Multiple sequence alignment - TraesCS4B01G135900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G135900 chr4B 100.000 4562 0 0 614 5175 178854324 178849763 0.000000e+00 8425
1 TraesCS4B01G135900 chr4B 100.000 329 0 0 1 329 178854937 178854609 4.430000e-170 608
2 TraesCS4B01G135900 chr4B 76.955 243 47 9 1075 1312 418752298 418752536 4.210000e-26 130
3 TraesCS4B01G135900 chr4A 94.152 1710 61 19 641 2321 459627268 459628967 0.000000e+00 2567
4 TraesCS4B01G135900 chr4A 94.390 1123 45 8 2569 3675 459629399 459630519 0.000000e+00 1709
5 TraesCS4B01G135900 chr4A 96.996 932 24 3 3712 4642 459630823 459631751 0.000000e+00 1563
6 TraesCS4B01G135900 chr4A 97.170 212 6 0 4964 5175 459631882 459632093 4.930000e-95 359
7 TraesCS4B01G135900 chr4A 89.641 251 26 0 1 251 459625258 459625508 2.320000e-83 320
8 TraesCS4B01G135900 chr4A 92.655 177 7 2 2384 2557 459628977 459629150 3.090000e-62 250
9 TraesCS4B01G135900 chr4A 77.489 231 46 6 1075 1302 132703126 132702899 3.250000e-27 134
10 TraesCS4B01G135900 chr4D 92.355 1452 55 23 641 2063 116823438 116822014 0.000000e+00 2015
11 TraesCS4B01G135900 chr4D 92.175 1329 52 19 2384 3675 116821575 116820262 0.000000e+00 1831
12 TraesCS4B01G135900 chr4D 91.398 930 31 22 3718 4645 116819693 116818811 0.000000e+00 1229
13 TraesCS4B01G135900 chr4D 93.436 259 15 2 2064 2321 116821842 116821585 2.920000e-102 383
14 TraesCS4B01G135900 chr4D 87.708 301 33 1 1 297 116889214 116888914 1.070000e-91 348
15 TraesCS4B01G135900 chr4D 95.755 212 9 0 4964 5175 116818683 116818472 4.960000e-90 342
16 TraesCS4B01G135900 chr2D 95.578 294 13 0 4679 4972 590369245 590369538 6.070000e-129 472
17 TraesCS4B01G135900 chr2D 77.350 234 48 5 1075 1305 35686231 35686000 3.250000e-27 134
18 TraesCS4B01G135900 chr1B 96.503 286 9 1 4680 4965 687414945 687415229 6.070000e-129 472
19 TraesCS4B01G135900 chr2A 96.809 282 8 1 4683 4964 162455899 162455619 2.180000e-128 470
20 TraesCS4B01G135900 chr2A 76.923 234 49 5 1075 1305 38915265 38915034 1.510000e-25 128
21 TraesCS4B01G135900 chr5B 96.154 286 11 0 4680 4965 681158195 681158480 7.850000e-128 468
22 TraesCS4B01G135900 chr5B 96.154 286 10 1 4679 4964 439263993 439263709 2.820000e-127 466
23 TraesCS4B01G135900 chr5B 84.301 465 57 12 3718 4177 282268005 282268458 1.710000e-119 440
24 TraesCS4B01G135900 chr5B 91.176 238 21 0 1058 1295 282264887 282265124 1.800000e-84 324
25 TraesCS4B01G135900 chr5B 76.509 613 100 28 3038 3618 282267155 282267755 1.410000e-75 294
26 TraesCS4B01G135900 chr5B 91.753 97 8 0 1416 1512 282265253 282265349 9.040000e-28 135
27 TraesCS4B01G135900 chr5B 97.403 77 2 0 2161 2237 282265977 282266053 1.170000e-26 132
28 TraesCS4B01G135900 chr3B 96.154 286 11 0 4680 4965 17350287 17350572 7.850000e-128 468
29 TraesCS4B01G135900 chr5D 96.154 286 10 1 4679 4964 450609053 450608769 2.820000e-127 466
30 TraesCS4B01G135900 chr5D 83.726 467 57 15 3718 4177 249526719 249527173 1.720000e-114 424
31 TraesCS4B01G135900 chr5D 90.336 238 23 0 1058 1295 249523616 249523853 3.890000e-81 313
32 TraesCS4B01G135900 chr5D 76.672 613 101 27 3038 3618 249525874 249526476 8.420000e-78 302
33 TraesCS4B01G135900 chr5D 91.753 97 8 0 1416 1512 249523992 249524088 9.040000e-28 135
34 TraesCS4B01G135900 chr5D 97.403 77 2 0 2161 2237 249524677 249524753 1.170000e-26 132
35 TraesCS4B01G135900 chr2B 95.517 290 13 0 4680 4969 140150341 140150052 1.010000e-126 464
36 TraesCS4B01G135900 chr2B 94.966 298 12 3 4677 4972 799259756 799259460 1.010000e-126 464
37 TraesCS4B01G135900 chr5A 82.627 472 62 14 3717 4177 332218664 332219126 2.900000e-107 399
38 TraesCS4B01G135900 chr5A 90.336 238 23 0 1058 1295 332215293 332215530 3.890000e-81 313
39 TraesCS4B01G135900 chr5A 76.183 613 104 27 3038 3618 332217819 332218421 8.480000e-73 285
40 TraesCS4B01G135900 chr5A 94.845 97 5 0 1416 1512 332215658 332215754 8.980000e-33 152
41 TraesCS4B01G135900 chr5A 97.403 77 2 0 2161 2237 332216397 332216473 1.170000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G135900 chr4B 178849763 178854937 5174 True 4516.5 8425 100.000000 1 5175 2 chr4B.!!$R1 5174
1 TraesCS4B01G135900 chr4A 459625258 459632093 6835 False 1128.0 2567 94.167333 1 5175 6 chr4A.!!$F1 5174
2 TraesCS4B01G135900 chr4D 116818472 116823438 4966 True 1160.0 2015 93.023800 641 5175 5 chr4D.!!$R2 4534
3 TraesCS4B01G135900 chr5B 282264887 282268458 3571 False 265.0 440 88.228400 1058 4177 5 chr5B.!!$F2 3119
4 TraesCS4B01G135900 chr5D 249523616 249527173 3557 False 261.2 424 87.978000 1058 4177 5 chr5D.!!$F1 3119
5 TraesCS4B01G135900 chr5A 332215293 332219126 3833 False 256.2 399 88.278800 1058 4177 5 chr5A.!!$F1 3119

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.104356 TGGTCTAGGGGGACAAACCA 60.104 55.000 0.00 0.0 41.2 3.67 F
268 1869 0.389296 TTCGACACACCATACAGCGG 60.389 55.000 0.00 0.0 0.0 5.52 F
271 1872 0.953471 GACACACCATACAGCGGCAA 60.953 55.000 1.45 0.0 0.0 4.52 F
1769 3556 1.348036 CGAAACAGAGTTTCTCCCCCT 59.652 52.381 17.43 0.0 0.0 4.79 F
2242 4235 0.175073 GCACCCGGTTAGTAGTCCTG 59.825 60.000 0.00 0.0 0.0 3.86 F
2825 5350 0.832626 ACCTTGGCTTTGCTTTGCTT 59.167 45.000 0.00 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1130 2732 2.526873 ACCGGAGTGGGCTCTTGT 60.527 61.111 9.46 0.0 44.64 3.16 R
2070 4062 2.145397 TAACATTAATTGCCGCCCCA 57.855 45.000 0.00 0.0 0.00 4.96 R
2151 4144 3.497405 GGCTGATCCTCCTGAATTATGCA 60.497 47.826 0.00 0.0 0.00 3.96 R
3715 6579 1.009829 GTAGCTCCATTCCTGCAACG 58.990 55.000 0.00 0.0 0.00 4.10 R
4151 7570 0.039256 TTGTGCTTGCCATCTTTCGC 60.039 50.000 0.00 0.0 0.00 4.70 R
4684 8197 0.105964 GCCCCTGAAAACAAACACCC 59.894 55.000 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.104356 TGGTCTAGGGGGACAAACCA 60.104 55.000 0.00 0.00 41.20 3.67
78 79 2.186076 CACTAGCGACATCGAAGGAAC 58.814 52.381 5.26 0.00 43.02 3.62
79 80 2.093106 ACTAGCGACATCGAAGGAACT 58.907 47.619 5.26 0.00 43.02 3.01
92 93 1.807814 AGGAACTGACAACCTGACCT 58.192 50.000 0.00 0.00 37.18 3.85
139 140 0.671781 GCACACAAGATGAGACCGCT 60.672 55.000 0.00 0.00 0.00 5.52
162 163 3.584834 GCAACAAGGCGATAACCAAATT 58.415 40.909 0.00 0.00 0.00 1.82
163 164 3.612423 GCAACAAGGCGATAACCAAATTC 59.388 43.478 0.00 0.00 0.00 2.17
178 179 3.506810 CAAATTCACACCACACAACGTT 58.493 40.909 0.00 0.00 0.00 3.99
194 195 1.078709 CGTTGGAGCACATGTTCGAT 58.921 50.000 0.00 0.00 0.00 3.59
202 203 2.159476 AGCACATGTTCGATGACAATGC 60.159 45.455 16.40 16.40 41.95 3.56
224 225 2.121963 TCACTGGCTCCCCAAGGT 60.122 61.111 0.00 0.00 41.58 3.50
226 227 3.322466 ACTGGCTCCCCAAGGTCG 61.322 66.667 0.00 0.00 41.58 4.79
228 229 3.612247 CTGGCTCCCCAAGGTCGTG 62.612 68.421 0.00 0.00 41.58 4.35
253 1854 2.896278 ATCACCGAGATGGGTTCGA 58.104 52.632 0.00 0.00 44.64 3.71
255 1856 0.896479 TCACCGAGATGGGTTCGACA 60.896 55.000 0.00 0.00 44.64 4.35
259 1860 0.736325 CGAGATGGGTTCGACACACC 60.736 60.000 0.00 0.00 40.36 4.16
261 1862 0.984230 AGATGGGTTCGACACACCAT 59.016 50.000 7.07 7.88 45.87 3.55
265 1866 1.001520 TGGGTTCGACACACCATACAG 59.998 52.381 7.07 0.00 35.80 2.74
268 1869 0.389296 TTCGACACACCATACAGCGG 60.389 55.000 0.00 0.00 0.00 5.52
271 1872 0.953471 GACACACCATACAGCGGCAA 60.953 55.000 1.45 0.00 0.00 4.52
299 1900 7.987750 AAAACCAAAACCTAACACACAAAAT 57.012 28.000 0.00 0.00 0.00 1.82
301 1902 6.287589 ACCAAAACCTAACACACAAAATGA 57.712 33.333 0.00 0.00 0.00 2.57
636 2237 6.837471 AGGTATGTATTTTTAACCCGCAAA 57.163 33.333 0.00 0.00 0.00 3.68
637 2238 7.229581 AGGTATGTATTTTTAACCCGCAAAA 57.770 32.000 0.00 0.00 0.00 2.44
638 2239 7.668492 AGGTATGTATTTTTAACCCGCAAAAA 58.332 30.769 0.00 0.00 38.74 1.94
785 2386 1.815840 TGGAAACACGACGCAAGCA 60.816 52.632 0.00 0.00 36.25 3.91
834 2435 4.803426 CGTGCAGGAGGAGGACGC 62.803 72.222 0.00 0.00 43.40 5.19
1320 2929 4.162690 CTTCCTTCCTCCGGCCGG 62.163 72.222 39.13 39.13 0.00 6.13
1350 2959 3.813166 CCGCAATCGACCCATTAGTTAAT 59.187 43.478 0.00 0.00 38.10 1.40
1529 3152 6.018262 CGGATGGTTAGCATCTTTCGATTTTA 60.018 38.462 21.37 0.00 0.00 1.52
1546 3171 8.428186 TCGATTTTACTCCGCTTAACATAAAT 57.572 30.769 0.00 0.00 0.00 1.40
1646 3274 5.946298 AGTGATGCAGTTTGATACACATTG 58.054 37.500 0.00 0.00 0.00 2.82
1647 3275 5.097529 GTGATGCAGTTTGATACACATTGG 58.902 41.667 0.00 0.00 0.00 3.16
1649 3277 2.230992 TGCAGTTTGATACACATTGGGC 59.769 45.455 0.00 0.00 0.00 5.36
1650 3278 2.493278 GCAGTTTGATACACATTGGGCT 59.507 45.455 0.00 0.00 0.00 5.19
1657 3285 4.352009 TGATACACATTGGGCTGGAATTT 58.648 39.130 0.00 0.00 0.00 1.82
1659 3287 3.683365 ACACATTGGGCTGGAATTTTC 57.317 42.857 0.00 0.00 0.00 2.29
1769 3556 1.348036 CGAAACAGAGTTTCTCCCCCT 59.652 52.381 17.43 0.00 0.00 4.79
2005 3826 7.592164 GCATTTTCTTGTGCAGCAATTTATTTT 59.408 29.630 0.00 0.00 40.94 1.82
2006 3827 9.453325 CATTTTCTTGTGCAGCAATTTATTTTT 57.547 25.926 0.00 0.00 36.36 1.94
2051 3872 4.687018 TGCATTTTCTTGTGCAGCAATTAG 59.313 37.500 0.00 0.00 45.60 1.73
2058 3879 9.973450 TTTTCTTGTGCAGCAATTAGTTAATTA 57.027 25.926 0.00 0.00 36.36 1.40
2089 4082 1.751924 GTGGGGCGGCAATTAATGTTA 59.248 47.619 12.47 0.00 0.00 2.41
2151 4144 7.981225 GCTGATGGACCATTTATGTTTGTTATT 59.019 33.333 8.78 0.00 0.00 1.40
2242 4235 0.175073 GCACCCGGTTAGTAGTCCTG 59.825 60.000 0.00 0.00 0.00 3.86
2243 4236 1.843368 CACCCGGTTAGTAGTCCTGA 58.157 55.000 0.00 0.00 0.00 3.86
2305 4367 3.630168 TCAGATTCAGAGCTGCTAGACT 58.370 45.455 0.15 0.00 39.14 3.24
2306 4368 3.380954 TCAGATTCAGAGCTGCTAGACTG 59.619 47.826 0.15 6.31 39.14 3.51
2307 4369 2.101249 AGATTCAGAGCTGCTAGACTGC 59.899 50.000 0.15 0.79 43.18 4.40
2313 4375 3.521995 GCTGCTAGACTGCTTGACA 57.478 52.632 0.00 0.00 39.94 3.58
2366 4428 7.935338 AAACTTTGCTTGACAGATATTTGTG 57.065 32.000 3.18 0.00 0.00 3.33
2382 4444 4.348863 TTTGTGGGCAAATGTTTATGCT 57.651 36.364 0.00 0.00 42.20 3.79
2389 4451 7.069208 TGTGGGCAAATGTTTATGCTGATATTA 59.931 33.333 0.00 0.00 42.20 0.98
2461 4526 3.823304 GAGAGTTTGGCAGATTTGAGGTT 59.177 43.478 0.00 0.00 0.00 3.50
2462 4527 4.985538 AGAGTTTGGCAGATTTGAGGTTA 58.014 39.130 0.00 0.00 0.00 2.85
2463 4528 5.385198 AGAGTTTGGCAGATTTGAGGTTAA 58.615 37.500 0.00 0.00 0.00 2.01
2464 4529 6.012745 AGAGTTTGGCAGATTTGAGGTTAAT 58.987 36.000 0.00 0.00 0.00 1.40
2557 4622 3.135530 CAGGAAAGGGGAGAGAATACTGG 59.864 52.174 0.00 0.00 0.00 4.00
2559 4624 4.015541 AGGAAAGGGGAGAGAATACTGGTA 60.016 45.833 0.00 0.00 0.00 3.25
2562 4627 3.917300 AGGGGAGAGAATACTGGTACTG 58.083 50.000 0.00 0.00 0.00 2.74
2568 4633 4.868268 AGAGAATACTGGTACTGGTAGCA 58.132 43.478 11.34 11.34 40.75 3.49
2569 4634 5.459505 AGAGAATACTGGTACTGGTAGCAT 58.540 41.667 12.10 6.61 41.91 3.79
2825 5350 0.832626 ACCTTGGCTTTGCTTTGCTT 59.167 45.000 0.00 0.00 0.00 3.91
2830 5355 1.302366 GGCTTTGCTTTGCTTTGCTT 58.698 45.000 0.00 0.00 0.00 3.91
2917 5577 6.967135 TGTCGTTATCATAGTCATAGACCAC 58.033 40.000 0.00 0.00 32.18 4.16
2976 5735 1.873591 GTGGAGTTGTGGTTGTAGCAG 59.126 52.381 0.00 0.00 0.00 4.24
3007 5789 8.445493 CAATTGCAATTTTAACCAAGATCCTTC 58.555 33.333 21.95 0.00 0.00 3.46
3029 5811 3.019564 ACATTTAACCTCAGCTGATGCC 58.980 45.455 18.63 0.00 40.80 4.40
3035 5817 2.529632 ACCTCAGCTGATGCCGATATA 58.470 47.619 18.63 0.00 40.80 0.86
3168 6000 8.506140 CGTAAGAATCTCTTTCTCTGATGATC 57.494 38.462 0.00 0.00 44.09 2.92
3192 6036 2.266554 CTTTGCATCCTCGAGTCTCAC 58.733 52.381 12.31 0.00 0.00 3.51
3213 6058 4.756642 CACCTGAAAACTGCACTGAATCTA 59.243 41.667 0.00 0.00 0.00 1.98
3220 6065 7.332926 TGAAAACTGCACTGAATCTATCTTCTC 59.667 37.037 0.00 0.00 0.00 2.87
3305 6150 0.962356 AGCGATTTGTTCAGCCCCAG 60.962 55.000 0.00 0.00 0.00 4.45
3321 6166 1.674057 CAGGGAGAGGCTTGACGTT 59.326 57.895 0.00 0.00 0.00 3.99
3454 6316 4.206088 CGACTGTTAACGGTTTTGTTAGC 58.794 43.478 20.79 5.21 35.85 3.09
3715 6579 6.206243 ACAGCCATCTTTATGCATAGTTCATC 59.794 38.462 6.50 0.00 0.00 2.92
3878 7290 3.687572 GCAGTAAGCGCACTACTACTA 57.312 47.619 18.44 0.00 0.00 1.82
3879 7291 3.361414 GCAGTAAGCGCACTACTACTAC 58.639 50.000 18.44 8.05 0.00 2.73
3964 7383 5.278266 CGGCTTTCTCCTTATTTTGTGAACA 60.278 40.000 0.00 0.00 0.00 3.18
4141 7560 1.145738 ACTGACCCAAGCTTGAATGGT 59.854 47.619 28.05 24.38 34.79 3.55
4151 7570 3.624777 AGCTTGAATGGTGATAACTGGG 58.375 45.455 0.00 0.00 0.00 4.45
4212 7631 7.613585 AGATATCATAGTCTGCTGGAGAAATG 58.386 38.462 5.32 13.33 31.63 2.32
4227 7646 1.541588 GAAATGAGCAGAACGGGCTTT 59.458 47.619 0.00 0.00 42.78 3.51
4228 7647 2.489938 AATGAGCAGAACGGGCTTTA 57.510 45.000 0.00 0.00 42.78 1.85
4336 7755 4.218417 GCATTCTCCAATTGTGGTTGTAGT 59.782 41.667 4.43 0.00 46.11 2.73
4459 7878 0.393537 GCCTGGGAGAGTGGTCATTG 60.394 60.000 0.00 0.00 0.00 2.82
4505 7925 2.736721 CTCGCCGTTTTTCTGATCTGAA 59.263 45.455 10.68 10.68 0.00 3.02
4642 8062 4.458989 ACACCACCATAAGCATAACAAGTG 59.541 41.667 0.00 0.00 0.00 3.16
4679 8192 4.566278 TCAGAATGTGAGCCACTAGCATTT 60.566 41.667 6.83 0.00 40.52 2.32
4680 8193 5.338300 TCAGAATGTGAGCCACTAGCATTTA 60.338 40.000 6.83 0.00 40.52 1.40
4681 8194 7.347117 TCAGAATGTGAGCCACTAGCATTTAC 61.347 42.308 6.83 0.00 40.52 2.01
4686 8199 1.583054 GCCACTAGCATTTACGAGGG 58.417 55.000 0.00 0.00 42.97 4.30
4687 8200 1.134491 GCCACTAGCATTTACGAGGGT 60.134 52.381 0.00 0.00 42.97 4.34
4688 8201 2.550978 CCACTAGCATTTACGAGGGTG 58.449 52.381 0.00 0.00 0.00 4.61
4689 8202 2.093658 CCACTAGCATTTACGAGGGTGT 60.094 50.000 0.00 0.00 0.00 4.16
4690 8203 3.596214 CACTAGCATTTACGAGGGTGTT 58.404 45.455 0.00 0.00 0.00 3.32
4691 8204 4.000988 CACTAGCATTTACGAGGGTGTTT 58.999 43.478 0.00 0.00 0.00 2.83
4692 8205 4.000988 ACTAGCATTTACGAGGGTGTTTG 58.999 43.478 0.00 0.00 0.00 2.93
4693 8206 2.858745 AGCATTTACGAGGGTGTTTGT 58.141 42.857 0.00 0.00 0.00 2.83
4694 8207 3.219281 AGCATTTACGAGGGTGTTTGTT 58.781 40.909 0.00 0.00 0.00 2.83
4695 8208 3.634910 AGCATTTACGAGGGTGTTTGTTT 59.365 39.130 0.00 0.00 0.00 2.83
4696 8209 4.098807 AGCATTTACGAGGGTGTTTGTTTT 59.901 37.500 0.00 0.00 0.00 2.43
4697 8210 4.443063 GCATTTACGAGGGTGTTTGTTTTC 59.557 41.667 0.00 0.00 0.00 2.29
4698 8211 5.583495 CATTTACGAGGGTGTTTGTTTTCA 58.417 37.500 0.00 0.00 0.00 2.69
4699 8212 4.886247 TTACGAGGGTGTTTGTTTTCAG 57.114 40.909 0.00 0.00 0.00 3.02
4700 8213 2.021457 ACGAGGGTGTTTGTTTTCAGG 58.979 47.619 0.00 0.00 0.00 3.86
4701 8214 1.336755 CGAGGGTGTTTGTTTTCAGGG 59.663 52.381 0.00 0.00 0.00 4.45
4702 8215 1.686587 GAGGGTGTTTGTTTTCAGGGG 59.313 52.381 0.00 0.00 0.00 4.79
4703 8216 0.105964 GGGTGTTTGTTTTCAGGGGC 59.894 55.000 0.00 0.00 0.00 5.80
4704 8217 1.119684 GGTGTTTGTTTTCAGGGGCT 58.880 50.000 0.00 0.00 0.00 5.19
4705 8218 1.484653 GGTGTTTGTTTTCAGGGGCTT 59.515 47.619 0.00 0.00 0.00 4.35
4706 8219 2.696187 GGTGTTTGTTTTCAGGGGCTTA 59.304 45.455 0.00 0.00 0.00 3.09
4707 8220 3.323691 GGTGTTTGTTTTCAGGGGCTTAT 59.676 43.478 0.00 0.00 0.00 1.73
4708 8221 4.202315 GGTGTTTGTTTTCAGGGGCTTATT 60.202 41.667 0.00 0.00 0.00 1.40
4709 8222 4.749598 GTGTTTGTTTTCAGGGGCTTATTG 59.250 41.667 0.00 0.00 0.00 1.90
4710 8223 4.202305 TGTTTGTTTTCAGGGGCTTATTGG 60.202 41.667 0.00 0.00 0.00 3.16
4711 8224 3.252554 TGTTTTCAGGGGCTTATTGGT 57.747 42.857 0.00 0.00 0.00 3.67
4712 8225 3.582164 TGTTTTCAGGGGCTTATTGGTT 58.418 40.909 0.00 0.00 0.00 3.67
4713 8226 3.970640 TGTTTTCAGGGGCTTATTGGTTT 59.029 39.130 0.00 0.00 0.00 3.27
4714 8227 5.148502 TGTTTTCAGGGGCTTATTGGTTTA 58.851 37.500 0.00 0.00 0.00 2.01
4715 8228 5.245075 TGTTTTCAGGGGCTTATTGGTTTAG 59.755 40.000 0.00 0.00 0.00 1.85
4716 8229 3.662759 TCAGGGGCTTATTGGTTTAGG 57.337 47.619 0.00 0.00 0.00 2.69
4717 8230 2.243736 TCAGGGGCTTATTGGTTTAGGG 59.756 50.000 0.00 0.00 0.00 3.53
4718 8231 2.243736 CAGGGGCTTATTGGTTTAGGGA 59.756 50.000 0.00 0.00 0.00 4.20
4719 8232 2.243994 AGGGGCTTATTGGTTTAGGGAC 59.756 50.000 0.00 0.00 0.00 4.46
4720 8233 2.243994 GGGGCTTATTGGTTTAGGGACT 59.756 50.000 0.00 0.00 46.37 3.85
4721 8234 3.309629 GGGGCTTATTGGTTTAGGGACTT 60.310 47.826 0.00 0.00 41.75 3.01
4722 8235 4.079615 GGGGCTTATTGGTTTAGGGACTTA 60.080 45.833 0.00 0.00 41.75 2.24
4723 8236 5.512298 GGGCTTATTGGTTTAGGGACTTAA 58.488 41.667 0.00 0.00 41.75 1.85
4724 8237 5.953548 GGGCTTATTGGTTTAGGGACTTAAA 59.046 40.000 0.00 0.00 41.75 1.52
4725 8238 6.438108 GGGCTTATTGGTTTAGGGACTTAAAA 59.562 38.462 0.00 0.00 41.75 1.52
4726 8239 7.038870 GGGCTTATTGGTTTAGGGACTTAAAAA 60.039 37.037 0.00 0.00 41.75 1.94
4744 8257 4.741928 AAAAAGTCCCTGTAAGTCCCAT 57.258 40.909 0.00 0.00 0.00 4.00
4745 8258 4.302559 AAAAGTCCCTGTAAGTCCCATC 57.697 45.455 0.00 0.00 0.00 3.51
4746 8259 2.950990 AGTCCCTGTAAGTCCCATCT 57.049 50.000 0.00 0.00 0.00 2.90
4747 8260 4.348020 AAGTCCCTGTAAGTCCCATCTA 57.652 45.455 0.00 0.00 0.00 1.98
4748 8261 4.348020 AGTCCCTGTAAGTCCCATCTAA 57.652 45.455 0.00 0.00 0.00 2.10
4749 8262 4.695606 AGTCCCTGTAAGTCCCATCTAAA 58.304 43.478 0.00 0.00 0.00 1.85
4750 8263 4.470304 AGTCCCTGTAAGTCCCATCTAAAC 59.530 45.833 0.00 0.00 0.00 2.01
4751 8264 3.778629 TCCCTGTAAGTCCCATCTAAACC 59.221 47.826 0.00 0.00 0.00 3.27
4752 8265 3.521937 CCCTGTAAGTCCCATCTAAACCA 59.478 47.826 0.00 0.00 0.00 3.67
4753 8266 4.018779 CCCTGTAAGTCCCATCTAAACCAA 60.019 45.833 0.00 0.00 0.00 3.67
4754 8267 5.515886 CCCTGTAAGTCCCATCTAAACCAAA 60.516 44.000 0.00 0.00 0.00 3.28
4755 8268 5.414765 CCTGTAAGTCCCATCTAAACCAAAC 59.585 44.000 0.00 0.00 0.00 2.93
4756 8269 5.942961 TGTAAGTCCCATCTAAACCAAACA 58.057 37.500 0.00 0.00 0.00 2.83
4757 8270 6.001460 TGTAAGTCCCATCTAAACCAAACAG 58.999 40.000 0.00 0.00 0.00 3.16
4758 8271 4.034285 AGTCCCATCTAAACCAAACAGG 57.966 45.455 0.00 0.00 45.67 4.00
4759 8272 3.655777 AGTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
4760 8273 4.010349 GTCCCATCTAAACCAAACAGGAG 58.990 47.826 0.00 0.00 41.22 3.69
4761 8274 3.010138 TCCCATCTAAACCAAACAGGAGG 59.990 47.826 0.00 0.00 41.22 4.30
4762 8275 3.356290 CCATCTAAACCAAACAGGAGGG 58.644 50.000 0.00 0.00 41.22 4.30
4763 8276 3.010138 CCATCTAAACCAAACAGGAGGGA 59.990 47.826 0.00 0.00 41.22 4.20
4764 8277 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
4766 8279 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
4767 8280 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
4768 8281 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
4769 8282 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
4770 8283 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
4771 8284 3.780850 ACCAAACAGGAGGGACTTATAGG 59.219 47.826 0.00 0.00 41.55 2.57
4772 8285 3.136626 CCAAACAGGAGGGACTTATAGGG 59.863 52.174 0.00 0.00 41.55 3.53
4773 8286 4.037927 CAAACAGGAGGGACTTATAGGGA 58.962 47.826 0.00 0.00 41.55 4.20
4774 8287 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
4775 8288 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
4776 8289 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
4777 8290 3.643792 CAGGAGGGACTTATAGGGACTTG 59.356 52.174 0.00 0.00 41.55 3.16
4778 8291 3.536434 AGGAGGGACTTATAGGGACTTGA 59.464 47.826 0.00 0.00 41.55 3.02
4779 8292 4.015541 AGGAGGGACTTATAGGGACTTGAA 60.016 45.833 0.00 0.00 41.55 2.69
4780 8293 4.345547 GGAGGGACTTATAGGGACTTGAAG 59.654 50.000 0.00 0.00 41.55 3.02
4781 8294 4.961585 AGGGACTTATAGGGACTTGAAGT 58.038 43.478 0.00 0.00 42.35 3.01
4782 8295 4.717280 AGGGACTTATAGGGACTTGAAGTG 59.283 45.833 0.90 0.00 40.62 3.16
4783 8296 4.141688 GGGACTTATAGGGACTTGAAGTGG 60.142 50.000 0.90 0.00 40.62 4.00
4784 8297 4.141688 GGACTTATAGGGACTTGAAGTGGG 60.142 50.000 0.90 0.00 40.62 4.61
4785 8298 3.200165 ACTTATAGGGACTTGAAGTGGGC 59.800 47.826 0.90 0.00 39.58 5.36
4786 8299 1.668826 ATAGGGACTTGAAGTGGGCA 58.331 50.000 0.90 0.00 41.75 5.36
4787 8300 1.668826 TAGGGACTTGAAGTGGGCAT 58.331 50.000 0.90 0.00 41.75 4.40
4788 8301 0.779997 AGGGACTTGAAGTGGGCATT 59.220 50.000 0.90 0.00 27.25 3.56
4789 8302 1.147817 AGGGACTTGAAGTGGGCATTT 59.852 47.619 0.90 0.00 27.25 2.32
4790 8303 1.273327 GGGACTTGAAGTGGGCATTTG 59.727 52.381 0.90 0.00 0.00 2.32
4791 8304 1.273327 GGACTTGAAGTGGGCATTTGG 59.727 52.381 0.90 0.00 0.00 3.28
4792 8305 1.273327 GACTTGAAGTGGGCATTTGGG 59.727 52.381 0.90 0.00 0.00 4.12
4793 8306 1.133199 ACTTGAAGTGGGCATTTGGGA 60.133 47.619 0.00 0.00 0.00 4.37
4794 8307 1.273327 CTTGAAGTGGGCATTTGGGAC 59.727 52.381 0.00 0.00 0.00 4.46
4795 8308 0.482446 TGAAGTGGGCATTTGGGACT 59.518 50.000 0.00 0.00 0.00 3.85
4796 8309 1.133199 TGAAGTGGGCATTTGGGACTT 60.133 47.619 0.00 0.00 0.00 3.01
4797 8310 2.109128 TGAAGTGGGCATTTGGGACTTA 59.891 45.455 0.00 0.00 0.00 2.24
4798 8311 3.245586 TGAAGTGGGCATTTGGGACTTAT 60.246 43.478 0.00 0.00 0.00 1.73
4799 8312 2.738743 AGTGGGCATTTGGGACTTATG 58.261 47.619 0.00 0.00 0.00 1.90
4800 8313 2.311542 AGTGGGCATTTGGGACTTATGA 59.688 45.455 0.00 0.00 0.00 2.15
4801 8314 3.096092 GTGGGCATTTGGGACTTATGAA 58.904 45.455 0.00 0.00 0.00 2.57
4802 8315 3.513515 GTGGGCATTTGGGACTTATGAAA 59.486 43.478 0.00 0.00 0.00 2.69
4803 8316 4.162131 GTGGGCATTTGGGACTTATGAAAT 59.838 41.667 0.00 0.00 0.00 2.17
4804 8317 5.362430 GTGGGCATTTGGGACTTATGAAATA 59.638 40.000 0.00 0.00 0.00 1.40
4805 8318 5.960811 TGGGCATTTGGGACTTATGAAATAA 59.039 36.000 0.00 0.00 36.20 1.40
4820 8333 5.683876 TGAAATAAGACTCTCAAGGAGGG 57.316 43.478 0.00 0.00 45.83 4.30
4821 8334 5.342017 TGAAATAAGACTCTCAAGGAGGGA 58.658 41.667 0.00 0.00 45.83 4.20
4822 8335 5.187967 TGAAATAAGACTCTCAAGGAGGGAC 59.812 44.000 0.00 0.00 45.83 4.46
4823 8336 4.618378 ATAAGACTCTCAAGGAGGGACT 57.382 45.455 0.00 0.00 45.83 3.85
4824 8337 3.268034 AAGACTCTCAAGGAGGGACTT 57.732 47.619 5.25 5.25 45.83 3.01
4825 8338 4.405756 AAGACTCTCAAGGAGGGACTTA 57.594 45.455 8.68 0.00 41.64 2.24
4826 8339 4.618378 AGACTCTCAAGGAGGGACTTAT 57.382 45.455 0.00 0.00 45.83 1.73
4827 8340 5.735733 AGACTCTCAAGGAGGGACTTATA 57.264 43.478 0.00 0.00 45.83 0.98
4828 8341 5.701224 AGACTCTCAAGGAGGGACTTATAG 58.299 45.833 0.00 0.00 45.83 1.31
4829 8342 4.810345 ACTCTCAAGGAGGGACTTATAGG 58.190 47.826 0.00 0.00 45.83 2.57
4830 8343 4.156477 CTCTCAAGGAGGGACTTATAGGG 58.844 52.174 0.00 0.00 41.55 3.53
4831 8344 3.797845 TCTCAAGGAGGGACTTATAGGGA 59.202 47.826 0.00 0.00 41.55 4.20
4832 8345 3.898741 CTCAAGGAGGGACTTATAGGGAC 59.101 52.174 0.00 0.00 41.55 4.46
4833 8346 3.536434 TCAAGGAGGGACTTATAGGGACT 59.464 47.826 0.00 0.00 41.55 3.85
4834 8347 4.015541 TCAAGGAGGGACTTATAGGGACTT 60.016 45.833 0.00 0.00 41.55 3.01
4835 8348 5.197189 TCAAGGAGGGACTTATAGGGACTTA 59.803 44.000 0.00 0.00 41.55 2.24
4836 8349 5.970692 AGGAGGGACTTATAGGGACTTAT 57.029 43.478 0.00 0.00 41.55 1.73
4837 8350 7.075915 TCAAGGAGGGACTTATAGGGACTTATA 59.924 40.741 0.00 0.00 41.55 0.98
4838 8351 7.046891 AGGAGGGACTTATAGGGACTTATAG 57.953 44.000 0.00 0.00 41.55 1.31
4839 8352 6.571180 AGGAGGGACTTATAGGGACTTATAGT 59.429 42.308 0.00 0.00 41.55 2.12
4840 8353 7.076566 AGGAGGGACTTATAGGGACTTATAGTT 59.923 40.741 0.00 0.00 41.55 2.24
4841 8354 7.178805 GGAGGGACTTATAGGGACTTATAGTTG 59.821 44.444 0.00 0.00 41.55 3.16
4842 8355 7.602868 AGGGACTTATAGGGACTTATAGTTGT 58.397 38.462 0.00 0.00 34.75 3.32
4843 8356 8.740512 AGGGACTTATAGGGACTTATAGTTGTA 58.259 37.037 0.00 0.00 34.75 2.41
4844 8357 9.372189 GGGACTTATAGGGACTTATAGTTGTAA 57.628 37.037 0.00 0.00 41.75 2.41
4853 8366 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
4863 8376 9.448587 AGTTGTAATATGGTCTTATAGGGACTT 57.551 33.333 7.52 0.00 41.75 3.01
4884 8397 7.563724 ACTTATAAGTCCTAGGAACCAAACA 57.436 36.000 14.65 0.00 32.86 2.83
4885 8398 7.621796 ACTTATAAGTCCTAGGAACCAAACAG 58.378 38.462 14.65 7.21 32.86 3.16
4886 8399 3.790089 AAGTCCTAGGAACCAAACAGG 57.210 47.619 14.65 0.00 45.67 4.00
4900 8413 5.959618 CCAAACAGGTAGGGACTTTTTAG 57.040 43.478 0.00 0.00 41.75 1.85
4901 8414 5.382616 CCAAACAGGTAGGGACTTTTTAGT 58.617 41.667 0.00 0.00 41.75 2.24
4902 8415 5.240844 CCAAACAGGTAGGGACTTTTTAGTG 59.759 44.000 0.00 0.00 41.75 2.74
4903 8416 5.899631 AACAGGTAGGGACTTTTTAGTGA 57.100 39.130 0.00 0.00 41.75 3.41
4904 8417 5.224821 ACAGGTAGGGACTTTTTAGTGAC 57.775 43.478 0.00 0.00 41.75 3.67
4905 8418 4.906060 ACAGGTAGGGACTTTTTAGTGACT 59.094 41.667 0.00 0.00 41.75 3.41
4906 8419 5.368816 ACAGGTAGGGACTTTTTAGTGACTT 59.631 40.000 0.00 0.00 41.75 3.01
4907 8420 5.701290 CAGGTAGGGACTTTTTAGTGACTTG 59.299 44.000 0.00 0.00 41.75 3.16
4908 8421 5.001874 GGTAGGGACTTTTTAGTGACTTGG 58.998 45.833 0.00 0.00 41.75 3.61
4909 8422 4.100279 AGGGACTTTTTAGTGACTTGGG 57.900 45.455 0.00 0.00 27.25 4.12
4910 8423 3.720002 AGGGACTTTTTAGTGACTTGGGA 59.280 43.478 0.00 0.00 27.25 4.37
4911 8424 3.819337 GGGACTTTTTAGTGACTTGGGAC 59.181 47.826 0.00 0.00 0.00 4.46
4912 8425 4.445879 GGGACTTTTTAGTGACTTGGGACT 60.446 45.833 0.00 0.00 0.00 3.85
4913 8426 5.131067 GGACTTTTTAGTGACTTGGGACTT 58.869 41.667 0.00 0.00 0.00 3.01
4914 8427 6.293698 GGACTTTTTAGTGACTTGGGACTTA 58.706 40.000 0.00 0.00 0.00 2.24
4915 8428 6.940867 GGACTTTTTAGTGACTTGGGACTTAT 59.059 38.462 0.00 0.00 0.00 1.73
4916 8429 8.098912 GGACTTTTTAGTGACTTGGGACTTATA 58.901 37.037 0.00 0.00 0.00 0.98
4917 8430 9.498176 GACTTTTTAGTGACTTGGGACTTATAA 57.502 33.333 0.00 0.00 0.00 0.98
4918 8431 9.503399 ACTTTTTAGTGACTTGGGACTTATAAG 57.497 33.333 11.05 11.05 0.00 1.73
4919 8432 9.503399 CTTTTTAGTGACTTGGGACTTATAAGT 57.497 33.333 18.05 18.05 43.16 2.24
4920 8433 9.856162 TTTTTAGTGACTTGGGACTTATAAGTT 57.144 29.630 18.96 2.29 39.88 2.66
4921 8434 8.842358 TTTAGTGACTTGGGACTTATAAGTTG 57.158 34.615 18.96 9.81 39.88 3.16
4922 8435 5.805728 AGTGACTTGGGACTTATAAGTTGG 58.194 41.667 18.96 10.07 39.88 3.77
4923 8436 4.941873 GTGACTTGGGACTTATAAGTTGGG 59.058 45.833 18.96 10.37 39.88 4.12
4924 8437 4.847512 TGACTTGGGACTTATAAGTTGGGA 59.152 41.667 18.96 6.15 39.88 4.37
4925 8438 5.175388 ACTTGGGACTTATAAGTTGGGAC 57.825 43.478 18.96 6.19 39.88 4.46
4926 8439 4.850386 ACTTGGGACTTATAAGTTGGGACT 59.150 41.667 18.96 0.00 39.88 3.85
4927 8440 6.027482 ACTTGGGACTTATAAGTTGGGACTA 58.973 40.000 18.96 3.96 39.88 2.59
4928 8441 6.502863 ACTTGGGACTTATAAGTTGGGACTAA 59.497 38.462 18.96 10.32 39.88 2.24
4929 8442 6.956102 TGGGACTTATAAGTTGGGACTAAA 57.044 37.500 18.96 0.00 39.88 1.85
4930 8443 7.332433 TGGGACTTATAAGTTGGGACTAAAA 57.668 36.000 18.96 0.00 39.88 1.52
4931 8444 7.757611 TGGGACTTATAAGTTGGGACTAAAAA 58.242 34.615 18.96 0.00 39.88 1.94
4958 8471 7.845066 GTCCTAGGACTTATAAACCAAACAG 57.155 40.000 31.12 0.00 41.57 3.16
4959 8472 6.822170 GTCCTAGGACTTATAAACCAAACAGG 59.178 42.308 31.12 9.66 41.57 4.00
4960 8473 6.069847 TCCTAGGACTTATAAACCAAACAGGG 60.070 42.308 7.62 0.00 43.89 4.45
4961 8474 4.341487 AGGACTTATAAACCAAACAGGGC 58.659 43.478 9.91 0.00 43.89 5.19
4962 8475 3.446161 GGACTTATAAACCAAACAGGGCC 59.554 47.826 0.00 0.00 43.89 5.80
4977 8490 7.425606 CAAACAGGGCCTACATATTTCAATAC 58.574 38.462 5.28 0.00 0.00 1.89
5073 8586 5.583854 CCTCTGCATCACCATATATAACAGC 59.416 44.000 0.00 0.00 0.00 4.40
5075 8588 3.684305 TGCATCACCATATATAACAGCGC 59.316 43.478 0.00 0.00 0.00 5.92
5104 8617 4.160439 TGGCAAATCCACAAGTGTTACAAA 59.840 37.500 0.00 0.00 40.72 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.273041 GCCTATTTGGTTTGTCCCCCT 60.273 52.381 0.00 0.00 38.35 4.79
7 8 1.191535 GCCTATTTGGTTTGTCCCCC 58.808 55.000 0.00 0.00 38.35 5.40
11 12 0.815095 CCCCGCCTATTTGGTTTGTC 59.185 55.000 0.00 0.00 38.35 3.18
16 17 1.065997 ATAGCCCCCGCCTATTTGGT 61.066 55.000 0.00 0.00 38.35 3.67
17 18 0.609131 CATAGCCCCCGCCTATTTGG 60.609 60.000 0.00 0.00 39.35 3.28
19 20 0.400594 GACATAGCCCCCGCCTATTT 59.599 55.000 0.00 0.00 34.57 1.40
78 79 1.475751 AACTGCAGGTCAGGTTGTCAG 60.476 52.381 19.93 0.00 40.58 3.51
79 80 0.546122 AACTGCAGGTCAGGTTGTCA 59.454 50.000 19.93 0.00 40.58 3.58
92 93 1.302431 CCGTCCATGGACAACTGCA 60.302 57.895 37.42 3.39 44.77 4.41
117 118 1.606480 CGGTCTCATCTTGTGTGCAGT 60.606 52.381 0.00 0.00 0.00 4.40
118 119 1.073964 CGGTCTCATCTTGTGTGCAG 58.926 55.000 0.00 0.00 0.00 4.41
139 140 0.250945 TGGTTATCGCCTTGTTGCCA 60.251 50.000 0.00 0.00 0.00 4.92
149 150 3.057876 TGTGGTGTGAATTTGGTTATCGC 60.058 43.478 0.00 0.00 0.00 4.58
151 152 5.446143 TGTGTGGTGTGAATTTGGTTATC 57.554 39.130 0.00 0.00 0.00 1.75
153 154 4.438880 CGTTGTGTGGTGTGAATTTGGTTA 60.439 41.667 0.00 0.00 0.00 2.85
162 163 0.036294 TCCAACGTTGTGTGGTGTGA 60.036 50.000 25.63 11.02 0.00 3.58
163 164 0.376852 CTCCAACGTTGTGTGGTGTG 59.623 55.000 25.63 8.85 0.00 3.82
178 179 1.001860 TGTCATCGAACATGTGCTCCA 59.998 47.619 0.00 0.00 0.00 3.86
194 195 0.320683 CCAGTGAGTCGGCATTGTCA 60.321 55.000 0.00 0.00 0.00 3.58
202 203 3.775654 GGGGAGCCAGTGAGTCGG 61.776 72.222 0.00 0.00 0.00 4.79
224 225 1.873270 CTCGGTGATGTGGTCCACGA 61.873 60.000 17.27 8.51 37.14 4.35
226 227 0.537188 ATCTCGGTGATGTGGTCCAC 59.463 55.000 15.64 15.64 33.43 4.02
228 229 3.369381 CATCTCGGTGATGTGGTCC 57.631 57.895 11.00 0.00 45.55 4.46
235 236 0.460311 GTCGAACCCATCTCGGTGAT 59.540 55.000 0.00 0.00 35.83 3.06
239 240 0.736325 GTGTGTCGAACCCATCTCGG 60.736 60.000 0.00 0.00 36.93 4.63
253 1854 1.072332 TTGCCGCTGTATGGTGTGT 59.928 52.632 0.00 0.00 0.00 3.72
255 1856 2.032634 CGTTGCCGCTGTATGGTGT 61.033 57.895 0.00 0.00 0.00 4.16
259 1860 1.976045 GTTTTTCGTTGCCGCTGTATG 59.024 47.619 0.00 0.00 0.00 2.39
261 1862 0.308376 GGTTTTTCGTTGCCGCTGTA 59.692 50.000 0.00 0.00 0.00 2.74
265 1866 1.000145 TTTTGGTTTTTCGTTGCCGC 59.000 45.000 0.00 0.00 0.00 6.53
268 1869 4.626172 TGTTAGGTTTTGGTTTTTCGTTGC 59.374 37.500 0.00 0.00 0.00 4.17
271 1872 5.162794 GTGTGTTAGGTTTTGGTTTTTCGT 58.837 37.500 0.00 0.00 0.00 3.85
278 1879 6.287589 TCATTTTGTGTGTTAGGTTTTGGT 57.712 33.333 0.00 0.00 0.00 3.67
279 1880 5.752955 CCTCATTTTGTGTGTTAGGTTTTGG 59.247 40.000 0.00 0.00 0.00 3.28
280 1881 6.337356 ACCTCATTTTGTGTGTTAGGTTTTG 58.663 36.000 0.00 0.00 29.54 2.44
613 2214 6.837471 TTTGCGGGTTAAAAATACATACCT 57.163 33.333 0.00 0.00 0.00 3.08
614 2215 7.886405 TTTTTGCGGGTTAAAAATACATACC 57.114 32.000 0.00 0.00 33.47 2.73
637 2238 9.939802 AATGAGAAGAATACGTACCTAGTTTTT 57.060 29.630 0.00 0.00 0.00 1.94
638 2239 9.939802 AAATGAGAAGAATACGTACCTAGTTTT 57.060 29.630 0.00 0.00 0.00 2.43
730 2331 5.054390 ACAAAATGGCGATCAAATTACGT 57.946 34.783 0.00 0.00 0.00 3.57
785 2386 3.053917 AGTTTCCCTTTACGTGCCCATAT 60.054 43.478 0.00 0.00 0.00 1.78
852 2453 3.475566 ACGTTCTACATGATGGATGGG 57.524 47.619 0.00 0.00 36.23 4.00
1130 2732 2.526873 ACCGGAGTGGGCTCTTGT 60.527 61.111 9.46 0.00 44.64 3.16
1338 2947 4.386049 GCGACGATCTGATTAACTAATGGG 59.614 45.833 0.00 0.00 0.00 4.00
1403 3012 5.121611 CGTGACCACTGCATTACAAGAATAA 59.878 40.000 0.00 0.00 0.00 1.40
1529 3152 7.769044 ACTGTCAATATTTATGTTAAGCGGAGT 59.231 33.333 0.00 0.00 0.00 3.85
1546 3171 6.056090 TGGGTGCATACTAAACTGTCAATA 57.944 37.500 0.00 0.00 0.00 1.90
1548 3173 4.359434 TGGGTGCATACTAAACTGTCAA 57.641 40.909 0.00 0.00 0.00 3.18
1549 3174 4.568072 ATGGGTGCATACTAAACTGTCA 57.432 40.909 0.00 0.00 0.00 3.58
1621 3246 6.579666 ATGTGTATCAAACTGCATCACTTT 57.420 33.333 0.00 0.00 0.00 2.66
1646 3274 6.357367 TGATACTAGAAGAAAATTCCAGCCC 58.643 40.000 0.00 0.00 0.00 5.19
1647 3275 7.716998 TCATGATACTAGAAGAAAATTCCAGCC 59.283 37.037 0.00 0.00 0.00 4.85
1649 3277 9.829507 ACTCATGATACTAGAAGAAAATTCCAG 57.170 33.333 0.00 0.00 0.00 3.86
2070 4062 2.145397 TAACATTAATTGCCGCCCCA 57.855 45.000 0.00 0.00 0.00 4.96
2076 4068 8.597662 AGATCAATGCATTAACATTAATTGCC 57.402 30.769 12.53 0.00 38.19 4.52
2089 4082 5.593095 ACAGCAATCACTAGATCAATGCATT 59.407 36.000 5.99 5.99 37.76 3.56
2151 4144 3.497405 GGCTGATCCTCCTGAATTATGCA 60.497 47.826 0.00 0.00 0.00 3.96
2242 4235 4.624452 GGTAGTGTTTTGTACGATGAGGTC 59.376 45.833 0.00 0.00 0.00 3.85
2243 4236 4.562143 GGGTAGTGTTTTGTACGATGAGGT 60.562 45.833 0.00 0.00 0.00 3.85
2325 4387 6.620949 GCAAAGTTTTTGCCTCCGTTTAAAAA 60.621 34.615 13.97 0.00 39.38 1.94
2326 4388 5.163844 GCAAAGTTTTTGCCTCCGTTTAAAA 60.164 36.000 13.97 0.00 39.38 1.52
2327 4389 4.330347 GCAAAGTTTTTGCCTCCGTTTAAA 59.670 37.500 13.97 0.00 39.38 1.52
2328 4390 3.866327 GCAAAGTTTTTGCCTCCGTTTAA 59.134 39.130 13.97 0.00 39.38 1.52
2329 4391 3.131400 AGCAAAGTTTTTGCCTCCGTTTA 59.869 39.130 19.55 0.00 45.98 2.01
2330 4392 2.093711 AGCAAAGTTTTTGCCTCCGTTT 60.094 40.909 19.55 0.70 45.98 3.60
2331 4393 1.480545 AGCAAAGTTTTTGCCTCCGTT 59.519 42.857 19.55 1.33 45.98 4.44
2332 4394 1.111277 AGCAAAGTTTTTGCCTCCGT 58.889 45.000 19.55 1.96 45.98 4.69
2333 4395 1.860326 CAAGCAAAGTTTTTGCCTCCG 59.140 47.619 19.55 5.61 45.98 4.63
2334 4396 2.866156 GTCAAGCAAAGTTTTTGCCTCC 59.134 45.455 19.55 5.47 45.98 4.30
2335 4397 3.520569 TGTCAAGCAAAGTTTTTGCCTC 58.479 40.909 19.55 10.31 45.98 4.70
2336 4398 3.195396 TCTGTCAAGCAAAGTTTTTGCCT 59.805 39.130 19.55 7.27 45.98 4.75
2337 4399 3.520569 TCTGTCAAGCAAAGTTTTTGCC 58.479 40.909 19.55 7.87 45.98 4.52
2338 4400 7.412137 AATATCTGTCAAGCAAAGTTTTTGC 57.588 32.000 16.48 16.48 45.22 3.68
2339 4401 8.819974 ACAAATATCTGTCAAGCAAAGTTTTTG 58.180 29.630 0.00 0.00 0.00 2.44
2340 4402 8.819974 CACAAATATCTGTCAAGCAAAGTTTTT 58.180 29.630 0.00 0.00 0.00 1.94
2341 4403 7.439056 CCACAAATATCTGTCAAGCAAAGTTTT 59.561 33.333 0.00 0.00 0.00 2.43
2342 4404 6.925165 CCACAAATATCTGTCAAGCAAAGTTT 59.075 34.615 0.00 0.00 0.00 2.66
2343 4405 6.449698 CCACAAATATCTGTCAAGCAAAGTT 58.550 36.000 0.00 0.00 0.00 2.66
2344 4406 5.047802 CCCACAAATATCTGTCAAGCAAAGT 60.048 40.000 0.00 0.00 0.00 2.66
2345 4407 5.404946 CCCACAAATATCTGTCAAGCAAAG 58.595 41.667 0.00 0.00 0.00 2.77
2346 4408 4.321899 GCCCACAAATATCTGTCAAGCAAA 60.322 41.667 0.00 0.00 0.00 3.68
2347 4409 3.193267 GCCCACAAATATCTGTCAAGCAA 59.807 43.478 0.00 0.00 0.00 3.91
2348 4410 2.754552 GCCCACAAATATCTGTCAAGCA 59.245 45.455 0.00 0.00 0.00 3.91
2366 4428 8.885494 TTTAATATCAGCATAAACATTTGCCC 57.115 30.769 0.00 0.00 39.72 5.36
2417 4479 7.664758 TCTCTCACAAACCTTTTACTACCTAC 58.335 38.462 0.00 0.00 0.00 3.18
2461 4526 6.071984 TGCTTGTCCTTTTTCACCCTTATTA 58.928 36.000 0.00 0.00 0.00 0.98
2462 4527 4.898861 TGCTTGTCCTTTTTCACCCTTATT 59.101 37.500 0.00 0.00 0.00 1.40
2463 4528 4.479158 TGCTTGTCCTTTTTCACCCTTAT 58.521 39.130 0.00 0.00 0.00 1.73
2464 4529 3.904717 TGCTTGTCCTTTTTCACCCTTA 58.095 40.909 0.00 0.00 0.00 2.69
2557 4622 7.923344 CAGCCTAATCATATATGCTACCAGTAC 59.077 40.741 7.92 0.00 0.00 2.73
2559 4624 6.631314 GCAGCCTAATCATATATGCTACCAGT 60.631 42.308 7.92 0.00 0.00 4.00
2562 4627 5.059833 GGCAGCCTAATCATATATGCTACC 58.940 45.833 3.29 1.33 32.89 3.18
2568 4633 9.014297 GTTTAGTTTGGCAGCCTAATCATATAT 57.986 33.333 14.15 0.00 0.00 0.86
2569 4634 8.217799 AGTTTAGTTTGGCAGCCTAATCATATA 58.782 33.333 14.15 0.00 0.00 0.86
2825 5350 2.092103 AGTTTGGTGGGTGACTAAGCAA 60.092 45.455 0.00 0.00 34.28 3.91
2830 5355 2.901839 GGTCTAGTTTGGTGGGTGACTA 59.098 50.000 0.00 0.00 0.00 2.59
2976 5735 3.501445 TGGTTAAAATTGCAATTGGCTGC 59.499 39.130 24.74 13.65 45.15 5.25
3007 5789 3.181493 GGCATCAGCTGAGGTTAAATGTG 60.181 47.826 27.46 15.63 41.70 3.21
3029 5811 8.219769 GTGATCTGCTCAATTCAGTTTATATCG 58.780 37.037 0.00 0.00 35.07 2.92
3035 5817 3.438087 CGGTGATCTGCTCAATTCAGTTT 59.562 43.478 0.00 0.00 35.07 2.66
3168 6000 1.016130 ACTCGAGGATGCAAAGCACG 61.016 55.000 18.41 0.00 43.04 5.34
3192 6036 5.879223 AGATAGATTCAGTGCAGTTTTCAGG 59.121 40.000 0.00 0.00 0.00 3.86
3213 6058 3.350833 GTGTTGAGCCATTGGAGAAGAT 58.649 45.455 6.95 0.00 0.00 2.40
3220 6065 1.180456 TGCAGGTGTTGAGCCATTGG 61.180 55.000 0.00 0.00 0.00 3.16
3305 6150 1.536284 CGATAACGTCAAGCCTCTCCC 60.536 57.143 0.00 0.00 34.56 4.30
3321 6166 1.204704 CAGCAAGTGGTGGAGACGATA 59.795 52.381 2.51 0.00 39.67 2.92
3681 6544 7.784037 TGCATAAAGATGGCTGTTTTTCATAT 58.216 30.769 0.00 0.00 33.26 1.78
3682 6545 7.167924 TGCATAAAGATGGCTGTTTTTCATA 57.832 32.000 0.00 0.00 33.26 2.15
3683 6546 6.040209 TGCATAAAGATGGCTGTTTTTCAT 57.960 33.333 0.00 0.00 33.26 2.57
3684 6547 5.465532 TGCATAAAGATGGCTGTTTTTCA 57.534 34.783 0.00 0.00 33.26 2.69
3693 6556 5.180117 ACGATGAACTATGCATAAAGATGGC 59.820 40.000 8.00 0.00 33.26 4.40
3703 6567 2.009051 CCTGCAACGATGAACTATGCA 58.991 47.619 0.00 0.00 44.07 3.96
3715 6579 1.009829 GTAGCTCCATTCCTGCAACG 58.990 55.000 0.00 0.00 0.00 4.10
3878 7290 8.316946 AGTGCATATATATGTTCAGCATAGTGT 58.683 33.333 21.10 0.00 42.68 3.55
3879 7291 8.713737 AGTGCATATATATGTTCAGCATAGTG 57.286 34.615 21.10 0.00 42.68 2.74
4141 7560 2.917933 CCATCTTTCGCCCAGTTATCA 58.082 47.619 0.00 0.00 0.00 2.15
4151 7570 0.039256 TTGTGCTTGCCATCTTTCGC 60.039 50.000 0.00 0.00 0.00 4.70
4212 7631 0.378610 GCATAAAGCCCGTTCTGCTC 59.621 55.000 0.00 0.00 38.34 4.26
4268 7687 6.845758 ATCTCATCAACCAATCAACACATT 57.154 33.333 0.00 0.00 0.00 2.71
4425 7844 1.037030 CAGGCCCGGCACATACAAAT 61.037 55.000 12.58 0.00 0.00 2.32
4454 7873 5.988310 AATCTGGCTCACAAAATCAATGA 57.012 34.783 0.00 0.00 0.00 2.57
4459 7878 5.098211 GCACTTAATCTGGCTCACAAAATC 58.902 41.667 0.00 0.00 0.00 2.17
4642 8062 0.469144 TTCTGAGTTTGGCCAACCCC 60.469 55.000 20.35 1.48 35.77 4.95
4679 8192 3.207778 CCTGAAAACAAACACCCTCGTA 58.792 45.455 0.00 0.00 0.00 3.43
4680 8193 2.021457 CCTGAAAACAAACACCCTCGT 58.979 47.619 0.00 0.00 0.00 4.18
4681 8194 1.336755 CCCTGAAAACAAACACCCTCG 59.663 52.381 0.00 0.00 0.00 4.63
4682 8195 1.686587 CCCCTGAAAACAAACACCCTC 59.313 52.381 0.00 0.00 0.00 4.30
4683 8196 1.788229 CCCCTGAAAACAAACACCCT 58.212 50.000 0.00 0.00 0.00 4.34
4684 8197 0.105964 GCCCCTGAAAACAAACACCC 59.894 55.000 0.00 0.00 0.00 4.61
4685 8198 1.119684 AGCCCCTGAAAACAAACACC 58.880 50.000 0.00 0.00 0.00 4.16
4686 8199 2.979814 AAGCCCCTGAAAACAAACAC 57.020 45.000 0.00 0.00 0.00 3.32
4687 8200 4.202305 CCAATAAGCCCCTGAAAACAAACA 60.202 41.667 0.00 0.00 0.00 2.83
4688 8201 4.202315 ACCAATAAGCCCCTGAAAACAAAC 60.202 41.667 0.00 0.00 0.00 2.93
4689 8202 3.970640 ACCAATAAGCCCCTGAAAACAAA 59.029 39.130 0.00 0.00 0.00 2.83
4690 8203 3.582164 ACCAATAAGCCCCTGAAAACAA 58.418 40.909 0.00 0.00 0.00 2.83
4691 8204 3.252554 ACCAATAAGCCCCTGAAAACA 57.747 42.857 0.00 0.00 0.00 2.83
4692 8205 4.617253 AAACCAATAAGCCCCTGAAAAC 57.383 40.909 0.00 0.00 0.00 2.43
4693 8206 4.775253 CCTAAACCAATAAGCCCCTGAAAA 59.225 41.667 0.00 0.00 0.00 2.29
4694 8207 4.349365 CCTAAACCAATAAGCCCCTGAAA 58.651 43.478 0.00 0.00 0.00 2.69
4695 8208 3.309556 CCCTAAACCAATAAGCCCCTGAA 60.310 47.826 0.00 0.00 0.00 3.02
4696 8209 2.243736 CCCTAAACCAATAAGCCCCTGA 59.756 50.000 0.00 0.00 0.00 3.86
4697 8210 2.243736 TCCCTAAACCAATAAGCCCCTG 59.756 50.000 0.00 0.00 0.00 4.45
4698 8211 2.243994 GTCCCTAAACCAATAAGCCCCT 59.756 50.000 0.00 0.00 0.00 4.79
4699 8212 2.243994 AGTCCCTAAACCAATAAGCCCC 59.756 50.000 0.00 0.00 0.00 5.80
4700 8213 3.664551 AGTCCCTAAACCAATAAGCCC 57.335 47.619 0.00 0.00 0.00 5.19
4701 8214 7.470935 TTTTAAGTCCCTAAACCAATAAGCC 57.529 36.000 0.00 0.00 0.00 4.35
4723 8236 4.354087 AGATGGGACTTACAGGGACTTTTT 59.646 41.667 0.00 0.00 34.60 1.94
4724 8237 3.916989 AGATGGGACTTACAGGGACTTTT 59.083 43.478 0.00 0.00 34.60 2.27
4725 8238 3.532102 AGATGGGACTTACAGGGACTTT 58.468 45.455 0.00 0.00 34.60 2.66
4726 8239 3.207044 AGATGGGACTTACAGGGACTT 57.793 47.619 0.00 0.00 34.60 3.01
4727 8240 2.950990 AGATGGGACTTACAGGGACT 57.049 50.000 0.00 0.00 43.88 3.85
4728 8241 4.383880 GGTTTAGATGGGACTTACAGGGAC 60.384 50.000 0.00 0.00 0.00 4.46
4729 8242 3.778629 GGTTTAGATGGGACTTACAGGGA 59.221 47.826 0.00 0.00 0.00 4.20
4730 8243 3.521937 TGGTTTAGATGGGACTTACAGGG 59.478 47.826 0.00 0.00 0.00 4.45
4731 8244 4.837093 TGGTTTAGATGGGACTTACAGG 57.163 45.455 0.00 0.00 0.00 4.00
4732 8245 6.001460 TGTTTGGTTTAGATGGGACTTACAG 58.999 40.000 0.00 0.00 0.00 2.74
4733 8246 5.942961 TGTTTGGTTTAGATGGGACTTACA 58.057 37.500 0.00 0.00 0.00 2.41
4734 8247 5.414765 CCTGTTTGGTTTAGATGGGACTTAC 59.585 44.000 0.00 0.00 0.00 2.34
4735 8248 5.311121 TCCTGTTTGGTTTAGATGGGACTTA 59.689 40.000 0.00 0.00 37.07 2.24
4736 8249 4.105697 TCCTGTTTGGTTTAGATGGGACTT 59.894 41.667 0.00 0.00 37.07 3.01
4737 8250 3.655777 TCCTGTTTGGTTTAGATGGGACT 59.344 43.478 0.00 0.00 37.07 3.85
4738 8251 4.010349 CTCCTGTTTGGTTTAGATGGGAC 58.990 47.826 0.00 0.00 37.07 4.46
4739 8252 3.010138 CCTCCTGTTTGGTTTAGATGGGA 59.990 47.826 0.00 0.00 37.07 4.37
4740 8253 3.356290 CCTCCTGTTTGGTTTAGATGGG 58.644 50.000 0.00 0.00 37.07 4.00
4741 8254 3.010138 TCCCTCCTGTTTGGTTTAGATGG 59.990 47.826 0.00 0.00 37.07 3.51
4742 8255 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
4743 8256 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
4744 8257 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
4745 8258 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
4746 8259 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
4747 8260 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
4748 8261 4.227527 CCTATAAGTCCCTCCTGTTTGGTT 59.772 45.833 0.00 0.00 37.07 3.67
4749 8262 3.780850 CCTATAAGTCCCTCCTGTTTGGT 59.219 47.826 0.00 0.00 37.07 3.67
4750 8263 3.136626 CCCTATAAGTCCCTCCTGTTTGG 59.863 52.174 0.00 0.00 37.10 3.28
4751 8264 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
4752 8265 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
4753 8266 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
4754 8267 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
4755 8268 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
4756 8269 3.536434 TCAAGTCCCTATAAGTCCCTCCT 59.464 47.826 0.00 0.00 0.00 3.69
4757 8270 3.924922 TCAAGTCCCTATAAGTCCCTCC 58.075 50.000 0.00 0.00 0.00 4.30
4758 8271 4.963628 ACTTCAAGTCCCTATAAGTCCCTC 59.036 45.833 0.00 0.00 0.00 4.30
4759 8272 4.717280 CACTTCAAGTCCCTATAAGTCCCT 59.283 45.833 0.00 0.00 0.00 4.20
4760 8273 4.141688 CCACTTCAAGTCCCTATAAGTCCC 60.142 50.000 0.00 0.00 0.00 4.46
4761 8274 4.141688 CCCACTTCAAGTCCCTATAAGTCC 60.142 50.000 0.00 0.00 0.00 3.85
4762 8275 4.683671 GCCCACTTCAAGTCCCTATAAGTC 60.684 50.000 0.00 0.00 0.00 3.01
4763 8276 3.200165 GCCCACTTCAAGTCCCTATAAGT 59.800 47.826 0.00 0.00 0.00 2.24
4764 8277 3.199946 TGCCCACTTCAAGTCCCTATAAG 59.800 47.826 0.00 0.00 0.00 1.73
4765 8278 3.186283 TGCCCACTTCAAGTCCCTATAA 58.814 45.455 0.00 0.00 0.00 0.98
4766 8279 2.840511 TGCCCACTTCAAGTCCCTATA 58.159 47.619 0.00 0.00 0.00 1.31
4767 8280 1.668826 TGCCCACTTCAAGTCCCTAT 58.331 50.000 0.00 0.00 0.00 2.57
4768 8281 1.668826 ATGCCCACTTCAAGTCCCTA 58.331 50.000 0.00 0.00 0.00 3.53
4769 8282 0.779997 AATGCCCACTTCAAGTCCCT 59.220 50.000 0.00 0.00 0.00 4.20
4770 8283 1.273327 CAAATGCCCACTTCAAGTCCC 59.727 52.381 0.00 0.00 0.00 4.46
4771 8284 1.273327 CCAAATGCCCACTTCAAGTCC 59.727 52.381 0.00 0.00 0.00 3.85
4772 8285 1.273327 CCCAAATGCCCACTTCAAGTC 59.727 52.381 0.00 0.00 0.00 3.01
4773 8286 1.133199 TCCCAAATGCCCACTTCAAGT 60.133 47.619 0.00 0.00 0.00 3.16
4774 8287 1.273327 GTCCCAAATGCCCACTTCAAG 59.727 52.381 0.00 0.00 0.00 3.02
4775 8288 1.133199 AGTCCCAAATGCCCACTTCAA 60.133 47.619 0.00 0.00 0.00 2.69
4776 8289 0.482446 AGTCCCAAATGCCCACTTCA 59.518 50.000 0.00 0.00 0.00 3.02
4777 8290 1.632589 AAGTCCCAAATGCCCACTTC 58.367 50.000 0.00 0.00 0.00 3.01
4778 8291 2.990740 TAAGTCCCAAATGCCCACTT 57.009 45.000 0.00 0.00 0.00 3.16
4779 8292 2.311542 TCATAAGTCCCAAATGCCCACT 59.688 45.455 0.00 0.00 0.00 4.00
4780 8293 2.733956 TCATAAGTCCCAAATGCCCAC 58.266 47.619 0.00 0.00 0.00 4.61
4781 8294 3.464720 TTCATAAGTCCCAAATGCCCA 57.535 42.857 0.00 0.00 0.00 5.36
4782 8295 6.323739 TCTTATTTCATAAGTCCCAAATGCCC 59.676 38.462 3.93 0.00 42.21 5.36
4783 8296 7.068716 AGTCTTATTTCATAAGTCCCAAATGCC 59.931 37.037 3.93 0.00 42.21 4.40
4784 8297 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
4785 8298 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
4786 8299 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
4787 8300 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
4788 8301 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
4789 8302 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
4790 8303 7.713073 CCTTGAGAGTCTTATTTCATAAGTCCC 59.287 40.741 0.00 0.00 42.21 4.46
4791 8304 8.478877 TCCTTGAGAGTCTTATTTCATAAGTCC 58.521 37.037 0.00 0.00 42.21 3.85
4792 8305 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
4793 8306 8.482128 CCTCCTTGAGAGTCTTATTTCATAAGT 58.518 37.037 0.00 0.00 41.47 2.24
4794 8307 7.930865 CCCTCCTTGAGAGTCTTATTTCATAAG 59.069 40.741 0.00 0.00 41.47 1.73
4795 8308 7.623677 TCCCTCCTTGAGAGTCTTATTTCATAA 59.376 37.037 0.00 0.00 41.47 1.90
4796 8309 7.070074 GTCCCTCCTTGAGAGTCTTATTTCATA 59.930 40.741 0.00 0.00 41.47 2.15
4797 8310 5.966935 TCCCTCCTTGAGAGTCTTATTTCAT 59.033 40.000 0.00 0.00 41.47 2.57
4798 8311 5.187967 GTCCCTCCTTGAGAGTCTTATTTCA 59.812 44.000 0.00 0.00 41.47 2.69
4799 8312 5.423931 AGTCCCTCCTTGAGAGTCTTATTTC 59.576 44.000 0.00 0.00 41.47 2.17
4800 8313 5.346270 AGTCCCTCCTTGAGAGTCTTATTT 58.654 41.667 0.00 0.00 41.47 1.40
4801 8314 4.954089 AGTCCCTCCTTGAGAGTCTTATT 58.046 43.478 0.00 0.00 41.47 1.40
4802 8315 4.618378 AGTCCCTCCTTGAGAGTCTTAT 57.382 45.455 0.00 0.00 41.47 1.73
4803 8316 4.405756 AAGTCCCTCCTTGAGAGTCTTA 57.594 45.455 0.00 0.00 41.47 2.10
4804 8317 3.268034 AAGTCCCTCCTTGAGAGTCTT 57.732 47.619 0.00 0.00 41.47 3.01
4805 8318 4.618378 ATAAGTCCCTCCTTGAGAGTCT 57.382 45.455 0.00 0.00 41.47 3.24
4806 8319 4.830600 CCTATAAGTCCCTCCTTGAGAGTC 59.169 50.000 0.00 0.00 41.47 3.36
4807 8320 4.388118 CCCTATAAGTCCCTCCTTGAGAGT 60.388 50.000 0.00 0.00 41.47 3.24
4808 8321 4.140900 TCCCTATAAGTCCCTCCTTGAGAG 60.141 50.000 0.00 0.00 42.83 3.20
4809 8322 3.797845 TCCCTATAAGTCCCTCCTTGAGA 59.202 47.826 0.00 0.00 0.00 3.27
4810 8323 3.898741 GTCCCTATAAGTCCCTCCTTGAG 59.101 52.174 0.00 0.00 0.00 3.02
4811 8324 3.536434 AGTCCCTATAAGTCCCTCCTTGA 59.464 47.826 0.00 0.00 0.00 3.02
4812 8325 3.930035 AGTCCCTATAAGTCCCTCCTTG 58.070 50.000 0.00 0.00 0.00 3.61
4813 8326 4.645968 AAGTCCCTATAAGTCCCTCCTT 57.354 45.455 0.00 0.00 0.00 3.36
4814 8327 5.970692 ATAAGTCCCTATAAGTCCCTCCT 57.029 43.478 0.00 0.00 0.00 3.69
4815 8328 6.803017 ACTATAAGTCCCTATAAGTCCCTCC 58.197 44.000 0.00 0.00 0.00 4.30
4816 8329 7.729431 ACAACTATAAGTCCCTATAAGTCCCTC 59.271 40.741 0.00 0.00 0.00 4.30
4817 8330 7.602868 ACAACTATAAGTCCCTATAAGTCCCT 58.397 38.462 0.00 0.00 0.00 4.20
4818 8331 7.852550 ACAACTATAAGTCCCTATAAGTCCC 57.147 40.000 0.00 0.00 0.00 4.46
4827 8340 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
4837 8350 9.448587 AAGTCCCTATAAGACCATATTACAACT 57.551 33.333 0.09 0.00 34.67 3.16
4860 8373 7.311109 CCTGTTTGGTTCCTAGGACTTATAAGT 60.311 40.741 18.05 18.05 43.16 2.24
4861 8374 7.048512 CCTGTTTGGTTCCTAGGACTTATAAG 58.951 42.308 12.22 11.05 0.00 1.73
4862 8375 6.954232 CCTGTTTGGTTCCTAGGACTTATAA 58.046 40.000 12.22 0.00 0.00 0.98
4863 8376 6.555463 CCTGTTTGGTTCCTAGGACTTATA 57.445 41.667 12.22 0.00 0.00 0.98
4864 8377 5.437191 CCTGTTTGGTTCCTAGGACTTAT 57.563 43.478 12.22 0.00 0.00 1.73
4865 8378 4.903045 CCTGTTTGGTTCCTAGGACTTA 57.097 45.455 12.22 0.00 0.00 2.24
4866 8379 3.790089 CCTGTTTGGTTCCTAGGACTT 57.210 47.619 12.22 0.00 0.00 3.01
4878 8391 5.240844 CACTAAAAAGTCCCTACCTGTTTGG 59.759 44.000 0.00 0.00 42.93 3.28
4879 8392 6.017357 GTCACTAAAAAGTCCCTACCTGTTTG 60.017 42.308 0.00 0.00 0.00 2.93
4880 8393 6.060136 GTCACTAAAAAGTCCCTACCTGTTT 58.940 40.000 0.00 0.00 0.00 2.83
4881 8394 5.368816 AGTCACTAAAAAGTCCCTACCTGTT 59.631 40.000 0.00 0.00 0.00 3.16
4882 8395 4.906060 AGTCACTAAAAAGTCCCTACCTGT 59.094 41.667 0.00 0.00 0.00 4.00
4883 8396 5.485209 AGTCACTAAAAAGTCCCTACCTG 57.515 43.478 0.00 0.00 0.00 4.00
4884 8397 5.221864 CCAAGTCACTAAAAAGTCCCTACCT 60.222 44.000 0.00 0.00 0.00 3.08
4885 8398 5.001874 CCAAGTCACTAAAAAGTCCCTACC 58.998 45.833 0.00 0.00 0.00 3.18
4886 8399 5.001874 CCCAAGTCACTAAAAAGTCCCTAC 58.998 45.833 0.00 0.00 0.00 3.18
4887 8400 4.909088 TCCCAAGTCACTAAAAAGTCCCTA 59.091 41.667 0.00 0.00 0.00 3.53
4888 8401 3.720002 TCCCAAGTCACTAAAAAGTCCCT 59.280 43.478 0.00 0.00 0.00 4.20
4889 8402 3.819337 GTCCCAAGTCACTAAAAAGTCCC 59.181 47.826 0.00 0.00 0.00 4.46
4890 8403 4.715713 AGTCCCAAGTCACTAAAAAGTCC 58.284 43.478 0.00 0.00 0.00 3.85
4891 8404 7.981102 ATAAGTCCCAAGTCACTAAAAAGTC 57.019 36.000 0.00 0.00 0.00 3.01
4892 8405 9.503399 CTTATAAGTCCCAAGTCACTAAAAAGT 57.497 33.333 4.18 0.00 0.00 2.66
4893 8406 9.503399 ACTTATAAGTCCCAAGTCACTAAAAAG 57.497 33.333 12.50 0.00 32.86 2.27
4894 8407 9.856162 AACTTATAAGTCCCAAGTCACTAAAAA 57.144 29.630 18.28 0.00 38.57 1.94
4895 8408 9.280174 CAACTTATAAGTCCCAAGTCACTAAAA 57.720 33.333 18.28 0.00 38.57 1.52
4896 8409 7.881232 CCAACTTATAAGTCCCAAGTCACTAAA 59.119 37.037 18.28 0.00 38.57 1.85
4897 8410 7.391620 CCAACTTATAAGTCCCAAGTCACTAA 58.608 38.462 18.28 0.00 38.57 2.24
4898 8411 6.070424 CCCAACTTATAAGTCCCAAGTCACTA 60.070 42.308 18.28 0.00 38.57 2.74
4899 8412 5.280521 CCCAACTTATAAGTCCCAAGTCACT 60.281 44.000 18.28 0.00 38.57 3.41
4900 8413 4.941873 CCCAACTTATAAGTCCCAAGTCAC 59.058 45.833 18.28 0.00 38.57 3.67
4901 8414 4.847512 TCCCAACTTATAAGTCCCAAGTCA 59.152 41.667 18.28 0.00 38.57 3.41
4902 8415 5.045797 AGTCCCAACTTATAAGTCCCAAGTC 60.046 44.000 18.28 6.78 38.57 3.01
4903 8416 4.850386 AGTCCCAACTTATAAGTCCCAAGT 59.150 41.667 18.28 5.74 38.57 3.16
4904 8417 5.437191 AGTCCCAACTTATAAGTCCCAAG 57.563 43.478 18.28 6.66 38.57 3.61
4905 8418 6.956102 TTAGTCCCAACTTATAAGTCCCAA 57.044 37.500 18.28 3.05 38.57 4.12
4906 8419 6.956102 TTTAGTCCCAACTTATAAGTCCCA 57.044 37.500 18.28 1.06 38.57 4.37
4934 8447 6.822170 CCTGTTTGGTTTATAAGTCCTAGGAC 59.178 42.308 31.29 31.29 44.86 3.85
4935 8448 6.069847 CCCTGTTTGGTTTATAAGTCCTAGGA 60.070 42.308 7.62 7.62 0.00 2.94
4936 8449 6.120220 CCCTGTTTGGTTTATAAGTCCTAGG 58.880 44.000 0.82 0.82 0.00 3.02
4937 8450 5.589050 GCCCTGTTTGGTTTATAAGTCCTAG 59.411 44.000 9.23 0.00 0.00 3.02
4938 8451 5.503002 GCCCTGTTTGGTTTATAAGTCCTA 58.497 41.667 9.23 1.38 0.00 2.94
4939 8452 4.341487 GCCCTGTTTGGTTTATAAGTCCT 58.659 43.478 9.23 0.00 0.00 3.85
4940 8453 3.446161 GGCCCTGTTTGGTTTATAAGTCC 59.554 47.826 0.00 2.91 0.00 3.85
4941 8454 4.341487 AGGCCCTGTTTGGTTTATAAGTC 58.659 43.478 0.00 0.00 0.00 3.01
4942 8455 4.397919 AGGCCCTGTTTGGTTTATAAGT 57.602 40.909 0.00 0.00 0.00 2.24
4943 8456 5.258051 TGTAGGCCCTGTTTGGTTTATAAG 58.742 41.667 0.00 0.00 0.00 1.73
4944 8457 5.258216 TGTAGGCCCTGTTTGGTTTATAA 57.742 39.130 0.00 0.00 0.00 0.98
4945 8458 4.931027 TGTAGGCCCTGTTTGGTTTATA 57.069 40.909 0.00 0.00 0.00 0.98
4946 8459 3.818295 TGTAGGCCCTGTTTGGTTTAT 57.182 42.857 0.00 0.00 0.00 1.40
4947 8460 3.818295 ATGTAGGCCCTGTTTGGTTTA 57.182 42.857 0.00 0.00 0.00 2.01
4948 8461 2.694616 ATGTAGGCCCTGTTTGGTTT 57.305 45.000 0.00 0.00 0.00 3.27
4949 8462 4.331159 AATATGTAGGCCCTGTTTGGTT 57.669 40.909 0.00 0.00 0.00 3.67
4950 8463 4.264172 TGAAATATGTAGGCCCTGTTTGGT 60.264 41.667 0.00 0.00 0.00 3.67
4951 8464 4.277476 TGAAATATGTAGGCCCTGTTTGG 58.723 43.478 0.00 0.00 0.00 3.28
4952 8465 5.913137 TTGAAATATGTAGGCCCTGTTTG 57.087 39.130 0.00 0.00 0.00 2.93
4953 8466 6.262273 CGTATTGAAATATGTAGGCCCTGTTT 59.738 38.462 0.00 0.00 0.00 2.83
4954 8467 5.763204 CGTATTGAAATATGTAGGCCCTGTT 59.237 40.000 0.00 0.00 0.00 3.16
4955 8468 5.071250 TCGTATTGAAATATGTAGGCCCTGT 59.929 40.000 0.00 0.00 31.38 4.00
4956 8469 5.547465 TCGTATTGAAATATGTAGGCCCTG 58.453 41.667 0.00 0.00 31.38 4.45
4957 8470 5.818678 TCGTATTGAAATATGTAGGCCCT 57.181 39.130 0.00 0.00 31.38 5.19
4958 8471 5.180680 GGTTCGTATTGAAATATGTAGGCCC 59.819 44.000 0.00 0.00 38.60 5.80
4959 8472 5.995897 AGGTTCGTATTGAAATATGTAGGCC 59.004 40.000 0.00 0.00 38.60 5.19
4960 8473 7.654520 TGTAGGTTCGTATTGAAATATGTAGGC 59.345 37.037 2.95 0.00 38.60 3.93
4961 8474 9.537192 TTGTAGGTTCGTATTGAAATATGTAGG 57.463 33.333 2.95 0.00 38.60 3.18
4977 8490 4.755411 TCTCCTGCTAATTTGTAGGTTCG 58.245 43.478 19.95 11.86 40.14 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.