Multiple sequence alignment - TraesCS4B01G135600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G135600 chr4B 100.000 3206 0 0 1 3206 178070144 178073349 0.000000e+00 5921.0
1 TraesCS4B01G135600 chr4B 83.562 73 12 0 1867 1939 119822942 119822870 5.740000e-08 69.4
2 TraesCS4B01G135600 chr4D 96.051 2532 69 16 683 3206 116269888 116272396 0.000000e+00 4093.0
3 TraesCS4B01G135600 chr4D 93.836 146 8 1 1 146 116269661 116269805 5.380000e-53 219.0
4 TraesCS4B01G135600 chr4D 83.125 160 15 11 2391 2542 365080885 365080730 5.580000e-28 135.0
5 TraesCS4B01G135600 chr4D 93.258 89 6 0 297 385 116269802 116269890 7.220000e-27 132.0
6 TraesCS4B01G135600 chr4A 95.340 2532 79 16 685 3206 460240492 460237990 0.000000e+00 3986.0
7 TraesCS4B01G135600 chr4A 95.205 146 6 1 1 146 460240720 460240576 2.490000e-56 230.0
8 TraesCS4B01G135600 chr4A 93.860 114 7 0 377 490 733763120 733763007 4.250000e-39 172.0
9 TraesCS4B01G135600 chr4A 91.860 86 6 1 297 382 460240579 460240495 5.620000e-23 119.0
10 TraesCS4B01G135600 chr3B 73.764 789 161 30 1232 2000 822880797 822880035 5.270000e-68 268.0
11 TraesCS4B01G135600 chr3B 92.481 133 6 4 377 506 217773282 217773151 1.520000e-43 187.0
12 TraesCS4B01G135600 chr3B 82.911 158 19 7 2391 2547 815372926 815372776 5.580000e-28 135.0
13 TraesCS4B01G135600 chr3B 85.271 129 19 0 1817 1945 566162409 566162537 2.010000e-27 134.0
14 TraesCS4B01G135600 chr1D 88.535 157 17 1 143 299 79946377 79946222 4.220000e-44 189.0
15 TraesCS4B01G135600 chr1D 87.975 158 17 2 143 299 80001301 80001145 5.460000e-43 185.0
16 TraesCS4B01G135600 chr1D 92.800 125 6 3 377 499 386156713 386156836 9.140000e-41 178.0
17 TraesCS4B01G135600 chr1D 84.354 147 17 6 2391 2537 365716915 365717055 4.310000e-29 139.0
18 TraesCS4B01G135600 chr1D 80.723 166 27 3 1586 1750 171162868 171162707 1.210000e-24 124.0
19 TraesCS4B01G135600 chr6B 96.460 113 4 0 384 496 216677075 216676963 1.520000e-43 187.0
20 TraesCS4B01G135600 chr6B 94.118 119 7 0 383 501 455146514 455146396 7.060000e-42 182.0
21 TraesCS4B01G135600 chr1B 87.975 158 17 2 143 299 130859033 130858877 5.460000e-43 185.0
22 TraesCS4B01G135600 chr1B 94.068 118 5 2 384 501 624663025 624662910 9.140000e-41 178.0
23 TraesCS4B01G135600 chr1B 86.538 156 17 3 2387 2542 491543496 491543345 5.500000e-38 169.0
24 TraesCS4B01G135600 chr1B 82.812 128 18 2 1630 1756 226357872 226357748 9.400000e-21 111.0
25 TraesCS4B01G135600 chr3A 87.117 163 20 1 139 301 739801400 739801239 1.960000e-42 183.0
26 TraesCS4B01G135600 chr3A 82.911 158 19 7 2392 2544 744995482 744995328 5.580000e-28 135.0
27 TraesCS4B01G135600 chr3A 84.496 129 20 0 1817 1945 571791481 571791609 9.340000e-26 128.0
28 TraesCS4B01G135600 chr2D 87.898 157 17 2 142 298 29624352 29624506 1.960000e-42 183.0
29 TraesCS4B01G135600 chr2D 85.799 169 22 2 135 303 556055651 556055817 9.140000e-41 178.0
30 TraesCS4B01G135600 chr2D 85.380 171 23 2 135 305 86086124 86085956 3.290000e-40 176.0
31 TraesCS4B01G135600 chr2D 83.333 78 13 0 1670 1747 39320893 39320816 4.440000e-09 73.1
32 TraesCS4B01G135600 chr2D 81.481 81 15 0 1667 1747 50238187 50238267 2.060000e-07 67.6
33 TraesCS4B01G135600 chr7B 94.828 116 6 0 378 493 261055914 261056029 7.060000e-42 182.0
34 TraesCS4B01G135600 chr7B 75.781 128 31 0 1865 1992 711061472 711061345 7.420000e-07 65.8
35 TraesCS4B01G135600 chr7A 87.821 156 18 1 143 298 137770553 137770399 7.060000e-42 182.0
36 TraesCS4B01G135600 chr2A 85.965 171 21 3 135 305 86446018 86445851 2.540000e-41 180.0
37 TraesCS4B01G135600 chr2A 82.716 81 14 0 1667 1747 51945270 51945350 4.440000e-09 73.1
38 TraesCS4B01G135600 chr2A 100.000 29 0 0 1715 1743 660224051 660224079 2.000000e-03 54.7
39 TraesCS4B01G135600 chr5B 91.667 132 6 5 381 511 493017646 493017773 9.140000e-41 178.0
40 TraesCS4B01G135600 chr5B 91.667 60 5 0 1886 1945 79804843 79804784 2.050000e-12 84.2
41 TraesCS4B01G135600 chr5A 90.152 132 12 1 371 501 363850911 363850780 1.530000e-38 171.0
42 TraesCS4B01G135600 chr5A 75.138 181 30 5 2983 3163 332653207 332653042 1.600000e-08 71.3
43 TraesCS4B01G135600 chr6D 85.161 155 17 5 2386 2539 363384205 363384354 1.540000e-33 154.0
44 TraesCS4B01G135600 chr3D 82.609 161 20 7 2392 2547 120289849 120290006 5.580000e-28 135.0
45 TraesCS4B01G135600 chr3D 84.496 129 20 0 1817 1945 433415451 433415579 9.340000e-26 128.0
46 TraesCS4B01G135600 chr1A 80.120 166 28 3 1586 1750 229169898 229169737 5.620000e-23 119.0
47 TraesCS4B01G135600 chr6A 75.882 170 39 2 1818 1986 570382455 570382287 5.700000e-13 86.1
48 TraesCS4B01G135600 chr7D 84.286 70 11 0 530 599 50642619 50642688 5.740000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G135600 chr4B 178070144 178073349 3205 False 5921.000000 5921 100.000000 1 3206 1 chr4B.!!$F1 3205
1 TraesCS4B01G135600 chr4D 116269661 116272396 2735 False 1481.333333 4093 94.381667 1 3206 3 chr4D.!!$F1 3205
2 TraesCS4B01G135600 chr4A 460237990 460240720 2730 True 1445.000000 3986 94.135000 1 3206 3 chr4A.!!$R2 3205
3 TraesCS4B01G135600 chr3B 822880035 822880797 762 True 268.000000 268 73.764000 1232 2000 1 chr3B.!!$R3 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 599 0.037975 TTGCGAAACGGAGGGAGTAC 60.038 55.0 0.0 0.0 0.0 2.73 F
600 601 0.245813 GCGAAACGGAGGGAGTACTT 59.754 55.0 0.0 0.0 0.0 2.24 F
643 644 0.684535 TCATTCAGTCAACCCAGCGA 59.315 50.0 0.0 0.0 0.0 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2163 2195 0.096628 CAGAGGGTAAGTCGTCGTCG 59.903 60.0 0.0 0.0 38.55 5.12 R
2164 2196 0.179169 GCAGAGGGTAAGTCGTCGTC 60.179 60.0 0.0 0.0 0.00 4.20 R
2306 2341 0.530744 GAGCCAAAATCCCCCGTTTC 59.469 55.0 0.0 0.0 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 146 3.405170 GCGTGTGCAAGCAAATATACT 57.595 42.857 5.30 0.00 42.15 2.12
146 147 3.354397 GCGTGTGCAAGCAAATATACTC 58.646 45.455 5.30 0.00 42.15 2.59
147 148 3.788797 GCGTGTGCAAGCAAATATACTCC 60.789 47.826 5.30 0.00 42.15 3.85
148 149 3.623060 CGTGTGCAAGCAAATATACTCCT 59.377 43.478 0.00 0.00 0.00 3.69
149 150 4.094887 CGTGTGCAAGCAAATATACTCCTT 59.905 41.667 0.00 0.00 0.00 3.36
150 151 5.573146 GTGTGCAAGCAAATATACTCCTTC 58.427 41.667 0.00 0.00 0.00 3.46
151 152 4.640201 TGTGCAAGCAAATATACTCCTTCC 59.360 41.667 0.00 0.00 0.00 3.46
152 153 4.640201 GTGCAAGCAAATATACTCCTTCCA 59.360 41.667 0.00 0.00 0.00 3.53
153 154 5.300286 GTGCAAGCAAATATACTCCTTCCAT 59.700 40.000 0.00 0.00 0.00 3.41
154 155 5.893255 TGCAAGCAAATATACTCCTTCCATT 59.107 36.000 0.00 0.00 0.00 3.16
155 156 6.039717 TGCAAGCAAATATACTCCTTCCATTC 59.960 38.462 0.00 0.00 0.00 2.67
156 157 6.515696 GCAAGCAAATATACTCCTTCCATTCC 60.516 42.308 0.00 0.00 0.00 3.01
157 158 5.635120 AGCAAATATACTCCTTCCATTCCC 58.365 41.667 0.00 0.00 0.00 3.97
158 159 5.373854 AGCAAATATACTCCTTCCATTCCCT 59.626 40.000 0.00 0.00 0.00 4.20
159 160 6.562608 AGCAAATATACTCCTTCCATTCCCTA 59.437 38.462 0.00 0.00 0.00 3.53
160 161 7.073725 AGCAAATATACTCCTTCCATTCCCTAA 59.926 37.037 0.00 0.00 0.00 2.69
161 162 7.890655 GCAAATATACTCCTTCCATTCCCTAAT 59.109 37.037 0.00 0.00 0.00 1.73
168 169 8.208575 ACTCCTTCCATTCCCTAATATAAGAC 57.791 38.462 0.00 0.00 0.00 3.01
169 170 7.237887 ACTCCTTCCATTCCCTAATATAAGACC 59.762 40.741 0.00 0.00 0.00 3.85
170 171 7.321530 TCCTTCCATTCCCTAATATAAGACCT 58.678 38.462 0.00 0.00 0.00 3.85
171 172 7.799583 TCCTTCCATTCCCTAATATAAGACCTT 59.200 37.037 0.00 0.00 0.00 3.50
172 173 8.448816 CCTTCCATTCCCTAATATAAGACCTTT 58.551 37.037 0.00 0.00 0.00 3.11
173 174 9.868160 CTTCCATTCCCTAATATAAGACCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
176 177 9.232473 CCATTCCCTAATATAAGACCTTTTAGC 57.768 37.037 0.00 0.00 0.00 3.09
215 216 9.563898 TTGACTACATACGTACTAAAATGAGTG 57.436 33.333 0.00 0.00 0.00 3.51
216 217 8.949177 TGACTACATACGTACTAAAATGAGTGA 58.051 33.333 0.00 0.00 0.00 3.41
217 218 9.778993 GACTACATACGTACTAAAATGAGTGAA 57.221 33.333 0.00 0.00 0.00 3.18
218 219 9.565213 ACTACATACGTACTAAAATGAGTGAAC 57.435 33.333 0.00 0.00 0.00 3.18
219 220 9.563898 CTACATACGTACTAAAATGAGTGAACA 57.436 33.333 0.00 0.00 0.00 3.18
220 221 8.997621 ACATACGTACTAAAATGAGTGAACAT 57.002 30.769 0.00 0.00 0.00 2.71
224 225 8.997621 ACGTACTAAAATGAGTGAACATACAT 57.002 30.769 0.00 0.00 0.00 2.29
225 226 8.869897 ACGTACTAAAATGAGTGAACATACATG 58.130 33.333 0.00 0.00 0.00 3.21
226 227 7.846107 CGTACTAAAATGAGTGAACATACATGC 59.154 37.037 0.00 0.00 0.00 4.06
227 228 7.088589 ACTAAAATGAGTGAACATACATGCC 57.911 36.000 0.00 0.00 0.00 4.40
228 229 5.981088 AAAATGAGTGAACATACATGCCA 57.019 34.783 0.00 0.00 0.00 4.92
229 230 5.981088 AAATGAGTGAACATACATGCCAA 57.019 34.783 0.00 0.00 0.00 4.52
230 231 5.981088 AATGAGTGAACATACATGCCAAA 57.019 34.783 0.00 0.00 0.00 3.28
231 232 5.981088 ATGAGTGAACATACATGCCAAAA 57.019 34.783 0.00 0.00 0.00 2.44
232 233 5.981088 TGAGTGAACATACATGCCAAAAT 57.019 34.783 0.00 0.00 0.00 1.82
233 234 5.712004 TGAGTGAACATACATGCCAAAATG 58.288 37.500 0.00 0.00 0.00 2.32
234 235 5.243507 TGAGTGAACATACATGCCAAAATGT 59.756 36.000 0.00 0.00 43.21 2.71
235 236 5.472148 AGTGAACATACATGCCAAAATGTG 58.528 37.500 0.00 0.00 40.93 3.21
236 237 5.010922 AGTGAACATACATGCCAAAATGTGT 59.989 36.000 0.00 0.00 40.93 3.72
237 238 5.345741 GTGAACATACATGCCAAAATGTGTC 59.654 40.000 0.00 0.00 40.93 3.67
238 239 5.243507 TGAACATACATGCCAAAATGTGTCT 59.756 36.000 0.00 0.00 40.93 3.41
239 240 5.063180 ACATACATGCCAAAATGTGTCTG 57.937 39.130 0.00 0.00 40.93 3.51
240 241 4.766373 ACATACATGCCAAAATGTGTCTGA 59.234 37.500 0.00 0.00 40.93 3.27
241 242 5.243507 ACATACATGCCAAAATGTGTCTGAA 59.756 36.000 0.00 0.00 40.93 3.02
242 243 4.877378 ACATGCCAAAATGTGTCTGAAT 57.123 36.364 0.00 0.00 39.32 2.57
243 244 5.981088 ACATGCCAAAATGTGTCTGAATA 57.019 34.783 0.00 0.00 39.32 1.75
244 245 6.534475 ACATGCCAAAATGTGTCTGAATAT 57.466 33.333 0.00 0.00 39.32 1.28
245 246 6.334989 ACATGCCAAAATGTGTCTGAATATG 58.665 36.000 0.00 0.00 39.32 1.78
246 247 5.981088 TGCCAAAATGTGTCTGAATATGT 57.019 34.783 0.00 0.00 0.00 2.29
247 248 7.122501 ACATGCCAAAATGTGTCTGAATATGTA 59.877 33.333 0.00 0.00 39.32 2.29
248 249 7.643569 TGCCAAAATGTGTCTGAATATGTAT 57.356 32.000 0.00 0.00 0.00 2.29
249 250 7.482474 TGCCAAAATGTGTCTGAATATGTATG 58.518 34.615 0.00 0.00 0.00 2.39
250 251 7.338957 TGCCAAAATGTGTCTGAATATGTATGA 59.661 33.333 0.00 0.00 0.00 2.15
251 252 8.190122 GCCAAAATGTGTCTGAATATGTATGAA 58.810 33.333 0.00 0.00 0.00 2.57
258 259 9.889128 TGTGTCTGAATATGTATGAATCAAGAA 57.111 29.630 0.00 0.00 0.00 2.52
292 293 7.507797 AAGATCTTATATGAGGGAATGGAGG 57.492 40.000 6.06 0.00 0.00 4.30
293 294 5.969402 AGATCTTATATGAGGGAATGGAGGG 59.031 44.000 0.00 0.00 0.00 4.30
294 295 5.369119 TCTTATATGAGGGAATGGAGGGA 57.631 43.478 0.00 0.00 0.00 4.20
295 296 5.345418 TCTTATATGAGGGAATGGAGGGAG 58.655 45.833 0.00 0.00 0.00 4.30
296 297 3.663298 ATATGAGGGAATGGAGGGAGT 57.337 47.619 0.00 0.00 0.00 3.85
297 298 4.785173 ATATGAGGGAATGGAGGGAGTA 57.215 45.455 0.00 0.00 0.00 2.59
298 299 2.176247 TGAGGGAATGGAGGGAGTAC 57.824 55.000 0.00 0.00 0.00 2.73
305 306 4.383880 GGGAATGGAGGGAGTACTTGTTAC 60.384 50.000 0.00 0.00 0.00 2.50
387 388 9.868277 AGCAAGCTGATTAGATAACATATACTC 57.132 33.333 0.00 0.00 0.00 2.59
388 389 9.092876 GCAAGCTGATTAGATAACATATACTCC 57.907 37.037 0.00 0.00 0.00 3.85
389 390 9.593134 CAAGCTGATTAGATAACATATACTCCC 57.407 37.037 0.00 0.00 0.00 4.30
390 391 9.554053 AAGCTGATTAGATAACATATACTCCCT 57.446 33.333 0.00 0.00 0.00 4.20
391 392 9.196139 AGCTGATTAGATAACATATACTCCCTC 57.804 37.037 0.00 0.00 0.00 4.30
392 393 8.417884 GCTGATTAGATAACATATACTCCCTCC 58.582 40.741 0.00 0.00 0.00 4.30
393 394 8.521170 TGATTAGATAACATATACTCCCTCCG 57.479 38.462 0.00 0.00 0.00 4.63
394 395 8.114102 TGATTAGATAACATATACTCCCTCCGT 58.886 37.037 0.00 0.00 0.00 4.69
395 396 8.896722 ATTAGATAACATATACTCCCTCCGTT 57.103 34.615 0.00 0.00 0.00 4.44
396 397 6.837471 AGATAACATATACTCCCTCCGTTC 57.163 41.667 0.00 0.00 0.00 3.95
397 398 5.715753 AGATAACATATACTCCCTCCGTTCC 59.284 44.000 0.00 0.00 0.00 3.62
398 399 3.323774 ACATATACTCCCTCCGTTCCA 57.676 47.619 0.00 0.00 0.00 3.53
399 400 3.649843 ACATATACTCCCTCCGTTCCAA 58.350 45.455 0.00 0.00 0.00 3.53
400 401 4.035112 ACATATACTCCCTCCGTTCCAAA 58.965 43.478 0.00 0.00 0.00 3.28
401 402 4.658901 ACATATACTCCCTCCGTTCCAAAT 59.341 41.667 0.00 0.00 0.00 2.32
402 403 5.132144 ACATATACTCCCTCCGTTCCAAATT 59.868 40.000 0.00 0.00 0.00 1.82
403 404 6.328148 ACATATACTCCCTCCGTTCCAAATTA 59.672 38.462 0.00 0.00 0.00 1.40
404 405 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
405 406 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
406 407 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
407 408 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
408 409 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
409 410 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
410 411 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
411 412 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
412 413 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
413 414 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
414 415 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
415 416 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
416 417 3.655486 TCCAAATTACTCGTCGCTGAAA 58.345 40.909 0.00 0.00 0.00 2.69
417 418 4.250464 TCCAAATTACTCGTCGCTGAAAT 58.750 39.130 0.00 0.00 0.00 2.17
418 419 4.092821 TCCAAATTACTCGTCGCTGAAATG 59.907 41.667 0.00 0.00 0.00 2.32
419 420 4.334443 CAAATTACTCGTCGCTGAAATGG 58.666 43.478 0.00 0.00 0.00 3.16
420 421 3.520290 ATTACTCGTCGCTGAAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
421 422 3.520290 TTACTCGTCGCTGAAATGGAT 57.480 42.857 0.00 0.00 0.00 3.41
422 423 1.645034 ACTCGTCGCTGAAATGGATG 58.355 50.000 0.00 0.00 0.00 3.51
423 424 1.066858 ACTCGTCGCTGAAATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
424 425 1.590238 CTCGTCGCTGAAATGGATGTC 59.410 52.381 0.00 0.00 0.00 3.06
425 426 1.204704 TCGTCGCTGAAATGGATGTCT 59.795 47.619 0.00 0.00 0.00 3.41
426 427 1.590238 CGTCGCTGAAATGGATGTCTC 59.410 52.381 0.00 0.00 0.00 3.36
427 428 2.736719 CGTCGCTGAAATGGATGTCTCT 60.737 50.000 0.00 0.00 0.00 3.10
428 429 3.489229 CGTCGCTGAAATGGATGTCTCTA 60.489 47.826 0.00 0.00 0.00 2.43
429 430 4.047822 GTCGCTGAAATGGATGTCTCTAG 58.952 47.826 0.00 0.00 0.00 2.43
430 431 3.954258 TCGCTGAAATGGATGTCTCTAGA 59.046 43.478 0.00 0.00 0.00 2.43
431 432 4.402474 TCGCTGAAATGGATGTCTCTAGAA 59.598 41.667 0.00 0.00 0.00 2.10
432 433 5.069648 TCGCTGAAATGGATGTCTCTAGAAT 59.930 40.000 0.00 0.00 0.00 2.40
433 434 5.757320 CGCTGAAATGGATGTCTCTAGAATT 59.243 40.000 0.00 0.00 0.00 2.17
434 435 6.925718 CGCTGAAATGGATGTCTCTAGAATTA 59.074 38.462 0.00 0.00 0.00 1.40
435 436 7.439356 CGCTGAAATGGATGTCTCTAGAATTAA 59.561 37.037 0.00 0.00 0.00 1.40
436 437 9.113838 GCTGAAATGGATGTCTCTAGAATTAAA 57.886 33.333 0.00 0.00 0.00 1.52
475 476 9.645059 ACATCCATATATGAGACAAGTAATTCG 57.355 33.333 14.54 0.00 0.00 3.34
476 477 9.091784 CATCCATATATGAGACAAGTAATTCGG 57.908 37.037 14.54 0.00 0.00 4.30
477 478 8.417273 TCCATATATGAGACAAGTAATTCGGA 57.583 34.615 14.54 0.00 0.00 4.55
478 479 8.866093 TCCATATATGAGACAAGTAATTCGGAA 58.134 33.333 14.54 0.00 0.00 4.30
479 480 8.926710 CCATATATGAGACAAGTAATTCGGAAC 58.073 37.037 14.54 0.00 0.00 3.62
495 496 2.732763 GGAACGGAGGGAGTACTTACT 58.267 52.381 0.00 0.00 39.71 2.24
496 497 3.891049 GGAACGGAGGGAGTACTTACTA 58.109 50.000 0.00 0.00 36.50 1.82
497 498 3.882288 GGAACGGAGGGAGTACTTACTAG 59.118 52.174 0.00 0.00 36.50 2.57
498 499 4.522114 GAACGGAGGGAGTACTTACTAGT 58.478 47.826 0.00 0.00 36.50 2.57
499 500 5.396884 GGAACGGAGGGAGTACTTACTAGTA 60.397 48.000 0.00 0.00 36.50 1.82
521 522 8.363761 AGTACTAGTATTATAGGTTGATGCCC 57.636 38.462 5.75 0.00 0.00 5.36
522 523 6.622427 ACTAGTATTATAGGTTGATGCCCC 57.378 41.667 0.00 0.00 0.00 5.80
523 524 6.088819 ACTAGTATTATAGGTTGATGCCCCA 58.911 40.000 0.00 0.00 0.00 4.96
524 525 6.735704 ACTAGTATTATAGGTTGATGCCCCAT 59.264 38.462 0.00 0.00 0.00 4.00
525 526 7.904564 ACTAGTATTATAGGTTGATGCCCCATA 59.095 37.037 0.00 0.00 0.00 2.74
526 527 6.958767 AGTATTATAGGTTGATGCCCCATAC 58.041 40.000 0.00 0.00 0.00 2.39
527 528 6.735704 AGTATTATAGGTTGATGCCCCATACT 59.264 38.462 0.00 0.00 0.00 2.12
528 529 5.499004 TTATAGGTTGATGCCCCATACTC 57.501 43.478 0.00 0.00 0.00 2.59
529 530 0.469917 AGGTTGATGCCCCATACTCG 59.530 55.000 0.00 0.00 0.00 4.18
530 531 0.535102 GGTTGATGCCCCATACTCGG 60.535 60.000 0.00 0.00 0.00 4.63
531 532 0.180406 GTTGATGCCCCATACTCGGT 59.820 55.000 0.00 0.00 0.00 4.69
532 533 0.916086 TTGATGCCCCATACTCGGTT 59.084 50.000 0.00 0.00 0.00 4.44
533 534 1.796017 TGATGCCCCATACTCGGTTA 58.204 50.000 0.00 0.00 0.00 2.85
534 535 2.120312 TGATGCCCCATACTCGGTTAA 58.880 47.619 0.00 0.00 0.00 2.01
535 536 2.506231 TGATGCCCCATACTCGGTTAAA 59.494 45.455 0.00 0.00 0.00 1.52
536 537 3.137544 TGATGCCCCATACTCGGTTAAAT 59.862 43.478 0.00 0.00 0.00 1.40
537 538 3.655615 TGCCCCATACTCGGTTAAATT 57.344 42.857 0.00 0.00 0.00 1.82
538 539 3.970842 TGCCCCATACTCGGTTAAATTT 58.029 40.909 0.00 0.00 0.00 1.82
539 540 5.113446 TGCCCCATACTCGGTTAAATTTA 57.887 39.130 0.00 0.00 0.00 1.40
540 541 5.697067 TGCCCCATACTCGGTTAAATTTAT 58.303 37.500 0.00 0.00 0.00 1.40
541 542 6.130569 TGCCCCATACTCGGTTAAATTTATT 58.869 36.000 0.00 0.00 0.00 1.40
542 543 6.039941 TGCCCCATACTCGGTTAAATTTATTG 59.960 38.462 0.00 0.00 0.00 1.90
543 544 6.040054 GCCCCATACTCGGTTAAATTTATTGT 59.960 38.462 0.00 0.00 0.00 2.71
544 545 7.645402 CCCCATACTCGGTTAAATTTATTGTC 58.355 38.462 0.00 0.00 0.00 3.18
545 546 7.283580 CCCCATACTCGGTTAAATTTATTGTCA 59.716 37.037 0.00 0.00 0.00 3.58
546 547 8.679100 CCCATACTCGGTTAAATTTATTGTCAA 58.321 33.333 0.00 0.00 0.00 3.18
567 568 9.814899 TGTCAAATTTAAATCTTGAAAAGCTCA 57.185 25.926 18.80 12.67 45.70 4.26
569 570 9.480053 TCAAATTTAAATCTTGAAAAGCTCAGG 57.520 29.630 16.59 0.00 45.70 3.86
570 571 7.895975 AATTTAAATCTTGAAAAGCTCAGGC 57.104 32.000 0.10 0.00 45.70 4.85
571 572 3.565905 AAATCTTGAAAAGCTCAGGCG 57.434 42.857 0.00 0.00 45.70 5.52
572 573 0.807496 ATCTTGAAAAGCTCAGGCGC 59.193 50.000 0.00 0.00 45.70 6.53
573 574 0.534877 TCTTGAAAAGCTCAGGCGCA 60.535 50.000 10.83 0.00 45.70 6.09
574 575 0.524862 CTTGAAAAGCTCAGGCGCAT 59.475 50.000 10.83 0.00 44.37 4.73
575 576 0.961019 TTGAAAAGCTCAGGCGCATT 59.039 45.000 10.83 0.00 44.37 3.56
576 577 1.819928 TGAAAAGCTCAGGCGCATTA 58.180 45.000 10.83 0.00 44.37 1.90
577 578 1.468520 TGAAAAGCTCAGGCGCATTAC 59.531 47.619 10.83 0.00 44.37 1.89
578 579 1.468520 GAAAAGCTCAGGCGCATTACA 59.531 47.619 10.83 0.00 44.37 2.41
579 580 1.755179 AAAGCTCAGGCGCATTACAT 58.245 45.000 10.83 0.00 44.37 2.29
580 581 1.755179 AAGCTCAGGCGCATTACATT 58.245 45.000 10.83 0.00 44.37 2.71
581 582 1.019673 AGCTCAGGCGCATTACATTG 58.980 50.000 10.83 0.00 44.37 2.82
582 583 0.593263 GCTCAGGCGCATTACATTGC 60.593 55.000 10.83 0.00 39.29 3.56
590 591 2.535934 GCATTACATTGCGAAACGGA 57.464 45.000 0.00 0.00 32.06 4.69
591 592 2.440501 GCATTACATTGCGAAACGGAG 58.559 47.619 0.00 0.00 32.06 4.63
592 593 2.791158 GCATTACATTGCGAAACGGAGG 60.791 50.000 0.00 0.00 32.06 4.30
593 594 1.444836 TTACATTGCGAAACGGAGGG 58.555 50.000 0.00 0.00 0.00 4.30
594 595 0.609151 TACATTGCGAAACGGAGGGA 59.391 50.000 0.00 0.00 0.00 4.20
595 596 0.673644 ACATTGCGAAACGGAGGGAG 60.674 55.000 0.00 0.00 0.00 4.30
596 597 0.673644 CATTGCGAAACGGAGGGAGT 60.674 55.000 0.00 0.00 0.00 3.85
597 598 0.899720 ATTGCGAAACGGAGGGAGTA 59.100 50.000 0.00 0.00 0.00 2.59
598 599 0.037975 TTGCGAAACGGAGGGAGTAC 60.038 55.000 0.00 0.00 0.00 2.73
599 600 0.896940 TGCGAAACGGAGGGAGTACT 60.897 55.000 0.00 0.00 0.00 2.73
600 601 0.245813 GCGAAACGGAGGGAGTACTT 59.754 55.000 0.00 0.00 0.00 2.24
601 602 1.474077 GCGAAACGGAGGGAGTACTTA 59.526 52.381 0.00 0.00 0.00 2.24
602 603 2.094545 GCGAAACGGAGGGAGTACTTAA 60.095 50.000 0.00 0.00 0.00 1.85
603 604 3.614870 GCGAAACGGAGGGAGTACTTAAA 60.615 47.826 0.00 0.00 0.00 1.52
604 605 4.559153 CGAAACGGAGGGAGTACTTAAAA 58.441 43.478 0.00 0.00 0.00 1.52
605 606 5.173664 CGAAACGGAGGGAGTACTTAAAAT 58.826 41.667 0.00 0.00 0.00 1.82
606 607 5.290400 CGAAACGGAGGGAGTACTTAAAATC 59.710 44.000 0.00 0.00 0.00 2.17
607 608 4.382345 ACGGAGGGAGTACTTAAAATCG 57.618 45.455 0.00 0.60 0.00 3.34
608 609 4.019174 ACGGAGGGAGTACTTAAAATCGA 58.981 43.478 0.00 0.00 0.00 3.59
609 610 4.142293 ACGGAGGGAGTACTTAAAATCGAC 60.142 45.833 0.00 0.00 0.00 4.20
610 611 4.097589 CGGAGGGAGTACTTAAAATCGACT 59.902 45.833 0.00 0.00 0.00 4.18
611 612 5.349809 GGAGGGAGTACTTAAAATCGACTG 58.650 45.833 0.00 0.00 0.00 3.51
612 613 5.340439 AGGGAGTACTTAAAATCGACTGG 57.660 43.478 0.00 0.00 0.00 4.00
613 614 5.021458 AGGGAGTACTTAAAATCGACTGGA 58.979 41.667 0.00 0.00 0.00 3.86
614 615 5.482878 AGGGAGTACTTAAAATCGACTGGAA 59.517 40.000 0.00 0.00 0.00 3.53
615 616 5.811100 GGGAGTACTTAAAATCGACTGGAAG 59.189 44.000 0.00 0.00 42.29 3.46
616 617 5.811100 GGAGTACTTAAAATCGACTGGAAGG 59.189 44.000 0.00 0.00 39.30 3.46
617 618 6.350780 GGAGTACTTAAAATCGACTGGAAGGA 60.351 42.308 0.00 0.00 39.30 3.36
618 619 6.631962 AGTACTTAAAATCGACTGGAAGGAG 58.368 40.000 0.00 0.00 39.30 3.69
619 620 5.740290 ACTTAAAATCGACTGGAAGGAGA 57.260 39.130 0.00 0.00 39.30 3.71
620 621 6.110411 ACTTAAAATCGACTGGAAGGAGAA 57.890 37.500 0.00 0.00 39.30 2.87
621 622 6.166982 ACTTAAAATCGACTGGAAGGAGAAG 58.833 40.000 0.00 0.00 39.30 2.85
622 623 4.891992 AAAATCGACTGGAAGGAGAAGA 57.108 40.909 0.00 0.00 39.30 2.87
623 624 4.891992 AAATCGACTGGAAGGAGAAGAA 57.108 40.909 0.00 0.00 39.30 2.52
624 625 5.428184 AAATCGACTGGAAGGAGAAGAAT 57.572 39.130 0.00 0.00 39.30 2.40
625 626 4.664150 ATCGACTGGAAGGAGAAGAATC 57.336 45.455 0.00 0.00 39.30 2.52
626 627 3.431415 TCGACTGGAAGGAGAAGAATCA 58.569 45.455 0.00 0.00 39.30 2.57
627 628 4.026744 TCGACTGGAAGGAGAAGAATCAT 58.973 43.478 0.00 0.00 39.30 2.45
628 629 4.467795 TCGACTGGAAGGAGAAGAATCATT 59.532 41.667 0.00 0.00 39.30 2.57
629 630 4.808364 CGACTGGAAGGAGAAGAATCATTC 59.192 45.833 0.00 0.00 38.84 2.67
630 631 5.625426 CGACTGGAAGGAGAAGAATCATTCA 60.625 44.000 0.00 0.00 40.78 2.57
631 632 5.743117 ACTGGAAGGAGAAGAATCATTCAG 58.257 41.667 0.00 0.00 40.78 3.02
632 633 5.250313 ACTGGAAGGAGAAGAATCATTCAGT 59.750 40.000 0.00 0.00 40.78 3.41
633 634 5.738909 TGGAAGGAGAAGAATCATTCAGTC 58.261 41.667 0.00 0.00 40.78 3.51
634 635 5.249163 TGGAAGGAGAAGAATCATTCAGTCA 59.751 40.000 0.00 0.00 40.78 3.41
635 636 6.176183 GGAAGGAGAAGAATCATTCAGTCAA 58.824 40.000 0.00 0.00 40.78 3.18
636 637 6.093357 GGAAGGAGAAGAATCATTCAGTCAAC 59.907 42.308 0.00 0.00 40.78 3.18
637 638 5.495640 AGGAGAAGAATCATTCAGTCAACC 58.504 41.667 0.00 5.08 0.00 3.77
638 639 4.637977 GGAGAAGAATCATTCAGTCAACCC 59.362 45.833 0.00 0.00 0.00 4.11
639 640 5.246981 AGAAGAATCATTCAGTCAACCCA 57.753 39.130 0.00 0.00 0.00 4.51
640 641 5.251764 AGAAGAATCATTCAGTCAACCCAG 58.748 41.667 0.00 0.00 0.00 4.45
641 642 3.350833 AGAATCATTCAGTCAACCCAGC 58.649 45.455 0.00 0.00 0.00 4.85
642 643 1.742761 ATCATTCAGTCAACCCAGCG 58.257 50.000 0.00 0.00 0.00 5.18
643 644 0.684535 TCATTCAGTCAACCCAGCGA 59.315 50.000 0.00 0.00 0.00 4.93
644 645 1.278985 TCATTCAGTCAACCCAGCGAT 59.721 47.619 0.00 0.00 0.00 4.58
645 646 1.667724 CATTCAGTCAACCCAGCGATC 59.332 52.381 0.00 0.00 0.00 3.69
646 647 0.976641 TTCAGTCAACCCAGCGATCT 59.023 50.000 0.00 0.00 0.00 2.75
647 648 0.976641 TCAGTCAACCCAGCGATCTT 59.023 50.000 0.00 0.00 0.00 2.40
648 649 1.081892 CAGTCAACCCAGCGATCTTG 58.918 55.000 0.00 0.00 0.00 3.02
649 650 0.687354 AGTCAACCCAGCGATCTTGT 59.313 50.000 0.00 0.00 0.00 3.16
650 651 1.072331 AGTCAACCCAGCGATCTTGTT 59.928 47.619 0.00 0.00 0.00 2.83
651 652 1.880027 GTCAACCCAGCGATCTTGTTT 59.120 47.619 0.00 0.00 0.00 2.83
652 653 2.293399 GTCAACCCAGCGATCTTGTTTT 59.707 45.455 0.00 0.00 0.00 2.43
653 654 2.955660 TCAACCCAGCGATCTTGTTTTT 59.044 40.909 0.00 0.00 0.00 1.94
654 655 3.004315 TCAACCCAGCGATCTTGTTTTTC 59.996 43.478 0.00 0.00 0.00 2.29
655 656 2.863809 ACCCAGCGATCTTGTTTTTCT 58.136 42.857 0.00 0.00 0.00 2.52
656 657 2.554032 ACCCAGCGATCTTGTTTTTCTG 59.446 45.455 0.00 0.00 0.00 3.02
657 658 2.589014 CCAGCGATCTTGTTTTTCTGC 58.411 47.619 0.00 0.00 0.00 4.26
658 659 2.589014 CAGCGATCTTGTTTTTCTGCC 58.411 47.619 0.00 0.00 0.00 4.85
659 660 2.227388 CAGCGATCTTGTTTTTCTGCCT 59.773 45.455 0.00 0.00 0.00 4.75
660 661 2.887152 AGCGATCTTGTTTTTCTGCCTT 59.113 40.909 0.00 0.00 0.00 4.35
661 662 3.319122 AGCGATCTTGTTTTTCTGCCTTT 59.681 39.130 0.00 0.00 0.00 3.11
662 663 3.426525 GCGATCTTGTTTTTCTGCCTTTG 59.573 43.478 0.00 0.00 0.00 2.77
663 664 4.792704 GCGATCTTGTTTTTCTGCCTTTGA 60.793 41.667 0.00 0.00 0.00 2.69
664 665 5.280945 CGATCTTGTTTTTCTGCCTTTGAA 58.719 37.500 0.00 0.00 0.00 2.69
665 666 5.173854 CGATCTTGTTTTTCTGCCTTTGAAC 59.826 40.000 0.00 0.00 0.00 3.18
666 667 4.420168 TCTTGTTTTTCTGCCTTTGAACG 58.580 39.130 0.00 0.00 0.00 3.95
667 668 2.535331 TGTTTTTCTGCCTTTGAACGC 58.465 42.857 0.00 0.00 0.00 4.84
668 669 2.094494 TGTTTTTCTGCCTTTGAACGCA 60.094 40.909 0.00 0.00 0.00 5.24
669 670 2.926838 GTTTTTCTGCCTTTGAACGCAA 59.073 40.909 0.00 0.00 33.87 4.85
670 671 2.949451 TTTCTGCCTTTGAACGCAAA 57.051 40.000 0.00 0.00 41.47 3.68
671 672 3.451141 TTTCTGCCTTTGAACGCAAAT 57.549 38.095 0.00 0.00 42.66 2.32
672 673 2.704725 TCTGCCTTTGAACGCAAATC 57.295 45.000 0.00 0.00 42.66 2.17
673 674 1.269448 TCTGCCTTTGAACGCAAATCC 59.731 47.619 0.00 0.00 42.66 3.01
674 675 1.000385 CTGCCTTTGAACGCAAATCCA 60.000 47.619 0.00 0.00 42.66 3.41
675 676 1.410517 TGCCTTTGAACGCAAATCCAA 59.589 42.857 0.00 0.00 42.66 3.53
676 677 1.792367 GCCTTTGAACGCAAATCCAAC 59.208 47.619 0.00 0.00 42.66 3.77
677 678 2.801342 GCCTTTGAACGCAAATCCAACA 60.801 45.455 0.00 0.00 42.66 3.33
678 679 3.452474 CCTTTGAACGCAAATCCAACAA 58.548 40.909 0.00 0.00 42.66 2.83
679 680 3.490526 CCTTTGAACGCAAATCCAACAAG 59.509 43.478 0.00 0.00 42.66 3.16
680 681 4.358851 CTTTGAACGCAAATCCAACAAGA 58.641 39.130 0.00 0.00 42.66 3.02
681 682 4.377839 TTGAACGCAAATCCAACAAGAA 57.622 36.364 0.00 0.00 0.00 2.52
696 697 5.639082 CCAACAAGAAATATTTTCAGGCACC 59.361 40.000 1.43 0.00 0.00 5.01
740 741 7.758495 TGAATAGATTAAAAGTTTTCCTCGCC 58.242 34.615 3.60 0.00 0.00 5.54
773 781 7.234355 AGAAGGAAAAGAAAAGCAGGAATAGA 58.766 34.615 0.00 0.00 0.00 1.98
787 795 6.708054 AGCAGGAATAGATCGAATTTACAAGG 59.292 38.462 0.00 0.00 0.00 3.61
796 804 2.908626 CGAATTTACAAGGAAGCAACGC 59.091 45.455 0.00 0.00 0.00 4.84
1103 1111 3.009473 ACTTTCAGGAAGAAGCATAGCCA 59.991 43.478 0.00 0.00 38.77 4.75
2054 2086 1.677637 CTCCTGGTAGAAGGGCCGAC 61.678 65.000 0.00 0.00 37.96 4.79
2148 2180 4.124351 TCGGACGTCGTCATGGCC 62.124 66.667 25.64 8.74 40.32 5.36
2151 2183 2.509336 GACGTCGTCATGGCCCTG 60.509 66.667 20.28 0.00 32.09 4.45
2252 2287 5.593010 TGGCTAACATTGTGTGGTTTTTAC 58.407 37.500 0.00 0.00 0.00 2.01
2306 2341 7.565450 TGCGTCTTGACAAAATGAAATAATG 57.435 32.000 1.59 0.00 0.00 1.90
2311 2346 9.993881 GTCTTGACAAAATGAAATAATGAAACG 57.006 29.630 0.00 0.00 0.00 3.60
2320 2355 6.613153 TGAAATAATGAAACGGGGGATTTT 57.387 33.333 0.00 0.00 0.00 1.82
2327 2362 0.898326 AACGGGGGATTTTGGCTCAC 60.898 55.000 0.00 0.00 0.00 3.51
2360 2395 3.056304 CAAACCTTGCAAAATACCACCG 58.944 45.455 0.00 0.00 0.00 4.94
2361 2396 0.601057 ACCTTGCAAAATACCACCGC 59.399 50.000 0.00 0.00 0.00 5.68
2362 2397 0.887933 CCTTGCAAAATACCACCGCT 59.112 50.000 0.00 0.00 0.00 5.52
2363 2398 2.088423 CCTTGCAAAATACCACCGCTA 58.912 47.619 0.00 0.00 0.00 4.26
2364 2399 2.490115 CCTTGCAAAATACCACCGCTAA 59.510 45.455 0.00 0.00 0.00 3.09
2365 2400 3.057174 CCTTGCAAAATACCACCGCTAAA 60.057 43.478 0.00 0.00 0.00 1.85
2366 2401 4.381505 CCTTGCAAAATACCACCGCTAAAT 60.382 41.667 0.00 0.00 0.00 1.40
2400 2435 6.043706 CCATGAATTTCCTACATACTCCCTCT 59.956 42.308 0.00 0.00 0.00 3.69
2419 2454 5.482175 CCCTCTGGTCCGAAATATAAGATCT 59.518 44.000 0.00 0.00 0.00 2.75
2733 2770 2.567169 GCTTTGCACCCTTCCCTAAATT 59.433 45.455 0.00 0.00 0.00 1.82
2734 2771 3.368427 GCTTTGCACCCTTCCCTAAATTC 60.368 47.826 0.00 0.00 0.00 2.17
2735 2772 3.825908 TTGCACCCTTCCCTAAATTCT 57.174 42.857 0.00 0.00 0.00 2.40
2919 2958 2.941210 GAACCATTCCACCAAGCGA 58.059 52.632 0.00 0.00 0.00 4.93
3040 3080 2.197605 TCGAACTGACCGTGGCTGA 61.198 57.895 0.00 0.00 0.00 4.26
3069 3109 0.107459 GAGGAAGTGCCACCAGATCC 60.107 60.000 0.00 0.00 40.02 3.36
3125 3165 1.134431 TGAGAACTGAAGCTGCACACA 60.134 47.619 1.02 0.00 0.00 3.72
3147 3187 7.040409 ACACAAGGAATCAAATGTTAGACCTTC 60.040 37.037 0.00 0.00 34.83 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 7.290014 AGAGGGAATTAAAACATTGGTTCTTGT 59.710 33.333 0.00 0.00 35.82 3.16
64 65 7.855784 AGAGGGAATTAAAACATTGGTTCTT 57.144 32.000 0.00 0.00 35.82 2.52
69 70 7.819415 GGAGAAAAGAGGGAATTAAAACATTGG 59.181 37.037 0.00 0.00 0.00 3.16
114 115 2.378445 TGCACACGCATACACTGTAT 57.622 45.000 0.00 0.00 45.36 2.29
145 146 7.321530 AGGTCTTATATTAGGGAATGGAAGGA 58.678 38.462 0.00 0.00 0.00 3.36
146 147 7.575499 AGGTCTTATATTAGGGAATGGAAGG 57.425 40.000 0.00 0.00 0.00 3.46
147 148 9.868160 AAAAGGTCTTATATTAGGGAATGGAAG 57.132 33.333 0.00 0.00 0.00 3.46
150 151 9.232473 GCTAAAAGGTCTTATATTAGGGAATGG 57.768 37.037 0.00 0.00 0.00 3.16
189 190 9.563898 CACTCATTTTAGTACGTATGTAGTCAA 57.436 33.333 5.69 0.00 35.79 3.18
190 191 8.949177 TCACTCATTTTAGTACGTATGTAGTCA 58.051 33.333 5.69 0.00 35.79 3.41
191 192 9.778993 TTCACTCATTTTAGTACGTATGTAGTC 57.221 33.333 5.69 0.00 35.79 2.59
192 193 9.565213 GTTCACTCATTTTAGTACGTATGTAGT 57.435 33.333 7.58 7.58 37.90 2.73
193 194 9.563898 TGTTCACTCATTTTAGTACGTATGTAG 57.436 33.333 0.00 0.00 0.00 2.74
195 196 8.997621 ATGTTCACTCATTTTAGTACGTATGT 57.002 30.769 0.00 0.00 0.00 2.29
199 200 8.869897 CATGTATGTTCACTCATTTTAGTACGT 58.130 33.333 0.00 0.00 0.00 3.57
200 201 7.846107 GCATGTATGTTCACTCATTTTAGTACG 59.154 37.037 0.00 0.00 0.00 3.67
201 202 8.122952 GGCATGTATGTTCACTCATTTTAGTAC 58.877 37.037 0.00 0.00 0.00 2.73
202 203 7.826744 TGGCATGTATGTTCACTCATTTTAGTA 59.173 33.333 0.00 0.00 0.00 1.82
203 204 6.658816 TGGCATGTATGTTCACTCATTTTAGT 59.341 34.615 0.00 0.00 0.00 2.24
204 205 7.087409 TGGCATGTATGTTCACTCATTTTAG 57.913 36.000 0.00 0.00 0.00 1.85
205 206 7.459795 TTGGCATGTATGTTCACTCATTTTA 57.540 32.000 0.00 0.00 0.00 1.52
206 207 5.981088 TGGCATGTATGTTCACTCATTTT 57.019 34.783 0.00 0.00 0.00 1.82
207 208 5.981088 TTGGCATGTATGTTCACTCATTT 57.019 34.783 0.00 0.00 0.00 2.32
208 209 5.981088 TTTGGCATGTATGTTCACTCATT 57.019 34.783 0.00 0.00 0.00 2.57
209 210 5.981088 TTTTGGCATGTATGTTCACTCAT 57.019 34.783 0.00 0.00 0.00 2.90
210 211 5.243507 ACATTTTGGCATGTATGTTCACTCA 59.756 36.000 0.00 0.00 35.51 3.41
211 212 5.574055 CACATTTTGGCATGTATGTTCACTC 59.426 40.000 6.84 0.00 35.51 3.51
212 213 5.010922 ACACATTTTGGCATGTATGTTCACT 59.989 36.000 6.84 0.00 35.51 3.41
213 214 5.229423 ACACATTTTGGCATGTATGTTCAC 58.771 37.500 6.84 0.00 35.51 3.18
214 215 5.243507 AGACACATTTTGGCATGTATGTTCA 59.756 36.000 6.84 0.00 35.51 3.18
215 216 5.574055 CAGACACATTTTGGCATGTATGTTC 59.426 40.000 4.98 7.45 35.51 3.18
216 217 5.243507 TCAGACACATTTTGGCATGTATGTT 59.756 36.000 11.27 3.51 35.51 2.71
217 218 4.766373 TCAGACACATTTTGGCATGTATGT 59.234 37.500 11.27 7.88 35.51 2.29
218 219 5.313520 TCAGACACATTTTGGCATGTATG 57.686 39.130 6.49 6.49 35.51 2.39
219 220 5.981088 TTCAGACACATTTTGGCATGTAT 57.019 34.783 0.00 0.00 35.51 2.29
220 221 5.981088 ATTCAGACACATTTTGGCATGTA 57.019 34.783 0.00 0.00 35.51 2.29
221 222 4.877378 ATTCAGACACATTTTGGCATGT 57.123 36.364 0.00 0.00 37.93 3.21
222 223 6.334989 ACATATTCAGACACATTTTGGCATG 58.665 36.000 0.00 0.00 34.40 4.06
223 224 6.534475 ACATATTCAGACACATTTTGGCAT 57.466 33.333 0.00 0.00 34.40 4.40
224 225 5.981088 ACATATTCAGACACATTTTGGCA 57.019 34.783 0.00 0.00 34.40 4.92
225 226 7.706159 TCATACATATTCAGACACATTTTGGC 58.294 34.615 0.00 0.00 0.00 4.52
232 233 9.889128 TTCTTGATTCATACATATTCAGACACA 57.111 29.630 0.00 0.00 0.00 3.72
266 267 8.389366 CCTCCATTCCCTCATATAAGATCTTTT 58.611 37.037 14.36 8.54 0.00 2.27
267 268 7.037008 CCCTCCATTCCCTCATATAAGATCTTT 60.037 40.741 14.36 4.45 0.00 2.52
268 269 6.446434 CCCTCCATTCCCTCATATAAGATCTT 59.554 42.308 13.56 13.56 0.00 2.40
269 270 5.969402 CCCTCCATTCCCTCATATAAGATCT 59.031 44.000 0.00 0.00 0.00 2.75
270 271 5.966935 TCCCTCCATTCCCTCATATAAGATC 59.033 44.000 0.00 0.00 0.00 2.75
271 272 5.932238 TCCCTCCATTCCCTCATATAAGAT 58.068 41.667 0.00 0.00 0.00 2.40
272 273 5.162715 ACTCCCTCCATTCCCTCATATAAGA 60.163 44.000 0.00 0.00 0.00 2.10
273 274 5.097234 ACTCCCTCCATTCCCTCATATAAG 58.903 45.833 0.00 0.00 0.00 1.73
274 275 5.106631 ACTCCCTCCATTCCCTCATATAA 57.893 43.478 0.00 0.00 0.00 0.98
275 276 4.785173 ACTCCCTCCATTCCCTCATATA 57.215 45.455 0.00 0.00 0.00 0.86
276 277 3.663298 ACTCCCTCCATTCCCTCATAT 57.337 47.619 0.00 0.00 0.00 1.78
277 278 3.471306 AGTACTCCCTCCATTCCCTCATA 59.529 47.826 0.00 0.00 0.00 2.15
278 279 2.251338 AGTACTCCCTCCATTCCCTCAT 59.749 50.000 0.00 0.00 0.00 2.90
279 280 1.651770 AGTACTCCCTCCATTCCCTCA 59.348 52.381 0.00 0.00 0.00 3.86
280 281 2.436173 CAAGTACTCCCTCCATTCCCTC 59.564 54.545 0.00 0.00 0.00 4.30
281 282 2.225908 ACAAGTACTCCCTCCATTCCCT 60.226 50.000 0.00 0.00 0.00 4.20
282 283 2.197465 ACAAGTACTCCCTCCATTCCC 58.803 52.381 0.00 0.00 0.00 3.97
283 284 4.679905 CGTAACAAGTACTCCCTCCATTCC 60.680 50.000 0.00 0.00 0.00 3.01
284 285 4.159135 TCGTAACAAGTACTCCCTCCATTC 59.841 45.833 0.00 0.00 0.00 2.67
285 286 4.091549 TCGTAACAAGTACTCCCTCCATT 58.908 43.478 0.00 0.00 0.00 3.16
286 287 3.705051 TCGTAACAAGTACTCCCTCCAT 58.295 45.455 0.00 0.00 0.00 3.41
287 288 3.159213 TCGTAACAAGTACTCCCTCCA 57.841 47.619 0.00 0.00 0.00 3.86
288 289 4.525912 TTTCGTAACAAGTACTCCCTCC 57.474 45.455 0.00 0.00 0.00 4.30
289 290 5.536260 ACTTTTCGTAACAAGTACTCCCTC 58.464 41.667 0.00 0.00 31.20 4.30
290 291 5.541953 ACTTTTCGTAACAAGTACTCCCT 57.458 39.130 0.00 0.00 31.20 4.20
291 292 6.609237 AAACTTTTCGTAACAAGTACTCCC 57.391 37.500 0.00 0.00 32.74 4.30
292 293 8.603181 TGTAAAACTTTTCGTAACAAGTACTCC 58.397 33.333 0.00 0.00 32.74 3.85
297 298 9.281075 GTGAATGTAAAACTTTTCGTAACAAGT 57.719 29.630 0.00 0.00 34.58 3.16
298 299 9.279904 TGTGAATGTAAAACTTTTCGTAACAAG 57.720 29.630 0.00 0.00 0.00 3.16
305 306 6.746104 TGCATGTGAATGTAAAACTTTTCG 57.254 33.333 0.00 0.00 0.00 3.46
373 374 5.715753 GGAACGGAGGGAGTATATGTTATCT 59.284 44.000 0.00 0.00 0.00 1.98
379 380 4.682778 TTTGGAACGGAGGGAGTATATG 57.317 45.455 0.00 0.00 0.00 1.78
382 383 4.720273 AGTAATTTGGAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
383 384 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
384 385 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
385 386 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
386 387 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
387 388 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
388 389 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
389 390 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
390 391 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
391 392 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
392 393 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
393 394 2.991190 TCAGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
394 395 3.306917 TCAGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
395 396 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
396 397 4.334443 CATTTCAGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
397 398 4.092821 TCCATTTCAGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
398 399 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
399 400 3.857052 TCCATTTCAGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
400 401 3.520290 TCCATTTCAGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
401 402 3.186909 CATCCATTTCAGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
402 403 2.165641 ACATCCATTTCAGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
403 404 1.066858 ACATCCATTTCAGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
404 405 1.590238 GACATCCATTTCAGCGACGAG 59.410 52.381 0.00 0.00 0.00 4.18
405 406 1.204704 AGACATCCATTTCAGCGACGA 59.795 47.619 0.00 0.00 0.00 4.20
406 407 1.590238 GAGACATCCATTTCAGCGACG 59.410 52.381 0.00 0.00 0.00 5.12
407 408 2.898705 AGAGACATCCATTTCAGCGAC 58.101 47.619 0.00 0.00 0.00 5.19
408 409 3.954258 TCTAGAGACATCCATTTCAGCGA 59.046 43.478 0.00 0.00 0.00 4.93
409 410 4.313277 TCTAGAGACATCCATTTCAGCG 57.687 45.455 0.00 0.00 0.00 5.18
410 411 8.668510 TTAATTCTAGAGACATCCATTTCAGC 57.331 34.615 0.00 0.00 0.00 4.26
449 450 9.645059 CGAATTACTTGTCTCATATATGGATGT 57.355 33.333 12.78 10.77 0.00 3.06
450 451 9.091784 CCGAATTACTTGTCTCATATATGGATG 57.908 37.037 12.78 4.30 0.00 3.51
451 452 9.035890 TCCGAATTACTTGTCTCATATATGGAT 57.964 33.333 12.78 0.00 0.00 3.41
452 453 8.417273 TCCGAATTACTTGTCTCATATATGGA 57.583 34.615 12.78 6.37 0.00 3.41
453 454 8.926710 GTTCCGAATTACTTGTCTCATATATGG 58.073 37.037 12.78 4.14 0.00 2.74
454 455 8.639428 CGTTCCGAATTACTTGTCTCATATATG 58.361 37.037 6.36 6.36 0.00 1.78
455 456 7.813148 CCGTTCCGAATTACTTGTCTCATATAT 59.187 37.037 0.00 0.00 0.00 0.86
456 457 7.013559 TCCGTTCCGAATTACTTGTCTCATATA 59.986 37.037 0.00 0.00 0.00 0.86
457 458 5.983720 CCGTTCCGAATTACTTGTCTCATAT 59.016 40.000 0.00 0.00 0.00 1.78
458 459 5.125900 TCCGTTCCGAATTACTTGTCTCATA 59.874 40.000 0.00 0.00 0.00 2.15
459 460 4.081862 TCCGTTCCGAATTACTTGTCTCAT 60.082 41.667 0.00 0.00 0.00 2.90
460 461 3.256383 TCCGTTCCGAATTACTTGTCTCA 59.744 43.478 0.00 0.00 0.00 3.27
461 462 3.841643 TCCGTTCCGAATTACTTGTCTC 58.158 45.455 0.00 0.00 0.00 3.36
462 463 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
463 464 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
464 465 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
465 466 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
466 467 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
467 468 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
468 469 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
469 470 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
470 471 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
471 472 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
472 473 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
473 474 0.038744 AAGTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
474 475 1.403323 GTAAGTACTCCCTCCGTTCCG 59.597 57.143 0.00 0.00 0.00 4.30
475 476 2.732763 AGTAAGTACTCCCTCCGTTCC 58.267 52.381 0.00 0.00 0.00 3.62
476 477 4.522114 ACTAGTAAGTACTCCCTCCGTTC 58.478 47.826 0.00 0.00 37.73 3.95
477 478 4.582973 ACTAGTAAGTACTCCCTCCGTT 57.417 45.455 0.00 0.00 37.73 4.44
495 496 9.471702 GGGCATCAACCTATAATACTAGTACTA 57.528 37.037 4.31 1.89 0.00 1.82
496 497 7.399478 GGGGCATCAACCTATAATACTAGTACT 59.601 40.741 4.31 0.00 0.00 2.73
497 498 7.179694 TGGGGCATCAACCTATAATACTAGTAC 59.820 40.741 4.31 0.00 0.00 2.73
498 499 7.250454 TGGGGCATCAACCTATAATACTAGTA 58.750 38.462 4.77 4.77 0.00 1.82
499 500 6.088819 TGGGGCATCAACCTATAATACTAGT 58.911 40.000 0.00 0.00 0.00 2.57
500 501 6.620877 TGGGGCATCAACCTATAATACTAG 57.379 41.667 0.00 0.00 0.00 2.57
501 502 7.904564 AGTATGGGGCATCAACCTATAATACTA 59.095 37.037 0.00 0.00 33.90 1.82
502 503 6.735704 AGTATGGGGCATCAACCTATAATACT 59.264 38.462 0.00 0.00 33.90 2.12
503 504 6.958767 AGTATGGGGCATCAACCTATAATAC 58.041 40.000 0.00 0.00 33.90 1.89
504 505 6.127168 CGAGTATGGGGCATCAACCTATAATA 60.127 42.308 0.00 0.00 33.90 0.98
505 506 5.338381 CGAGTATGGGGCATCAACCTATAAT 60.338 44.000 0.00 0.00 33.90 1.28
506 507 4.020573 CGAGTATGGGGCATCAACCTATAA 60.021 45.833 0.00 0.00 33.90 0.98
507 508 3.513912 CGAGTATGGGGCATCAACCTATA 59.486 47.826 0.00 0.00 31.17 1.31
508 509 2.303022 CGAGTATGGGGCATCAACCTAT 59.697 50.000 0.00 0.00 33.44 2.57
509 510 1.691976 CGAGTATGGGGCATCAACCTA 59.308 52.381 0.00 0.00 0.00 3.08
510 511 0.469917 CGAGTATGGGGCATCAACCT 59.530 55.000 0.00 0.00 0.00 3.50
511 512 0.535102 CCGAGTATGGGGCATCAACC 60.535 60.000 0.00 0.00 0.00 3.77
512 513 0.180406 ACCGAGTATGGGGCATCAAC 59.820 55.000 0.00 0.00 38.89 3.18
513 514 0.916086 AACCGAGTATGGGGCATCAA 59.084 50.000 0.00 0.00 38.89 2.57
514 515 1.796017 TAACCGAGTATGGGGCATCA 58.204 50.000 0.00 0.00 38.89 3.07
515 516 2.922740 TTAACCGAGTATGGGGCATC 57.077 50.000 0.00 0.00 38.89 3.91
516 517 3.876309 ATTTAACCGAGTATGGGGCAT 57.124 42.857 0.00 0.00 38.89 4.40
517 518 3.655615 AATTTAACCGAGTATGGGGCA 57.344 42.857 0.00 0.00 38.89 5.36
518 519 6.040054 ACAATAAATTTAACCGAGTATGGGGC 59.960 38.462 1.21 0.00 38.89 5.80
519 520 7.283580 TGACAATAAATTTAACCGAGTATGGGG 59.716 37.037 1.21 0.00 38.89 4.96
520 521 8.215926 TGACAATAAATTTAACCGAGTATGGG 57.784 34.615 1.21 0.00 41.29 4.00
541 542 9.814899 TGAGCTTTTCAAGATTTAAATTTGACA 57.185 25.926 17.73 12.57 31.34 3.58
543 544 9.480053 CCTGAGCTTTTCAAGATTTAAATTTGA 57.520 29.630 15.67 15.67 34.81 2.69
544 545 8.225777 GCCTGAGCTTTTCAAGATTTAAATTTG 58.774 33.333 1.43 8.90 34.81 2.32
545 546 7.116805 CGCCTGAGCTTTTCAAGATTTAAATTT 59.883 33.333 1.43 0.00 34.81 1.82
546 547 6.587608 CGCCTGAGCTTTTCAAGATTTAAATT 59.412 34.615 1.43 0.00 34.81 1.82
547 548 6.095377 CGCCTGAGCTTTTCAAGATTTAAAT 58.905 36.000 0.00 0.00 34.81 1.40
548 549 5.460646 CGCCTGAGCTTTTCAAGATTTAAA 58.539 37.500 0.00 0.00 34.81 1.52
549 550 4.615912 GCGCCTGAGCTTTTCAAGATTTAA 60.616 41.667 0.00 0.00 34.81 1.52
550 551 3.119849 GCGCCTGAGCTTTTCAAGATTTA 60.120 43.478 0.00 0.00 34.81 1.40
551 552 2.352127 GCGCCTGAGCTTTTCAAGATTT 60.352 45.455 0.00 0.00 34.81 2.17
552 553 1.200948 GCGCCTGAGCTTTTCAAGATT 59.799 47.619 0.00 0.00 34.81 2.40
553 554 0.807496 GCGCCTGAGCTTTTCAAGAT 59.193 50.000 0.00 0.00 34.81 2.40
554 555 0.534877 TGCGCCTGAGCTTTTCAAGA 60.535 50.000 4.18 0.00 34.81 3.02
555 556 0.524862 ATGCGCCTGAGCTTTTCAAG 59.475 50.000 4.18 0.00 34.81 3.02
556 557 0.961019 AATGCGCCTGAGCTTTTCAA 59.039 45.000 4.18 0.00 34.81 2.69
557 558 1.468520 GTAATGCGCCTGAGCTTTTCA 59.531 47.619 4.18 0.00 36.22 2.69
558 559 1.468520 TGTAATGCGCCTGAGCTTTTC 59.531 47.619 4.18 0.00 36.22 2.29
559 560 1.533625 TGTAATGCGCCTGAGCTTTT 58.466 45.000 4.18 0.00 36.22 2.27
560 561 1.755179 ATGTAATGCGCCTGAGCTTT 58.245 45.000 4.18 0.00 38.00 3.51
561 562 1.402968 CAATGTAATGCGCCTGAGCTT 59.597 47.619 4.18 0.00 38.13 3.74
562 563 1.019673 CAATGTAATGCGCCTGAGCT 58.980 50.000 4.18 0.00 38.13 4.09
563 564 0.593263 GCAATGTAATGCGCCTGAGC 60.593 55.000 4.18 0.00 36.45 4.26
564 565 3.539253 GCAATGTAATGCGCCTGAG 57.461 52.632 4.18 0.00 36.45 3.35
571 572 2.440501 CTCCGTTTCGCAATGTAATGC 58.559 47.619 0.00 0.00 42.94 3.56
572 573 2.223249 CCCTCCGTTTCGCAATGTAATG 60.223 50.000 0.00 0.00 0.00 1.90
573 574 2.014128 CCCTCCGTTTCGCAATGTAAT 58.986 47.619 0.00 0.00 0.00 1.89
574 575 1.002201 TCCCTCCGTTTCGCAATGTAA 59.998 47.619 0.00 0.00 0.00 2.41
575 576 0.609151 TCCCTCCGTTTCGCAATGTA 59.391 50.000 0.00 0.00 0.00 2.29
576 577 0.673644 CTCCCTCCGTTTCGCAATGT 60.674 55.000 0.00 0.00 0.00 2.71
577 578 0.673644 ACTCCCTCCGTTTCGCAATG 60.674 55.000 0.00 0.00 0.00 2.82
578 579 0.899720 TACTCCCTCCGTTTCGCAAT 59.100 50.000 0.00 0.00 0.00 3.56
579 580 0.037975 GTACTCCCTCCGTTTCGCAA 60.038 55.000 0.00 0.00 0.00 4.85
580 581 0.896940 AGTACTCCCTCCGTTTCGCA 60.897 55.000 0.00 0.00 0.00 5.10
581 582 0.245813 AAGTACTCCCTCCGTTTCGC 59.754 55.000 0.00 0.00 0.00 4.70
582 583 3.855689 TTAAGTACTCCCTCCGTTTCG 57.144 47.619 0.00 0.00 0.00 3.46
583 584 5.290400 CGATTTTAAGTACTCCCTCCGTTTC 59.710 44.000 0.00 0.00 0.00 2.78
584 585 5.047092 TCGATTTTAAGTACTCCCTCCGTTT 60.047 40.000 0.00 0.00 0.00 3.60
585 586 4.463891 TCGATTTTAAGTACTCCCTCCGTT 59.536 41.667 0.00 0.00 0.00 4.44
586 587 4.019174 TCGATTTTAAGTACTCCCTCCGT 58.981 43.478 0.00 0.00 0.00 4.69
587 588 4.097589 AGTCGATTTTAAGTACTCCCTCCG 59.902 45.833 0.00 0.00 0.00 4.63
588 589 5.349809 CAGTCGATTTTAAGTACTCCCTCC 58.650 45.833 0.00 0.00 0.00 4.30
589 590 5.126707 TCCAGTCGATTTTAAGTACTCCCTC 59.873 44.000 0.00 0.00 0.00 4.30
590 591 5.021458 TCCAGTCGATTTTAAGTACTCCCT 58.979 41.667 0.00 0.00 0.00 4.20
591 592 5.334724 TCCAGTCGATTTTAAGTACTCCC 57.665 43.478 0.00 0.00 0.00 4.30
592 593 5.811100 CCTTCCAGTCGATTTTAAGTACTCC 59.189 44.000 0.00 0.00 0.00 3.85
593 594 6.628185 TCCTTCCAGTCGATTTTAAGTACTC 58.372 40.000 0.00 0.00 0.00 2.59
594 595 6.436532 TCTCCTTCCAGTCGATTTTAAGTACT 59.563 38.462 0.00 0.00 0.00 2.73
595 596 6.628185 TCTCCTTCCAGTCGATTTTAAGTAC 58.372 40.000 0.00 0.00 0.00 2.73
596 597 6.845758 TCTCCTTCCAGTCGATTTTAAGTA 57.154 37.500 0.00 0.00 0.00 2.24
597 598 5.740290 TCTCCTTCCAGTCGATTTTAAGT 57.260 39.130 0.00 0.00 0.00 2.24
598 599 6.398918 TCTTCTCCTTCCAGTCGATTTTAAG 58.601 40.000 0.00 0.00 0.00 1.85
599 600 6.354794 TCTTCTCCTTCCAGTCGATTTTAA 57.645 37.500 0.00 0.00 0.00 1.52
600 601 5.995565 TCTTCTCCTTCCAGTCGATTTTA 57.004 39.130 0.00 0.00 0.00 1.52
601 602 4.891992 TCTTCTCCTTCCAGTCGATTTT 57.108 40.909 0.00 0.00 0.00 1.82
602 603 4.891992 TTCTTCTCCTTCCAGTCGATTT 57.108 40.909 0.00 0.00 0.00 2.17
603 604 4.467795 TGATTCTTCTCCTTCCAGTCGATT 59.532 41.667 0.00 0.00 0.00 3.34
604 605 4.026744 TGATTCTTCTCCTTCCAGTCGAT 58.973 43.478 0.00 0.00 0.00 3.59
605 606 3.431415 TGATTCTTCTCCTTCCAGTCGA 58.569 45.455 0.00 0.00 0.00 4.20
606 607 3.876274 TGATTCTTCTCCTTCCAGTCG 57.124 47.619 0.00 0.00 0.00 4.18
607 608 5.738909 TGAATGATTCTTCTCCTTCCAGTC 58.261 41.667 6.73 0.00 0.00 3.51
608 609 5.250313 ACTGAATGATTCTTCTCCTTCCAGT 59.750 40.000 6.73 0.00 0.00 4.00
609 610 5.743117 ACTGAATGATTCTTCTCCTTCCAG 58.257 41.667 6.73 0.00 0.00 3.86
610 611 5.249163 TGACTGAATGATTCTTCTCCTTCCA 59.751 40.000 6.73 0.00 0.00 3.53
611 612 5.738909 TGACTGAATGATTCTTCTCCTTCC 58.261 41.667 6.73 0.00 0.00 3.46
612 613 6.093357 GGTTGACTGAATGATTCTTCTCCTTC 59.907 42.308 6.73 0.00 0.00 3.46
613 614 5.942826 GGTTGACTGAATGATTCTTCTCCTT 59.057 40.000 6.73 0.00 0.00 3.36
614 615 5.495640 GGTTGACTGAATGATTCTTCTCCT 58.504 41.667 6.73 0.00 0.00 3.69
615 616 4.637977 GGGTTGACTGAATGATTCTTCTCC 59.362 45.833 6.73 9.14 0.00 3.71
616 617 5.248640 TGGGTTGACTGAATGATTCTTCTC 58.751 41.667 6.73 0.00 0.00 2.87
617 618 5.246981 TGGGTTGACTGAATGATTCTTCT 57.753 39.130 6.73 0.00 0.00 2.85
618 619 4.142513 GCTGGGTTGACTGAATGATTCTTC 60.143 45.833 6.73 3.90 0.00 2.87
619 620 3.760684 GCTGGGTTGACTGAATGATTCTT 59.239 43.478 6.73 0.00 0.00 2.52
620 621 3.350833 GCTGGGTTGACTGAATGATTCT 58.649 45.455 6.73 0.00 0.00 2.40
621 622 2.096496 CGCTGGGTTGACTGAATGATTC 59.904 50.000 0.00 0.00 0.00 2.52
622 623 2.086869 CGCTGGGTTGACTGAATGATT 58.913 47.619 0.00 0.00 0.00 2.57
623 624 1.278985 TCGCTGGGTTGACTGAATGAT 59.721 47.619 0.00 0.00 0.00 2.45
624 625 0.684535 TCGCTGGGTTGACTGAATGA 59.315 50.000 0.00 0.00 0.00 2.57
625 626 1.667724 GATCGCTGGGTTGACTGAATG 59.332 52.381 0.00 0.00 0.00 2.67
626 627 1.556911 AGATCGCTGGGTTGACTGAAT 59.443 47.619 0.00 0.00 0.00 2.57
627 628 0.976641 AGATCGCTGGGTTGACTGAA 59.023 50.000 0.00 0.00 0.00 3.02
628 629 0.976641 AAGATCGCTGGGTTGACTGA 59.023 50.000 0.00 0.00 0.00 3.41
629 630 1.081892 CAAGATCGCTGGGTTGACTG 58.918 55.000 0.00 0.00 0.00 3.51
630 631 0.687354 ACAAGATCGCTGGGTTGACT 59.313 50.000 3.34 0.00 0.00 3.41
631 632 1.523758 AACAAGATCGCTGGGTTGAC 58.476 50.000 3.34 0.00 0.00 3.18
632 633 2.270352 AAACAAGATCGCTGGGTTGA 57.730 45.000 3.34 0.00 0.00 3.18
633 634 3.004734 AGAAAAACAAGATCGCTGGGTTG 59.995 43.478 3.34 0.00 0.00 3.77
634 635 3.004734 CAGAAAAACAAGATCGCTGGGTT 59.995 43.478 3.34 0.00 0.00 4.11
635 636 2.554032 CAGAAAAACAAGATCGCTGGGT 59.446 45.455 3.34 0.00 0.00 4.51
636 637 2.669391 GCAGAAAAACAAGATCGCTGGG 60.669 50.000 0.00 0.00 0.00 4.45
637 638 2.589014 GCAGAAAAACAAGATCGCTGG 58.411 47.619 0.00 0.00 0.00 4.85
638 639 2.227388 AGGCAGAAAAACAAGATCGCTG 59.773 45.455 0.00 0.00 0.00 5.18
639 640 2.508526 AGGCAGAAAAACAAGATCGCT 58.491 42.857 0.00 0.00 0.00 4.93
640 641 2.997485 AGGCAGAAAAACAAGATCGC 57.003 45.000 0.00 0.00 0.00 4.58
641 642 4.858935 TCAAAGGCAGAAAAACAAGATCG 58.141 39.130 0.00 0.00 0.00 3.69
642 643 5.173854 CGTTCAAAGGCAGAAAAACAAGATC 59.826 40.000 0.00 0.00 0.00 2.75
643 644 5.043248 CGTTCAAAGGCAGAAAAACAAGAT 58.957 37.500 0.00 0.00 0.00 2.40
644 645 4.420168 CGTTCAAAGGCAGAAAAACAAGA 58.580 39.130 0.00 0.00 0.00 3.02
645 646 3.000222 GCGTTCAAAGGCAGAAAAACAAG 60.000 43.478 2.74 0.00 39.45 3.16
646 647 2.926838 GCGTTCAAAGGCAGAAAAACAA 59.073 40.909 2.74 0.00 39.45 2.83
647 648 2.094494 TGCGTTCAAAGGCAGAAAAACA 60.094 40.909 6.05 0.00 43.92 2.83
648 649 2.535331 TGCGTTCAAAGGCAGAAAAAC 58.465 42.857 6.05 0.00 43.92 2.43
649 650 2.949451 TGCGTTCAAAGGCAGAAAAA 57.051 40.000 6.05 0.00 43.92 1.94
655 656 1.035923 TGGATTTGCGTTCAAAGGCA 58.964 45.000 6.05 6.05 44.47 4.75
656 657 1.792367 GTTGGATTTGCGTTCAAAGGC 59.208 47.619 0.64 0.64 44.47 4.35
657 658 3.090952 TGTTGGATTTGCGTTCAAAGG 57.909 42.857 0.00 0.00 44.47 3.11
658 659 4.358851 TCTTGTTGGATTTGCGTTCAAAG 58.641 39.130 0.00 0.00 44.47 2.77
659 660 4.377839 TCTTGTTGGATTTGCGTTCAAA 57.622 36.364 0.00 0.00 45.24 2.69
660 661 4.377839 TTCTTGTTGGATTTGCGTTCAA 57.622 36.364 0.00 0.00 0.00 2.69
661 662 4.377839 TTTCTTGTTGGATTTGCGTTCA 57.622 36.364 0.00 0.00 0.00 3.18
662 663 7.581011 AATATTTCTTGTTGGATTTGCGTTC 57.419 32.000 0.00 0.00 0.00 3.95
663 664 7.961325 AAATATTTCTTGTTGGATTTGCGTT 57.039 28.000 0.00 0.00 0.00 4.84
664 665 7.655328 TGAAAATATTTCTTGTTGGATTTGCGT 59.345 29.630 0.10 0.00 0.00 5.24
665 666 8.016497 TGAAAATATTTCTTGTTGGATTTGCG 57.984 30.769 0.10 0.00 0.00 4.85
666 667 8.445493 CCTGAAAATATTTCTTGTTGGATTTGC 58.555 33.333 0.10 0.00 0.00 3.68
667 668 8.445493 GCCTGAAAATATTTCTTGTTGGATTTG 58.555 33.333 0.10 0.00 0.00 2.32
668 669 8.156165 TGCCTGAAAATATTTCTTGTTGGATTT 58.844 29.630 0.10 0.00 0.00 2.17
669 670 7.603784 GTGCCTGAAAATATTTCTTGTTGGATT 59.396 33.333 0.10 0.00 0.00 3.01
670 671 7.099120 GTGCCTGAAAATATTTCTTGTTGGAT 58.901 34.615 0.10 0.00 0.00 3.41
671 672 6.454795 GTGCCTGAAAATATTTCTTGTTGGA 58.545 36.000 0.10 0.00 0.00 3.53
672 673 5.639082 GGTGCCTGAAAATATTTCTTGTTGG 59.361 40.000 0.10 0.69 0.00 3.77
673 674 6.366877 CAGGTGCCTGAAAATATTTCTTGTTG 59.633 38.462 12.66 0.00 46.30 3.33
674 675 6.458210 CAGGTGCCTGAAAATATTTCTTGTT 58.542 36.000 12.66 0.00 46.30 2.83
675 676 6.029346 CAGGTGCCTGAAAATATTTCTTGT 57.971 37.500 12.66 0.00 46.30 3.16
696 697 4.198028 TCAGAGATCACCAATGTGTCAG 57.802 45.455 0.00 0.00 43.26 3.51
713 714 8.665685 GCGAGGAAAACTTTTAATCTATTCAGA 58.334 33.333 0.00 0.00 34.56 3.27
749 750 7.454260 TCTATTCCTGCTTTTCTTTTCCTTC 57.546 36.000 0.00 0.00 0.00 3.46
773 781 4.671766 GCGTTGCTTCCTTGTAAATTCGAT 60.672 41.667 0.00 0.00 0.00 3.59
1040 1048 0.749649 CTTCCTCTCCTCGTCCATGG 59.250 60.000 4.97 4.97 0.00 3.66
1596 1619 1.443407 CGCGATCCTCATCCTGGTT 59.557 57.895 0.00 0.00 0.00 3.67
1788 1820 1.682684 GTCCTTCTCCTCCTCCGCA 60.683 63.158 0.00 0.00 0.00 5.69
1875 1907 1.266175 CTGTACACGTCCGACTTCACT 59.734 52.381 0.00 0.00 0.00 3.41
2054 2086 2.747855 GCTTCAGTTCCCTGCCGG 60.748 66.667 0.00 0.00 38.66 6.13
2082 2114 4.054825 AAGCAAATGGCCGCCACG 62.055 61.111 16.16 7.62 46.50 4.94
2094 2126 1.376466 GTCCTCCTCCTGCAAGCAA 59.624 57.895 0.00 0.00 0.00 3.91
2163 2195 0.096628 CAGAGGGTAAGTCGTCGTCG 59.903 60.000 0.00 0.00 38.55 5.12
2164 2196 0.179169 GCAGAGGGTAAGTCGTCGTC 60.179 60.000 0.00 0.00 0.00 4.20
2165 2197 0.608582 AGCAGAGGGTAAGTCGTCGT 60.609 55.000 0.00 0.00 0.00 4.34
2252 2287 0.611618 TGTTAGCCAATGCCACCAGG 60.612 55.000 0.00 0.00 38.69 4.45
2306 2341 0.530744 GAGCCAAAATCCCCCGTTTC 59.469 55.000 0.00 0.00 0.00 2.78
2311 2346 1.571955 AATGTGAGCCAAAATCCCCC 58.428 50.000 0.00 0.00 0.00 5.40
2320 2355 0.874390 GCGACTTGAAATGTGAGCCA 59.126 50.000 0.00 0.00 0.00 4.75
2360 2395 9.196552 GGAAATTCATGGTATTTAGCATTTAGC 57.803 33.333 0.00 0.00 41.99 3.09
2364 2399 9.420118 TGTAGGAAATTCATGGTATTTAGCATT 57.580 29.630 0.00 0.00 41.99 3.56
2365 2400 8.995027 TGTAGGAAATTCATGGTATTTAGCAT 57.005 30.769 6.67 0.00 44.45 3.79
2366 2401 8.995027 ATGTAGGAAATTCATGGTATTTAGCA 57.005 30.769 6.67 0.00 38.16 3.49
2400 2435 9.982651 CTCTAAAAGATCTTATATTTCGGACCA 57.017 33.333 8.75 0.00 0.00 4.02
2440 2475 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2441 2476 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2526 2561 4.139786 TGTATGTATGTACTCCCTCCGTC 58.860 47.826 0.00 0.00 0.00 4.79
2703 2740 1.034292 GGGTGCAAAGCTCCTCCATC 61.034 60.000 9.61 0.00 41.35 3.51
2733 2770 3.239449 TCACTTTGGAGGCAGTAGAAGA 58.761 45.455 0.00 0.00 0.00 2.87
2734 2771 3.685139 TCACTTTGGAGGCAGTAGAAG 57.315 47.619 0.00 0.00 0.00 2.85
2735 2772 3.582647 TGATCACTTTGGAGGCAGTAGAA 59.417 43.478 0.00 0.00 0.00 2.10
2919 2958 1.171308 GGTGTGAGATGCATGCTGTT 58.829 50.000 20.33 3.46 0.00 3.16
2971 3011 4.386867 TTCTGATTAGCGTCCCTAGTTG 57.613 45.455 0.00 0.00 0.00 3.16
2977 3017 3.068873 AGTCAGATTCTGATTAGCGTCCC 59.931 47.826 18.89 3.70 42.73 4.46
3040 3080 0.394565 GCACTTCCTCACTGTCTGGT 59.605 55.000 0.00 0.00 0.00 4.00
3069 3109 1.361668 CGACGACTTTGCTGGGGATG 61.362 60.000 0.00 0.00 0.00 3.51
3125 3165 5.648092 CGGAAGGTCTAACATTTGATTCCTT 59.352 40.000 0.00 0.00 36.86 3.36
3147 3187 1.243342 TGCCTCTGCATTTTCACCGG 61.243 55.000 0.00 0.00 44.23 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.