133 7489 0.107508 CTGGATGGGCGATCACAAGT 60.108 55.000 11.71 0.00 31.91 3.16
4134 7490 0.178767 TCTGGATGGGCGATCACAAG 59.821 55.000 11.71 5.91 31.91 3.16
4135 7491 0.107703 GTCTGGATGGGCGATCACAA 60.108 55.000 11.71 0.00 31.91 3.33
4136 7492 1.522092 GTCTGGATGGGCGATCACA 59.478 57.895 11.71 6.23 31.91 3.58
4137 7493 1.592669 CGTCTGGATGGGCGATCAC 60.593 63.158 11.71 0.54 31.91 3.06
4138 7494 2.814604 CGTCTGGATGGGCGATCA 59.185 61.111 11.71 0.00 31.91 2.92
4139 7495 2.663188 GCGTCTGGATGGGCGATC 60.663 66.667 0.20 0.20 0.00 3.69
4140 7496 2.721971 GATGCGTCTGGATGGGCGAT 62.722 60.000 0.00 0.00 0.00 4.58
4141 7497 3.445518 GATGCGTCTGGATGGGCGA 62.446 63.158 0.00 0.00 0.00 5.54
4142 7498 2.969238 GATGCGTCTGGATGGGCG 60.969 66.667 0.00 0.00 0.00 6.13
4143 7499 1.890979 CAGATGCGTCTGGATGGGC 60.891 63.158 25.59 0.00 46.56 5.36
4144 7500 4.451241 CAGATGCGTCTGGATGGG 57.549 61.111 25.59 1.19 46.56 4.00
4151 7507 1.005037 TTTGGCGACAGATGCGTCT 60.005 52.632 1.48 1.48 44.54 4.18
4152 7508 1.421485 CTTTGGCGACAGATGCGTC 59.579 57.895 0.00 0.00 44.54 5.19
4153 7509 2.034879 CCTTTGGCGACAGATGCGT 61.035 57.895 0.00 0.00 44.54 5.24
4154 7510 2.787249 CCTTTGGCGACAGATGCG 59.213 61.111 0.00 0.00 44.54 4.73
4155 7511 2.486966 GCCTTTGGCGACAGATGC 59.513 61.111 0.00 0.00 44.54 3.91
4165 7521 1.186917 TGGTGCATTGGAGCCTTTGG 61.187 55.000 4.87 0.00 0.00 3.28
4166 7522 0.899720 ATGGTGCATTGGAGCCTTTG 59.100 50.000 4.87 0.00 0.00 2.77
4167 7523 0.899720 CATGGTGCATTGGAGCCTTT 59.100 50.000 4.87 0.00 0.00 3.11
4168 7524 0.974010 CCATGGTGCATTGGAGCCTT 60.974 55.000 2.57 0.00 0.00 4.35
4169 7525 1.380785 CCATGGTGCATTGGAGCCT 60.381 57.895 2.57 0.00 0.00 4.58
4170 7526 3.085119 GCCATGGTGCATTGGAGCC 62.085 63.158 14.67 0.00 0.00 4.70
4171 7527 2.012902 GAGCCATGGTGCATTGGAGC 62.013 60.000 14.67 0.00 0.00 4.70
4172 7528 0.395311 AGAGCCATGGTGCATTGGAG 60.395 55.000 14.67 0.00 0.00 3.86
4173 7529 0.918258 TAGAGCCATGGTGCATTGGA 59.082 50.000 14.67 0.00 0.00 3.53
4174 7530 1.679680 CTTAGAGCCATGGTGCATTGG 59.320 52.381 14.67 8.50 0.00 3.16
4175 7531 2.357009 GTCTTAGAGCCATGGTGCATTG 59.643 50.000 14.67 0.66 0.00 2.82
4176 7532 2.648059 GTCTTAGAGCCATGGTGCATT 58.352 47.619 14.67 0.00 0.00 3.56
4177 7533 1.133976 GGTCTTAGAGCCATGGTGCAT 60.134 52.381 14.67 0.00 0.00 3.96
4178 7534 0.253044 GGTCTTAGAGCCATGGTGCA 59.747 55.000 14.67 0.00 0.00 4.57
4179 7535 3.086733 GGTCTTAGAGCCATGGTGC 57.913 57.895 14.67 5.71 0.00 5.01
4186 7542 0.458025 CGACAACGGGTCTTAGAGCC 60.458 60.000 19.55 19.55 45.64 4.70
4187 7543 0.243095 ACGACAACGGGTCTTAGAGC 59.757 55.000 2.39 2.39 44.68 4.09
4188 7544 1.465354 CGACGACAACGGGTCTTAGAG 60.465 57.143 7.71 0.00 44.68 2.43
4189 7545 0.518636 CGACGACAACGGGTCTTAGA 59.481 55.000 7.71 0.00 44.68 2.10
4190 7546 0.518636 TCGACGACAACGGGTCTTAG 59.481 55.000 0.00 0.18 44.68 2.18
4191 7547 0.238289 GTCGACGACAACGGGTCTTA 59.762 55.000 22.66 0.00 44.68 2.10
4192 7548 1.008079 GTCGACGACAACGGGTCTT 60.008 57.895 22.66 0.00 44.68 3.01
4193 7549 2.641559 GTCGACGACAACGGGTCT 59.358 61.111 22.66 0.00 44.68 3.85
4194 7550 2.170260 TACGTCGACGACAACGGGTC 62.170 60.000 41.52 0.00 42.99 4.46
4195 7551 2.175184 CTACGTCGACGACAACGGGT 62.175 60.000 41.52 20.54 42.99 5.28
4196 7552 1.510623 CTACGTCGACGACAACGGG 60.511 63.158 41.52 18.72 42.99 5.28
4197 7553 0.438445 TACTACGTCGACGACAACGG 59.562 55.000 41.52 24.05 42.99 4.44
4198 7554 1.386748 TCTACTACGTCGACGACAACG 59.613 52.381 41.52 25.07 44.22 4.10
4199 7555 3.439932 TTCTACTACGTCGACGACAAC 57.560 47.619 41.52 1.62 43.02 3.32
4200 7556 3.661678 CGTTTCTACTACGTCGACGACAA 60.662 47.826 41.52 24.67 43.02 3.18
4201 7557 2.159973 CGTTTCTACTACGTCGACGACA 60.160 50.000 41.52 26.75 43.02 4.35
4202 7558 2.090658 TCGTTTCTACTACGTCGACGAC 59.909 50.000 41.52 25.11 43.02 4.34
4203 7559 2.324860 TCGTTTCTACTACGTCGACGA 58.675 47.619 41.52 24.16 43.02 4.20
4204 7560 2.769387 TCGTTTCTACTACGTCGACG 57.231 50.000 34.58 34.58 46.33 5.12
4205 7561 2.775149 GCATCGTTTCTACTACGTCGAC 59.225 50.000 5.18 5.18 39.84 4.20
4206 7562 2.223112 GGCATCGTTTCTACTACGTCGA 60.223 50.000 0.00 0.00 39.84 4.20
4207 7563 2.107178 GGCATCGTTTCTACTACGTCG 58.893 52.381 0.00 0.00 39.84 5.12
4208 7564 2.107178 CGGCATCGTTTCTACTACGTC 58.893 52.381 0.00 0.00 39.84 4.34
4209 7565 1.796617 GCGGCATCGTTTCTACTACGT 60.797 52.381 0.00 0.00 39.84 3.57
4210 7566 0.844503 GCGGCATCGTTTCTACTACG 59.155 55.000 0.00 0.00 40.23 3.51
4211 7567 2.117910 GAGCGGCATCGTTTCTACTAC 58.882 52.381 1.45 0.00 38.89 2.73
4212 7568 1.066605 GGAGCGGCATCGTTTCTACTA 59.933 52.381 1.45 0.00 38.89 1.82
4213 7569 0.179108 GGAGCGGCATCGTTTCTACT 60.179 55.000 1.45 0.00 38.89 2.57
4214 7570 0.459585 TGGAGCGGCATCGTTTCTAC 60.460 55.000 1.45 0.00 38.89 2.59
4215 7571 0.459585 GTGGAGCGGCATCGTTTCTA 60.460 55.000 1.45 0.00 38.89 2.10
4216 7572 1.741770 GTGGAGCGGCATCGTTTCT 60.742 57.895 1.45 0.00 38.89 2.52
4217 7573 2.750888 GGTGGAGCGGCATCGTTTC 61.751 63.158 1.45 0.00 38.89 2.78
4218 7574 2.746277 GGTGGAGCGGCATCGTTT 60.746 61.111 1.45 0.00 38.89 3.60
4219 7575 3.665675 GAGGTGGAGCGGCATCGTT 62.666 63.158 1.45 0.00 38.89 3.85
4220 7576 4.148825 GAGGTGGAGCGGCATCGT 62.149 66.667 1.45 0.00 38.89 3.73
4221 7577 3.842923 AGAGGTGGAGCGGCATCG 61.843 66.667 1.45 0.00 39.81 3.84
4222 7578 2.202987 CAGAGGTGGAGCGGCATC 60.203 66.667 1.45 0.00 0.00 3.91
4231 7587 0.912486 CTAAAGGGGTCCAGAGGTGG 59.088 60.000 0.00 0.00 46.63 4.61
4232 7588 0.253327 GCTAAAGGGGTCCAGAGGTG 59.747 60.000 0.00 0.00 0.00 4.00
4233 7589 0.914902 GGCTAAAGGGGTCCAGAGGT 60.915 60.000 0.00 0.00 0.00 3.85
4234 7590 0.621862 AGGCTAAAGGGGTCCAGAGG 60.622 60.000 0.00 0.00 0.00 3.69
4235 7591 2.176247 TAGGCTAAAGGGGTCCAGAG 57.824 55.000 0.00 0.00 0.00 3.35
4236 7592 2.889522 ATAGGCTAAAGGGGTCCAGA 57.110 50.000 0.00 0.00 0.00 3.86
4237 7593 3.588569 AGTATAGGCTAAAGGGGTCCAG 58.411 50.000 0.00 0.00 0.00 3.86
4238 7594 3.714798 CAAGTATAGGCTAAAGGGGTCCA 59.285 47.826 0.00 0.00 0.00 4.02
4239 7595 3.496337 GCAAGTATAGGCTAAAGGGGTCC 60.496 52.174 0.00 0.00 0.00 4.46
4240 7596 3.391626 AGCAAGTATAGGCTAAAGGGGTC 59.608 47.826 0.00 0.00 38.90 4.46
4241 7597 3.391626 GAGCAAGTATAGGCTAAAGGGGT 59.608 47.826 0.00 0.00 41.22 4.95
4242 7598 3.648545 AGAGCAAGTATAGGCTAAAGGGG 59.351 47.826 0.00 0.00 41.22 4.79
4243 7599 4.965200 AGAGCAAGTATAGGCTAAAGGG 57.035 45.455 0.00 0.00 41.22 3.95
4244 7600 7.291411 TCTTAGAGCAAGTATAGGCTAAAGG 57.709 40.000 0.00 0.00 41.22 3.11
4245 7601 7.380065 CGTTCTTAGAGCAAGTATAGGCTAAAG 59.620 40.741 0.00 0.00 41.22 1.85
4246 7602 7.067859 TCGTTCTTAGAGCAAGTATAGGCTAAA 59.932 37.037 0.00 0.00 41.22 1.85
4247 7603 6.544931 TCGTTCTTAGAGCAAGTATAGGCTAA 59.455 38.462 0.00 0.00 41.22 3.09
4248 7604 6.060136 TCGTTCTTAGAGCAAGTATAGGCTA 58.940 40.000 0.00 0.00 41.22 3.93
4249 7605 4.888239 TCGTTCTTAGAGCAAGTATAGGCT 59.112 41.667 0.00 0.00 44.48 4.58
4250 7606 5.184340 TCGTTCTTAGAGCAAGTATAGGC 57.816 43.478 0.00 0.00 35.58 3.93
4251 7607 5.631512 GCATCGTTCTTAGAGCAAGTATAGG 59.368 44.000 0.00 0.00 35.58 2.57
4252 7608 5.631512 GGCATCGTTCTTAGAGCAAGTATAG 59.368 44.000 0.00 0.00 35.58 1.31
4253 7609 5.509163 GGGCATCGTTCTTAGAGCAAGTATA 60.509 44.000 0.00 0.00 35.58 1.47
4254 7610 4.372656 GGCATCGTTCTTAGAGCAAGTAT 58.627 43.478 0.00 0.00 35.58 2.12
4255 7611 3.430374 GGGCATCGTTCTTAGAGCAAGTA 60.430 47.826 0.00 0.00 35.58 2.24
4256 7612 2.622436 GGCATCGTTCTTAGAGCAAGT 58.378 47.619 0.00 0.00 35.58 3.16
4257 7613 1.936547 GGGCATCGTTCTTAGAGCAAG 59.063 52.381 0.00 0.00 35.38 4.01
4258 7614 1.406887 GGGGCATCGTTCTTAGAGCAA 60.407 52.381 0.00 0.00 0.00 3.91
4259 7615 0.178068 GGGGCATCGTTCTTAGAGCA 59.822 55.000 0.00 0.00 0.00 4.26
4260 7616 0.533085 GGGGGCATCGTTCTTAGAGC 60.533 60.000 0.00 0.00 0.00 4.09
4261 7617 0.249489 CGGGGGCATCGTTCTTAGAG 60.249 60.000 0.00 0.00 0.00 2.43
4262 7618 0.685131 TCGGGGGCATCGTTCTTAGA 60.685 55.000 0.00 0.00 0.00 2.10
4263 7619 0.249489 CTCGGGGGCATCGTTCTTAG 60.249 60.000 0.00 0.00 0.00 2.18
4264 7620 0.685131 TCTCGGGGGCATCGTTCTTA 60.685 55.000 0.00 0.00 0.00 2.10
4265 7621 1.961180 CTCTCGGGGGCATCGTTCTT 61.961 60.000 0.00 0.00 0.00 2.52
4266 7622 2.363795 TCTCGGGGGCATCGTTCT 60.364 61.111 0.00 0.00 0.00 3.01
4267 7623 2.107141 CTCTCGGGGGCATCGTTC 59.893 66.667 0.00 0.00 0.00 3.95
4268 7624 2.363795 TCTCTCGGGGGCATCGTT 60.364 61.111 0.00 0.00 0.00 3.85
4269 7625 2.835431 CTCTCTCGGGGGCATCGT 60.835 66.667 0.00 0.00 0.00 3.73
4270 7626 2.835431 ACTCTCTCGGGGGCATCG 60.835 66.667 0.00 0.00 0.00 3.84
4271 7627 1.743321 CTGACTCTCTCGGGGGCATC 61.743 65.000 0.00 0.00 0.00 3.91
4272 7628 1.760086 CTGACTCTCTCGGGGGCAT 60.760 63.158 0.00 0.00 0.00 4.40
4273 7629 2.363018 CTGACTCTCTCGGGGGCA 60.363 66.667 0.00 0.00 0.00 5.36
4274 7630 2.363147 ACTGACTCTCTCGGGGGC 60.363 66.667 0.00 0.00 0.00 5.80
4275 7631 2.055042 CCACTGACTCTCTCGGGGG 61.055 68.421 0.00 0.00 42.91 5.40
4276 7632 2.716017 GCCACTGACTCTCTCGGGG 61.716 68.421 0.00 0.00 0.00 5.73
4277 7633 2.888863 GCCACTGACTCTCTCGGG 59.111 66.667 0.00 0.00 0.00 5.14
4278 7634 2.487428 CGCCACTGACTCTCTCGG 59.513 66.667 0.00 0.00 0.00 4.63
4279 7635 2.202544 GCGCCACTGACTCTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
4280 7636 2.183046 GGCGCCACTGACTCTCTC 59.817 66.667 24.80 0.00 0.00 3.20
4281 7637 2.601666 TGGCGCCACTGACTCTCT 60.602 61.111 29.03 0.00 0.00 3.10
4282 7638 2.125753 CTGGCGCCACTGACTCTC 60.126 66.667 29.03 0.00 0.00 3.20
4283 7639 2.601666 TCTGGCGCCACTGACTCT 60.602 61.111 29.03 0.00 0.00 3.24
4284 7640 2.433318 GTCTGGCGCCACTGACTC 60.433 66.667 31.18 14.02 36.67 3.36
4285 7641 3.233980 TGTCTGGCGCCACTGACT 61.234 61.111 35.04 0.00 39.28 3.41
4286 7642 3.044305 GTGTCTGGCGCCACTGAC 61.044 66.667 31.57 31.57 39.08 3.51
4287 7643 4.314440 GGTGTCTGGCGCCACTGA 62.314 66.667 29.03 20.62 46.73 3.41
4297 7653 4.457496 AGGCGATGGCGGTGTCTG 62.457 66.667 0.00 0.00 41.24 3.51
4298 7654 4.457496 CAGGCGATGGCGGTGTCT 62.457 66.667 0.00 0.00 41.24 3.41
4299 7655 3.740128 ATCAGGCGATGGCGGTGTC 62.740 63.158 0.00 0.00 41.24 3.67
4300 7656 3.740128 GATCAGGCGATGGCGGTGT 62.740 63.158 0.00 0.00 41.24 4.16
4301 7657 2.969238 GATCAGGCGATGGCGGTG 60.969 66.667 0.00 0.00 41.24 4.94
4302 7658 4.241555 GGATCAGGCGATGGCGGT 62.242 66.667 0.00 0.00 41.24 5.68
4305 7661 3.460672 TTCCGGATCAGGCGATGGC 62.461 63.158 4.15 0.00 38.90 4.40
4306 7662 2.821685 TTCCGGATCAGGCGATGG 59.178 61.111 4.15 0.00 29.66 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.