Multiple sequence alignment - TraesCS4B01G135200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G135200 chr4B 100.000 3530 0 0 1 3530 176837644 176841173 0.000000e+00 6519.0
1 TraesCS4B01G135200 chr4B 93.556 450 25 4 3084 3530 273247504 273247952 0.000000e+00 667.0
2 TraesCS4B01G135200 chr4D 96.832 2178 50 9 534 2695 115544337 115542163 0.000000e+00 3622.0
3 TraesCS4B01G135200 chr4D 88.571 525 55 5 1 523 115545215 115544694 1.790000e-177 632.0
4 TraesCS4B01G135200 chr4D 85.352 355 20 14 2710 3058 115542184 115541856 4.360000e-89 339.0
5 TraesCS4B01G135200 chr4A 96.919 2077 61 3 621 2694 461353578 461355654 0.000000e+00 3478.0
6 TraesCS4B01G135200 chr4A 85.882 255 34 1 2193 2445 722868689 722868435 1.610000e-68 270.0
7 TraesCS4B01G135200 chr4A 91.525 59 3 2 3056 3112 16255637 16255695 2.920000e-11 80.5
8 TraesCS4B01G135200 chr5B 83.024 1508 223 18 1030 2525 233922294 233923780 0.000000e+00 1336.0
9 TraesCS4B01G135200 chr5B 93.593 437 24 4 3095 3530 280387539 280387972 0.000000e+00 649.0
10 TraesCS4B01G135200 chr5B 87.472 447 43 11 3089 3530 332300605 332301043 1.460000e-138 503.0
11 TraesCS4B01G135200 chr5B 96.154 52 1 1 3055 3105 556966753 556966702 2.260000e-12 84.2
12 TraesCS4B01G135200 chr5A 82.925 1511 219 21 1030 2525 290548009 290549495 0.000000e+00 1325.0
13 TraesCS4B01G135200 chr5D 82.859 1511 220 22 1030 2525 217755046 217756532 0.000000e+00 1319.0
14 TraesCS4B01G135200 chr5D 84.211 323 43 5 2207 2521 484260459 484260137 1.230000e-79 307.0
15 TraesCS4B01G135200 chr2D 82.193 1505 226 17 1030 2519 618532322 618530845 0.000000e+00 1256.0
16 TraesCS4B01G135200 chr2D 83.246 1331 183 20 1206 2525 618645451 618646752 0.000000e+00 1186.0
17 TraesCS4B01G135200 chr2A 82.792 1447 203 21 1090 2519 749448002 749446585 0.000000e+00 1251.0
18 TraesCS4B01G135200 chr2A 82.065 1511 229 18 1030 2525 749523752 749525235 0.000000e+00 1251.0
19 TraesCS4B01G135200 chr2A 94.353 425 22 2 3102 3525 692041849 692041426 0.000000e+00 651.0
20 TraesCS4B01G135200 chr2B 83.440 936 140 5 1030 1959 755054596 755055522 0.000000e+00 856.0
21 TraesCS4B01G135200 chr2B 91.741 448 32 5 3085 3530 750057095 750056651 5.010000e-173 617.0
22 TraesCS4B01G135200 chr2B 91.874 443 32 3 3089 3530 448586263 448586702 1.800000e-172 616.0
23 TraesCS4B01G135200 chr2B 92.396 434 28 3 3098 3530 488045884 488045455 6.480000e-172 614.0
24 TraesCS4B01G135200 chr2B 90.164 61 5 1 3053 3112 769099146 769099086 1.050000e-10 78.7
25 TraesCS4B01G135200 chr3A 94.432 431 20 3 3101 3530 365815152 365814725 0.000000e+00 660.0
26 TraesCS4B01G135200 chr3A 91.667 60 2 3 3056 3114 435363057 435363000 2.920000e-11 80.5
27 TraesCS4B01G135200 chr1B 94.537 421 22 1 3110 3530 6430210 6429791 0.000000e+00 649.0
28 TraesCS4B01G135200 chr3B 94.131 426 23 2 3107 3530 165783543 165783968 0.000000e+00 647.0
29 TraesCS4B01G135200 chr3B 92.982 57 4 0 3056 3112 766026081 766026025 2.260000e-12 84.2
30 TraesCS4B01G135200 chr1A 88.915 433 39 8 3096 3526 278373268 278372843 3.120000e-145 525.0
31 TraesCS4B01G135200 chr7D 88.389 422 45 4 3109 3530 615864280 615863863 4.070000e-139 505.0
32 TraesCS4B01G135200 chr7D 91.525 59 4 1 3055 3112 227298050 227298108 2.920000e-11 80.5
33 TraesCS4B01G135200 chr3D 85.941 441 54 6 3088 3528 11979682 11979250 6.900000e-127 464.0
34 TraesCS4B01G135200 chr6A 96.078 51 1 1 3056 3105 89297886 89297936 8.120000e-12 82.4
35 TraesCS4B01G135200 chr1D 92.982 57 3 1 3057 3112 413772735 413772791 8.120000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G135200 chr4B 176837644 176841173 3529 False 6519 6519 100.000000 1 3530 1 chr4B.!!$F1 3529
1 TraesCS4B01G135200 chr4D 115541856 115545215 3359 True 1531 3622 90.251667 1 3058 3 chr4D.!!$R1 3057
2 TraesCS4B01G135200 chr4A 461353578 461355654 2076 False 3478 3478 96.919000 621 2694 1 chr4A.!!$F2 2073
3 TraesCS4B01G135200 chr5B 233922294 233923780 1486 False 1336 1336 83.024000 1030 2525 1 chr5B.!!$F1 1495
4 TraesCS4B01G135200 chr5A 290548009 290549495 1486 False 1325 1325 82.925000 1030 2525 1 chr5A.!!$F1 1495
5 TraesCS4B01G135200 chr5D 217755046 217756532 1486 False 1319 1319 82.859000 1030 2525 1 chr5D.!!$F1 1495
6 TraesCS4B01G135200 chr2D 618530845 618532322 1477 True 1256 1256 82.193000 1030 2519 1 chr2D.!!$R1 1489
7 TraesCS4B01G135200 chr2D 618645451 618646752 1301 False 1186 1186 83.246000 1206 2525 1 chr2D.!!$F1 1319
8 TraesCS4B01G135200 chr2A 749446585 749448002 1417 True 1251 1251 82.792000 1090 2519 1 chr2A.!!$R2 1429
9 TraesCS4B01G135200 chr2A 749523752 749525235 1483 False 1251 1251 82.065000 1030 2525 1 chr2A.!!$F1 1495
10 TraesCS4B01G135200 chr2B 755054596 755055522 926 False 856 856 83.440000 1030 1959 1 chr2B.!!$F2 929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
727 1077 0.179004 TCATGGGTTCGGTGCTGTTT 60.179 50.0 0.0 0.0 0.0 2.83 F
2047 2412 0.108615 CGGCGAGAAGACAAGGACAT 60.109 55.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 2495 0.464036 ACTTGGAGTCGAACTGCACA 59.536 50.0 8.31 2.0 46.28 4.57 R
3346 3730 0.040058 ATCATGGCAACTTCTGGGCA 59.960 50.0 0.00 0.0 44.07 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.945354 ATCCGACCGACGACATTGCT 61.945 55.000 0.00 0.00 45.77 3.91
95 96 1.213094 CGACACCACAACCGAGACAC 61.213 60.000 0.00 0.00 0.00 3.67
108 109 2.613977 CCGAGACACTCAAGGAAAGCAT 60.614 50.000 0.00 0.00 0.00 3.79
115 116 3.058293 CACTCAAGGAAAGCATAACGCAA 60.058 43.478 0.00 0.00 46.13 4.85
132 133 2.270257 AAAGGCTTGCATCAGCGCA 61.270 52.632 11.47 0.00 46.23 6.09
147 148 2.753029 GCAGACAAGCCAGTCCCT 59.247 61.111 2.77 0.00 39.34 4.20
161 162 4.796231 CCCTGAACCCGCGAGTCG 62.796 72.222 8.23 8.54 38.08 4.18
162 163 3.744719 CCTGAACCCGCGAGTCGA 61.745 66.667 18.61 0.00 41.67 4.20
176 177 3.052082 TCGACGGACGTCCTCCAC 61.052 66.667 30.92 17.51 41.76 4.02
185 186 3.289525 GTCCTCCACGACCTCTGG 58.710 66.667 0.00 0.00 0.00 3.86
186 187 1.606889 GTCCTCCACGACCTCTGGT 60.607 63.158 0.00 0.00 39.44 4.00
206 208 1.067060 TCTGAACTATGTCGCCCATCG 59.933 52.381 0.00 0.00 34.86 3.84
209 211 0.530650 AACTATGTCGCCCATCGCAG 60.531 55.000 0.00 0.00 37.30 5.18
242 244 0.321671 CGACAACCTGGATCACACCT 59.678 55.000 0.00 0.00 0.00 4.00
250 252 2.125106 GATCACACCTCCGCCACC 60.125 66.667 0.00 0.00 0.00 4.61
276 278 2.855514 CGCCACCCAAACCAACCTG 61.856 63.158 0.00 0.00 0.00 4.00
277 279 3.137687 CCACCCAAACCAACCTGC 58.862 61.111 0.00 0.00 0.00 4.85
281 283 3.302344 CCAAACCAACCTGCCCGG 61.302 66.667 0.00 0.00 39.35 5.73
309 311 0.630673 CCATTCCTGTCATCCCCCAA 59.369 55.000 0.00 0.00 0.00 4.12
340 342 1.005215 CCAGATCTGGGCAAGGAAACT 59.995 52.381 31.14 0.00 46.81 2.66
346 348 2.505819 TCTGGGCAAGGAAACTAGATCC 59.494 50.000 10.26 10.26 42.68 3.36
348 350 1.300481 GGCAAGGAAACTAGATCCGC 58.700 55.000 11.84 10.42 42.68 5.54
349 351 1.300481 GCAAGGAAACTAGATCCGCC 58.700 55.000 11.84 0.00 42.68 6.13
351 353 1.134788 CAAGGAAACTAGATCCGCCGT 60.135 52.381 11.84 0.00 42.68 5.68
352 354 0.460311 AGGAAACTAGATCCGCCGTG 59.540 55.000 11.84 0.00 42.03 4.94
373 375 1.575419 TGTCGGCAATAGTAGGGGTT 58.425 50.000 0.00 0.00 0.00 4.11
380 382 4.566987 GGCAATAGTAGGGGTTTAGATCG 58.433 47.826 0.00 0.00 0.00 3.69
384 386 1.293153 AGTAGGGGTTTAGATCGGGGT 59.707 52.381 0.00 0.00 0.00 4.95
386 388 0.916809 AGGGGTTTAGATCGGGGTTG 59.083 55.000 0.00 0.00 0.00 3.77
400 402 1.726533 GGGTTGAACCGCCGACAAAA 61.727 55.000 8.47 0.00 39.83 2.44
406 408 2.902846 CCGCCGACAAAACCACCA 60.903 61.111 0.00 0.00 0.00 4.17
411 413 1.358759 CGACAAAACCACCACCAGC 59.641 57.895 0.00 0.00 0.00 4.85
438 440 4.601794 TGCCACACCCCCTTGCAG 62.602 66.667 0.00 0.00 0.00 4.41
518 521 0.873743 AATGCAAAACGCCACCAACG 60.874 50.000 0.00 0.00 41.33 4.10
530 533 3.423154 CCAACGACTGGCTTCGGC 61.423 66.667 12.59 0.00 43.58 5.54
531 534 3.777925 CAACGACTGGCTTCGGCG 61.778 66.667 0.00 0.00 43.58 6.46
593 942 5.067153 TCCAGACAAAACAAAACGATGATGT 59.933 36.000 0.00 0.00 0.00 3.06
663 1012 9.661563 ATCTAACGGAATCAACTGTGTTATTTA 57.338 29.630 0.00 0.00 0.00 1.40
727 1077 0.179004 TCATGGGTTCGGTGCTGTTT 60.179 50.000 0.00 0.00 0.00 2.83
1611 1976 0.258194 TCTCCTTCGGACTAGACCCC 59.742 60.000 5.63 0.00 0.00 4.95
1995 2360 2.960688 GCTCTCCAAGAACCCCGCT 61.961 63.158 0.00 0.00 0.00 5.52
2047 2412 0.108615 CGGCGAGAAGACAAGGACAT 60.109 55.000 0.00 0.00 0.00 3.06
2163 2528 4.760047 AAGTTCTGCGCCGCCGAT 62.760 61.111 6.63 0.00 36.29 4.18
2274 2639 1.209383 CGACTGCGAGAAGTTCCGA 59.791 57.895 15.19 3.25 40.82 4.55
2405 2770 0.179000 ATGGAGATGAAGGCGGTGAC 59.821 55.000 0.00 0.00 0.00 3.67
2559 2940 6.470278 TGTTGAGTACTGTAGTAGCTAGACA 58.530 40.000 0.00 7.91 0.00 3.41
2655 3036 8.971073 ACAAAAGAAGAGGAGAAATTTCTTCAA 58.029 29.630 25.20 0.00 45.79 2.69
2694 3075 6.635030 AGAAGAAACAATTGGTGGTTACTC 57.365 37.500 10.83 0.00 37.24 2.59
2695 3076 6.365520 AGAAGAAACAATTGGTGGTTACTCT 58.634 36.000 10.83 0.00 37.24 3.24
2696 3077 6.833933 AGAAGAAACAATTGGTGGTTACTCTT 59.166 34.615 10.83 7.93 37.24 2.85
2697 3078 7.342026 AGAAGAAACAATTGGTGGTTACTCTTT 59.658 33.333 10.83 0.00 37.24 2.52
2698 3079 7.418337 AGAAACAATTGGTGGTTACTCTTTT 57.582 32.000 10.83 0.00 37.24 2.27
2699 3080 7.489160 AGAAACAATTGGTGGTTACTCTTTTC 58.511 34.615 10.83 6.09 37.24 2.29
2700 3081 7.342026 AGAAACAATTGGTGGTTACTCTTTTCT 59.658 33.333 10.83 8.16 37.24 2.52
2701 3082 7.418337 AACAATTGGTGGTTACTCTTTTCTT 57.582 32.000 10.83 0.00 0.00 2.52
2702 3083 7.418337 ACAATTGGTGGTTACTCTTTTCTTT 57.582 32.000 10.83 0.00 0.00 2.52
2703 3084 7.847096 ACAATTGGTGGTTACTCTTTTCTTTT 58.153 30.769 10.83 0.00 0.00 2.27
2704 3085 8.318412 ACAATTGGTGGTTACTCTTTTCTTTTT 58.682 29.630 10.83 0.00 0.00 1.94
2757 3138 9.320352 GGTAAATAAAACATCCGCCATTAAAAT 57.680 29.630 0.00 0.00 0.00 1.82
2784 3165 4.843728 CTTGAGGTTTAGCTCCATGGTAA 58.156 43.478 12.58 0.00 36.91 2.85
2785 3166 5.440610 CTTGAGGTTTAGCTCCATGGTAAT 58.559 41.667 12.58 0.96 38.27 1.89
2787 3168 6.763715 TGAGGTTTAGCTCCATGGTAATAT 57.236 37.500 12.58 0.00 38.27 1.28
2788 3169 6.769512 TGAGGTTTAGCTCCATGGTAATATC 58.230 40.000 12.58 3.19 38.27 1.63
2789 3170 6.328934 TGAGGTTTAGCTCCATGGTAATATCA 59.671 38.462 12.58 5.48 38.27 2.15
2790 3171 7.017551 TGAGGTTTAGCTCCATGGTAATATCAT 59.982 37.037 12.58 0.00 38.27 2.45
2791 3172 8.449423 AGGTTTAGCTCCATGGTAATATCATA 57.551 34.615 12.58 0.00 38.27 2.15
2792 3173 8.322091 AGGTTTAGCTCCATGGTAATATCATAC 58.678 37.037 12.58 0.91 38.27 2.39
2793 3174 8.100791 GGTTTAGCTCCATGGTAATATCATACA 58.899 37.037 12.58 0.00 38.27 2.29
2794 3175 9.155975 GTTTAGCTCCATGGTAATATCATACAG 57.844 37.037 12.58 0.00 38.27 2.74
2795 3176 6.942163 AGCTCCATGGTAATATCATACAGT 57.058 37.500 12.58 0.00 0.00 3.55
2796 3177 9.541884 TTAGCTCCATGGTAATATCATACAGTA 57.458 33.333 12.58 0.00 34.17 2.74
2797 3178 7.841956 AGCTCCATGGTAATATCATACAGTAC 58.158 38.462 12.58 0.00 0.00 2.73
2856 3237 2.347490 GCAGCCTGGACGAGGAAA 59.653 61.111 7.84 0.00 46.33 3.13
2898 3279 4.512914 GAGCAGGGCATGGGGGAC 62.513 72.222 0.00 0.00 0.00 4.46
2942 3323 1.557371 GGGAAGAAGCAAGGTAGAGCT 59.443 52.381 0.00 0.00 44.31 4.09
2944 3325 2.626840 GAAGAAGCAAGGTAGAGCTGG 58.373 52.381 0.00 0.00 41.70 4.85
2948 3329 1.003355 GCAAGGTAGAGCTGGTGCA 60.003 57.895 0.00 0.00 42.74 4.57
2949 3330 0.606401 GCAAGGTAGAGCTGGTGCAA 60.606 55.000 0.00 0.00 42.74 4.08
2950 3331 1.160137 CAAGGTAGAGCTGGTGCAAC 58.840 55.000 0.00 0.00 42.74 4.17
2988 3371 2.205074 CAAGCCTCCGTAGCAGTATTG 58.795 52.381 0.00 0.00 0.00 1.90
2992 3375 2.224066 GCCTCCGTAGCAGTATTGTGAT 60.224 50.000 0.00 0.00 0.00 3.06
3000 3383 5.447279 CGTAGCAGTATTGTGATTTTCACCC 60.447 44.000 5.27 0.00 46.40 4.61
3001 3384 4.406456 AGCAGTATTGTGATTTTCACCCA 58.594 39.130 5.27 0.00 46.40 4.51
3007 3390 8.711457 CAGTATTGTGATTTTCACCCATTTTTC 58.289 33.333 5.27 0.00 46.40 2.29
3013 3397 5.305128 TGATTTTCACCCATTTTTCTGAGCT 59.695 36.000 0.00 0.00 0.00 4.09
3017 3401 2.029649 CACCCATTTTTCTGAGCTGGTG 60.030 50.000 0.00 0.00 36.42 4.17
3048 3432 0.250295 CCTGAAAGAGTGCCGACCAA 60.250 55.000 0.00 0.00 34.07 3.67
3050 3434 0.756294 TGAAAGAGTGCCGACCAAGA 59.244 50.000 0.00 0.00 0.00 3.02
3054 3438 1.376037 GAGTGCCGACCAAGAAGGG 60.376 63.158 0.00 0.00 43.89 3.95
3057 3441 0.822121 GTGCCGACCAAGAAGGGTTT 60.822 55.000 0.00 0.00 42.53 3.27
3058 3442 0.106419 TGCCGACCAAGAAGGGTTTT 60.106 50.000 0.00 0.00 42.53 2.43
3059 3443 1.037493 GCCGACCAAGAAGGGTTTTT 58.963 50.000 0.00 0.00 42.53 1.94
3081 3465 2.217429 TTTTGGAACGGAGCAAAAGC 57.783 45.000 0.00 0.00 0.00 3.51
3082 3466 1.398692 TTTGGAACGGAGCAAAAGCT 58.601 45.000 0.00 0.00 0.00 3.74
3083 3467 1.398692 TTGGAACGGAGCAAAAGCTT 58.601 45.000 0.00 0.00 0.00 3.74
3084 3468 1.398692 TGGAACGGAGCAAAAGCTTT 58.601 45.000 5.69 5.69 0.00 3.51
3085 3469 1.066908 TGGAACGGAGCAAAAGCTTTG 59.933 47.619 13.54 8.26 0.00 2.77
3086 3470 1.131771 GAACGGAGCAAAAGCTTTGC 58.868 50.000 13.54 17.35 45.22 3.68
3087 3471 0.249447 AACGGAGCAAAAGCTTTGCC 60.249 50.000 21.98 15.93 45.98 4.52
3088 3472 1.109323 ACGGAGCAAAAGCTTTGCCT 61.109 50.000 21.98 16.89 45.98 4.75
3089 3473 0.387750 CGGAGCAAAAGCTTTGCCTC 60.388 55.000 22.05 22.05 45.98 4.70
3090 3474 0.675633 GGAGCAAAAGCTTTGCCTCA 59.324 50.000 27.16 0.00 45.98 3.86
3091 3475 1.274447 GGAGCAAAAGCTTTGCCTCAT 59.726 47.619 27.16 13.54 45.98 2.90
3092 3476 2.603953 GAGCAAAAGCTTTGCCTCATC 58.396 47.619 23.87 14.72 45.98 2.92
3093 3477 1.274447 AGCAAAAGCTTTGCCTCATCC 59.726 47.619 21.98 0.00 45.98 3.51
3094 3478 1.001181 GCAAAAGCTTTGCCTCATCCA 59.999 47.619 13.54 0.00 39.38 3.41
3095 3479 2.354403 GCAAAAGCTTTGCCTCATCCAT 60.354 45.455 13.54 0.00 39.38 3.41
3096 3480 3.867216 GCAAAAGCTTTGCCTCATCCATT 60.867 43.478 13.54 0.00 39.38 3.16
3097 3481 4.621274 GCAAAAGCTTTGCCTCATCCATTA 60.621 41.667 13.54 0.00 39.38 1.90
3098 3482 5.481105 CAAAAGCTTTGCCTCATCCATTAA 58.519 37.500 13.54 0.00 0.00 1.40
3099 3483 5.743636 AAAGCTTTGCCTCATCCATTAAA 57.256 34.783 11.80 0.00 0.00 1.52
3100 3484 5.945144 AAGCTTTGCCTCATCCATTAAAT 57.055 34.783 0.00 0.00 0.00 1.40
3101 3485 7.422465 AAAGCTTTGCCTCATCCATTAAATA 57.578 32.000 11.80 0.00 0.00 1.40
3102 3486 7.422465 AAGCTTTGCCTCATCCATTAAATAA 57.578 32.000 0.00 0.00 0.00 1.40
3103 3487 7.047460 AGCTTTGCCTCATCCATTAAATAAG 57.953 36.000 0.00 0.00 0.00 1.73
3104 3488 6.835488 AGCTTTGCCTCATCCATTAAATAAGA 59.165 34.615 0.00 0.00 0.00 2.10
3105 3489 7.342799 AGCTTTGCCTCATCCATTAAATAAGAA 59.657 33.333 0.00 0.00 0.00 2.52
3106 3490 7.436376 GCTTTGCCTCATCCATTAAATAAGAAC 59.564 37.037 0.00 0.00 0.00 3.01
3107 3491 6.618287 TGCCTCATCCATTAAATAAGAACG 57.382 37.500 0.00 0.00 0.00 3.95
3108 3492 6.353323 TGCCTCATCCATTAAATAAGAACGA 58.647 36.000 0.00 0.00 0.00 3.85
3109 3493 6.826231 TGCCTCATCCATTAAATAAGAACGAA 59.174 34.615 0.00 0.00 0.00 3.85
3110 3494 7.338196 TGCCTCATCCATTAAATAAGAACGAAA 59.662 33.333 0.00 0.00 0.00 3.46
3111 3495 8.188139 GCCTCATCCATTAAATAAGAACGAAAA 58.812 33.333 0.00 0.00 0.00 2.29
3141 3525 3.191836 CACGTGTGGGTGTTTGCA 58.808 55.556 7.58 0.00 33.24 4.08
3142 3526 1.063972 CACGTGTGGGTGTTTGCAG 59.936 57.895 7.58 0.00 33.24 4.41
3143 3527 1.078072 ACGTGTGGGTGTTTGCAGA 60.078 52.632 0.00 0.00 0.00 4.26
3144 3528 0.465460 ACGTGTGGGTGTTTGCAGAT 60.465 50.000 0.00 0.00 0.00 2.90
3145 3529 0.238289 CGTGTGGGTGTTTGCAGATC 59.762 55.000 0.00 0.00 0.00 2.75
3146 3530 1.317613 GTGTGGGTGTTTGCAGATCA 58.682 50.000 0.00 0.00 0.00 2.92
3147 3531 1.001378 GTGTGGGTGTTTGCAGATCAC 60.001 52.381 0.00 8.72 0.00 3.06
3150 3534 1.875963 GGTGTTTGCAGATCACCCG 59.124 57.895 19.48 0.00 43.84 5.28
3151 3535 1.210155 GTGTTTGCAGATCACCCGC 59.790 57.895 0.00 0.00 0.00 6.13
3152 3536 1.228094 TGTTTGCAGATCACCCGCA 60.228 52.632 0.00 0.00 0.00 5.69
3153 3537 1.210155 GTTTGCAGATCACCCGCAC 59.790 57.895 0.00 0.00 34.87 5.34
3154 3538 2.324330 TTTGCAGATCACCCGCACG 61.324 57.895 0.00 0.00 34.87 5.34
3157 3541 4.457496 CAGATCACCCGCACGCCT 62.457 66.667 0.00 0.00 0.00 5.52
3158 3542 4.148825 AGATCACCCGCACGCCTC 62.149 66.667 0.00 0.00 0.00 4.70
3166 3550 4.758251 CGCACGCCTCCATCACCA 62.758 66.667 0.00 0.00 0.00 4.17
3167 3551 2.124570 GCACGCCTCCATCACCAT 60.125 61.111 0.00 0.00 0.00 3.55
3168 3552 2.182842 GCACGCCTCCATCACCATC 61.183 63.158 0.00 0.00 0.00 3.51
3169 3553 1.524621 CACGCCTCCATCACCATCC 60.525 63.158 0.00 0.00 0.00 3.51
3170 3554 1.995066 ACGCCTCCATCACCATCCA 60.995 57.895 0.00 0.00 0.00 3.41
3171 3555 1.348008 ACGCCTCCATCACCATCCAT 61.348 55.000 0.00 0.00 0.00 3.41
3172 3556 0.179009 CGCCTCCATCACCATCCATT 60.179 55.000 0.00 0.00 0.00 3.16
3173 3557 1.751733 CGCCTCCATCACCATCCATTT 60.752 52.381 0.00 0.00 0.00 2.32
3174 3558 2.391678 GCCTCCATCACCATCCATTTT 58.608 47.619 0.00 0.00 0.00 1.82
3175 3559 3.565307 GCCTCCATCACCATCCATTTTA 58.435 45.455 0.00 0.00 0.00 1.52
3176 3560 3.319122 GCCTCCATCACCATCCATTTTAC 59.681 47.826 0.00 0.00 0.00 2.01
3177 3561 3.891366 CCTCCATCACCATCCATTTTACC 59.109 47.826 0.00 0.00 0.00 2.85
3178 3562 4.535781 CTCCATCACCATCCATTTTACCA 58.464 43.478 0.00 0.00 0.00 3.25
3179 3563 4.277476 TCCATCACCATCCATTTTACCAC 58.723 43.478 0.00 0.00 0.00 4.16
3180 3564 3.066621 CCATCACCATCCATTTTACCACG 59.933 47.826 0.00 0.00 0.00 4.94
3181 3565 3.426787 TCACCATCCATTTTACCACGT 57.573 42.857 0.00 0.00 0.00 4.49
3182 3566 4.554960 TCACCATCCATTTTACCACGTA 57.445 40.909 0.00 0.00 0.00 3.57
3183 3567 5.105567 TCACCATCCATTTTACCACGTAT 57.894 39.130 0.00 0.00 0.00 3.06
3184 3568 4.878971 TCACCATCCATTTTACCACGTATG 59.121 41.667 0.00 0.00 0.00 2.39
3185 3569 4.878971 CACCATCCATTTTACCACGTATGA 59.121 41.667 0.00 0.00 0.00 2.15
3186 3570 5.355630 CACCATCCATTTTACCACGTATGAA 59.644 40.000 0.00 0.00 0.00 2.57
3187 3571 6.039270 CACCATCCATTTTACCACGTATGAAT 59.961 38.462 0.00 0.00 0.00 2.57
3188 3572 7.227711 CACCATCCATTTTACCACGTATGAATA 59.772 37.037 0.00 0.00 0.00 1.75
3189 3573 7.444183 ACCATCCATTTTACCACGTATGAATAG 59.556 37.037 0.00 0.00 0.00 1.73
3190 3574 7.659799 CCATCCATTTTACCACGTATGAATAGA 59.340 37.037 0.00 0.00 0.00 1.98
3191 3575 8.495949 CATCCATTTTACCACGTATGAATAGAC 58.504 37.037 0.00 0.00 0.00 2.59
3192 3576 6.698329 TCCATTTTACCACGTATGAATAGACG 59.302 38.462 0.00 0.00 46.29 4.18
3193 3577 6.698329 CCATTTTACCACGTATGAATAGACGA 59.302 38.462 1.27 0.00 43.80 4.20
3194 3578 7.306399 CCATTTTACCACGTATGAATAGACGAC 60.306 40.741 1.27 0.00 43.80 4.34
3195 3579 5.816449 TTACCACGTATGAATAGACGACA 57.184 39.130 1.27 0.00 43.80 4.35
3196 3580 4.913335 ACCACGTATGAATAGACGACAT 57.087 40.909 1.27 0.00 43.80 3.06
3197 3581 4.856664 ACCACGTATGAATAGACGACATC 58.143 43.478 1.27 0.00 43.80 3.06
3198 3582 4.337274 ACCACGTATGAATAGACGACATCA 59.663 41.667 1.27 0.00 43.80 3.07
3199 3583 4.912187 CCACGTATGAATAGACGACATCAG 59.088 45.833 1.27 0.00 43.80 2.90
3200 3584 4.380087 CACGTATGAATAGACGACATCAGC 59.620 45.833 1.27 0.00 43.80 4.26
3201 3585 4.036380 ACGTATGAATAGACGACATCAGCA 59.964 41.667 1.27 0.00 43.80 4.41
3202 3586 4.614702 CGTATGAATAGACGACATCAGCAG 59.385 45.833 0.00 0.00 43.80 4.24
3203 3587 4.926140 ATGAATAGACGACATCAGCAGA 57.074 40.909 0.00 0.00 0.00 4.26
3204 3588 4.718940 TGAATAGACGACATCAGCAGAA 57.281 40.909 0.00 0.00 0.00 3.02
3205 3589 5.072040 TGAATAGACGACATCAGCAGAAA 57.928 39.130 0.00 0.00 0.00 2.52
3206 3590 5.664457 TGAATAGACGACATCAGCAGAAAT 58.336 37.500 0.00 0.00 0.00 2.17
3207 3591 6.108687 TGAATAGACGACATCAGCAGAAATT 58.891 36.000 0.00 0.00 0.00 1.82
3208 3592 6.595326 TGAATAGACGACATCAGCAGAAATTT 59.405 34.615 0.00 0.00 0.00 1.82
3209 3593 6.992063 ATAGACGACATCAGCAGAAATTTT 57.008 33.333 0.00 0.00 0.00 1.82
3210 3594 5.695851 AGACGACATCAGCAGAAATTTTT 57.304 34.783 0.00 0.00 0.00 1.94
3232 3616 6.986904 TTTTGGTTTTCGGCTTAAAAATGT 57.013 29.167 0.00 0.00 30.53 2.71
3233 3617 6.986904 TTTGGTTTTCGGCTTAAAAATGTT 57.013 29.167 0.00 0.00 30.53 2.71
3234 3618 6.986904 TTGGTTTTCGGCTTAAAAATGTTT 57.013 29.167 0.00 0.00 30.53 2.83
3235 3619 6.986904 TGGTTTTCGGCTTAAAAATGTTTT 57.013 29.167 0.00 0.00 30.53 2.43
3236 3620 8.488651 TTGGTTTTCGGCTTAAAAATGTTTTA 57.511 26.923 0.00 0.00 30.53 1.52
3237 3621 8.664211 TGGTTTTCGGCTTAAAAATGTTTTAT 57.336 26.923 0.00 0.00 30.53 1.40
3238 3622 8.766151 TGGTTTTCGGCTTAAAAATGTTTTATC 58.234 29.630 0.00 0.00 30.53 1.75
3239 3623 8.984764 GGTTTTCGGCTTAAAAATGTTTTATCT 58.015 29.630 0.00 0.00 30.53 1.98
3241 3625 8.751302 TTTCGGCTTAAAAATGTTTTATCTCC 57.249 30.769 0.00 0.00 0.00 3.71
3242 3626 7.696992 TCGGCTTAAAAATGTTTTATCTCCT 57.303 32.000 0.00 0.00 0.00 3.69
3243 3627 8.795842 TCGGCTTAAAAATGTTTTATCTCCTA 57.204 30.769 0.00 0.00 0.00 2.94
3244 3628 9.233649 TCGGCTTAAAAATGTTTTATCTCCTAA 57.766 29.630 0.00 0.00 0.00 2.69
3245 3629 9.849166 CGGCTTAAAAATGTTTTATCTCCTAAA 57.151 29.630 0.00 0.00 0.00 1.85
3277 3661 9.844257 AATCAAACTAAAAATCCATTTTCACCA 57.156 25.926 0.00 0.00 41.42 4.17
3279 3663 9.844257 TCAAACTAAAAATCCATTTTCACCATT 57.156 25.926 0.00 0.00 41.42 3.16
3286 3670 8.491331 AAAATCCATTTTCACCATTAAATCCG 57.509 30.769 0.00 0.00 35.18 4.18
3287 3671 6.790232 ATCCATTTTCACCATTAAATCCGT 57.210 33.333 0.00 0.00 0.00 4.69
3288 3672 6.202516 TCCATTTTCACCATTAAATCCGTC 57.797 37.500 0.00 0.00 0.00 4.79
3289 3673 5.949354 TCCATTTTCACCATTAAATCCGTCT 59.051 36.000 0.00 0.00 0.00 4.18
3290 3674 6.435904 TCCATTTTCACCATTAAATCCGTCTT 59.564 34.615 0.00 0.00 0.00 3.01
3291 3675 6.531240 CCATTTTCACCATTAAATCCGTCTTG 59.469 38.462 0.00 0.00 0.00 3.02
3292 3676 6.885952 TTTTCACCATTAAATCCGTCTTGA 57.114 33.333 0.00 0.00 0.00 3.02
3293 3677 5.873179 TTCACCATTAAATCCGTCTTGAC 57.127 39.130 0.00 0.00 0.00 3.18
3294 3678 3.930229 TCACCATTAAATCCGTCTTGACG 59.070 43.478 15.28 15.28 0.00 4.35
3295 3679 3.930229 CACCATTAAATCCGTCTTGACGA 59.070 43.478 22.54 10.41 34.64 4.20
3296 3680 4.032900 CACCATTAAATCCGTCTTGACGAG 59.967 45.833 22.54 13.31 34.64 4.18
3297 3681 4.081862 ACCATTAAATCCGTCTTGACGAGA 60.082 41.667 22.54 17.42 34.64 4.04
3298 3682 5.050490 CCATTAAATCCGTCTTGACGAGAT 58.950 41.667 22.54 18.63 36.61 2.75
3299 3683 5.175856 CCATTAAATCCGTCTTGACGAGATC 59.824 44.000 22.54 0.00 36.61 2.75
3300 3684 5.578005 TTAAATCCGTCTTGACGAGATCT 57.422 39.130 22.54 12.99 36.61 2.75
3301 3685 4.457834 AAATCCGTCTTGACGAGATCTT 57.542 40.909 22.54 15.20 36.61 2.40
3302 3686 3.701532 ATCCGTCTTGACGAGATCTTC 57.298 47.619 22.54 0.00 36.61 2.87
3303 3687 2.433436 TCCGTCTTGACGAGATCTTCA 58.567 47.619 22.54 0.00 36.61 3.02
3304 3688 2.817844 TCCGTCTTGACGAGATCTTCAA 59.182 45.455 22.54 9.06 36.61 2.69
3305 3689 3.254903 TCCGTCTTGACGAGATCTTCAAA 59.745 43.478 22.54 1.43 36.61 2.69
3306 3690 3.987868 CCGTCTTGACGAGATCTTCAAAA 59.012 43.478 22.54 0.00 36.61 2.44
3307 3691 4.143305 CCGTCTTGACGAGATCTTCAAAAC 60.143 45.833 22.54 7.25 36.61 2.43
3308 3692 4.681942 CGTCTTGACGAGATCTTCAAAACT 59.318 41.667 17.00 0.00 36.61 2.66
3309 3693 5.856986 CGTCTTGACGAGATCTTCAAAACTA 59.143 40.000 17.00 0.00 36.61 2.24
3310 3694 6.032985 CGTCTTGACGAGATCTTCAAAACTAG 59.967 42.308 17.00 0.57 36.61 2.57
3311 3695 7.085116 GTCTTGACGAGATCTTCAAAACTAGA 58.915 38.462 10.34 2.60 36.61 2.43
3312 3696 7.061326 GTCTTGACGAGATCTTCAAAACTAGAC 59.939 40.741 10.34 9.64 36.61 2.59
3313 3697 5.710984 TGACGAGATCTTCAAAACTAGACC 58.289 41.667 0.00 0.00 0.00 3.85
3314 3698 5.074584 ACGAGATCTTCAAAACTAGACCC 57.925 43.478 0.00 0.00 0.00 4.46
3315 3699 4.081586 ACGAGATCTTCAAAACTAGACCCC 60.082 45.833 0.00 0.00 0.00 4.95
3316 3700 4.081642 CGAGATCTTCAAAACTAGACCCCA 60.082 45.833 0.00 0.00 0.00 4.96
3317 3701 5.395768 CGAGATCTTCAAAACTAGACCCCAT 60.396 44.000 0.00 0.00 0.00 4.00
3318 3702 5.749462 AGATCTTCAAAACTAGACCCCATG 58.251 41.667 0.00 0.00 0.00 3.66
3319 3703 4.993705 TCTTCAAAACTAGACCCCATGT 57.006 40.909 0.00 0.00 0.00 3.21
3320 3704 5.319043 TCTTCAAAACTAGACCCCATGTT 57.681 39.130 0.00 0.00 0.00 2.71
3321 3705 5.070001 TCTTCAAAACTAGACCCCATGTTG 58.930 41.667 0.00 0.00 0.00 3.33
3322 3706 4.715534 TCAAAACTAGACCCCATGTTGA 57.284 40.909 0.00 0.00 0.00 3.18
3323 3707 5.255397 TCAAAACTAGACCCCATGTTGAT 57.745 39.130 0.00 0.00 0.00 2.57
3324 3708 6.381498 TCAAAACTAGACCCCATGTTGATA 57.619 37.500 0.00 0.00 0.00 2.15
3325 3709 6.969043 TCAAAACTAGACCCCATGTTGATAT 58.031 36.000 0.00 0.00 0.00 1.63
3326 3710 6.828273 TCAAAACTAGACCCCATGTTGATATG 59.172 38.462 0.00 0.00 0.00 1.78
3327 3711 5.975988 AACTAGACCCCATGTTGATATGT 57.024 39.130 0.00 0.00 0.00 2.29
3328 3712 5.975988 ACTAGACCCCATGTTGATATGTT 57.024 39.130 0.00 0.00 0.00 2.71
3329 3713 6.327386 ACTAGACCCCATGTTGATATGTTT 57.673 37.500 0.00 0.00 0.00 2.83
3330 3714 6.357367 ACTAGACCCCATGTTGATATGTTTC 58.643 40.000 0.00 0.00 0.00 2.78
3331 3715 4.199310 AGACCCCATGTTGATATGTTTCG 58.801 43.478 0.00 0.00 0.00 3.46
3332 3716 4.080582 AGACCCCATGTTGATATGTTTCGA 60.081 41.667 0.00 0.00 0.00 3.71
3333 3717 4.792068 ACCCCATGTTGATATGTTTCGAT 58.208 39.130 0.00 0.00 0.00 3.59
3334 3718 4.580167 ACCCCATGTTGATATGTTTCGATG 59.420 41.667 0.00 0.00 0.00 3.84
3335 3719 4.821260 CCCCATGTTGATATGTTTCGATGA 59.179 41.667 0.00 0.00 0.00 2.92
3336 3720 5.299028 CCCCATGTTGATATGTTTCGATGAA 59.701 40.000 0.00 0.00 0.00 2.57
3337 3721 6.183360 CCCCATGTTGATATGTTTCGATGAAA 60.183 38.462 0.00 0.00 0.00 2.69
3338 3722 7.257003 CCCATGTTGATATGTTTCGATGAAAA 58.743 34.615 0.00 0.00 33.14 2.29
3339 3723 7.922278 CCCATGTTGATATGTTTCGATGAAAAT 59.078 33.333 0.00 0.00 33.14 1.82
3340 3724 9.304731 CCATGTTGATATGTTTCGATGAAAATT 57.695 29.630 0.00 0.00 33.14 1.82
3361 3745 1.198713 TTTTTGCCCAGAAGTTGCCA 58.801 45.000 0.00 0.00 0.00 4.92
3362 3746 1.422531 TTTTGCCCAGAAGTTGCCAT 58.577 45.000 0.00 0.00 0.00 4.40
3363 3747 0.680618 TTTGCCCAGAAGTTGCCATG 59.319 50.000 0.00 0.00 0.00 3.66
3364 3748 0.178967 TTGCCCAGAAGTTGCCATGA 60.179 50.000 0.00 0.00 0.00 3.07
3365 3749 0.040058 TGCCCAGAAGTTGCCATGAT 59.960 50.000 0.00 0.00 0.00 2.45
3366 3750 0.458669 GCCCAGAAGTTGCCATGATG 59.541 55.000 0.00 0.00 0.00 3.07
3367 3751 1.843368 CCCAGAAGTTGCCATGATGT 58.157 50.000 0.00 0.00 0.00 3.06
3368 3752 2.173519 CCCAGAAGTTGCCATGATGTT 58.826 47.619 0.00 0.00 0.00 2.71
3369 3753 2.564062 CCCAGAAGTTGCCATGATGTTT 59.436 45.455 0.00 0.00 0.00 2.83
3370 3754 3.763360 CCCAGAAGTTGCCATGATGTTTA 59.237 43.478 0.00 0.00 0.00 2.01
3371 3755 4.380867 CCCAGAAGTTGCCATGATGTTTAC 60.381 45.833 0.00 0.00 0.00 2.01
3372 3756 4.218200 CCAGAAGTTGCCATGATGTTTACA 59.782 41.667 0.00 0.00 0.00 2.41
3373 3757 5.156355 CAGAAGTTGCCATGATGTTTACAC 58.844 41.667 0.00 0.00 0.00 2.90
3374 3758 5.048504 CAGAAGTTGCCATGATGTTTACACT 60.049 40.000 0.00 0.00 0.00 3.55
3375 3759 6.149308 CAGAAGTTGCCATGATGTTTACACTA 59.851 38.462 0.00 0.00 0.00 2.74
3376 3760 6.886459 AGAAGTTGCCATGATGTTTACACTAT 59.114 34.615 0.00 0.00 0.00 2.12
3377 3761 8.046708 AGAAGTTGCCATGATGTTTACACTATA 58.953 33.333 0.00 0.00 0.00 1.31
3378 3762 7.792374 AGTTGCCATGATGTTTACACTATAG 57.208 36.000 0.00 0.00 0.00 1.31
3379 3763 7.338710 AGTTGCCATGATGTTTACACTATAGT 58.661 34.615 0.00 0.00 0.00 2.12
3380 3764 7.829211 AGTTGCCATGATGTTTACACTATAGTT 59.171 33.333 1.56 0.00 0.00 2.24
3381 3765 7.552458 TGCCATGATGTTTACACTATAGTTG 57.448 36.000 1.56 1.88 0.00 3.16
3382 3766 6.038161 TGCCATGATGTTTACACTATAGTTGC 59.962 38.462 1.56 0.00 0.00 4.17
3383 3767 6.513393 GCCATGATGTTTACACTATAGTTGCC 60.513 42.308 1.56 0.00 0.00 4.52
3384 3768 6.542005 CCATGATGTTTACACTATAGTTGCCA 59.458 38.462 1.56 0.00 0.00 4.92
3385 3769 7.229306 CCATGATGTTTACACTATAGTTGCCAT 59.771 37.037 1.56 1.75 0.00 4.40
3386 3770 9.271828 CATGATGTTTACACTATAGTTGCCATA 57.728 33.333 1.56 0.00 0.00 2.74
3387 3771 8.887036 TGATGTTTACACTATAGTTGCCATAG 57.113 34.615 1.56 0.00 33.10 2.23
3388 3772 8.482943 TGATGTTTACACTATAGTTGCCATAGT 58.517 33.333 1.56 0.00 39.29 2.12
3395 3779 7.969536 CACTATAGTTGCCATAGTGCTTAAT 57.030 36.000 1.56 0.00 45.21 1.40
3396 3780 8.023050 CACTATAGTTGCCATAGTGCTTAATC 57.977 38.462 1.56 0.00 45.21 1.75
3397 3781 7.875041 CACTATAGTTGCCATAGTGCTTAATCT 59.125 37.037 1.56 0.00 45.21 2.40
3398 3782 9.090103 ACTATAGTTGCCATAGTGCTTAATCTA 57.910 33.333 0.00 0.00 37.72 1.98
3399 3783 9.929180 CTATAGTTGCCATAGTGCTTAATCTAA 57.071 33.333 0.00 0.00 0.00 2.10
3401 3785 7.559590 AGTTGCCATAGTGCTTAATCTAAAG 57.440 36.000 0.00 0.00 0.00 1.85
3402 3786 7.112779 AGTTGCCATAGTGCTTAATCTAAAGT 58.887 34.615 0.00 0.00 0.00 2.66
3403 3787 7.611855 AGTTGCCATAGTGCTTAATCTAAAGTT 59.388 33.333 0.00 0.00 0.00 2.66
3404 3788 7.320443 TGCCATAGTGCTTAATCTAAAGTTG 57.680 36.000 0.00 0.00 0.00 3.16
3405 3789 6.183360 TGCCATAGTGCTTAATCTAAAGTTGC 60.183 38.462 0.00 0.00 0.00 4.17
3406 3790 6.729187 CCATAGTGCTTAATCTAAAGTTGCC 58.271 40.000 0.00 0.00 0.00 4.52
3407 3791 6.318648 CCATAGTGCTTAATCTAAAGTTGCCA 59.681 38.462 0.00 0.00 0.00 4.92
3408 3792 7.013655 CCATAGTGCTTAATCTAAAGTTGCCAT 59.986 37.037 0.00 0.00 0.00 4.40
3409 3793 6.199937 AGTGCTTAATCTAAAGTTGCCATG 57.800 37.500 0.00 0.00 0.00 3.66
3410 3794 5.711976 AGTGCTTAATCTAAAGTTGCCATGT 59.288 36.000 0.00 0.00 0.00 3.21
3411 3795 5.801947 GTGCTTAATCTAAAGTTGCCATGTG 59.198 40.000 0.00 0.00 0.00 3.21
3412 3796 5.105797 TGCTTAATCTAAAGTTGCCATGTGG 60.106 40.000 0.00 0.00 38.53 4.17
3428 3812 6.949578 CCATGTGGCAATTTTAGTTTGTAG 57.050 37.500 0.00 0.00 0.00 2.74
3429 3813 6.686630 CCATGTGGCAATTTTAGTTTGTAGA 58.313 36.000 0.00 0.00 0.00 2.59
3430 3814 7.322664 CCATGTGGCAATTTTAGTTTGTAGAT 58.677 34.615 0.00 0.00 0.00 1.98
3431 3815 7.489113 CCATGTGGCAATTTTAGTTTGTAGATC 59.511 37.037 0.00 0.00 0.00 2.75
3432 3816 7.517614 TGTGGCAATTTTAGTTTGTAGATCA 57.482 32.000 0.00 0.00 0.00 2.92
3433 3817 8.121305 TGTGGCAATTTTAGTTTGTAGATCAT 57.879 30.769 0.00 0.00 0.00 2.45
3434 3818 8.028354 TGTGGCAATTTTAGTTTGTAGATCATG 58.972 33.333 0.00 0.00 0.00 3.07
3435 3819 7.489113 GTGGCAATTTTAGTTTGTAGATCATGG 59.511 37.037 0.00 0.00 0.00 3.66
3436 3820 6.476706 GGCAATTTTAGTTTGTAGATCATGGC 59.523 38.462 0.00 0.00 0.00 4.40
3437 3821 7.035004 GCAATTTTAGTTTGTAGATCATGGCA 58.965 34.615 0.00 0.00 0.00 4.92
3438 3822 7.545265 GCAATTTTAGTTTGTAGATCATGGCAA 59.455 33.333 0.00 0.00 0.00 4.52
3439 3823 9.590451 CAATTTTAGTTTGTAGATCATGGCAAT 57.410 29.630 0.00 0.00 0.00 3.56
3442 3826 9.995003 TTTTAGTTTGTAGATCATGGCAATTTT 57.005 25.926 0.00 0.00 0.00 1.82
3445 3829 8.353423 AGTTTGTAGATCATGGCAATTTTAGT 57.647 30.769 0.00 0.00 0.00 2.24
3446 3830 8.806146 AGTTTGTAGATCATGGCAATTTTAGTT 58.194 29.630 0.00 0.00 0.00 2.24
3447 3831 9.423061 GTTTGTAGATCATGGCAATTTTAGTTT 57.577 29.630 0.00 0.00 0.00 2.66
3448 3832 9.995003 TTTGTAGATCATGGCAATTTTAGTTTT 57.005 25.926 0.00 0.00 0.00 2.43
3449 3833 9.995003 TTGTAGATCATGGCAATTTTAGTTTTT 57.005 25.926 0.00 0.00 0.00 1.94
3477 3861 3.153919 TGGCAATTCCAGTACTTTGACC 58.846 45.455 8.13 9.00 40.72 4.02
3478 3862 3.153919 GGCAATTCCAGTACTTTGACCA 58.846 45.455 8.83 0.00 34.01 4.02
3479 3863 3.763897 GGCAATTCCAGTACTTTGACCAT 59.236 43.478 8.83 0.00 34.01 3.55
3480 3864 4.380867 GGCAATTCCAGTACTTTGACCATG 60.381 45.833 8.83 0.00 34.01 3.66
3481 3865 4.458989 GCAATTCCAGTACTTTGACCATGA 59.541 41.667 8.83 0.00 0.00 3.07
3482 3866 5.048083 GCAATTCCAGTACTTTGACCATGAA 60.048 40.000 8.83 0.00 0.00 2.57
3483 3867 6.516527 GCAATTCCAGTACTTTGACCATGAAA 60.517 38.462 8.83 0.00 0.00 2.69
3484 3868 7.432869 CAATTCCAGTACTTTGACCATGAAAA 58.567 34.615 0.00 0.00 0.00 2.29
3485 3869 7.781324 ATTCCAGTACTTTGACCATGAAAAT 57.219 32.000 0.00 0.00 0.00 1.82
3486 3870 8.877864 ATTCCAGTACTTTGACCATGAAAATA 57.122 30.769 0.00 0.00 0.00 1.40
3487 3871 8.877864 TTCCAGTACTTTGACCATGAAAATAT 57.122 30.769 0.00 0.00 0.00 1.28
3488 3872 8.877864 TCCAGTACTTTGACCATGAAAATATT 57.122 30.769 0.00 0.00 0.00 1.28
3489 3873 9.308000 TCCAGTACTTTGACCATGAAAATATTT 57.692 29.630 0.00 0.00 0.00 1.40
3490 3874 9.927668 CCAGTACTTTGACCATGAAAATATTTT 57.072 29.630 13.24 13.24 0.00 1.82
3516 3900 9.566432 TTTTATTGAACCATGGCAATTTTAAGT 57.434 25.926 18.98 1.49 36.27 2.24
3517 3901 8.545229 TTATTGAACCATGGCAATTTTAAGTG 57.455 30.769 18.98 0.00 36.27 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.957535 CGGATTGGCGCTGATGGC 61.958 66.667 7.64 0.00 37.64 4.40
71 72 2.663852 GGTTGTGGTGTCGGTCCG 60.664 66.667 4.39 4.39 0.00 4.79
80 81 0.828022 TTGAGTGTCTCGGTTGTGGT 59.172 50.000 0.00 0.00 32.35 4.16
85 86 2.807108 GCTTTCCTTGAGTGTCTCGGTT 60.807 50.000 0.00 0.00 32.35 4.44
95 96 3.829886 TTGCGTTATGCTTTCCTTGAG 57.170 42.857 0.00 0.00 46.63 3.02
115 116 2.674033 TGCGCTGATGCAAGCCTT 60.674 55.556 9.73 0.00 43.02 4.35
125 126 2.357881 CTGGCTTGTCTGCGCTGA 60.358 61.111 13.46 13.46 0.00 4.26
147 148 4.394078 CGTCGACTCGCGGGTTCA 62.394 66.667 15.53 0.00 41.33 3.18
185 186 2.474816 GATGGGCGACATAGTTCAGAC 58.525 52.381 0.00 0.00 40.72 3.51
186 187 1.067060 CGATGGGCGACATAGTTCAGA 59.933 52.381 0.00 0.00 44.57 3.27
188 189 0.529773 GCGATGGGCGACATAGTTCA 60.530 55.000 0.00 0.00 44.57 3.18
189 190 2.226269 GCGATGGGCGACATAGTTC 58.774 57.895 0.00 0.00 44.57 3.01
218 220 0.320374 TGATCCAGGTTGTCGGTGTC 59.680 55.000 0.00 0.00 0.00 3.67
277 279 2.675075 AATGGTTGTTCGGCCGGG 60.675 61.111 27.83 0.00 0.00 5.73
281 283 0.521735 GACAGGAATGGTTGTTCGGC 59.478 55.000 0.00 0.00 0.00 5.54
309 311 1.229209 AGATCTGGTCGGTGGTGGT 60.229 57.895 0.00 0.00 0.00 4.16
335 337 1.659098 CAACACGGCGGATCTAGTTTC 59.341 52.381 13.24 0.00 0.00 2.78
340 342 1.138036 CGACAACACGGCGGATCTA 59.862 57.895 13.24 0.00 0.00 1.98
349 351 1.924524 CCTACTATTGCCGACAACACG 59.075 52.381 0.00 0.00 38.99 4.49
351 353 1.208535 CCCCTACTATTGCCGACAACA 59.791 52.381 0.00 0.00 38.99 3.33
352 354 1.208776 ACCCCTACTATTGCCGACAAC 59.791 52.381 0.00 0.00 38.99 3.32
362 364 3.143550 ACCCCGATCTAAACCCCTACTAT 59.856 47.826 0.00 0.00 0.00 2.12
380 382 4.629523 TGTCGGCGGTTCAACCCC 62.630 66.667 7.21 2.36 33.75 4.95
384 386 1.030488 TGGTTTTGTCGGCGGTTCAA 61.030 50.000 7.21 7.98 0.00 2.69
386 388 1.009335 GTGGTTTTGTCGGCGGTTC 60.009 57.895 7.21 0.00 0.00 3.62
395 397 0.033601 TGAGCTGGTGGTGGTTTTGT 60.034 50.000 0.00 0.00 0.00 2.83
400 402 3.570212 GGGTGAGCTGGTGGTGGT 61.570 66.667 0.00 0.00 0.00 4.16
490 493 1.451651 GCGTTTTGCATTGTTTCTCGG 59.548 47.619 0.00 0.00 45.45 4.63
518 521 3.665675 ATCACCGCCGAAGCCAGTC 62.666 63.158 0.00 0.00 34.57 3.51
523 526 0.039527 AAAAACATCACCGCCGAAGC 60.040 50.000 0.00 0.00 0.00 3.86
569 918 5.067153 ACATCATCGTTTTGTTTTGTCTGGA 59.933 36.000 0.00 0.00 0.00 3.86
670 1019 2.200067 CTAGCAGTCGCCTGAATCTTG 58.800 52.381 0.00 0.00 41.50 3.02
694 1043 1.315690 CCATGATACAAGGGCTGCTG 58.684 55.000 0.00 0.00 0.00 4.41
807 1164 2.001872 TGTGCACAGCTCATACAATCG 58.998 47.619 17.42 0.00 0.00 3.34
811 1168 1.511850 GTGTGTGCACAGCTCATACA 58.488 50.000 22.40 10.05 44.64 2.29
862 1219 4.560856 GCCACACGTGCGCCAAAA 62.561 61.111 17.22 0.00 0.00 2.44
2047 2412 0.943835 TCGTACGTGGTCTTCGACGA 60.944 55.000 16.05 0.00 45.88 4.20
2130 2495 0.464036 ACTTGGAGTCGAACTGCACA 59.536 50.000 8.31 2.00 46.28 4.57
2559 2940 6.014647 TCCCTATGTACAGTACAGAAACAGT 58.985 40.000 18.30 3.11 42.77 3.55
2595 2976 8.712228 ACAACTTCCCTTCTCATTAATTTCTT 57.288 30.769 0.00 0.00 0.00 2.52
2702 3083 4.489306 AACCACCAATTTTTCCCGAAAA 57.511 36.364 0.00 0.00 41.20 2.29
2703 3084 4.650131 AGTAACCACCAATTTTTCCCGAAA 59.350 37.500 0.00 0.00 0.00 3.46
2704 3085 4.216708 AGTAACCACCAATTTTTCCCGAA 58.783 39.130 0.00 0.00 0.00 4.30
2705 3086 3.822167 GAGTAACCACCAATTTTTCCCGA 59.178 43.478 0.00 0.00 0.00 5.14
2706 3087 3.057104 GGAGTAACCACCAATTTTTCCCG 60.057 47.826 0.00 0.00 38.79 5.14
2707 3088 3.898741 TGGAGTAACCACCAATTTTTCCC 59.101 43.478 0.00 0.00 44.64 3.97
2720 3101 8.410912 GGATGTTTTATTTACCATGGAGTAACC 58.589 37.037 21.47 5.21 32.05 2.85
2730 3111 5.923733 AATGGCGGATGTTTTATTTACCA 57.076 34.783 0.00 0.00 0.00 3.25
2731 3112 8.705048 TTTTAATGGCGGATGTTTTATTTACC 57.295 30.769 0.00 0.00 0.00 2.85
2757 3138 2.843730 TGGAGCTAAACCTCAAGCCATA 59.156 45.455 0.00 0.00 39.64 2.74
2759 3140 1.064003 TGGAGCTAAACCTCAAGCCA 58.936 50.000 0.00 0.00 39.64 4.75
2771 3152 8.967918 GTACTGTATGATATTACCATGGAGCTA 58.032 37.037 21.47 6.56 0.00 3.32
2787 3168 9.582431 GTTTGCATCTAAACTAGTACTGTATGA 57.418 33.333 5.39 2.49 37.52 2.15
2788 3169 9.366216 TGTTTGCATCTAAACTAGTACTGTATG 57.634 33.333 5.39 4.12 40.36 2.39
2790 3171 9.366216 CATGTTTGCATCTAAACTAGTACTGTA 57.634 33.333 5.39 0.00 40.36 2.74
2791 3172 8.094548 TCATGTTTGCATCTAAACTAGTACTGT 58.905 33.333 5.39 0.00 40.36 3.55
2792 3173 8.479313 TCATGTTTGCATCTAAACTAGTACTG 57.521 34.615 5.39 0.00 40.36 2.74
2793 3174 7.278868 GCTCATGTTTGCATCTAAACTAGTACT 59.721 37.037 0.00 0.00 40.36 2.73
2794 3175 7.402640 GCTCATGTTTGCATCTAAACTAGTAC 58.597 38.462 0.00 0.00 40.36 2.73
2795 3176 6.538742 GGCTCATGTTTGCATCTAAACTAGTA 59.461 38.462 0.00 0.00 40.36 1.82
2796 3177 5.355350 GGCTCATGTTTGCATCTAAACTAGT 59.645 40.000 0.00 0.00 40.36 2.57
2797 3178 5.503031 CGGCTCATGTTTGCATCTAAACTAG 60.503 44.000 9.44 0.00 40.36 2.57
2856 3237 7.066163 TCGAATCAAATGTTCATTATGCTCAGT 59.934 33.333 0.00 0.00 0.00 3.41
2898 3279 0.468029 AAACAACCAGGCAGGACAGG 60.468 55.000 1.67 0.00 41.22 4.00
2904 3285 1.300080 CGGCAAAACAACCAGGCAG 60.300 57.895 0.00 0.00 0.00 4.85
2969 3350 1.831736 ACAATACTGCTACGGAGGCTT 59.168 47.619 0.00 0.00 0.00 4.35
2988 3371 5.406477 GCTCAGAAAAATGGGTGAAAATCAC 59.594 40.000 1.88 1.88 46.23 3.06
2992 3375 4.202243 CCAGCTCAGAAAAATGGGTGAAAA 60.202 41.667 0.00 0.00 0.00 2.29
2998 3381 2.242043 ACACCAGCTCAGAAAAATGGG 58.758 47.619 0.00 0.00 35.26 4.00
3000 3383 4.935702 TCAAACACCAGCTCAGAAAAATG 58.064 39.130 0.00 0.00 0.00 2.32
3001 3384 5.796424 ATCAAACACCAGCTCAGAAAAAT 57.204 34.783 0.00 0.00 0.00 1.82
3007 3390 4.293415 GTGAAAATCAAACACCAGCTCAG 58.707 43.478 0.00 0.00 0.00 3.35
3017 3401 5.460091 GCACTCTTTCAGGTGAAAATCAAAC 59.540 40.000 6.61 0.00 42.72 2.93
3061 3445 2.545731 GCTTTTGCTCCGTTCCAAAAA 58.454 42.857 0.00 0.00 39.56 1.94
3062 3446 2.217429 GCTTTTGCTCCGTTCCAAAA 57.783 45.000 0.00 0.00 43.35 2.44
3063 3447 3.957383 GCTTTTGCTCCGTTCCAAA 57.043 47.368 0.00 0.00 43.35 3.28
3075 3459 3.604875 ATGGATGAGGCAAAGCTTTTG 57.395 42.857 9.53 6.62 0.00 2.44
3076 3460 5.743636 TTAATGGATGAGGCAAAGCTTTT 57.256 34.783 9.53 0.00 0.00 2.27
3077 3461 5.743636 TTTAATGGATGAGGCAAAGCTTT 57.256 34.783 5.69 5.69 0.00 3.51
3078 3462 5.945144 ATTTAATGGATGAGGCAAAGCTT 57.055 34.783 0.00 0.00 0.00 3.74
3079 3463 6.835488 TCTTATTTAATGGATGAGGCAAAGCT 59.165 34.615 0.00 0.00 0.00 3.74
3080 3464 7.042797 TCTTATTTAATGGATGAGGCAAAGC 57.957 36.000 0.00 0.00 0.00 3.51
3081 3465 7.645340 CGTTCTTATTTAATGGATGAGGCAAAG 59.355 37.037 0.00 0.00 0.00 2.77
3082 3466 7.338196 TCGTTCTTATTTAATGGATGAGGCAAA 59.662 33.333 0.00 0.00 0.00 3.68
3083 3467 6.826231 TCGTTCTTATTTAATGGATGAGGCAA 59.174 34.615 0.00 0.00 0.00 4.52
3084 3468 6.353323 TCGTTCTTATTTAATGGATGAGGCA 58.647 36.000 0.00 0.00 0.00 4.75
3085 3469 6.861065 TCGTTCTTATTTAATGGATGAGGC 57.139 37.500 0.00 0.00 0.00 4.70
3109 3493 1.064357 CACGTGTGGGCGTTAGTTTTT 59.936 47.619 7.58 0.00 43.83 1.94
3110 3494 0.658897 CACGTGTGGGCGTTAGTTTT 59.341 50.000 7.58 0.00 43.83 2.43
3111 3495 0.462403 ACACGTGTGGGCGTTAGTTT 60.462 50.000 22.71 0.00 43.83 2.66
3112 3496 1.144496 ACACGTGTGGGCGTTAGTT 59.856 52.632 22.71 0.00 43.83 2.24
3113 3497 1.593209 CACACGTGTGGGCGTTAGT 60.593 57.895 35.65 1.12 43.83 2.24
3114 3498 3.240203 CACACGTGTGGGCGTTAG 58.760 61.111 35.65 12.08 43.83 2.34
3122 3506 1.226547 GCAAACACCCACACGTGTG 60.227 57.895 36.13 36.13 46.19 3.82
3124 3508 1.063972 CTGCAAACACCCACACGTG 59.936 57.895 15.48 15.48 39.75 4.49
3125 3509 0.465460 ATCTGCAAACACCCACACGT 60.465 50.000 0.00 0.00 0.00 4.49
3126 3510 0.238289 GATCTGCAAACACCCACACG 59.762 55.000 0.00 0.00 0.00 4.49
3127 3511 1.001378 GTGATCTGCAAACACCCACAC 60.001 52.381 0.00 0.00 0.00 3.82
3128 3512 1.317613 GTGATCTGCAAACACCCACA 58.682 50.000 0.00 0.00 0.00 4.17
3129 3513 0.598065 GGTGATCTGCAAACACCCAC 59.402 55.000 19.45 8.40 45.53 4.61
3130 3514 3.034924 GGTGATCTGCAAACACCCA 57.965 52.632 19.45 0.00 45.53 4.51
3133 3517 1.210155 GCGGGTGATCTGCAAACAC 59.790 57.895 0.00 8.45 46.73 3.32
3134 3518 3.667087 GCGGGTGATCTGCAAACA 58.333 55.556 0.00 0.00 46.73 2.83
3140 3524 4.457496 AGGCGTGCGGGTGATCTG 62.457 66.667 0.00 0.00 0.00 2.90
3141 3525 4.148825 GAGGCGTGCGGGTGATCT 62.149 66.667 0.00 0.00 0.00 2.75
3149 3533 4.758251 TGGTGATGGAGGCGTGCG 62.758 66.667 0.00 0.00 0.00 5.34
3150 3534 2.124570 ATGGTGATGGAGGCGTGC 60.125 61.111 0.00 0.00 0.00 5.34
3151 3535 1.524621 GGATGGTGATGGAGGCGTG 60.525 63.158 0.00 0.00 0.00 5.34
3152 3536 1.348008 ATGGATGGTGATGGAGGCGT 61.348 55.000 0.00 0.00 0.00 5.68
3153 3537 0.179009 AATGGATGGTGATGGAGGCG 60.179 55.000 0.00 0.00 0.00 5.52
3154 3538 2.077687 AAATGGATGGTGATGGAGGC 57.922 50.000 0.00 0.00 0.00 4.70
3155 3539 3.891366 GGTAAAATGGATGGTGATGGAGG 59.109 47.826 0.00 0.00 0.00 4.30
3156 3540 4.339247 GTGGTAAAATGGATGGTGATGGAG 59.661 45.833 0.00 0.00 0.00 3.86
3157 3541 4.277476 GTGGTAAAATGGATGGTGATGGA 58.723 43.478 0.00 0.00 0.00 3.41
3158 3542 3.066621 CGTGGTAAAATGGATGGTGATGG 59.933 47.826 0.00 0.00 0.00 3.51
3159 3543 3.694072 ACGTGGTAAAATGGATGGTGATG 59.306 43.478 0.00 0.00 0.00 3.07
3160 3544 3.963129 ACGTGGTAAAATGGATGGTGAT 58.037 40.909 0.00 0.00 0.00 3.06
3161 3545 3.426787 ACGTGGTAAAATGGATGGTGA 57.573 42.857 0.00 0.00 0.00 4.02
3162 3546 4.878971 TCATACGTGGTAAAATGGATGGTG 59.121 41.667 0.00 0.00 29.59 4.17
3163 3547 5.105567 TCATACGTGGTAAAATGGATGGT 57.894 39.130 0.00 0.00 29.59 3.55
3164 3548 6.633500 ATTCATACGTGGTAAAATGGATGG 57.367 37.500 0.00 0.00 29.59 3.51
3165 3549 8.495949 GTCTATTCATACGTGGTAAAATGGATG 58.504 37.037 0.00 0.00 0.00 3.51
3166 3550 7.384115 CGTCTATTCATACGTGGTAAAATGGAT 59.616 37.037 0.00 0.00 34.48 3.41
3167 3551 6.698329 CGTCTATTCATACGTGGTAAAATGGA 59.302 38.462 0.00 0.00 34.48 3.41
3168 3552 6.698329 TCGTCTATTCATACGTGGTAAAATGG 59.302 38.462 0.00 0.00 39.99 3.16
3169 3553 7.221259 TGTCGTCTATTCATACGTGGTAAAATG 59.779 37.037 0.00 0.00 39.99 2.32
3170 3554 7.259882 TGTCGTCTATTCATACGTGGTAAAAT 58.740 34.615 0.00 0.00 39.99 1.82
3171 3555 6.619744 TGTCGTCTATTCATACGTGGTAAAA 58.380 36.000 0.00 0.00 39.99 1.52
3172 3556 6.193514 TGTCGTCTATTCATACGTGGTAAA 57.806 37.500 0.00 0.00 39.99 2.01
3173 3557 5.816449 TGTCGTCTATTCATACGTGGTAA 57.184 39.130 0.00 0.00 39.99 2.85
3174 3558 5.528320 TGATGTCGTCTATTCATACGTGGTA 59.472 40.000 0.00 0.00 39.99 3.25
3175 3559 4.337274 TGATGTCGTCTATTCATACGTGGT 59.663 41.667 0.00 0.00 39.99 4.16
3176 3560 4.855531 TGATGTCGTCTATTCATACGTGG 58.144 43.478 0.00 0.00 39.99 4.94
3177 3561 4.380087 GCTGATGTCGTCTATTCATACGTG 59.620 45.833 0.00 0.00 39.99 4.49
3178 3562 4.036380 TGCTGATGTCGTCTATTCATACGT 59.964 41.667 0.00 0.00 39.99 3.57
3179 3563 4.537015 TGCTGATGTCGTCTATTCATACG 58.463 43.478 0.00 0.00 40.40 3.06
3180 3564 5.763088 TCTGCTGATGTCGTCTATTCATAC 58.237 41.667 0.00 0.00 0.00 2.39
3181 3565 6.391227 TTCTGCTGATGTCGTCTATTCATA 57.609 37.500 0.00 0.00 0.00 2.15
3182 3566 4.926140 TCTGCTGATGTCGTCTATTCAT 57.074 40.909 0.00 0.00 0.00 2.57
3183 3567 4.718940 TTCTGCTGATGTCGTCTATTCA 57.281 40.909 0.00 0.00 0.00 2.57
3184 3568 6.595772 AATTTCTGCTGATGTCGTCTATTC 57.404 37.500 0.00 0.00 0.00 1.75
3185 3569 6.992063 AAATTTCTGCTGATGTCGTCTATT 57.008 33.333 0.00 0.00 0.00 1.73
3186 3570 6.992063 AAAATTTCTGCTGATGTCGTCTAT 57.008 33.333 0.00 0.00 0.00 1.98
3187 3571 6.801539 AAAAATTTCTGCTGATGTCGTCTA 57.198 33.333 0.00 0.00 0.00 2.59
3188 3572 5.695851 AAAAATTTCTGCTGATGTCGTCT 57.304 34.783 0.00 0.00 0.00 4.18
3208 3592 7.379098 ACATTTTTAAGCCGAAAACCAAAAA 57.621 28.000 0.00 0.00 31.65 1.94
3209 3593 6.986904 ACATTTTTAAGCCGAAAACCAAAA 57.013 29.167 0.00 0.00 0.00 2.44
3210 3594 6.986904 AACATTTTTAAGCCGAAAACCAAA 57.013 29.167 0.00 0.00 0.00 3.28
3211 3595 6.986904 AAACATTTTTAAGCCGAAAACCAA 57.013 29.167 0.00 0.00 0.00 3.67
3212 3596 6.986904 AAAACATTTTTAAGCCGAAAACCA 57.013 29.167 0.00 0.00 0.00 3.67
3213 3597 8.984764 AGATAAAACATTTTTAAGCCGAAAACC 58.015 29.630 0.00 0.00 0.00 3.27
3215 3599 9.198837 GGAGATAAAACATTTTTAAGCCGAAAA 57.801 29.630 0.00 0.00 0.00 2.29
3216 3600 8.581578 AGGAGATAAAACATTTTTAAGCCGAAA 58.418 29.630 0.00 0.00 0.00 3.46
3217 3601 8.117813 AGGAGATAAAACATTTTTAAGCCGAA 57.882 30.769 0.00 0.00 0.00 4.30
3218 3602 7.696992 AGGAGATAAAACATTTTTAAGCCGA 57.303 32.000 0.00 0.00 0.00 5.54
3219 3603 9.849166 TTTAGGAGATAAAACATTTTTAAGCCG 57.151 29.630 0.00 0.00 30.28 5.52
3251 3635 9.844257 TGGTGAAAATGGATTTTTAGTTTGATT 57.156 25.926 0.00 0.00 39.86 2.57
3253 3637 9.844257 AATGGTGAAAATGGATTTTTAGTTTGA 57.156 25.926 0.00 0.00 39.86 2.69
3260 3644 8.945057 CGGATTTAATGGTGAAAATGGATTTTT 58.055 29.630 0.00 0.00 39.86 1.94
3261 3645 8.100164 ACGGATTTAATGGTGAAAATGGATTTT 58.900 29.630 0.00 0.00 42.24 1.82
3262 3646 7.619965 ACGGATTTAATGGTGAAAATGGATTT 58.380 30.769 0.00 0.00 0.00 2.17
3263 3647 7.124147 AGACGGATTTAATGGTGAAAATGGATT 59.876 33.333 0.00 0.00 0.00 3.01
3264 3648 6.607198 AGACGGATTTAATGGTGAAAATGGAT 59.393 34.615 0.00 0.00 0.00 3.41
3265 3649 5.949354 AGACGGATTTAATGGTGAAAATGGA 59.051 36.000 0.00 0.00 0.00 3.41
3266 3650 6.207691 AGACGGATTTAATGGTGAAAATGG 57.792 37.500 0.00 0.00 0.00 3.16
3267 3651 7.273381 GTCAAGACGGATTTAATGGTGAAAATG 59.727 37.037 0.00 0.00 0.00 2.32
3268 3652 7.312899 GTCAAGACGGATTTAATGGTGAAAAT 58.687 34.615 0.00 0.00 0.00 1.82
3269 3653 6.674066 GTCAAGACGGATTTAATGGTGAAAA 58.326 36.000 0.00 0.00 0.00 2.29
3270 3654 6.249035 GTCAAGACGGATTTAATGGTGAAA 57.751 37.500 0.00 0.00 0.00 2.69
3271 3655 5.873179 GTCAAGACGGATTTAATGGTGAA 57.127 39.130 0.00 0.00 0.00 3.18
3286 3670 7.061326 GTCTAGTTTTGAAGATCTCGTCAAGAC 59.939 40.741 17.20 17.20 43.95 3.01
3287 3671 7.085116 GTCTAGTTTTGAAGATCTCGTCAAGA 58.915 38.462 9.27 3.74 43.17 3.02
3288 3672 6.309251 GGTCTAGTTTTGAAGATCTCGTCAAG 59.691 42.308 9.27 0.02 43.17 3.02
3289 3673 6.157211 GGTCTAGTTTTGAAGATCTCGTCAA 58.843 40.000 5.85 5.85 41.31 3.18
3290 3674 5.336531 GGGTCTAGTTTTGAAGATCTCGTCA 60.337 44.000 0.00 0.00 32.73 4.35
3291 3675 5.103687 GGGTCTAGTTTTGAAGATCTCGTC 58.896 45.833 0.00 0.00 0.00 4.20
3292 3676 4.081586 GGGGTCTAGTTTTGAAGATCTCGT 60.082 45.833 0.00 0.00 0.00 4.18
3293 3677 4.081642 TGGGGTCTAGTTTTGAAGATCTCG 60.082 45.833 0.00 0.00 0.00 4.04
3294 3678 5.422214 TGGGGTCTAGTTTTGAAGATCTC 57.578 43.478 0.00 0.00 0.00 2.75
3295 3679 5.251700 ACATGGGGTCTAGTTTTGAAGATCT 59.748 40.000 0.00 0.00 0.00 2.75
3296 3680 5.501156 ACATGGGGTCTAGTTTTGAAGATC 58.499 41.667 0.00 0.00 0.00 2.75
3297 3681 5.520748 ACATGGGGTCTAGTTTTGAAGAT 57.479 39.130 0.00 0.00 0.00 2.40
3298 3682 4.993705 ACATGGGGTCTAGTTTTGAAGA 57.006 40.909 0.00 0.00 0.00 2.87
3299 3683 5.070001 TCAACATGGGGTCTAGTTTTGAAG 58.930 41.667 0.00 0.00 0.00 3.02
3300 3684 5.055265 TCAACATGGGGTCTAGTTTTGAA 57.945 39.130 0.00 0.00 0.00 2.69
3301 3685 4.715534 TCAACATGGGGTCTAGTTTTGA 57.284 40.909 0.00 0.00 0.00 2.69
3302 3686 6.603201 ACATATCAACATGGGGTCTAGTTTTG 59.397 38.462 0.00 0.00 0.00 2.44
3303 3687 6.731467 ACATATCAACATGGGGTCTAGTTTT 58.269 36.000 0.00 0.00 0.00 2.43
3304 3688 6.327386 ACATATCAACATGGGGTCTAGTTT 57.673 37.500 0.00 0.00 0.00 2.66
3305 3689 5.975988 ACATATCAACATGGGGTCTAGTT 57.024 39.130 0.00 0.00 0.00 2.24
3306 3690 5.975988 AACATATCAACATGGGGTCTAGT 57.024 39.130 0.00 0.00 0.00 2.57
3307 3691 5.466728 CGAAACATATCAACATGGGGTCTAG 59.533 44.000 0.00 0.00 0.00 2.43
3308 3692 5.129650 TCGAAACATATCAACATGGGGTCTA 59.870 40.000 0.00 0.00 0.00 2.59
3309 3693 4.080582 TCGAAACATATCAACATGGGGTCT 60.081 41.667 0.00 0.00 0.00 3.85
3310 3694 4.196193 TCGAAACATATCAACATGGGGTC 58.804 43.478 0.00 0.00 0.00 4.46
3311 3695 4.229304 TCGAAACATATCAACATGGGGT 57.771 40.909 0.00 0.00 0.00 4.95
3312 3696 4.821260 TCATCGAAACATATCAACATGGGG 59.179 41.667 0.00 0.00 0.00 4.96
3313 3697 6.375945 TTCATCGAAACATATCAACATGGG 57.624 37.500 0.00 0.00 0.00 4.00
3314 3698 8.861033 ATTTTCATCGAAACATATCAACATGG 57.139 30.769 0.00 0.00 30.83 3.66
3342 3726 1.198713 TGGCAACTTCTGGGCAAAAA 58.801 45.000 0.00 0.00 36.57 1.94
3343 3727 1.070445 CATGGCAACTTCTGGGCAAAA 59.930 47.619 0.00 0.00 43.13 2.44
3344 3728 0.680618 CATGGCAACTTCTGGGCAAA 59.319 50.000 0.00 0.00 43.13 3.68
3345 3729 0.178967 TCATGGCAACTTCTGGGCAA 60.179 50.000 0.00 0.00 43.13 4.52
3346 3730 0.040058 ATCATGGCAACTTCTGGGCA 59.960 50.000 0.00 0.00 44.07 5.36
3347 3731 0.458669 CATCATGGCAACTTCTGGGC 59.541 55.000 0.00 0.00 37.61 5.36
3348 3732 1.843368 ACATCATGGCAACTTCTGGG 58.157 50.000 0.00 0.00 37.61 4.45
3349 3733 3.947910 AAACATCATGGCAACTTCTGG 57.052 42.857 0.00 0.00 37.61 3.86
3350 3734 5.048504 AGTGTAAACATCATGGCAACTTCTG 60.049 40.000 0.00 0.00 37.61 3.02
3351 3735 5.072741 AGTGTAAACATCATGGCAACTTCT 58.927 37.500 0.00 0.00 37.61 2.85
3352 3736 5.376854 AGTGTAAACATCATGGCAACTTC 57.623 39.130 0.00 0.00 37.61 3.01
3353 3737 7.829211 ACTATAGTGTAAACATCATGGCAACTT 59.171 33.333 4.10 0.00 37.61 2.66
3354 3738 7.338710 ACTATAGTGTAAACATCATGGCAACT 58.661 34.615 4.10 0.00 37.61 3.16
3355 3739 7.553881 ACTATAGTGTAAACATCATGGCAAC 57.446 36.000 4.10 0.00 0.00 4.17
3356 3740 7.415095 GCAACTATAGTGTAAACATCATGGCAA 60.415 37.037 6.06 0.00 0.00 4.52
3357 3741 6.038161 GCAACTATAGTGTAAACATCATGGCA 59.962 38.462 6.06 0.00 0.00 4.92
3358 3742 6.430451 GCAACTATAGTGTAAACATCATGGC 58.570 40.000 6.06 0.00 0.00 4.40
3359 3743 6.542005 TGGCAACTATAGTGTAAACATCATGG 59.458 38.462 6.06 0.00 37.61 3.66
3360 3744 7.552458 TGGCAACTATAGTGTAAACATCATG 57.448 36.000 6.06 0.00 37.61 3.07
3361 3745 9.494271 CTATGGCAACTATAGTGTAAACATCAT 57.506 33.333 6.06 5.36 37.61 2.45
3362 3746 8.482943 ACTATGGCAACTATAGTGTAAACATCA 58.517 33.333 6.06 0.00 38.57 3.07
3363 3747 8.765219 CACTATGGCAACTATAGTGTAAACATC 58.235 37.037 17.94 0.00 44.60 3.06
3364 3748 8.662781 CACTATGGCAACTATAGTGTAAACAT 57.337 34.615 17.94 9.47 44.60 2.71
3372 3756 7.967908 AGATTAAGCACTATGGCAACTATAGT 58.032 34.615 0.00 0.00 39.74 2.12
3373 3757 9.929180 TTAGATTAAGCACTATGGCAACTATAG 57.071 33.333 0.00 0.00 35.27 1.31
3375 3759 9.277783 CTTTAGATTAAGCACTATGGCAACTAT 57.722 33.333 0.00 0.00 35.83 2.12
3376 3760 8.265055 ACTTTAGATTAAGCACTATGGCAACTA 58.735 33.333 0.00 0.00 35.83 2.24
3377 3761 7.112779 ACTTTAGATTAAGCACTATGGCAACT 58.887 34.615 0.00 0.00 35.83 3.16
3378 3762 7.321745 ACTTTAGATTAAGCACTATGGCAAC 57.678 36.000 0.00 0.00 35.83 4.17
3379 3763 7.628366 GCAACTTTAGATTAAGCACTATGGCAA 60.628 37.037 0.00 0.00 35.83 4.52
3380 3764 6.183360 GCAACTTTAGATTAAGCACTATGGCA 60.183 38.462 0.00 0.00 35.83 4.92
3381 3765 6.202226 GCAACTTTAGATTAAGCACTATGGC 58.798 40.000 0.00 0.00 0.00 4.40
3382 3766 6.318648 TGGCAACTTTAGATTAAGCACTATGG 59.681 38.462 0.00 0.00 37.61 2.74
3383 3767 7.320443 TGGCAACTTTAGATTAAGCACTATG 57.680 36.000 0.00 0.00 37.61 2.23
3384 3768 7.557719 ACATGGCAACTTTAGATTAAGCACTAT 59.442 33.333 0.00 0.00 37.61 2.12
3385 3769 6.884295 ACATGGCAACTTTAGATTAAGCACTA 59.116 34.615 0.00 0.00 37.61 2.74
3386 3770 5.711976 ACATGGCAACTTTAGATTAAGCACT 59.288 36.000 0.00 0.00 37.61 4.40
3387 3771 5.801947 CACATGGCAACTTTAGATTAAGCAC 59.198 40.000 0.00 0.00 37.61 4.40
3388 3772 5.105797 CCACATGGCAACTTTAGATTAAGCA 60.106 40.000 0.00 0.00 37.61 3.91
3389 3773 5.343249 CCACATGGCAACTTTAGATTAAGC 58.657 41.667 0.00 0.00 37.61 3.09
3405 3789 6.686630 TCTACAAACTAAAATTGCCACATGG 58.313 36.000 0.00 0.00 38.53 3.66
3406 3790 8.028354 TGATCTACAAACTAAAATTGCCACATG 58.972 33.333 0.00 0.00 0.00 3.21
3407 3791 8.121305 TGATCTACAAACTAAAATTGCCACAT 57.879 30.769 0.00 0.00 0.00 3.21
3408 3792 7.517614 TGATCTACAAACTAAAATTGCCACA 57.482 32.000 0.00 0.00 0.00 4.17
3409 3793 7.489113 CCATGATCTACAAACTAAAATTGCCAC 59.511 37.037 0.00 0.00 0.00 5.01
3410 3794 7.546358 CCATGATCTACAAACTAAAATTGCCA 58.454 34.615 0.00 0.00 0.00 4.92
3411 3795 6.476706 GCCATGATCTACAAACTAAAATTGCC 59.523 38.462 0.00 0.00 0.00 4.52
3412 3796 7.035004 TGCCATGATCTACAAACTAAAATTGC 58.965 34.615 0.00 0.00 0.00 3.56
3413 3797 8.984891 TTGCCATGATCTACAAACTAAAATTG 57.015 30.769 0.00 0.00 0.00 2.32
3416 3800 9.995003 AAAATTGCCATGATCTACAAACTAAAA 57.005 25.926 0.00 0.00 0.00 1.52
3419 3803 9.461312 ACTAAAATTGCCATGATCTACAAACTA 57.539 29.630 0.00 0.00 0.00 2.24
3420 3804 8.353423 ACTAAAATTGCCATGATCTACAAACT 57.647 30.769 0.00 0.00 0.00 2.66
3421 3805 8.986477 AACTAAAATTGCCATGATCTACAAAC 57.014 30.769 0.00 0.00 0.00 2.93
3422 3806 9.995003 AAAACTAAAATTGCCATGATCTACAAA 57.005 25.926 0.00 0.00 0.00 2.83
3423 3807 9.995003 AAAAACTAAAATTGCCATGATCTACAA 57.005 25.926 0.00 0.00 0.00 2.41
3456 3840 3.153919 GGTCAAAGTACTGGAATTGCCA 58.846 45.455 0.00 0.00 46.96 4.92
3457 3841 3.153919 TGGTCAAAGTACTGGAATTGCC 58.846 45.455 0.00 4.17 37.10 4.52
3458 3842 4.458989 TCATGGTCAAAGTACTGGAATTGC 59.541 41.667 0.00 0.00 0.00 3.56
3459 3843 6.573664 TTCATGGTCAAAGTACTGGAATTG 57.426 37.500 0.00 0.00 0.00 2.32
3460 3844 7.595819 TTTTCATGGTCAAAGTACTGGAATT 57.404 32.000 0.00 0.00 0.00 2.17
3461 3845 7.781324 ATTTTCATGGTCAAAGTACTGGAAT 57.219 32.000 0.00 0.00 0.00 3.01
3462 3846 8.877864 ATATTTTCATGGTCAAAGTACTGGAA 57.122 30.769 0.00 0.00 0.00 3.53
3463 3847 8.877864 AATATTTTCATGGTCAAAGTACTGGA 57.122 30.769 0.00 0.00 0.00 3.86
3464 3848 9.927668 AAAATATTTTCATGGTCAAAGTACTGG 57.072 29.630 7.64 0.00 0.00 4.00
3490 3874 9.566432 ACTTAAAATTGCCATGGTTCAATAAAA 57.434 25.926 14.67 9.22 33.05 1.52
3491 3875 8.997323 CACTTAAAATTGCCATGGTTCAATAAA 58.003 29.630 14.67 9.51 33.05 1.40
3492 3876 7.118971 GCACTTAAAATTGCCATGGTTCAATAA 59.881 33.333 14.67 6.19 33.05 1.40
3493 3877 6.593382 GCACTTAAAATTGCCATGGTTCAATA 59.407 34.615 14.67 0.00 33.05 1.90
3494 3878 5.412286 GCACTTAAAATTGCCATGGTTCAAT 59.588 36.000 14.67 12.39 34.66 2.57
3495 3879 4.754114 GCACTTAAAATTGCCATGGTTCAA 59.246 37.500 14.67 10.45 32.21 2.69
3496 3880 4.202295 TGCACTTAAAATTGCCATGGTTCA 60.202 37.500 14.67 0.00 38.00 3.18
3497 3881 4.314121 TGCACTTAAAATTGCCATGGTTC 58.686 39.130 14.67 0.00 38.00 3.62
3498 3882 4.348863 TGCACTTAAAATTGCCATGGTT 57.651 36.364 14.67 1.29 38.00 3.67
3499 3883 4.255301 CATGCACTTAAAATTGCCATGGT 58.745 39.130 14.67 0.00 38.00 3.55
3500 3884 4.255301 ACATGCACTTAAAATTGCCATGG 58.745 39.130 7.63 7.63 38.00 3.66
3501 3885 6.757478 TGATACATGCACTTAAAATTGCCATG 59.243 34.615 0.00 8.43 38.00 3.66
3502 3886 6.876155 TGATACATGCACTTAAAATTGCCAT 58.124 32.000 0.00 0.00 38.00 4.40
3503 3887 6.278172 TGATACATGCACTTAAAATTGCCA 57.722 33.333 0.00 0.00 38.00 4.92
3504 3888 6.201425 CCATGATACATGCACTTAAAATTGCC 59.799 38.462 0.00 0.00 38.00 4.52
3505 3889 7.169035 CCATGATACATGCACTTAAAATTGC 57.831 36.000 0.00 0.00 39.33 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.