Multiple sequence alignment - TraesCS4B01G135000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G135000 chr4B 100.000 7576 0 0 1 7576 176259221 176266796 0.000000e+00 13991.0
1 TraesCS4B01G135000 chr4D 94.067 7281 219 102 3 7189 115940851 115933690 0.000000e+00 10855.0
2 TraesCS4B01G135000 chr4D 94.714 227 7 2 7350 7576 115933691 115933470 1.560000e-91 348.0
3 TraesCS4B01G135000 chr4A 93.808 7316 218 100 1 7189 460896260 460903467 0.000000e+00 10783.0
4 TraesCS4B01G135000 chr4A 88.157 1351 120 19 4125 5472 359894177 359895490 0.000000e+00 1572.0
5 TraesCS4B01G135000 chr4A 95.238 231 5 1 7350 7574 460903466 460903696 2.010000e-95 361.0
6 TraesCS4B01G135000 chr4A 94.350 177 9 1 7180 7356 713022014 713022189 3.480000e-68 270.0
7 TraesCS4B01G135000 chr4A 85.425 247 17 9 4023 4269 666478191 666478418 9.820000e-59 239.0
8 TraesCS4B01G135000 chr4A 88.889 72 8 0 3296 3367 711816203 711816132 1.050000e-13 89.8
9 TraesCS4B01G135000 chr4A 88.889 72 8 0 3296 3367 711864304 711864233 1.050000e-13 89.8
10 TraesCS4B01G135000 chr2B 92.832 1130 58 12 4207 5335 637454265 637453158 0.000000e+00 1616.0
11 TraesCS4B01G135000 chr2B 88.679 742 42 20 4023 4763 615568610 615567910 0.000000e+00 867.0
12 TraesCS4B01G135000 chr2B 92.734 578 40 2 4759 5335 615558840 615558264 0.000000e+00 833.0
13 TraesCS4B01G135000 chr2B 93.820 178 10 1 7180 7356 243786686 243786509 4.510000e-67 267.0
14 TraesCS4B01G135000 chr2B 84.000 200 13 8 4023 4222 637456786 637456606 2.810000e-39 174.0
15 TraesCS4B01G135000 chr6D 92.857 644 40 3 4731 5374 429405238 429404601 0.000000e+00 929.0
16 TraesCS4B01G135000 chr6D 95.192 104 5 0 5369 5472 429398506 429398403 1.690000e-36 165.0
17 TraesCS4B01G135000 chr6D 94.915 59 3 0 5369 5427 429402576 429402518 8.090000e-15 93.5
18 TraesCS4B01G135000 chr2D 88.418 354 16 12 4900 5252 582155554 582155225 3.290000e-108 403.0
19 TraesCS4B01G135000 chr2D 86.111 72 3 1 5408 5472 582155235 582155164 3.790000e-08 71.3
20 TraesCS4B01G135000 chr6B 96.450 169 6 0 7188 7356 29399883 29400051 5.790000e-71 279.0
21 TraesCS4B01G135000 chr6B 92.778 180 12 1 7188 7367 703685962 703686140 7.540000e-65 259.0
22 TraesCS4B01G135000 chr7D 95.833 168 7 0 7188 7355 99776701 99776868 9.690000e-69 272.0
23 TraesCS4B01G135000 chr7D 94.767 172 9 0 7191 7362 485741665 485741494 1.250000e-67 268.0
24 TraesCS4B01G135000 chr7D 100.000 28 0 0 1600 1627 483298414 483298441 1.400000e-02 52.8
25 TraesCS4B01G135000 chr5D 96.364 165 6 0 7187 7351 198477552 198477388 9.690000e-69 272.0
26 TraesCS4B01G135000 chr1D 94.286 175 10 0 7188 7362 315470923 315471097 1.250000e-67 268.0
27 TraesCS4B01G135000 chr1D 100.000 42 0 0 4651 4692 484187322 484187363 2.270000e-10 78.7
28 TraesCS4B01G135000 chr5B 93.296 179 10 2 7179 7356 64265801 64265978 5.830000e-66 263.0
29 TraesCS4B01G135000 chr7B 92.683 82 6 0 4707 4788 156919399 156919318 1.340000e-22 119.0
30 TraesCS4B01G135000 chr3A 95.238 63 3 0 4709 4771 157997652 157997590 4.840000e-17 100.0
31 TraesCS4B01G135000 chr3A 97.222 36 1 0 1624 1659 623053203 623053168 2.280000e-05 62.1
32 TraesCS4B01G135000 chr3A 94.286 35 2 0 1474 1508 402498542 402498508 4.000000e-03 54.7
33 TraesCS4B01G135000 chrUn 88.889 72 8 0 3296 3367 476074468 476074539 1.050000e-13 89.8
34 TraesCS4B01G135000 chr3B 82.075 106 16 3 3296 3401 749152183 749152081 3.770000e-13 87.9
35 TraesCS4B01G135000 chr3B 93.182 44 2 1 1617 1659 640067439 640067396 6.350000e-06 63.9
36 TraesCS4B01G135000 chr3D 100.000 42 0 0 4651 4692 33322996 33323037 2.270000e-10 78.7
37 TraesCS4B01G135000 chr3D 91.667 48 3 1 1613 1659 479619473 479619426 1.760000e-06 65.8
38 TraesCS4B01G135000 chr2A 100.000 28 0 0 2968 2995 770410565 770410538 1.400000e-02 52.8
39 TraesCS4B01G135000 chr1A 100.000 28 0 0 1481 1508 583261834 583261807 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G135000 chr4B 176259221 176266796 7575 False 13991.00 13991 100.0000 1 7576 1 chr4B.!!$F1 7575
1 TraesCS4B01G135000 chr4D 115933470 115940851 7381 True 5601.50 10855 94.3905 3 7576 2 chr4D.!!$R1 7573
2 TraesCS4B01G135000 chr4A 460896260 460903696 7436 False 5572.00 10783 94.5230 1 7574 2 chr4A.!!$F4 7573
3 TraesCS4B01G135000 chr4A 359894177 359895490 1313 False 1572.00 1572 88.1570 4125 5472 1 chr4A.!!$F1 1347
4 TraesCS4B01G135000 chr2B 637453158 637456786 3628 True 895.00 1616 88.4160 4023 5335 2 chr2B.!!$R4 1312
5 TraesCS4B01G135000 chr2B 615567910 615568610 700 True 867.00 867 88.6790 4023 4763 1 chr2B.!!$R3 740
6 TraesCS4B01G135000 chr2B 615558264 615558840 576 True 833.00 833 92.7340 4759 5335 1 chr2B.!!$R2 576
7 TraesCS4B01G135000 chr6D 429402518 429405238 2720 True 511.25 929 93.8860 4731 5427 2 chr6D.!!$R2 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 388 0.109342 GGAGCATGGATGGAACGGAT 59.891 55.000 0.00 0.00 0.0 4.18 F
1338 1417 0.041400 TGATGAACAACACGCGCTTG 60.041 50.000 12.94 12.94 0.0 4.01 F
1964 2071 0.242286 TTGTGTGTGTGTGTGTTGCC 59.758 50.000 0.00 0.00 0.0 4.52 F
2918 3088 1.137872 GTGCCATGTCAGTAGCTAGCT 59.862 52.381 23.12 23.12 0.0 3.32 F
4327 6863 0.603975 GGCTCGTTCTCAGGTGCTTT 60.604 55.000 0.00 0.00 0.0 3.51 F
4362 6899 1.259609 AATTCCCATGTGCACCTGTG 58.740 50.000 19.03 9.55 0.0 3.66 F
4678 7217 2.009774 GGTGCTGCTATGTTCGATGTT 58.990 47.619 0.00 0.00 0.0 2.71 F
5977 10556 2.034812 GCCCTCGAGAGTAAGTACCATG 59.965 54.545 15.71 0.00 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 2054 0.179166 CAGGCAACACACACACACAC 60.179 55.000 0.00 0.00 41.41 3.82 R
2915 3085 0.771127 TTGGAAGTTGTGGCCTAGCT 59.229 50.000 3.32 0.00 0.00 3.32 R
3217 3387 1.066918 GCAATGGCATGGCAGCTAC 59.933 57.895 27.02 12.63 40.72 3.58 R
4565 7104 0.390866 CAGTGAATGCGCAGGAGAGT 60.391 55.000 18.32 0.00 0.00 3.24 R
5472 10049 2.510613 GCCTACAAGTTTTACCAGGCA 58.489 47.619 5.57 0.00 46.27 4.75 R
6149 10728 2.777114 TCCATGCTGATTAGTAGGGCAA 59.223 45.455 1.26 0.00 39.85 4.52 R
6512 11092 1.667724 CTTAGCTCTCCACAATTGCCG 59.332 52.381 5.05 0.00 0.00 5.69 R
7333 11913 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 54 6.253013 GCAAATGAAATAATTGCAAAGGAGC 58.747 36.000 1.71 0.00 46.57 4.70
63 68 8.433421 TTGCAAAGGAGCTGTTAATATACTAC 57.567 34.615 0.00 0.00 34.99 2.73
73 78 9.956640 AGCTGTTAATATACTACGTATAGAGGT 57.043 33.333 0.00 0.00 34.96 3.85
119 127 4.024893 AGACGTTTATGACTTTGTGCACAG 60.025 41.667 20.59 12.15 0.00 3.66
168 182 9.807386 GATTGGTTAAGTTGTATAATCGTATGC 57.193 33.333 0.00 0.00 0.00 3.14
182 196 1.668919 CGTATGCAGACGGTGTCAAGT 60.669 52.381 25.46 0.00 39.19 3.16
207 221 2.191981 ACGGGGGATTAAGATGGTCT 57.808 50.000 0.00 0.00 0.00 3.85
209 223 2.172717 ACGGGGGATTAAGATGGTCTTG 59.827 50.000 2.60 0.00 37.29 3.02
213 227 2.175715 GGGATTAAGATGGTCTTGGCCT 59.824 50.000 3.32 0.00 37.29 5.19
230 248 3.084786 GGCCTGCTGAGTAGAAAAATGT 58.915 45.455 0.00 0.00 0.00 2.71
232 250 4.006319 GCCTGCTGAGTAGAAAAATGTCT 58.994 43.478 0.00 0.00 0.00 3.41
241 262 9.212641 CTGAGTAGAAAAATGTCTGATCAAAGA 57.787 33.333 0.00 0.00 0.00 2.52
255 276 9.483062 GTCTGATCAAAGAACATTTTATCTTCG 57.517 33.333 0.00 0.00 34.90 3.79
261 282 7.173218 TCAAAGAACATTTTATCTTCGACAGCT 59.827 33.333 0.00 0.00 34.90 4.24
275 296 8.357796 TCTTCGACAGCTCATAAAGAATAATG 57.642 34.615 0.00 0.00 0.00 1.90
276 297 7.439356 TCTTCGACAGCTCATAAAGAATAATGG 59.561 37.037 0.00 0.00 0.00 3.16
277 298 6.582636 TCGACAGCTCATAAAGAATAATGGT 58.417 36.000 0.00 0.00 0.00 3.55
278 299 7.047891 TCGACAGCTCATAAAGAATAATGGTT 58.952 34.615 0.00 0.00 0.00 3.67
279 300 8.201464 TCGACAGCTCATAAAGAATAATGGTTA 58.799 33.333 0.00 0.00 0.00 2.85
280 301 8.276325 CGACAGCTCATAAAGAATAATGGTTAC 58.724 37.037 0.00 0.00 0.00 2.50
281 302 8.142994 ACAGCTCATAAAGAATAATGGTTACG 57.857 34.615 0.00 0.00 0.00 3.18
283 304 8.612619 CAGCTCATAAAGAATAATGGTTACGTT 58.387 33.333 0.00 0.00 0.00 3.99
284 305 8.827677 AGCTCATAAAGAATAATGGTTACGTTC 58.172 33.333 0.00 0.00 0.00 3.95
285 306 8.827677 GCTCATAAAGAATAATGGTTACGTTCT 58.172 33.333 0.00 0.00 0.00 3.01
287 308 9.878667 TCATAAAGAATAATGGTTACGTTCTCA 57.121 29.630 0.00 0.00 0.00 3.27
288 309 9.916397 CATAAAGAATAATGGTTACGTTCTCAC 57.084 33.333 0.00 0.00 0.00 3.51
289 310 6.980051 AAGAATAATGGTTACGTTCTCACC 57.020 37.500 0.00 0.00 0.00 4.02
290 311 5.107133 AGAATAATGGTTACGTTCTCACCG 58.893 41.667 0.00 0.00 32.71 4.94
291 312 2.088950 AATGGTTACGTTCTCACCGG 57.911 50.000 0.00 0.00 32.71 5.28
292 313 0.248289 ATGGTTACGTTCTCACCGGG 59.752 55.000 6.32 0.00 32.71 5.73
317 350 6.850317 GCGGTGTAAAAACGTAAACTTTATGA 59.150 34.615 7.61 0.00 0.00 2.15
350 383 1.342275 CCCTTTGGAGCATGGATGGAA 60.342 52.381 0.00 0.00 0.00 3.53
351 384 1.753073 CCTTTGGAGCATGGATGGAAC 59.247 52.381 0.00 0.00 0.00 3.62
352 385 1.402968 CTTTGGAGCATGGATGGAACG 59.597 52.381 0.00 0.00 0.00 3.95
353 386 0.394216 TTGGAGCATGGATGGAACGG 60.394 55.000 0.00 0.00 0.00 4.44
354 387 1.271127 TGGAGCATGGATGGAACGGA 61.271 55.000 0.00 0.00 0.00 4.69
355 388 0.109342 GGAGCATGGATGGAACGGAT 59.891 55.000 0.00 0.00 0.00 4.18
356 389 1.233019 GAGCATGGATGGAACGGATG 58.767 55.000 0.00 0.00 0.00 3.51
357 390 0.179009 AGCATGGATGGAACGGATGG 60.179 55.000 0.00 0.00 0.00 3.51
358 391 0.179020 GCATGGATGGAACGGATGGA 60.179 55.000 0.00 0.00 0.00 3.41
366 403 3.334583 TGGAACGGATGGAAAAGAGAG 57.665 47.619 0.00 0.00 0.00 3.20
470 513 1.722034 AAGAGTGCAGTCAGGGAGAA 58.278 50.000 23.21 0.00 0.00 2.87
510 559 3.381272 TCTTGACAAAAGCCCTTCAAGTG 59.619 43.478 9.39 0.00 43.60 3.16
557 606 1.199615 CACCTTCTTCCTCCTCCTCC 58.800 60.000 0.00 0.00 0.00 4.30
558 607 1.097722 ACCTTCTTCCTCCTCCTCCT 58.902 55.000 0.00 0.00 0.00 3.69
594 643 6.795590 TCTTCTCTCCCTTTCTCTCTTTCTA 58.204 40.000 0.00 0.00 0.00 2.10
661 712 3.721868 GGACAAGATCCCCGGTCA 58.278 61.111 0.00 0.00 42.46 4.02
685 736 2.161855 CAACTGTGGGATTAGCAAGCA 58.838 47.619 0.00 0.00 0.00 3.91
686 737 2.557924 CAACTGTGGGATTAGCAAGCAA 59.442 45.455 0.00 0.00 0.00 3.91
694 745 3.066760 GGGATTAGCAAGCAATACACACC 59.933 47.826 0.00 0.00 0.00 4.16
898 949 2.488153 GCCCTGGTATGTTGTTTGTCTC 59.512 50.000 0.00 0.00 0.00 3.36
927 978 2.510012 TCGCTCGCATGCCTTCTG 60.510 61.111 13.15 0.00 0.00 3.02
1037 1089 1.338579 CCAGGAGCACAAAGAGTCTCC 60.339 57.143 0.00 0.00 41.22 3.71
1069 1121 0.529555 GGAGATCGAGGCAGCAAGAC 60.530 60.000 0.00 0.00 0.00 3.01
1152 1204 0.842635 GCCCTCCTCCTCATCATGTT 59.157 55.000 0.00 0.00 0.00 2.71
1234 1286 3.149981 GCCTTCTTGTAAGAGCAACCTT 58.850 45.455 2.17 0.00 36.22 3.50
1247 1316 3.891977 GAGCAACCTTTTCCCTCTTTCTT 59.108 43.478 0.00 0.00 0.00 2.52
1272 1351 3.299542 CGTGGTTTTGTTTTGTCTTGTCG 59.700 43.478 0.00 0.00 0.00 4.35
1328 1407 7.730084 TGGAAAACAATAACCATGATGAACAA 58.270 30.769 0.00 0.00 0.00 2.83
1331 1410 7.945033 AAACAATAACCATGATGAACAACAC 57.055 32.000 0.00 0.00 0.00 3.32
1334 1413 0.516877 ACCATGATGAACAACACGCG 59.483 50.000 3.53 3.53 0.00 6.01
1338 1417 0.041400 TGATGAACAACACGCGCTTG 60.041 50.000 12.94 12.94 0.00 4.01
1339 1418 0.725784 GATGAACAACACGCGCTTGG 60.726 55.000 18.82 3.71 0.00 3.61
1340 1419 2.725815 GAACAACACGCGCTTGGC 60.726 61.111 18.82 8.60 38.69 4.52
1342 1421 3.468266 AACAACACGCGCTTGGCTG 62.468 57.895 18.82 16.16 40.44 4.85
1357 1436 1.614903 TGGCTGTTCAAGATTTGGCAG 59.385 47.619 0.00 8.71 37.23 4.85
1361 1440 3.854784 GCTGTTCAAGATTTGGCAGACAC 60.855 47.826 13.98 0.00 36.72 3.67
1471 1558 1.073216 GTCGATCCTGTGTGCGTCTG 61.073 60.000 0.00 0.00 0.00 3.51
1472 1559 1.080501 CGATCCTGTGTGCGTCTGT 60.081 57.895 0.00 0.00 0.00 3.41
1479 1566 2.094700 CCTGTGTGCGTCTGTATACACT 60.095 50.000 0.08 0.00 42.80 3.55
1487 1574 5.399596 GTGCGTCTGTATACACTCATACATG 59.600 44.000 0.08 0.00 39.89 3.21
1488 1575 4.383052 GCGTCTGTATACACTCATACATGC 59.617 45.833 0.08 0.00 39.89 4.06
1489 1576 5.519722 CGTCTGTATACACTCATACATGCA 58.480 41.667 0.08 0.00 39.89 3.96
1490 1577 6.152379 CGTCTGTATACACTCATACATGCAT 58.848 40.000 0.08 0.00 39.89 3.96
1491 1578 7.305474 CGTCTGTATACACTCATACATGCATA 58.695 38.462 0.08 0.00 39.89 3.14
1492 1579 7.271438 CGTCTGTATACACTCATACATGCATAC 59.729 40.741 0.08 0.00 39.89 2.39
1493 1580 8.082242 GTCTGTATACACTCATACATGCATACA 58.918 37.037 0.08 0.00 39.89 2.29
1494 1581 8.806146 TCTGTATACACTCATACATGCATACAT 58.194 33.333 0.08 0.00 39.89 2.29
1581 1671 1.008194 GTGACGGTCTGTACGTGCA 60.008 57.895 6.10 6.10 45.68 4.57
1615 1705 4.824515 ACGGAGGAGGAGGAGGCG 62.825 72.222 0.00 0.00 0.00 5.52
1828 1924 3.452627 ACACCTCTCTCTCTCTCTCTCTC 59.547 52.174 0.00 0.00 0.00 3.20
1829 1925 3.708631 CACCTCTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
1830 1926 3.708631 ACCTCTCTCTCTCTCTCTCTCTG 59.291 52.174 0.00 0.00 0.00 3.35
1831 1927 3.494048 CCTCTCTCTCTCTCTCTCTCTGC 60.494 56.522 0.00 0.00 0.00 4.26
1832 1928 2.101415 TCTCTCTCTCTCTCTCTCTGCG 59.899 54.545 0.00 0.00 0.00 5.18
1833 1929 1.831106 TCTCTCTCTCTCTCTCTGCGT 59.169 52.381 0.00 0.00 0.00 5.24
1834 1930 1.935873 CTCTCTCTCTCTCTCTGCGTG 59.064 57.143 0.00 0.00 0.00 5.34
1835 1931 1.277842 TCTCTCTCTCTCTCTGCGTGT 59.722 52.381 0.00 0.00 0.00 4.49
1836 1932 2.083774 CTCTCTCTCTCTCTGCGTGTT 58.916 52.381 0.00 0.00 0.00 3.32
1837 1933 2.487762 CTCTCTCTCTCTCTGCGTGTTT 59.512 50.000 0.00 0.00 0.00 2.83
1838 1934 2.486203 TCTCTCTCTCTCTGCGTGTTTC 59.514 50.000 0.00 0.00 0.00 2.78
1839 1935 2.487762 CTCTCTCTCTCTGCGTGTTTCT 59.512 50.000 0.00 0.00 0.00 2.52
1840 1936 2.486203 TCTCTCTCTCTGCGTGTTTCTC 59.514 50.000 0.00 0.00 0.00 2.87
1841 1937 2.487762 CTCTCTCTCTGCGTGTTTCTCT 59.512 50.000 0.00 0.00 0.00 3.10
1842 1938 2.486203 TCTCTCTCTGCGTGTTTCTCTC 59.514 50.000 0.00 0.00 0.00 3.20
1843 1939 2.487762 CTCTCTCTGCGTGTTTCTCTCT 59.512 50.000 0.00 0.00 0.00 3.10
1890 1997 1.671054 GCTGCGAGCCACTTTACCA 60.671 57.895 0.00 0.00 34.48 3.25
1949 2056 3.348236 GCAGGAGTGGCAGTTGTG 58.652 61.111 0.00 0.00 0.00 3.33
1964 2071 0.242286 TTGTGTGTGTGTGTGTTGCC 59.758 50.000 0.00 0.00 0.00 4.52
2009 2132 3.965470 TGGACCATGGTACTAGCTAGA 57.035 47.619 27.59 2.49 0.00 2.43
2025 2148 8.481492 ACTAGCTAGATAGAGTAGTGAGTGTA 57.519 38.462 27.45 0.00 0.00 2.90
2067 2200 4.355720 TCTGGCTTGGCTGGCTGG 62.356 66.667 2.00 0.00 33.51 4.85
2077 2210 3.400928 CTGGCTGGCTGGCTCTCT 61.401 66.667 18.27 0.00 42.34 3.10
2236 2369 3.691118 CACTTCACCTCTCTCTCTCTCTG 59.309 52.174 0.00 0.00 0.00 3.35
2237 2370 2.418368 TCACCTCTCTCTCTCTCTGC 57.582 55.000 0.00 0.00 0.00 4.26
2238 2371 1.915489 TCACCTCTCTCTCTCTCTGCT 59.085 52.381 0.00 0.00 0.00 4.24
2239 2372 2.019249 CACCTCTCTCTCTCTCTGCTG 58.981 57.143 0.00 0.00 0.00 4.41
2240 2373 1.635487 ACCTCTCTCTCTCTCTGCTGT 59.365 52.381 0.00 0.00 0.00 4.40
2241 2374 2.041620 ACCTCTCTCTCTCTCTGCTGTT 59.958 50.000 0.00 0.00 0.00 3.16
2242 2375 2.424601 CCTCTCTCTCTCTCTGCTGTTG 59.575 54.545 0.00 0.00 0.00 3.33
2243 2376 1.818060 TCTCTCTCTCTCTGCTGTTGC 59.182 52.381 0.00 0.00 40.20 4.17
2254 2387 2.337532 CTGTTGCCTGTTGCCTGC 59.662 61.111 0.00 0.00 40.16 4.85
2280 2413 2.190538 TGCATGTCTTGATCTCCTCCA 58.809 47.619 0.00 0.00 0.00 3.86
2465 2598 3.490896 CCGTATCATCATTCAAGGACACG 59.509 47.826 0.00 0.00 0.00 4.49
2466 2599 4.112634 CGTATCATCATTCAAGGACACGT 58.887 43.478 0.00 0.00 0.00 4.49
2467 2600 5.278604 CGTATCATCATTCAAGGACACGTA 58.721 41.667 0.00 0.00 0.00 3.57
2490 2623 3.813529 ACGTACTGCAGCAAAAAGATC 57.186 42.857 15.27 0.00 0.00 2.75
2543 2696 6.512297 ACTGTTCTTCACTGTGTTTGTTTTT 58.488 32.000 7.79 0.00 36.27 1.94
2644 2797 1.202568 TCATCGGATCATCACCAGCAC 60.203 52.381 0.00 0.00 0.00 4.40
2687 2840 2.811410 TGGTAGGATTAGTCACCGTGT 58.189 47.619 0.00 0.00 33.55 4.49
2689 2842 3.022406 GGTAGGATTAGTCACCGTGTCT 58.978 50.000 3.74 3.74 0.00 3.41
2725 2878 1.449726 TTTCACAGCAGCAGCACCAG 61.450 55.000 3.17 0.00 45.49 4.00
2759 2925 6.609212 ACTCTACCACTGTGAATGATCATACT 59.391 38.462 9.04 0.00 38.01 2.12
2760 2926 7.043961 TCTACCACTGTGAATGATCATACTC 57.956 40.000 9.04 4.48 38.01 2.59
2915 3085 1.482182 CTGGTGCCATGTCAGTAGCTA 59.518 52.381 0.00 0.00 0.00 3.32
2916 3086 1.482182 TGGTGCCATGTCAGTAGCTAG 59.518 52.381 0.00 0.00 0.00 3.42
2917 3087 1.576356 GTGCCATGTCAGTAGCTAGC 58.424 55.000 6.62 6.62 0.00 3.42
2918 3088 1.137872 GTGCCATGTCAGTAGCTAGCT 59.862 52.381 23.12 23.12 0.00 3.32
3171 3341 2.768253 TCCATTCTAGGCACACACAG 57.232 50.000 0.00 0.00 0.00 3.66
3217 3387 8.270080 TGTAGAGGATATGTTAGATTAGAGCG 57.730 38.462 0.00 0.00 0.00 5.03
3275 3445 2.173356 TGATGCAATAGGAGACAAGGGG 59.827 50.000 0.00 0.00 0.00 4.79
3327 3498 2.094675 CTGTGGCCTCAATTAGTTGGG 58.905 52.381 9.14 0.00 35.99 4.12
3496 3668 6.817765 AATTAATCCACGCTTCTTTCTCAA 57.182 33.333 0.00 0.00 0.00 3.02
3978 4158 2.753029 GACAGGACTGGCAAGGCT 59.247 61.111 0.00 0.00 38.82 4.58
4010 4190 6.202954 CCAAAGGTACCATCGAAATCTATGTC 59.797 42.308 15.94 0.00 0.00 3.06
4079 4259 2.689658 TGAGTTCTTCTCCCTTGGTGA 58.310 47.619 0.00 0.00 42.12 4.02
4122 4302 1.886777 GCAGAATCGAGAGGCTGCC 60.887 63.158 11.65 11.65 45.92 4.85
4327 6863 0.603975 GGCTCGTTCTCAGGTGCTTT 60.604 55.000 0.00 0.00 0.00 3.51
4357 6894 2.094675 ACAGCTAATTCCCATGTGCAC 58.905 47.619 10.75 10.75 0.00 4.57
4358 6895 1.406539 CAGCTAATTCCCATGTGCACC 59.593 52.381 15.69 0.00 0.00 5.01
4359 6896 1.285962 AGCTAATTCCCATGTGCACCT 59.714 47.619 15.69 0.23 0.00 4.00
4360 6897 1.406539 GCTAATTCCCATGTGCACCTG 59.593 52.381 15.69 15.04 0.00 4.00
4361 6898 2.726821 CTAATTCCCATGTGCACCTGT 58.273 47.619 19.03 4.69 0.00 4.00
4362 6899 1.259609 AATTCCCATGTGCACCTGTG 58.740 50.000 19.03 9.55 0.00 3.66
4393 6930 8.645814 ATCCTGTGCATATATGATCACAAAAT 57.354 30.769 17.10 13.07 38.74 1.82
4565 7104 5.163184 TGTGTAAAGTCAACCCCAGTATCAA 60.163 40.000 0.00 0.00 0.00 2.57
4606 7145 5.192927 TGATTAGAATGTGTGGTGGGAATC 58.807 41.667 0.00 0.00 0.00 2.52
4678 7217 2.009774 GGTGCTGCTATGTTCGATGTT 58.990 47.619 0.00 0.00 0.00 2.71
5075 7622 3.308530 CGAATTGCCAAACAAACTCTCC 58.691 45.455 0.00 0.00 42.86 3.71
5378 9955 2.676342 GGCTTTGTCATACAGGTAACCG 59.324 50.000 0.00 0.00 37.17 4.44
5472 10049 6.712095 TCAAATTTGTAGATGAGCAGTGAAGT 59.288 34.615 17.47 0.00 0.00 3.01
5635 10212 7.907214 AGTACTTCCACTAATAGTGCAAAAG 57.093 36.000 14.60 16.97 44.63 2.27
5640 10217 9.686683 ACTTCCACTAATAGTGCAAAAGATAAT 57.313 29.630 23.05 8.32 44.63 1.28
5813 10392 8.233868 TGTACTAAAACAACATATGTGACATGC 58.766 33.333 9.63 0.00 42.99 4.06
5976 10555 2.308690 GCCCTCGAGAGTAAGTACCAT 58.691 52.381 15.71 0.00 0.00 3.55
5977 10556 2.034812 GCCCTCGAGAGTAAGTACCATG 59.965 54.545 15.71 0.00 0.00 3.66
6020 10599 7.222031 CCTGTGGTTAGTTTTCTTTTGCTAAAC 59.778 37.037 0.00 0.00 33.21 2.01
6368 10948 8.390921 TCTGTTTCTTTTCCCTAGGATATGTTT 58.609 33.333 11.48 0.00 0.00 2.83
6549 11129 1.191535 AAGCATTGCAGCACATCCAT 58.808 45.000 11.91 0.00 36.85 3.41
6818 11398 7.556275 GGACACCCAGAGTTCATTATTGAAATA 59.444 37.037 1.74 0.00 43.29 1.40
6902 11482 6.061441 CCATGCACCACTACCAAAATATCTA 58.939 40.000 0.00 0.00 0.00 1.98
6935 11515 5.669477 AGGTGAGCTATCTGACAGAATTTC 58.331 41.667 9.70 6.04 0.00 2.17
6936 11516 5.188555 AGGTGAGCTATCTGACAGAATTTCA 59.811 40.000 9.70 8.45 0.00 2.69
7189 11769 3.388350 GGTTCAAGCAGGCTAGTACCTAT 59.612 47.826 0.00 0.00 38.26 2.57
7190 11770 4.141688 GGTTCAAGCAGGCTAGTACCTATT 60.142 45.833 0.00 0.00 38.26 1.73
7191 11771 4.939052 TCAAGCAGGCTAGTACCTATTC 57.061 45.455 0.00 0.00 38.26 1.75
7192 11772 3.641906 TCAAGCAGGCTAGTACCTATTCC 59.358 47.826 0.00 0.00 38.26 3.01
7193 11773 2.610873 AGCAGGCTAGTACCTATTCCC 58.389 52.381 0.00 0.00 38.26 3.97
7194 11774 2.180308 AGCAGGCTAGTACCTATTCCCT 59.820 50.000 0.00 0.00 38.26 4.20
7195 11775 2.563620 GCAGGCTAGTACCTATTCCCTC 59.436 54.545 0.00 0.00 38.26 4.30
7196 11776 3.166679 CAGGCTAGTACCTATTCCCTCC 58.833 54.545 0.00 0.00 38.26 4.30
7197 11777 2.169330 GGCTAGTACCTATTCCCTCCG 58.831 57.143 0.00 0.00 0.00 4.63
7198 11778 2.490535 GGCTAGTACCTATTCCCTCCGT 60.491 54.545 0.00 0.00 0.00 4.69
7199 11779 3.229293 GCTAGTACCTATTCCCTCCGTT 58.771 50.000 0.00 0.00 0.00 4.44
7200 11780 3.255395 GCTAGTACCTATTCCCTCCGTTC 59.745 52.174 0.00 0.00 0.00 3.95
7201 11781 2.675583 AGTACCTATTCCCTCCGTTCC 58.324 52.381 0.00 0.00 0.00 3.62
7202 11782 1.690893 GTACCTATTCCCTCCGTTCCC 59.309 57.143 0.00 0.00 0.00 3.97
7203 11783 0.043637 ACCTATTCCCTCCGTTCCCA 59.956 55.000 0.00 0.00 0.00 4.37
7204 11784 1.209621 CCTATTCCCTCCGTTCCCAA 58.790 55.000 0.00 0.00 0.00 4.12
7205 11785 1.562475 CCTATTCCCTCCGTTCCCAAA 59.438 52.381 0.00 0.00 0.00 3.28
7206 11786 2.174854 CCTATTCCCTCCGTTCCCAAAT 59.825 50.000 0.00 0.00 0.00 2.32
7207 11787 3.393278 CCTATTCCCTCCGTTCCCAAATA 59.607 47.826 0.00 0.00 0.00 1.40
7208 11788 4.042934 CCTATTCCCTCCGTTCCCAAATAT 59.957 45.833 0.00 0.00 0.00 1.28
7209 11789 4.536295 ATTCCCTCCGTTCCCAAATATT 57.464 40.909 0.00 0.00 0.00 1.28
7210 11790 4.325084 TTCCCTCCGTTCCCAAATATTT 57.675 40.909 0.00 0.00 0.00 1.40
7211 11791 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
7212 11792 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
7213 11793 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
7214 11794 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
7215 11795 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
7216 11796 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
7217 11797 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
7218 11798 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
7219 11799 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
7220 11800 7.666388 TCCGTTCCCAAATATTTGTCTTTCTAA 59.334 33.333 23.24 7.04 36.45 2.10
7221 11801 8.301002 CCGTTCCCAAATATTTGTCTTTCTAAA 58.699 33.333 23.24 6.21 36.45 1.85
7222 11802 9.341899 CGTTCCCAAATATTTGTCTTTCTAAAG 57.658 33.333 23.24 7.00 36.45 1.85
7236 11816 9.559732 TGTCTTTCTAAAGATTTCATCAAGTGA 57.440 29.630 8.31 0.00 45.83 3.41
7237 11817 9.818796 GTCTTTCTAAAGATTTCATCAAGTGAC 57.181 33.333 8.31 0.00 45.83 3.67
7238 11818 9.784531 TCTTTCTAAAGATTTCATCAAGTGACT 57.215 29.630 1.00 0.00 39.95 3.41
7241 11821 9.996554 TTCTAAAGATTTCATCAAGTGACTACA 57.003 29.630 0.00 0.00 36.32 2.74
7245 11825 7.993821 AGATTTCATCAAGTGACTACATACG 57.006 36.000 0.00 0.00 36.32 3.06
7246 11826 7.772166 AGATTTCATCAAGTGACTACATACGA 58.228 34.615 0.00 0.00 36.32 3.43
7247 11827 8.251026 AGATTTCATCAAGTGACTACATACGAA 58.749 33.333 0.00 0.00 36.32 3.85
7248 11828 7.812309 TTTCATCAAGTGACTACATACGAAG 57.188 36.000 0.00 0.00 36.32 3.79
7249 11829 5.340803 TCATCAAGTGACTACATACGAAGC 58.659 41.667 0.00 0.00 0.00 3.86
7250 11830 4.776795 TCAAGTGACTACATACGAAGCA 57.223 40.909 0.00 0.00 0.00 3.91
7251 11831 5.128992 TCAAGTGACTACATACGAAGCAA 57.871 39.130 0.00 0.00 0.00 3.91
7252 11832 5.534407 TCAAGTGACTACATACGAAGCAAA 58.466 37.500 0.00 0.00 0.00 3.68
7253 11833 5.986741 TCAAGTGACTACATACGAAGCAAAA 59.013 36.000 0.00 0.00 0.00 2.44
7254 11834 6.649141 TCAAGTGACTACATACGAAGCAAAAT 59.351 34.615 0.00 0.00 0.00 1.82
7255 11835 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
7256 11836 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
7257 11837 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
7258 11838 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
7259 11839 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
7260 11840 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
7261 11841 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
7262 11842 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
7263 11843 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
7264 11844 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
7265 11845 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
7266 11846 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
7267 11847 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
7268 11848 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
7306 11886 4.438148 CATACATCCGTATGTTGTGTCCA 58.562 43.478 0.00 0.00 46.70 4.02
7307 11887 3.627395 ACATCCGTATGTTGTGTCCAT 57.373 42.857 0.00 0.00 44.07 3.41
7308 11888 3.950397 ACATCCGTATGTTGTGTCCATT 58.050 40.909 0.00 0.00 44.07 3.16
7309 11889 4.331968 ACATCCGTATGTTGTGTCCATTT 58.668 39.130 0.00 0.00 44.07 2.32
7310 11890 4.155826 ACATCCGTATGTTGTGTCCATTTG 59.844 41.667 0.00 0.00 44.07 2.32
7311 11891 4.009370 TCCGTATGTTGTGTCCATTTGA 57.991 40.909 0.00 0.00 0.00 2.69
7312 11892 4.390264 TCCGTATGTTGTGTCCATTTGAA 58.610 39.130 0.00 0.00 0.00 2.69
7313 11893 4.822350 TCCGTATGTTGTGTCCATTTGAAA 59.178 37.500 0.00 0.00 0.00 2.69
7314 11894 5.475220 TCCGTATGTTGTGTCCATTTGAAAT 59.525 36.000 0.00 0.00 0.00 2.17
7315 11895 5.572511 CCGTATGTTGTGTCCATTTGAAATG 59.427 40.000 10.84 10.84 0.00 2.32
7316 11896 5.060816 CGTATGTTGTGTCCATTTGAAATGC 59.939 40.000 12.26 0.87 0.00 3.56
7317 11897 3.726607 TGTTGTGTCCATTTGAAATGCC 58.273 40.909 12.26 5.75 0.00 4.40
7318 11898 3.387374 TGTTGTGTCCATTTGAAATGCCT 59.613 39.130 12.26 0.00 0.00 4.75
7319 11899 4.586421 TGTTGTGTCCATTTGAAATGCCTA 59.414 37.500 12.26 0.00 0.00 3.93
7320 11900 5.163513 GTTGTGTCCATTTGAAATGCCTAG 58.836 41.667 12.26 0.00 0.00 3.02
7321 11901 4.661222 TGTGTCCATTTGAAATGCCTAGA 58.339 39.130 12.26 1.83 0.00 2.43
7322 11902 5.076182 TGTGTCCATTTGAAATGCCTAGAA 58.924 37.500 12.26 0.00 0.00 2.10
7323 11903 5.538053 TGTGTCCATTTGAAATGCCTAGAAA 59.462 36.000 12.26 0.00 0.00 2.52
7324 11904 6.095377 GTGTCCATTTGAAATGCCTAGAAAG 58.905 40.000 12.26 0.00 0.00 2.62
7325 11905 6.009589 TGTCCATTTGAAATGCCTAGAAAGA 58.990 36.000 12.26 0.00 0.00 2.52
7326 11906 6.071952 TGTCCATTTGAAATGCCTAGAAAGAC 60.072 38.462 12.26 11.27 0.00 3.01
7327 11907 6.009589 TCCATTTGAAATGCCTAGAAAGACA 58.990 36.000 12.26 0.00 0.00 3.41
7328 11908 6.493115 TCCATTTGAAATGCCTAGAAAGACAA 59.507 34.615 12.26 0.00 0.00 3.18
7329 11909 7.015098 TCCATTTGAAATGCCTAGAAAGACAAA 59.985 33.333 12.26 0.00 0.00 2.83
7330 11910 7.820872 CCATTTGAAATGCCTAGAAAGACAAAT 59.179 33.333 12.26 0.00 36.38 2.32
7331 11911 9.859427 CATTTGAAATGCCTAGAAAGACAAATA 57.141 29.630 4.82 0.00 34.96 1.40
7335 11915 9.859427 TGAAATGCCTAGAAAGACAAATATTTG 57.141 29.630 23.60 23.60 43.62 2.32
7336 11916 9.305925 GAAATGCCTAGAAAGACAAATATTTGG 57.694 33.333 27.43 12.85 42.34 3.28
7337 11917 6.773976 TGCCTAGAAAGACAAATATTTGGG 57.226 37.500 27.43 18.18 42.34 4.12
7338 11918 6.489603 TGCCTAGAAAGACAAATATTTGGGA 58.510 36.000 27.43 8.88 42.34 4.37
7339 11919 6.951198 TGCCTAGAAAGACAAATATTTGGGAA 59.049 34.615 27.43 11.57 42.34 3.97
7340 11920 7.093945 TGCCTAGAAAGACAAATATTTGGGAAC 60.094 37.037 27.43 16.80 42.34 3.62
7341 11921 7.472543 CCTAGAAAGACAAATATTTGGGAACG 58.527 38.462 27.43 6.31 42.34 3.95
7342 11922 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
7343 11923 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
7344 11924 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
7345 11925 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
7346 11926 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
7347 11927 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
7348 11928 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
7349 11929 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
7350 11930 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
7359 11939 3.399440 ACGGAGGGAGTAGATAGTACG 57.601 52.381 0.00 0.00 0.00 3.67
7455 12041 5.932303 TGAGGATAAGTTCAAGTTTCTTCCG 59.068 40.000 0.00 0.00 0.00 4.30
7477 12063 6.646240 TCCGTTATAAACCAAAGTGTACACTC 59.354 38.462 28.04 10.43 41.58 3.51
7489 12075 3.527533 GTGTACACTCCACAACACTGAA 58.472 45.455 18.92 0.00 39.27 3.02
7551 12137 6.355928 CACACATACATTGAACAAACACGTAC 59.644 38.462 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.971527 TGCAATTATTTCATTTGCTTGAGG 57.028 33.333 8.17 0.00 44.62 3.86
63 68 7.094720 CCTTATGTGAAGACCTACCTCTATACG 60.095 44.444 0.00 0.00 0.00 3.06
68 73 4.949121 ACCTTATGTGAAGACCTACCTCT 58.051 43.478 0.00 0.00 0.00 3.69
69 74 5.187186 TCAACCTTATGTGAAGACCTACCTC 59.813 44.000 0.00 0.00 0.00 3.85
71 76 5.176592 GTCAACCTTATGTGAAGACCTACC 58.823 45.833 0.00 0.00 0.00 3.18
72 77 5.790593 TGTCAACCTTATGTGAAGACCTAC 58.209 41.667 0.00 0.00 0.00 3.18
73 78 6.269077 TCTTGTCAACCTTATGTGAAGACCTA 59.731 38.462 0.00 0.00 0.00 3.08
119 127 4.084849 CGGATAATCACGAGACATTTCAGC 60.085 45.833 0.00 0.00 0.00 4.26
168 182 3.181774 CGTTTAGAACTTGACACCGTCTG 59.818 47.826 0.00 0.00 33.15 3.51
182 196 4.475747 ACCATCTTAATCCCCCGTTTAGAA 59.524 41.667 0.00 0.00 0.00 2.10
207 221 2.949177 TTTTCTACTCAGCAGGCCAA 57.051 45.000 5.01 0.00 0.00 4.52
209 223 3.084786 ACATTTTTCTACTCAGCAGGCC 58.915 45.455 0.00 0.00 0.00 5.19
213 227 6.466812 TGATCAGACATTTTTCTACTCAGCA 58.533 36.000 0.00 0.00 0.00 4.41
230 248 9.435688 TCGAAGATAAAATGTTCTTTGATCAGA 57.564 29.630 0.00 0.00 37.42 3.27
232 250 8.998377 TGTCGAAGATAAAATGTTCTTTGATCA 58.002 29.630 6.03 0.00 41.86 2.92
241 262 6.992063 ATGAGCTGTCGAAGATAAAATGTT 57.008 33.333 0.00 0.00 40.67 2.71
245 266 8.771920 TTCTTTATGAGCTGTCGAAGATAAAA 57.228 30.769 0.00 0.00 40.67 1.52
246 267 8.948631 ATTCTTTATGAGCTGTCGAAGATAAA 57.051 30.769 0.00 0.00 40.67 1.40
249 270 8.986847 CATTATTCTTTATGAGCTGTCGAAGAT 58.013 33.333 0.00 0.00 40.67 2.40
255 276 8.276325 CGTAACCATTATTCTTTATGAGCTGTC 58.724 37.037 0.00 0.00 0.00 3.51
261 282 9.878667 TGAGAACGTAACCATTATTCTTTATGA 57.121 29.630 0.00 0.00 29.85 2.15
272 293 1.338389 CCCGGTGAGAACGTAACCATT 60.338 52.381 0.00 0.00 33.30 3.16
273 294 0.248289 CCCGGTGAGAACGTAACCAT 59.752 55.000 0.00 0.00 33.30 3.55
274 295 1.667151 CCCGGTGAGAACGTAACCA 59.333 57.895 0.00 0.00 33.30 3.67
275 296 1.739196 GCCCGGTGAGAACGTAACC 60.739 63.158 0.00 0.00 0.00 2.85
276 297 2.090524 CGCCCGGTGAGAACGTAAC 61.091 63.158 0.00 0.00 0.00 2.50
277 298 2.259204 CGCCCGGTGAGAACGTAA 59.741 61.111 0.00 0.00 0.00 3.18
278 299 3.751246 CCGCCCGGTGAGAACGTA 61.751 66.667 0.00 0.00 0.00 3.57
288 309 0.948141 TACGTTTTTACACCGCCCGG 60.948 55.000 4.96 4.96 42.03 5.73
289 310 0.864455 TTACGTTTTTACACCGCCCG 59.136 50.000 0.00 0.00 0.00 6.13
290 311 2.290367 AGTTTACGTTTTTACACCGCCC 59.710 45.455 0.00 0.00 0.00 6.13
291 312 3.607422 AGTTTACGTTTTTACACCGCC 57.393 42.857 0.00 0.00 0.00 6.13
292 313 6.850317 TCATAAAGTTTACGTTTTTACACCGC 59.150 34.615 0.00 0.00 0.00 5.68
317 350 4.202253 GCTCCAAAGGGTTCAAAGAATGTT 60.202 41.667 0.00 0.00 34.93 2.71
350 383 2.821437 TCTCCTCTCTTTTCCATCCGT 58.179 47.619 0.00 0.00 0.00 4.69
351 384 3.431486 CCTTCTCCTCTCTTTTCCATCCG 60.431 52.174 0.00 0.00 0.00 4.18
352 385 3.118075 CCCTTCTCCTCTCTTTTCCATCC 60.118 52.174 0.00 0.00 0.00 3.51
353 386 3.684130 GCCCTTCTCCTCTCTTTTCCATC 60.684 52.174 0.00 0.00 0.00 3.51
354 387 2.240921 GCCCTTCTCCTCTCTTTTCCAT 59.759 50.000 0.00 0.00 0.00 3.41
355 388 1.630878 GCCCTTCTCCTCTCTTTTCCA 59.369 52.381 0.00 0.00 0.00 3.53
356 389 1.912731 AGCCCTTCTCCTCTCTTTTCC 59.087 52.381 0.00 0.00 0.00 3.13
357 390 2.355615 CCAGCCCTTCTCCTCTCTTTTC 60.356 54.545 0.00 0.00 0.00 2.29
358 391 1.632920 CCAGCCCTTCTCCTCTCTTTT 59.367 52.381 0.00 0.00 0.00 2.27
366 403 1.225704 CCATGTCCAGCCCTTCTCC 59.774 63.158 0.00 0.00 0.00 3.71
470 513 3.914551 AAGCCACCCTCGCTCTCCT 62.915 63.158 0.00 0.00 34.84 3.69
510 559 2.822697 AGAGTAGGGGGTCTTGTCTTC 58.177 52.381 0.00 0.00 0.00 2.87
557 606 4.884164 GGGAGAGAAGAAAGAGAGAGAGAG 59.116 50.000 0.00 0.00 0.00 3.20
558 607 4.540099 AGGGAGAGAAGAAAGAGAGAGAGA 59.460 45.833 0.00 0.00 0.00 3.10
594 643 5.047377 GGTCTCTCTCTTGAACTGTGAAGAT 60.047 44.000 3.71 0.00 0.00 2.40
659 710 3.519107 TGCTAATCCCACAGTTGAGATGA 59.481 43.478 0.00 0.00 0.00 2.92
661 712 4.521146 CTTGCTAATCCCACAGTTGAGAT 58.479 43.478 0.00 0.00 0.00 2.75
685 736 2.070399 TTGTGGGGCGGGTGTGTATT 62.070 55.000 0.00 0.00 0.00 1.89
686 737 2.478335 CTTGTGGGGCGGGTGTGTAT 62.478 60.000 0.00 0.00 0.00 2.29
898 949 1.361993 CGAGCGAGGAAGAGGATGG 59.638 63.158 0.00 0.00 0.00 3.51
927 978 6.936279 TGCCTATATATCTACCTCAGCAAAC 58.064 40.000 0.00 0.00 0.00 2.93
1037 1089 1.710816 GATCTCCCACTCCCAGTAGG 58.289 60.000 0.00 0.00 0.00 3.18
1054 1106 1.731720 GAAAGTCTTGCTGCCTCGAT 58.268 50.000 0.00 0.00 0.00 3.59
1069 1121 0.737715 CTCGACCTCCAAGCCGAAAG 60.738 60.000 0.00 0.00 0.00 2.62
1152 1204 1.153168 GAAGCCGCCATAGCCAAGA 60.153 57.895 0.00 0.00 34.57 3.02
1234 1286 2.171870 ACCACGACAAGAAAGAGGGAAA 59.828 45.455 0.00 0.00 0.00 3.13
1247 1316 4.230657 CAAGACAAAACAAAACCACGACA 58.769 39.130 0.00 0.00 0.00 4.35
1272 1351 4.470334 AAGAAGCAGAAGAGAGATGACC 57.530 45.455 0.00 0.00 0.00 4.02
1328 1407 3.649986 GAACAGCCAAGCGCGTGT 61.650 61.111 21.67 9.29 44.76 4.49
1331 1410 1.915614 ATCTTGAACAGCCAAGCGCG 61.916 55.000 0.00 0.00 44.76 6.86
1334 1413 2.680577 CCAAATCTTGAACAGCCAAGC 58.319 47.619 0.00 0.00 42.34 4.01
1338 1417 1.888512 TCTGCCAAATCTTGAACAGCC 59.111 47.619 5.15 0.00 35.75 4.85
1339 1418 2.294233 TGTCTGCCAAATCTTGAACAGC 59.706 45.455 5.15 0.00 35.75 4.40
1340 1419 3.607775 CGTGTCTGCCAAATCTTGAACAG 60.608 47.826 0.00 0.00 36.55 3.16
1342 1421 2.548057 TCGTGTCTGCCAAATCTTGAAC 59.452 45.455 0.00 0.00 0.00 3.18
1488 1575 9.828039 AGATTCCTATGTATGTATGCATGTATG 57.172 33.333 10.16 0.00 36.58 2.39
1491 1578 9.224267 GAAAGATTCCTATGTATGTATGCATGT 57.776 33.333 10.16 0.00 36.58 3.21
1492 1579 9.445878 AGAAAGATTCCTATGTATGTATGCATG 57.554 33.333 10.16 0.00 36.58 4.06
1493 1580 9.445878 CAGAAAGATTCCTATGTATGTATGCAT 57.554 33.333 3.79 3.79 39.03 3.96
1494 1581 8.432013 ACAGAAAGATTCCTATGTATGTATGCA 58.568 33.333 0.00 0.00 0.00 3.96
1535 1622 3.951775 TTGCCATCACCAACCAAATAC 57.048 42.857 0.00 0.00 0.00 1.89
1536 1623 3.837146 ACATTGCCATCACCAACCAAATA 59.163 39.130 0.00 0.00 0.00 1.40
1537 1624 2.638855 ACATTGCCATCACCAACCAAAT 59.361 40.909 0.00 0.00 0.00 2.32
1538 1625 2.045524 ACATTGCCATCACCAACCAAA 58.954 42.857 0.00 0.00 0.00 3.28
1539 1626 1.714541 ACATTGCCATCACCAACCAA 58.285 45.000 0.00 0.00 0.00 3.67
1540 1627 2.593925 TACATTGCCATCACCAACCA 57.406 45.000 0.00 0.00 0.00 3.67
1541 1628 3.430651 CCATTACATTGCCATCACCAACC 60.431 47.826 0.00 0.00 0.00 3.77
1542 1629 3.195396 ACCATTACATTGCCATCACCAAC 59.805 43.478 0.00 0.00 0.00 3.77
1581 1671 2.046604 TCTTGCTCGCTGCTGCAT 60.047 55.556 16.29 0.00 43.37 3.96
1828 1924 2.525055 GCTAGAGAGAGAAACACGCAG 58.475 52.381 0.00 0.00 0.00 5.18
1829 1925 1.202582 GGCTAGAGAGAGAAACACGCA 59.797 52.381 0.00 0.00 0.00 5.24
1830 1926 1.202582 TGGCTAGAGAGAGAAACACGC 59.797 52.381 0.00 0.00 0.00 5.34
1831 1927 3.506810 CTTGGCTAGAGAGAGAAACACG 58.493 50.000 0.00 0.00 0.00 4.49
1832 1928 3.258228 GCTTGGCTAGAGAGAGAAACAC 58.742 50.000 0.00 0.00 0.00 3.32
1833 1929 2.094494 CGCTTGGCTAGAGAGAGAAACA 60.094 50.000 0.00 0.00 0.00 2.83
1834 1930 2.164624 TCGCTTGGCTAGAGAGAGAAAC 59.835 50.000 0.00 0.00 0.00 2.78
1835 1931 2.447443 TCGCTTGGCTAGAGAGAGAAA 58.553 47.619 0.00 0.00 0.00 2.52
1836 1932 2.130272 TCGCTTGGCTAGAGAGAGAA 57.870 50.000 0.00 0.00 0.00 2.87
1837 1933 3.884226 TCGCTTGGCTAGAGAGAGA 57.116 52.632 0.00 0.00 0.00 3.10
1841 1937 0.323451 TGGACTCGCTTGGCTAGAGA 60.323 55.000 0.00 0.65 36.03 3.10
1842 1938 0.532573 TTGGACTCGCTTGGCTAGAG 59.467 55.000 0.00 0.00 37.96 2.43
1843 1939 0.973632 TTTGGACTCGCTTGGCTAGA 59.026 50.000 0.00 0.00 0.00 2.43
1890 1997 3.310193 GACTAGGATGCCCTAACCTCTT 58.690 50.000 0.00 0.00 44.06 2.85
1936 2043 0.378257 CACACACACAACTGCCACTC 59.622 55.000 0.00 0.00 0.00 3.51
1946 2053 0.607762 AGGCAACACACACACACACA 60.608 50.000 0.00 0.00 41.41 3.72
1947 2054 0.179166 CAGGCAACACACACACACAC 60.179 55.000 0.00 0.00 41.41 3.82
1948 2055 0.607762 ACAGGCAACACACACACACA 60.608 50.000 0.00 0.00 41.41 3.72
1949 2056 0.179166 CACAGGCAACACACACACAC 60.179 55.000 0.00 0.00 41.41 3.82
1964 2071 2.104170 GTAGAGAGAAGGGGGTCACAG 58.896 57.143 0.00 0.00 0.00 3.66
2009 2132 8.518702 CATGCATACATACACTCACTACTCTAT 58.481 37.037 0.00 0.00 33.67 1.98
2068 2201 1.924320 GCTTGCTTGCAGAGAGCCAG 61.924 60.000 6.42 6.06 44.83 4.85
2069 2202 1.970114 GCTTGCTTGCAGAGAGCCA 60.970 57.895 6.42 0.00 44.83 4.75
2070 2203 1.521450 TTGCTTGCTTGCAGAGAGCC 61.521 55.000 13.14 0.00 44.27 4.70
2071 2204 0.313043 TTTGCTTGCTTGCAGAGAGC 59.687 50.000 9.93 9.93 44.27 4.09
2072 2205 2.662700 CTTTTGCTTGCTTGCAGAGAG 58.337 47.619 4.58 0.00 44.27 3.20
2073 2206 1.269413 GCTTTTGCTTGCTTGCAGAGA 60.269 47.619 15.28 2.63 44.27 3.10
2074 2207 1.137513 GCTTTTGCTTGCTTGCAGAG 58.862 50.000 4.58 7.93 44.27 3.35
2075 2208 3.277652 GCTTTTGCTTGCTTGCAGA 57.722 47.368 4.58 0.00 44.27 4.26
2243 2376 2.749044 ATCGCAGCAGGCAACAGG 60.749 61.111 0.00 0.00 45.17 4.00
2254 2387 2.210961 AGATCAAGACATGCATCGCAG 58.789 47.619 0.00 0.00 43.65 5.18
2280 2413 4.263243 GCTGCAAGAAGATATGATAGGGGT 60.263 45.833 0.00 0.00 34.07 4.95
2465 2598 4.682860 TCTTTTTGCTGCAGTACGTACTAC 59.317 41.667 26.95 21.99 34.13 2.73
2466 2599 4.873817 TCTTTTTGCTGCAGTACGTACTA 58.126 39.130 26.95 12.60 34.13 1.82
2467 2600 3.724374 TCTTTTTGCTGCAGTACGTACT 58.276 40.909 22.45 22.45 36.90 2.73
2490 2623 5.286082 GGTGCAAAATGCTTGTAGTAATTCG 59.714 40.000 3.78 0.00 45.31 3.34
2543 2696 2.713531 GAACCCTCCTGCTTGCCCAA 62.714 60.000 0.00 0.00 0.00 4.12
2687 2840 1.588239 ATCTGATGGAACTGGCCAGA 58.412 50.000 39.19 17.61 42.15 3.86
2689 2842 2.041485 TGAAATCTGATGGAACTGGCCA 59.959 45.455 4.71 4.71 43.23 5.36
2759 2925 9.263538 GCCAATGCATTAAATGAATTTGATAGA 57.736 29.630 12.53 0.00 36.36 1.98
2760 2926 9.047371 TGCCAATGCATTAAATGAATTTGATAG 57.953 29.630 12.53 0.00 44.23 2.08
2915 3085 0.771127 TTGGAAGTTGTGGCCTAGCT 59.229 50.000 3.32 0.00 0.00 3.32
2916 3086 1.168714 CTTGGAAGTTGTGGCCTAGC 58.831 55.000 3.32 0.00 0.00 3.42
2917 3087 2.859165 TCTTGGAAGTTGTGGCCTAG 57.141 50.000 3.32 0.00 0.00 3.02
2918 3088 2.879756 GCATCTTGGAAGTTGTGGCCTA 60.880 50.000 3.32 0.00 0.00 3.93
3217 3387 1.066918 GCAATGGCATGGCAGCTAC 59.933 57.895 27.02 12.63 40.72 3.58
3275 3445 9.534565 TGCTAGAGACAATATTGTAAGAATGAC 57.465 33.333 20.83 6.34 42.43 3.06
3327 3498 3.514645 CAAGGTGGCATTATTCAAGCAC 58.485 45.455 0.00 0.00 0.00 4.40
3496 3668 9.405587 CCGAGTGTGAATTGTTATATTTTGTTT 57.594 29.630 0.00 0.00 0.00 2.83
3978 4158 3.772572 TCGATGGTACCTTTGGATCAAGA 59.227 43.478 14.36 0.00 0.00 3.02
4010 4190 2.879907 CGTTGCATTGCTCCAGGG 59.120 61.111 10.49 0.00 0.00 4.45
4079 4259 1.025812 CCTCCTCGTCGTCTGCTAAT 58.974 55.000 0.00 0.00 0.00 1.73
4122 4302 1.238439 TCCGAAGCCTGCTTTTTCTG 58.762 50.000 5.76 0.00 36.26 3.02
4327 6863 6.560003 TGGGAATTAGCTGTAGAAATGAGA 57.440 37.500 0.00 0.00 0.00 3.27
4357 6894 3.130280 TGCACAGGATATATGCACAGG 57.870 47.619 7.02 0.00 44.17 4.00
4362 6899 8.933807 GTGATCATATATGCACAGGATATATGC 58.066 37.037 22.90 15.30 42.01 3.14
4363 6900 9.991906 TGTGATCATATATGCACAGGATATATG 57.008 33.333 22.23 22.23 42.84 1.78
4366 6903 9.743581 TTTTGTGATCATATATGCACAGGATAT 57.256 29.630 19.19 3.52 41.63 1.63
4367 6904 9.743581 ATTTTGTGATCATATATGCACAGGATA 57.256 29.630 19.19 8.13 41.63 2.59
4368 6905 8.645814 ATTTTGTGATCATATATGCACAGGAT 57.354 30.769 19.19 15.56 41.63 3.24
4369 6906 8.467963 AATTTTGTGATCATATATGCACAGGA 57.532 30.769 19.19 14.52 41.63 3.86
4565 7104 0.390866 CAGTGAATGCGCAGGAGAGT 60.391 55.000 18.32 0.00 0.00 3.24
4606 7145 4.463891 AGTCCAATGCCAAATCTTAACCAG 59.536 41.667 0.00 0.00 0.00 4.00
4678 7217 0.396435 CCAGCCACCTGTTGTACTCA 59.604 55.000 0.00 0.00 37.38 3.41
5378 9955 6.926272 AGTTTGAAGAGTAGTGACACATCTTC 59.074 38.462 25.87 25.87 43.90 2.87
5466 10043 3.380320 ACAAGTTTTACCAGGCACTTCAC 59.620 43.478 0.00 0.00 34.60 3.18
5472 10049 2.510613 GCCTACAAGTTTTACCAGGCA 58.489 47.619 5.57 0.00 46.27 4.75
5640 10217 8.688747 ATTGACCTTTTAAATTGGCAAATCAA 57.311 26.923 3.01 10.11 0.00 2.57
5648 10225 8.748412 TGTGGATAGATTGACCTTTTAAATTGG 58.252 33.333 6.30 6.30 0.00 3.16
5813 10392 4.272489 TCAAGTTATCAGCCTGGAAATGG 58.728 43.478 0.00 0.00 0.00 3.16
5976 10555 3.327757 ACAGGACAGAGGTAAGAATTGCA 59.672 43.478 0.00 0.00 29.70 4.08
5977 10556 3.686726 CACAGGACAGAGGTAAGAATTGC 59.313 47.826 0.00 0.00 0.00 3.56
6076 10655 9.341078 TGCTCAATCATATGCACTTAGATTTAA 57.659 29.630 0.00 0.00 0.00 1.52
6077 10656 8.907222 TGCTCAATCATATGCACTTAGATTTA 57.093 30.769 0.00 0.00 0.00 1.40
6146 10725 5.073008 TCCATGCTGATTAGTAGGGCAAATA 59.927 40.000 1.26 0.00 39.85 1.40
6149 10728 2.777114 TCCATGCTGATTAGTAGGGCAA 59.223 45.455 1.26 0.00 39.85 4.52
6288 10867 5.953571 AGTGAAAGAAACCATCCCTAGTTT 58.046 37.500 0.00 0.00 38.85 2.66
6295 10874 5.985530 CAGGAAAAAGTGAAAGAAACCATCC 59.014 40.000 0.00 0.00 0.00 3.51
6512 11092 1.667724 CTTAGCTCTCCACAATTGCCG 59.332 52.381 5.05 0.00 0.00 5.69
6902 11482 7.070447 TGTCAGATAGCTCACCTATTCAATTCT 59.930 37.037 0.00 0.00 36.88 2.40
7024 11604 2.238898 AGATTACCCCTTTGTTCCCTCG 59.761 50.000 0.00 0.00 0.00 4.63
7189 11769 4.020543 CAAATATTTGGGAACGGAGGGAA 58.979 43.478 18.72 0.00 34.59 3.97
7190 11770 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
7191 11771 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
7192 11772 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
7193 11773 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
7194 11774 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
7195 11775 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
7196 11776 9.341899 CTTTAGAAAGACAAATATTTGGGAACG 57.658 33.333 27.43 6.31 42.34 3.95
7210 11790 9.559732 TCACTTGATGAAATCTTTAGAAAGACA 57.440 29.630 6.85 2.17 45.81 3.41
7211 11791 9.818796 GTCACTTGATGAAATCTTTAGAAAGAC 57.181 33.333 6.85 0.00 45.81 3.01
7212 11792 9.784531 AGTCACTTGATGAAATCTTTAGAAAGA 57.215 29.630 7.15 7.15 45.81 2.52
7215 11795 9.996554 TGTAGTCACTTGATGAAATCTTTAGAA 57.003 29.630 0.00 0.00 45.81 2.10
7219 11799 8.873830 CGTATGTAGTCACTTGATGAAATCTTT 58.126 33.333 0.00 0.00 45.81 2.52
7220 11800 8.251026 TCGTATGTAGTCACTTGATGAAATCTT 58.749 33.333 0.00 0.00 45.81 2.40
7221 11801 7.772166 TCGTATGTAGTCACTTGATGAAATCT 58.228 34.615 0.00 0.00 45.81 2.40
7222 11802 7.987268 TCGTATGTAGTCACTTGATGAAATC 57.013 36.000 0.00 0.00 45.83 2.17
7223 11803 7.010552 GCTTCGTATGTAGTCACTTGATGAAAT 59.989 37.037 0.00 0.00 39.72 2.17
7224 11804 6.310467 GCTTCGTATGTAGTCACTTGATGAAA 59.690 38.462 0.00 0.00 39.72 2.69
7225 11805 5.805486 GCTTCGTATGTAGTCACTTGATGAA 59.195 40.000 0.00 0.00 39.72 2.57
7226 11806 5.105917 TGCTTCGTATGTAGTCACTTGATGA 60.106 40.000 0.00 0.00 33.79 2.92
7227 11807 5.102313 TGCTTCGTATGTAGTCACTTGATG 58.898 41.667 0.00 0.00 0.00 3.07
7228 11808 5.324784 TGCTTCGTATGTAGTCACTTGAT 57.675 39.130 0.00 0.00 0.00 2.57
7229 11809 4.776795 TGCTTCGTATGTAGTCACTTGA 57.223 40.909 0.00 0.00 0.00 3.02
7230 11810 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
7231 11811 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
7232 11812 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
7233 11813 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
7234 11814 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
7235 11815 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
7236 11816 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
7237 11817 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
7238 11818 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
7239 11819 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
7240 11820 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
7241 11821 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
7242 11822 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
7243 11823 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
7244 11824 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
7245 11825 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
7246 11826 7.516198 AAGTGTAGATTCACTCATTTTGCTT 57.484 32.000 0.00 0.00 46.25 3.91
7247 11827 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
7248 11828 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
7285 11865 4.746535 TGGACACAACATACGGATGTAT 57.253 40.909 15.10 2.23 45.93 2.29
7286 11866 4.746535 ATGGACACAACATACGGATGTA 57.253 40.909 15.10 0.00 45.93 2.29
7288 11868 4.394610 TCAAATGGACACAACATACGGATG 59.605 41.667 5.94 5.94 39.16 3.51
7289 11869 4.584874 TCAAATGGACACAACATACGGAT 58.415 39.130 0.00 0.00 0.00 4.18
7290 11870 4.009370 TCAAATGGACACAACATACGGA 57.991 40.909 0.00 0.00 0.00 4.69
7291 11871 4.757799 TTCAAATGGACACAACATACGG 57.242 40.909 0.00 0.00 0.00 4.02
7292 11872 5.060816 GCATTTCAAATGGACACAACATACG 59.939 40.000 12.14 0.00 0.00 3.06
7293 11873 5.348451 GGCATTTCAAATGGACACAACATAC 59.652 40.000 12.14 0.00 0.00 2.39
7294 11874 5.245751 AGGCATTTCAAATGGACACAACATA 59.754 36.000 12.14 0.00 0.00 2.29
7295 11875 4.040706 AGGCATTTCAAATGGACACAACAT 59.959 37.500 12.14 0.00 0.00 2.71
7296 11876 3.387374 AGGCATTTCAAATGGACACAACA 59.613 39.130 12.14 0.00 0.00 3.33
7297 11877 3.993920 AGGCATTTCAAATGGACACAAC 58.006 40.909 12.14 0.00 0.00 3.32
7298 11878 5.076182 TCTAGGCATTTCAAATGGACACAA 58.924 37.500 12.14 0.00 0.00 3.33
7299 11879 4.661222 TCTAGGCATTTCAAATGGACACA 58.339 39.130 12.14 0.00 0.00 3.72
7300 11880 5.643379 TTCTAGGCATTTCAAATGGACAC 57.357 39.130 12.14 0.00 0.00 3.67
7301 11881 6.009589 TCTTTCTAGGCATTTCAAATGGACA 58.990 36.000 12.14 0.00 0.00 4.02
7302 11882 6.071952 TGTCTTTCTAGGCATTTCAAATGGAC 60.072 38.462 12.14 8.23 29.10 4.02
7303 11883 6.009589 TGTCTTTCTAGGCATTTCAAATGGA 58.990 36.000 12.14 0.00 29.10 3.41
7304 11884 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
7305 11885 8.767478 ATTTGTCTTTCTAGGCATTTCAAATG 57.233 30.769 5.68 5.68 35.56 2.32
7309 11889 9.859427 CAAATATTTGTCTTTCTAGGCATTTCA 57.141 29.630 18.32 0.00 35.56 2.69
7310 11890 9.305925 CCAAATATTTGTCTTTCTAGGCATTTC 57.694 33.333 23.24 0.00 35.56 2.17
7311 11891 8.260114 CCCAAATATTTGTCTTTCTAGGCATTT 58.740 33.333 23.24 0.00 35.56 2.32
7312 11892 7.619302 TCCCAAATATTTGTCTTTCTAGGCATT 59.381 33.333 23.24 0.00 35.56 3.56
7313 11893 7.125391 TCCCAAATATTTGTCTTTCTAGGCAT 58.875 34.615 23.24 0.00 35.56 4.40
7314 11894 6.489603 TCCCAAATATTTGTCTTTCTAGGCA 58.510 36.000 23.24 5.94 36.45 4.75
7315 11895 7.258441 GTTCCCAAATATTTGTCTTTCTAGGC 58.742 38.462 23.24 3.57 36.45 3.93
7316 11896 7.415206 CCGTTCCCAAATATTTGTCTTTCTAGG 60.415 40.741 23.24 15.51 36.45 3.02
7317 11897 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
7318 11898 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
7319 11899 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
7320 11900 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
7321 11901 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
7322 11902 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
7323 11903 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
7324 11904 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
7325 11905 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
7326 11906 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
7327 11907 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
7328 11908 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
7329 11909 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
7330 11910 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
7331 11911 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
7332 11912 1.203212 TCTACTCCCTCCGTTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
7333 11913 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
7334 11914 0.635009 ATCTACTCCCTCCGTTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
7335 11915 2.158490 ACTATCTACTCCCTCCGTTCCC 60.158 54.545 0.00 0.00 0.00 3.97
7336 11916 3.226682 ACTATCTACTCCCTCCGTTCC 57.773 52.381 0.00 0.00 0.00 3.62
7337 11917 3.745458 CGTACTATCTACTCCCTCCGTTC 59.255 52.174 0.00 0.00 0.00 3.95
7338 11918 3.737850 CGTACTATCTACTCCCTCCGTT 58.262 50.000 0.00 0.00 0.00 4.44
7339 11919 2.549778 GCGTACTATCTACTCCCTCCGT 60.550 54.545 0.00 0.00 0.00 4.69
7340 11920 2.075338 GCGTACTATCTACTCCCTCCG 58.925 57.143 0.00 0.00 0.00 4.63
7341 11921 2.813172 GTGCGTACTATCTACTCCCTCC 59.187 54.545 0.00 0.00 0.00 4.30
7342 11922 3.474600 TGTGCGTACTATCTACTCCCTC 58.525 50.000 4.97 0.00 0.00 4.30
7343 11923 3.478509 CTGTGCGTACTATCTACTCCCT 58.521 50.000 4.97 0.00 0.00 4.20
7344 11924 2.553172 CCTGTGCGTACTATCTACTCCC 59.447 54.545 4.97 0.00 0.00 4.30
7345 11925 3.474600 TCCTGTGCGTACTATCTACTCC 58.525 50.000 4.97 0.00 0.00 3.85
7346 11926 5.496133 TTTCCTGTGCGTACTATCTACTC 57.504 43.478 4.97 0.00 0.00 2.59
7347 11927 5.651139 TCTTTTCCTGTGCGTACTATCTACT 59.349 40.000 4.97 0.00 0.00 2.57
7348 11928 5.888105 TCTTTTCCTGTGCGTACTATCTAC 58.112 41.667 4.97 0.00 0.00 2.59
7349 11929 6.519679 TTCTTTTCCTGTGCGTACTATCTA 57.480 37.500 4.97 0.00 0.00 1.98
7350 11930 5.401531 TTCTTTTCCTGTGCGTACTATCT 57.598 39.130 4.97 0.00 0.00 1.98
7359 11939 5.984926 TCAAATGACAATTCTTTTCCTGTGC 59.015 36.000 0.00 0.00 28.95 4.57
7455 12041 7.227116 TGTGGAGTGTACACTTTGGTTTATAAC 59.773 37.037 28.49 11.51 42.66 1.89
7477 12063 3.441496 ACAGCAAATTCAGTGTTGTGG 57.559 42.857 0.00 0.00 38.76 4.17
7489 12075 4.660789 AGCAACTCTTTTCACAGCAAAT 57.339 36.364 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.