Multiple sequence alignment - TraesCS4B01G134900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G134900 chr4B 100.000 3649 0 0 1 3649 175565693 175562045 0.000000e+00 6739
1 TraesCS4B01G134900 chr4B 84.061 527 79 5 18 541 519383168 519382644 1.510000e-138 503
2 TraesCS4B01G134900 chr4A 94.605 1520 57 7 2032 3548 462202537 462204034 0.000000e+00 2329
3 TraesCS4B01G134900 chr4A 93.417 1200 42 12 754 1919 462201342 462202538 0.000000e+00 1744
4 TraesCS4B01G134900 chr4A 90.805 870 28 13 2683 3548 611200497 611199676 0.000000e+00 1116
5 TraesCS4B01G134900 chr4A 96.104 77 3 0 3573 3649 611199618 611199542 3.830000e-25 126
6 TraesCS4B01G134900 chr4D 95.366 1079 42 6 2032 3106 115124508 115123434 0.000000e+00 1709
7 TraesCS4B01G134900 chr4D 95.005 1081 47 7 842 1919 115125583 115124507 0.000000e+00 1690
8 TraesCS4B01G134900 chr4D 90.168 834 64 7 9 838 115132855 115132036 0.000000e+00 1070
9 TraesCS4B01G134900 chr4D 88.941 642 39 16 2683 3315 447980693 447980075 0.000000e+00 763
10 TraesCS4B01G134900 chr4D 91.974 461 21 4 3093 3548 115122902 115122453 1.850000e-177 632
11 TraesCS4B01G134900 chr4D 91.060 302 7 4 3247 3548 447980178 447979897 1.230000e-104 390
12 TraesCS4B01G134900 chr4D 94.958 119 6 0 1915 2033 45923796 45923914 1.730000e-43 187
13 TraesCS4B01G134900 chr4D 94.118 119 7 0 1915 2033 415143514 415143396 8.050000e-42 182
14 TraesCS4B01G134900 chr4D 94.000 100 5 1 740 838 115162806 115162905 2.270000e-32 150
15 TraesCS4B01G134900 chr4D 98.701 77 1 0 3573 3649 115122395 115122319 1.770000e-28 137
16 TraesCS4B01G134900 chr4D 97.403 77 2 0 3573 3649 447979839 447979763 8.220000e-27 132
17 TraesCS4B01G134900 chr3D 90.031 953 44 7 2597 3548 554393038 554392136 0.000000e+00 1186
18 TraesCS4B01G134900 chr3D 100.000 77 0 0 3573 3649 554392078 554392002 3.800000e-30 143
19 TraesCS4B01G134900 chr2B 91.475 868 26 11 2683 3548 654361610 654362431 0.000000e+00 1149
20 TraesCS4B01G134900 chr2B 91.176 544 44 4 8 550 542934023 542933483 0.000000e+00 736
21 TraesCS4B01G134900 chr7B 90.679 869 29 16 2683 3548 686930324 686929505 0.000000e+00 1109
22 TraesCS4B01G134900 chr7B 92.152 446 22 2 3103 3548 109171770 109172202 5.180000e-173 617
23 TraesCS4B01G134900 chr7B 91.975 324 18 6 2597 2918 109180449 109180132 7.190000e-122 448
24 TraesCS4B01G134900 chr7A 90.207 868 30 14 2683 3548 284785628 284784814 0.000000e+00 1081
25 TraesCS4B01G134900 chr7A 92.096 544 41 2 8 550 111904809 111905351 0.000000e+00 765
26 TraesCS4B01G134900 chr7A 91.289 551 46 2 1 550 511956248 511956797 0.000000e+00 750
27 TraesCS4B01G134900 chr7A 91.529 543 44 2 9 550 69331175 69331716 0.000000e+00 747
28 TraesCS4B01G134900 chr7A 97.403 77 2 0 3573 3649 284784756 284784680 8.220000e-27 132
29 TraesCS4B01G134900 chr5B 90.115 870 33 13 2683 3548 614980458 614981278 0.000000e+00 1081
30 TraesCS4B01G134900 chr5B 94.915 118 6 0 1916 2033 711355327 711355444 6.220000e-43 185
31 TraesCS4B01G134900 chr5B 93.496 123 8 0 1911 2033 65773697 65773575 2.240000e-42 183
32 TraesCS4B01G134900 chr5B 97.403 77 2 0 3573 3649 614981336 614981412 8.220000e-27 132
33 TraesCS4B01G134900 chr5B 96.104 77 3 0 3573 3649 629973308 629973384 3.830000e-25 126
34 TraesCS4B01G134900 chr6D 87.903 868 26 16 2683 3548 163353967 163353177 0.000000e+00 948
35 TraesCS4B01G134900 chr6D 96.104 77 3 0 3573 3649 163353119 163353043 3.830000e-25 126
36 TraesCS4B01G134900 chr2A 91.500 600 24 14 2670 3267 711071734 711071160 0.000000e+00 800
37 TraesCS4B01G134900 chr2A 90.106 283 7 5 3266 3548 711071067 711070806 7.500000e-92 348
38 TraesCS4B01G134900 chr2A 95.726 117 5 0 1918 2034 609453939 609453823 4.810000e-44 189
39 TraesCS4B01G134900 chr2A 97.403 77 2 0 3573 3649 711070748 711070672 8.220000e-27 132
40 TraesCS4B01G134900 chr1B 91.289 551 46 2 1 550 280465352 280465901 0.000000e+00 750
41 TraesCS4B01G134900 chr1B 84.411 526 79 3 18 541 449368012 449367488 6.990000e-142 514
42 TraesCS4B01G134900 chr3A 84.030 526 81 3 18 541 746886799 746886275 1.510000e-138 503
43 TraesCS4B01G134900 chr6B 95.763 118 5 0 1916 2033 174950790 174950673 1.340000e-44 191
44 TraesCS4B01G134900 chr6B 94.872 117 6 0 1918 2034 141070085 141070201 2.240000e-42 183
45 TraesCS4B01G134900 chr1A 92.000 125 10 0 1909 2033 425722401 425722525 3.740000e-40 176
46 TraesCS4B01G134900 chr7D 89.286 140 12 3 1917 2056 595978493 595978357 4.840000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G134900 chr4B 175562045 175565693 3648 True 6739.000000 6739 100.0000 1 3649 1 chr4B.!!$R1 3648
1 TraesCS4B01G134900 chr4B 519382644 519383168 524 True 503.000000 503 84.0610 18 541 1 chr4B.!!$R2 523
2 TraesCS4B01G134900 chr4A 462201342 462204034 2692 False 2036.500000 2329 94.0110 754 3548 2 chr4A.!!$F1 2794
3 TraesCS4B01G134900 chr4A 611199542 611200497 955 True 621.000000 1116 93.4545 2683 3649 2 chr4A.!!$R1 966
4 TraesCS4B01G134900 chr4D 115132036 115132855 819 True 1070.000000 1070 90.1680 9 838 1 chr4D.!!$R1 829
5 TraesCS4B01G134900 chr4D 115122319 115125583 3264 True 1042.000000 1709 95.2615 842 3649 4 chr4D.!!$R3 2807
6 TraesCS4B01G134900 chr4D 447979763 447980693 930 True 428.333333 763 92.4680 2683 3649 3 chr4D.!!$R4 966
7 TraesCS4B01G134900 chr3D 554392002 554393038 1036 True 664.500000 1186 95.0155 2597 3649 2 chr3D.!!$R1 1052
8 TraesCS4B01G134900 chr2B 654361610 654362431 821 False 1149.000000 1149 91.4750 2683 3548 1 chr2B.!!$F1 865
9 TraesCS4B01G134900 chr2B 542933483 542934023 540 True 736.000000 736 91.1760 8 550 1 chr2B.!!$R1 542
10 TraesCS4B01G134900 chr7B 686929505 686930324 819 True 1109.000000 1109 90.6790 2683 3548 1 chr7B.!!$R2 865
11 TraesCS4B01G134900 chr7A 111904809 111905351 542 False 765.000000 765 92.0960 8 550 1 chr7A.!!$F2 542
12 TraesCS4B01G134900 chr7A 511956248 511956797 549 False 750.000000 750 91.2890 1 550 1 chr7A.!!$F3 549
13 TraesCS4B01G134900 chr7A 69331175 69331716 541 False 747.000000 747 91.5290 9 550 1 chr7A.!!$F1 541
14 TraesCS4B01G134900 chr7A 284784680 284785628 948 True 606.500000 1081 93.8050 2683 3649 2 chr7A.!!$R1 966
15 TraesCS4B01G134900 chr5B 614980458 614981412 954 False 606.500000 1081 93.7590 2683 3649 2 chr5B.!!$F3 966
16 TraesCS4B01G134900 chr6D 163353043 163353967 924 True 537.000000 948 92.0035 2683 3649 2 chr6D.!!$R1 966
17 TraesCS4B01G134900 chr2A 711070672 711071734 1062 True 426.666667 800 93.0030 2670 3649 3 chr2A.!!$R2 979
18 TraesCS4B01G134900 chr1B 280465352 280465901 549 False 750.000000 750 91.2890 1 550 1 chr1B.!!$F1 549
19 TraesCS4B01G134900 chr1B 449367488 449368012 524 True 514.000000 514 84.4110 18 541 1 chr1B.!!$R1 523
20 TraesCS4B01G134900 chr3A 746886275 746886799 524 True 503.000000 503 84.0300 18 541 1 chr3A.!!$R1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 755 0.178813 AAGGGGAGGGGGTTATGTGT 60.179 55.0 0.00 0.0 0.00 3.72 F
1355 1387 0.172578 ACCGATCGCGATTCACTTCA 59.827 50.0 24.55 0.0 40.82 3.02 F
1933 1974 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.0 0.00 0.0 42.90 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1917 1958 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.0 46.06 2.59 R
2280 2321 1.293924 CTGCTTTAGCCAGATGTCGG 58.706 55.0 0.00 0.0 41.18 4.79 R
3530 4225 2.167487 AGAAGAAGTCGAAGGGATCAGC 59.833 50.0 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.131972 AGGCTGCCATTGATATAGTTATGT 57.868 37.500 22.65 0.00 0.00 2.29
66 67 3.857052 TGTCAAACACCGTCCATAGATC 58.143 45.455 0.00 0.00 0.00 2.75
124 125 2.368875 GGTTGGTCCTTCACTGAGAGAA 59.631 50.000 0.00 0.00 0.00 2.87
125 126 3.394719 GTTGGTCCTTCACTGAGAGAAC 58.605 50.000 0.00 0.00 0.00 3.01
197 198 4.737649 GCCCAGCTAAATTTGAGGCATAAC 60.738 45.833 0.00 0.00 38.79 1.89
237 238 8.010733 TCTGAATTTGGTCTTGAAGAAAACAT 57.989 30.769 0.00 0.00 0.00 2.71
239 240 9.185192 CTGAATTTGGTCTTGAAGAAAACATAC 57.815 33.333 0.00 0.00 0.00 2.39
264 265 6.073003 CGGTTTGCTAGGAGATATGAAATTCC 60.073 42.308 0.00 0.00 0.00 3.01
267 268 6.119240 TGCTAGGAGATATGAAATTCCTGG 57.881 41.667 2.27 0.62 40.21 4.45
277 278 3.293337 TGAAATTCCTGGCTCATGGATG 58.707 45.455 0.00 0.00 31.76 3.51
342 344 0.884514 CTTCGAGGTCAGAGAGTGCA 59.115 55.000 0.00 0.00 0.00 4.57
471 473 4.454678 GTCATGATTGCCTCAACTCCATA 58.545 43.478 0.00 0.00 37.44 2.74
492 495 7.017452 TCCATATCTCCATTGATTACACCATGA 59.983 37.037 0.00 0.00 0.00 3.07
532 537 1.814394 GCATGCACTTCAACCATGAGA 59.186 47.619 14.21 0.00 38.84 3.27
585 590 2.990479 GGAGAGTCCCGCACCATT 59.010 61.111 0.00 0.00 0.00 3.16
607 612 2.304761 GGGTCACTATTGTGTGGGAAGA 59.695 50.000 7.18 0.00 44.14 2.87
608 613 3.244770 GGGTCACTATTGTGTGGGAAGAA 60.245 47.826 7.18 0.00 44.14 2.52
609 614 4.567747 GGGTCACTATTGTGTGGGAAGAAT 60.568 45.833 7.18 0.00 44.14 2.40
610 615 4.396166 GGTCACTATTGTGTGGGAAGAATG 59.604 45.833 7.18 0.00 44.14 2.67
616 621 0.949105 GTGTGGGAAGAATGTCGCGT 60.949 55.000 5.77 0.00 33.32 6.01
619 624 1.445582 GGGAAGAATGTCGCGTCGT 60.446 57.895 5.77 0.00 0.00 4.34
654 659 2.658268 GCACCAAGTTGCCGTTGC 60.658 61.111 0.00 0.00 36.42 4.17
695 700 0.317020 GTGAGGCGTTTTGTGTGAGC 60.317 55.000 0.00 0.00 0.00 4.26
731 736 8.836413 GGGTCGAGTGAATTGAATTGATTAATA 58.164 33.333 0.00 0.00 0.00 0.98
750 755 0.178813 AAGGGGAGGGGGTTATGTGT 60.179 55.000 0.00 0.00 0.00 3.72
834 840 4.441913 CCAATGACCCATGCCATTAGTTTC 60.442 45.833 6.08 0.00 32.31 2.78
838 844 2.042979 ACCCATGCCATTAGTTTCCAGT 59.957 45.455 0.00 0.00 0.00 4.00
839 845 2.428171 CCCATGCCATTAGTTTCCAGTG 59.572 50.000 0.00 0.00 0.00 3.66
840 846 3.355378 CCATGCCATTAGTTTCCAGTGA 58.645 45.455 0.00 0.00 0.00 3.41
887 911 2.224784 GGCATAAACGGAACAGAAACGT 59.775 45.455 0.00 0.00 43.43 3.99
895 919 2.154389 CGGAACAGAAACGTAACCGAAG 59.846 50.000 0.00 0.00 39.60 3.79
952 976 1.298014 GACAGCACAAGGGAGGAGG 59.702 63.158 0.00 0.00 0.00 4.30
960 984 1.936631 ACAAGGGAGGAGGAGAGAGAT 59.063 52.381 0.00 0.00 0.00 2.75
967 999 4.168101 GGAGGAGGAGAGAGATAGAGAGA 58.832 52.174 0.00 0.00 0.00 3.10
969 1001 4.566837 AGGAGGAGAGAGATAGAGAGACA 58.433 47.826 0.00 0.00 0.00 3.41
1041 1073 3.946201 ACGCTGCTGGGCTTCTGT 61.946 61.111 7.59 0.00 0.00 3.41
1175 1207 2.680352 TCAGAGCCGGTCACTCCC 60.680 66.667 1.90 0.00 34.56 4.30
1355 1387 0.172578 ACCGATCGCGATTCACTTCA 59.827 50.000 24.55 0.00 40.82 3.02
1411 1443 3.400255 GAATTAACTGTAGCGGGGATCC 58.600 50.000 1.92 1.92 0.00 3.36
1426 1458 1.612469 GATCCATCGATCGCGCACTG 61.612 60.000 11.09 2.63 35.83 3.66
1532 1564 2.790433 TCCATGCCAAGGAACAAGTAC 58.210 47.619 0.00 0.00 30.71 2.73
1681 1720 2.610374 GAGTGTTGACGGCTGTGTTTAA 59.390 45.455 0.80 0.00 0.00 1.52
1746 1785 7.759489 TTGTTACTGAATATAATGGGGCATC 57.241 36.000 0.00 0.00 0.00 3.91
1791 1831 5.738909 TGTCGCCTTAGTTCTACTACTAGT 58.261 41.667 0.00 0.00 32.54 2.57
1792 1832 6.176183 TGTCGCCTTAGTTCTACTACTAGTT 58.824 40.000 0.00 0.00 32.54 2.24
1850 1890 1.176527 ATGTCATTTTGGCGTCTGGG 58.823 50.000 0.00 0.00 0.00 4.45
1886 1927 8.923270 TCTATGTTCTATAATGGACATCACACA 58.077 33.333 0.00 0.00 0.00 3.72
1917 1958 5.472301 AGATGGGGGAACTGTTATCAAAT 57.528 39.130 0.00 0.00 0.00 2.32
1918 1959 6.590656 AGATGGGGGAACTGTTATCAAATA 57.409 37.500 0.00 0.00 0.00 1.40
1919 1960 6.365520 AGATGGGGGAACTGTTATCAAATAC 58.634 40.000 0.00 0.00 0.00 1.89
1920 1961 5.789574 TGGGGGAACTGTTATCAAATACT 57.210 39.130 0.00 0.00 0.00 2.12
1921 1962 5.751586 TGGGGGAACTGTTATCAAATACTC 58.248 41.667 0.00 0.00 0.00 2.59
1922 1963 5.131067 GGGGGAACTGTTATCAAATACTCC 58.869 45.833 0.00 0.00 0.00 3.85
1923 1964 5.131067 GGGGAACTGTTATCAAATACTCCC 58.869 45.833 0.00 0.00 39.48 4.30
1924 1965 5.104067 GGGGAACTGTTATCAAATACTCCCT 60.104 44.000 6.78 0.00 39.99 4.20
1925 1966 6.056236 GGGAACTGTTATCAAATACTCCCTC 58.944 44.000 0.00 0.00 37.57 4.30
1926 1967 6.056236 GGAACTGTTATCAAATACTCCCTCC 58.944 44.000 0.00 0.00 0.00 4.30
1927 1968 5.277857 ACTGTTATCAAATACTCCCTCCG 57.722 43.478 0.00 0.00 0.00 4.63
1928 1969 4.715297 ACTGTTATCAAATACTCCCTCCGT 59.285 41.667 0.00 0.00 0.00 4.69
1929 1970 5.163437 ACTGTTATCAAATACTCCCTCCGTC 60.163 44.000 0.00 0.00 0.00 4.79
1930 1971 4.100498 TGTTATCAAATACTCCCTCCGTCC 59.900 45.833 0.00 0.00 0.00 4.79
1931 1972 1.108776 TCAAATACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
1932 1973 0.104304 CAAATACTCCCTCCGTCCGG 59.896 60.000 0.00 0.00 0.00 5.14
1933 1974 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
1934 1975 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
1935 1976 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
1936 1977 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1937 1978 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1938 1979 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1939 1980 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1940 1981 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1941 1982 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1942 1983 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1943 1984 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1944 1985 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
1945 1986 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
1946 1987 2.428171 CCGTCCGGAAATACTTGTCCTA 59.572 50.000 5.23 0.00 37.50 2.94
1947 1988 3.490419 CCGTCCGGAAATACTTGTCCTAG 60.490 52.174 5.23 0.00 37.50 3.02
1948 1989 3.379372 CGTCCGGAAATACTTGTCCTAGA 59.621 47.826 5.23 0.00 0.00 2.43
1949 1990 4.142315 CGTCCGGAAATACTTGTCCTAGAA 60.142 45.833 5.23 0.00 0.00 2.10
1950 1991 5.622914 CGTCCGGAAATACTTGTCCTAGAAA 60.623 44.000 5.23 0.00 0.00 2.52
1951 1992 6.346896 GTCCGGAAATACTTGTCCTAGAAAT 58.653 40.000 5.23 0.00 0.00 2.17
1952 1993 6.258068 GTCCGGAAATACTTGTCCTAGAAATG 59.742 42.308 5.23 0.00 0.00 2.32
1953 1994 5.527582 CCGGAAATACTTGTCCTAGAAATGG 59.472 44.000 0.00 0.00 0.00 3.16
1954 1995 6.346096 CGGAAATACTTGTCCTAGAAATGGA 58.654 40.000 0.00 0.00 0.00 3.41
1955 1996 6.992715 CGGAAATACTTGTCCTAGAAATGGAT 59.007 38.462 0.00 0.00 35.87 3.41
1956 1997 7.041780 CGGAAATACTTGTCCTAGAAATGGATG 60.042 40.741 0.00 0.00 35.87 3.51
1957 1998 7.775561 GGAAATACTTGTCCTAGAAATGGATGT 59.224 37.037 0.00 0.00 35.87 3.06
1958 1999 9.832445 GAAATACTTGTCCTAGAAATGGATGTA 57.168 33.333 0.00 0.00 35.87 2.29
1961 2002 7.682787 ACTTGTCCTAGAAATGGATGTATCT 57.317 36.000 0.00 0.00 35.87 1.98
1962 2003 8.783660 ACTTGTCCTAGAAATGGATGTATCTA 57.216 34.615 0.00 0.00 35.87 1.98
1963 2004 8.865090 ACTTGTCCTAGAAATGGATGTATCTAG 58.135 37.037 0.00 0.00 40.55 2.43
1964 2005 9.083422 CTTGTCCTAGAAATGGATGTATCTAGA 57.917 37.037 9.60 0.00 42.48 2.43
1965 2006 8.410673 TGTCCTAGAAATGGATGTATCTAGAC 57.589 38.462 9.60 7.06 42.48 2.59
1966 2007 8.228206 TGTCCTAGAAATGGATGTATCTAGACT 58.772 37.037 9.60 0.00 42.48 3.24
1967 2008 9.084533 GTCCTAGAAATGGATGTATCTAGACTT 57.915 37.037 9.60 0.00 42.48 3.01
2006 2047 9.831737 GATACATCAATTTTATCCATTTCGAGG 57.168 33.333 0.00 0.00 0.00 4.63
2007 2048 7.880160 ACATCAATTTTATCCATTTCGAGGA 57.120 32.000 0.00 0.00 39.97 3.71
2008 2049 7.707104 ACATCAATTTTATCCATTTCGAGGAC 58.293 34.615 0.00 0.00 38.13 3.85
2009 2050 7.339212 ACATCAATTTTATCCATTTCGAGGACA 59.661 33.333 0.00 0.00 38.13 4.02
2010 2051 7.695480 TCAATTTTATCCATTTCGAGGACAA 57.305 32.000 0.00 0.00 38.13 3.18
2011 2052 7.761409 TCAATTTTATCCATTTCGAGGACAAG 58.239 34.615 0.00 0.00 38.13 3.16
2012 2053 7.393234 TCAATTTTATCCATTTCGAGGACAAGT 59.607 33.333 0.00 0.00 38.13 3.16
2013 2054 8.673711 CAATTTTATCCATTTCGAGGACAAGTA 58.326 33.333 0.00 0.00 38.13 2.24
2014 2055 8.980481 ATTTTATCCATTTCGAGGACAAGTAT 57.020 30.769 0.00 0.00 38.13 2.12
2015 2056 8.801882 TTTTATCCATTTCGAGGACAAGTATT 57.198 30.769 0.00 0.00 38.13 1.89
2016 2057 8.801882 TTTATCCATTTCGAGGACAAGTATTT 57.198 30.769 0.00 0.00 38.13 1.40
2017 2058 8.801882 TTATCCATTTCGAGGACAAGTATTTT 57.198 30.769 0.00 0.00 38.13 1.82
2018 2059 7.703058 ATCCATTTCGAGGACAAGTATTTTT 57.297 32.000 0.00 0.00 38.13 1.94
2019 2060 6.908825 TCCATTTCGAGGACAAGTATTTTTG 58.091 36.000 0.00 0.00 0.00 2.44
2020 2061 6.072175 TCCATTTCGAGGACAAGTATTTTTGG 60.072 38.462 0.00 0.00 32.32 3.28
2021 2062 6.072175 CCATTTCGAGGACAAGTATTTTTGGA 60.072 38.462 0.00 0.00 32.32 3.53
2022 2063 5.934935 TTCGAGGACAAGTATTTTTGGAC 57.065 39.130 0.00 0.00 32.32 4.02
2023 2064 3.991773 TCGAGGACAAGTATTTTTGGACG 59.008 43.478 0.00 0.00 32.32 4.79
2024 2065 3.124636 CGAGGACAAGTATTTTTGGACGG 59.875 47.826 0.00 0.00 32.32 4.79
2025 2066 4.320870 GAGGACAAGTATTTTTGGACGGA 58.679 43.478 0.00 0.00 32.32 4.69
2026 2067 4.324267 AGGACAAGTATTTTTGGACGGAG 58.676 43.478 0.00 0.00 32.32 4.63
2045 2086 3.182967 GAGTGAGTAGGTCAAATGCTCG 58.817 50.000 0.00 0.00 36.74 5.03
2048 2089 0.905357 AGTAGGTCAAATGCTCGCCT 59.095 50.000 0.00 0.00 0.00 5.52
2073 2114 0.539051 CGATGAGAAGGAAGCAGGGT 59.461 55.000 0.00 0.00 0.00 4.34
2086 2127 4.162509 GGAAGCAGGGTTCTGAGTAATAGT 59.837 45.833 10.63 0.00 43.49 2.12
2203 2244 0.741574 TCGTTTGCAGGTGTGTCGTT 60.742 50.000 0.00 0.00 0.00 3.85
2280 2321 2.200170 GATTTCCACGTGGCCTGCAC 62.200 60.000 30.25 14.02 34.44 4.57
2433 2474 0.397941 TCAAGATCCGATCCATGCCC 59.602 55.000 4.67 0.00 0.00 5.36
2457 2498 2.203788 TGTTCTCCGGCAGAGGGT 60.204 61.111 0.00 0.00 43.44 4.34
2468 2509 0.107654 GCAGAGGGTATTCGCCAACT 60.108 55.000 0.00 0.00 0.00 3.16
2485 2526 3.554129 CCAACTACATCGTCACAGGTTCA 60.554 47.826 0.00 0.00 0.00 3.18
2534 2578 2.906389 TCAGGTAGTATGCCATCCATCC 59.094 50.000 0.00 0.00 46.86 3.51
2555 2599 2.726821 GAGGATCAGGGAAACAATGCA 58.273 47.619 0.00 0.00 33.17 3.96
2581 2625 0.178921 TCTGAGGTTGGCTCTCCTGT 60.179 55.000 1.01 0.00 33.83 4.00
2734 2779 4.619973 TCAGAAACATTTTCATGTGTGCC 58.380 39.130 1.72 0.00 43.34 5.01
2972 3017 4.616143 CGCACAGTGTATGTCTAGTGAAGT 60.616 45.833 1.61 0.00 41.41 3.01
2984 3029 5.163652 TGTCTAGTGAAGTATCATGTGTCCG 60.164 44.000 0.00 0.00 38.01 4.79
3245 3841 5.727630 ACTATTGACCCCCATATCTACACT 58.272 41.667 0.00 0.00 0.00 3.55
3282 3972 5.552178 ACACAGAAGGATCCAAAGTAAGAC 58.448 41.667 15.82 0.00 0.00 3.01
3304 3994 4.823989 ACTTCATCTTTCAACACAGAAGGG 59.176 41.667 0.00 0.00 36.29 3.95
3484 4175 3.759418 CCTACACTACACACTCACATCG 58.241 50.000 0.00 0.00 0.00 3.84
3488 4179 2.600420 CACTACACACTCACATCGATGC 59.400 50.000 25.11 0.00 0.00 3.91
3530 4225 7.085746 TCATGATCATGTTGCTTGTAAACTTG 58.914 34.615 30.01 5.26 39.72 3.16
3563 4300 5.793817 TCGACTTCTTCTCATTTGAATGGA 58.206 37.500 4.05 0.00 37.03 3.41
3564 4301 6.230472 TCGACTTCTTCTCATTTGAATGGAA 58.770 36.000 4.05 5.90 37.03 3.53
3565 4302 6.147821 TCGACTTCTTCTCATTTGAATGGAAC 59.852 38.462 4.05 0.00 37.03 3.62
3566 4303 6.148480 CGACTTCTTCTCATTTGAATGGAACT 59.852 38.462 4.05 0.00 37.03 3.01
3567 4304 7.331934 CGACTTCTTCTCATTTGAATGGAACTA 59.668 37.037 4.05 0.00 37.03 2.24
3568 4305 8.329203 ACTTCTTCTCATTTGAATGGAACTAC 57.671 34.615 4.05 0.00 37.03 2.73
3569 4306 6.968131 TCTTCTCATTTGAATGGAACTACG 57.032 37.500 4.05 0.00 37.03 3.51
3570 4307 5.874810 TCTTCTCATTTGAATGGAACTACGG 59.125 40.000 4.05 0.00 37.03 4.02
3571 4308 5.414789 TCTCATTTGAATGGAACTACGGA 57.585 39.130 4.05 0.00 37.03 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.947652 GCCTTCATGCTAGCATCTTCAA 59.052 45.455 27.34 15.51 33.90 2.69
47 48 4.441792 CATGATCTATGGACGGTGTTTGA 58.558 43.478 0.00 0.00 32.95 2.69
124 125 9.979578 TTAACAGAATTGTAAAAATGCTCATGT 57.020 25.926 0.00 0.00 36.23 3.21
197 198 5.824904 AATTCAGAAATCATGGAAGACCG 57.175 39.130 0.00 0.00 39.42 4.79
237 238 6.474140 TTTCATATCTCCTAGCAAACCGTA 57.526 37.500 0.00 0.00 0.00 4.02
239 240 6.073003 GGAATTTCATATCTCCTAGCAAACCG 60.073 42.308 0.00 0.00 0.00 4.44
267 268 0.888285 GTAGGCTGGCATCCATGAGC 60.888 60.000 10.44 0.00 30.82 4.26
277 278 1.272554 ACACCCCTAAGTAGGCTGGC 61.273 60.000 0.00 0.00 42.26 4.85
471 473 6.328410 TCTCTCATGGTGTAATCAATGGAGAT 59.672 38.462 0.00 0.00 0.00 2.75
492 495 2.823984 CTTGCATGCTTCTCGATCTCT 58.176 47.619 20.33 0.00 0.00 3.10
524 529 6.266103 TGAGAAAGCTTTGAAAATCTCATGGT 59.734 34.615 18.30 0.00 38.59 3.55
556 561 1.304217 ACTCTCCCCACACGACGAT 60.304 57.895 0.00 0.00 0.00 3.73
591 596 4.253685 CGACATTCTTCCCACACAATAGT 58.746 43.478 0.00 0.00 0.00 2.12
596 601 0.948623 CGCGACATTCTTCCCACACA 60.949 55.000 0.00 0.00 0.00 3.72
607 612 3.958822 GACCCGACGACGCGACATT 62.959 63.158 15.93 0.00 38.29 2.71
608 613 4.471726 GACCCGACGACGCGACAT 62.472 66.667 15.93 0.00 38.29 3.06
627 632 1.671901 AACTTGGTGCCCAACAACGG 61.672 55.000 2.84 0.00 39.66 4.44
666 671 2.046023 CGCCTCACTCCATGGCAA 60.046 61.111 6.96 0.00 46.39 4.52
674 679 1.261619 CTCACACAAAACGCCTCACTC 59.738 52.381 0.00 0.00 0.00 3.51
677 682 1.771073 CGCTCACACAAAACGCCTCA 61.771 55.000 0.00 0.00 0.00 3.86
684 689 2.250939 CGGGCTCGCTCACACAAAA 61.251 57.895 0.00 0.00 0.00 2.44
704 709 4.014569 TCAATTCAATTCACTCGACCCA 57.985 40.909 0.00 0.00 0.00 4.51
731 736 0.178813 ACACATAACCCCCTCCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
750 755 2.447811 ACTGGCCACTTAACCCCTTTTA 59.552 45.455 0.00 0.00 0.00 1.52
834 840 2.100749 GGTCTTTTGTTTGGGTCACTGG 59.899 50.000 0.00 0.00 0.00 4.00
838 844 3.020984 GTCAGGTCTTTTGTTTGGGTCA 58.979 45.455 0.00 0.00 0.00 4.02
839 845 2.361119 GGTCAGGTCTTTTGTTTGGGTC 59.639 50.000 0.00 0.00 0.00 4.46
840 846 2.291930 TGGTCAGGTCTTTTGTTTGGGT 60.292 45.455 0.00 0.00 0.00 4.51
887 911 3.551454 CCTCGTTTCTCACACTTCGGTTA 60.551 47.826 0.00 0.00 0.00 2.85
895 919 2.027625 CGGCCCTCGTTTCTCACAC 61.028 63.158 0.00 0.00 0.00 3.82
952 976 2.806244 GGCGTGTCTCTCTATCTCTCTC 59.194 54.545 0.00 0.00 0.00 3.20
960 984 3.506096 CGCCGGCGTGTCTCTCTA 61.506 66.667 39.71 0.00 34.35 2.43
1041 1073 1.219124 GATGAAGAGGACGCTGGCA 59.781 57.895 0.00 0.00 0.00 4.92
1369 1401 6.431198 TTCCAAAATGCGATTAGTTCTACC 57.569 37.500 0.00 0.00 0.00 3.18
1411 1443 0.584785 CAAACAGTGCGCGATCGATG 60.585 55.000 21.57 11.52 38.10 3.84
1426 1458 4.755411 TCACCGATCTGATTCTACCAAAC 58.245 43.478 0.00 0.00 0.00 2.93
1532 1564 7.923888 AGCACTTATAGCAACACTCAAATATG 58.076 34.615 0.00 0.00 0.00 1.78
1619 1658 3.788227 TTGACTTAGGCACCAACATCT 57.212 42.857 0.00 0.00 0.00 2.90
1681 1720 6.375455 CCATGGTTCAGTAGCAAAAATCTAGT 59.625 38.462 2.57 0.00 37.87 2.57
1746 1785 3.191581 AGACTCCACATCGAACTAGTGTG 59.808 47.826 8.76 8.76 42.10 3.82
1850 1890 1.523938 GAACATAGAGGCACGCCCC 60.524 63.158 3.95 0.00 36.58 5.80
1886 1927 5.842339 ACAGTTCCCCCATCTTTCATATTT 58.158 37.500 0.00 0.00 0.00 1.40
1917 1958 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1918 1959 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1919 1960 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1920 1961 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1921 1962 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1922 1963 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1923 1964 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
1924 1965 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
1925 1966 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
1926 1967 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
1927 1968 4.996788 TCTAGGACAAGTATTTCCGGAC 57.003 45.455 1.83 0.00 36.95 4.79
1928 1969 6.346096 CATTTCTAGGACAAGTATTTCCGGA 58.654 40.000 0.00 0.00 36.95 5.14
1929 1970 5.527582 CCATTTCTAGGACAAGTATTTCCGG 59.472 44.000 0.00 0.00 36.95 5.14
1930 1971 6.346096 TCCATTTCTAGGACAAGTATTTCCG 58.654 40.000 0.00 0.00 36.95 4.30
1931 1972 7.775561 ACATCCATTTCTAGGACAAGTATTTCC 59.224 37.037 0.00 0.00 38.13 3.13
1932 1973 8.738645 ACATCCATTTCTAGGACAAGTATTTC 57.261 34.615 0.00 0.00 38.13 2.17
1935 1976 9.386122 AGATACATCCATTTCTAGGACAAGTAT 57.614 33.333 0.00 0.00 38.13 2.12
1936 1977 8.783660 AGATACATCCATTTCTAGGACAAGTA 57.216 34.615 0.00 0.00 38.13 2.24
1937 1978 7.682787 AGATACATCCATTTCTAGGACAAGT 57.317 36.000 0.00 0.00 38.13 3.16
1938 1979 9.083422 TCTAGATACATCCATTTCTAGGACAAG 57.917 37.037 6.10 0.00 38.67 3.16
1939 1980 8.861086 GTCTAGATACATCCATTTCTAGGACAA 58.139 37.037 0.00 0.00 38.67 3.18
1940 1981 8.228206 AGTCTAGATACATCCATTTCTAGGACA 58.772 37.037 0.00 0.00 38.67 4.02
1941 1982 8.644374 AGTCTAGATACATCCATTTCTAGGAC 57.356 38.462 0.00 0.00 38.67 3.85
1980 2021 9.831737 CCTCGAAATGGATAAAATTGATGTATC 57.168 33.333 0.00 0.00 0.00 2.24
1981 2022 9.573166 TCCTCGAAATGGATAAAATTGATGTAT 57.427 29.630 0.00 0.00 0.00 2.29
1982 2023 8.836413 GTCCTCGAAATGGATAAAATTGATGTA 58.164 33.333 0.00 0.00 35.87 2.29
1983 2024 7.339212 TGTCCTCGAAATGGATAAAATTGATGT 59.661 33.333 0.00 0.00 35.87 3.06
1984 2025 7.706159 TGTCCTCGAAATGGATAAAATTGATG 58.294 34.615 0.00 0.00 35.87 3.07
1985 2026 7.880160 TGTCCTCGAAATGGATAAAATTGAT 57.120 32.000 0.00 0.00 35.87 2.57
1986 2027 7.393234 ACTTGTCCTCGAAATGGATAAAATTGA 59.607 33.333 3.54 0.00 34.98 2.57
1987 2028 7.538575 ACTTGTCCTCGAAATGGATAAAATTG 58.461 34.615 3.54 0.00 34.98 2.32
1988 2029 7.703058 ACTTGTCCTCGAAATGGATAAAATT 57.297 32.000 3.54 0.00 34.98 1.82
1989 2030 8.980481 ATACTTGTCCTCGAAATGGATAAAAT 57.020 30.769 3.54 0.00 34.98 1.82
1990 2031 8.801882 AATACTTGTCCTCGAAATGGATAAAA 57.198 30.769 3.54 0.00 34.98 1.52
1991 2032 8.801882 AAATACTTGTCCTCGAAATGGATAAA 57.198 30.769 3.54 0.00 34.98 1.40
1992 2033 8.801882 AAAATACTTGTCCTCGAAATGGATAA 57.198 30.769 0.00 0.00 35.87 1.75
1993 2034 8.673711 CAAAAATACTTGTCCTCGAAATGGATA 58.326 33.333 0.00 0.00 35.87 2.59
1994 2035 7.362920 CCAAAAATACTTGTCCTCGAAATGGAT 60.363 37.037 0.00 0.00 35.87 3.41
1995 2036 6.072175 CCAAAAATACTTGTCCTCGAAATGGA 60.072 38.462 0.00 0.00 0.00 3.41
1996 2037 6.072175 TCCAAAAATACTTGTCCTCGAAATGG 60.072 38.462 0.00 0.00 0.00 3.16
1997 2038 6.801862 GTCCAAAAATACTTGTCCTCGAAATG 59.198 38.462 0.00 0.00 0.00 2.32
1998 2039 6.348213 CGTCCAAAAATACTTGTCCTCGAAAT 60.348 38.462 0.00 0.00 0.00 2.17
1999 2040 5.049954 CGTCCAAAAATACTTGTCCTCGAAA 60.050 40.000 0.00 0.00 0.00 3.46
2000 2041 4.449743 CGTCCAAAAATACTTGTCCTCGAA 59.550 41.667 0.00 0.00 0.00 3.71
2001 2042 3.991773 CGTCCAAAAATACTTGTCCTCGA 59.008 43.478 0.00 0.00 0.00 4.04
2002 2043 3.124636 CCGTCCAAAAATACTTGTCCTCG 59.875 47.826 0.00 0.00 0.00 4.63
2003 2044 4.320870 TCCGTCCAAAAATACTTGTCCTC 58.679 43.478 0.00 0.00 0.00 3.71
2004 2045 4.202430 ACTCCGTCCAAAAATACTTGTCCT 60.202 41.667 0.00 0.00 0.00 3.85
2005 2046 4.070009 ACTCCGTCCAAAAATACTTGTCC 58.930 43.478 0.00 0.00 0.00 4.02
2006 2047 4.753107 TCACTCCGTCCAAAAATACTTGTC 59.247 41.667 0.00 0.00 0.00 3.18
2007 2048 4.710324 TCACTCCGTCCAAAAATACTTGT 58.290 39.130 0.00 0.00 0.00 3.16
2008 2049 4.755123 ACTCACTCCGTCCAAAAATACTTG 59.245 41.667 0.00 0.00 0.00 3.16
2009 2050 4.969484 ACTCACTCCGTCCAAAAATACTT 58.031 39.130 0.00 0.00 0.00 2.24
2010 2051 4.618920 ACTCACTCCGTCCAAAAATACT 57.381 40.909 0.00 0.00 0.00 2.12
2011 2052 4.868734 CCTACTCACTCCGTCCAAAAATAC 59.131 45.833 0.00 0.00 0.00 1.89
2012 2053 4.529377 ACCTACTCACTCCGTCCAAAAATA 59.471 41.667 0.00 0.00 0.00 1.40
2013 2054 3.326880 ACCTACTCACTCCGTCCAAAAAT 59.673 43.478 0.00 0.00 0.00 1.82
2014 2055 2.701951 ACCTACTCACTCCGTCCAAAAA 59.298 45.455 0.00 0.00 0.00 1.94
2015 2056 2.298163 GACCTACTCACTCCGTCCAAAA 59.702 50.000 0.00 0.00 0.00 2.44
2016 2057 1.891150 GACCTACTCACTCCGTCCAAA 59.109 52.381 0.00 0.00 0.00 3.28
2017 2058 1.202964 TGACCTACTCACTCCGTCCAA 60.203 52.381 0.00 0.00 0.00 3.53
2018 2059 0.402887 TGACCTACTCACTCCGTCCA 59.597 55.000 0.00 0.00 0.00 4.02
2019 2060 1.542492 TTGACCTACTCACTCCGTCC 58.458 55.000 0.00 0.00 0.00 4.79
2020 2061 3.512680 CATTTGACCTACTCACTCCGTC 58.487 50.000 0.00 0.00 0.00 4.79
2021 2062 2.353803 GCATTTGACCTACTCACTCCGT 60.354 50.000 0.00 0.00 0.00 4.69
2022 2063 2.093973 AGCATTTGACCTACTCACTCCG 60.094 50.000 0.00 0.00 0.00 4.63
2023 2064 3.526534 GAGCATTTGACCTACTCACTCC 58.473 50.000 0.00 0.00 0.00 3.85
2024 2065 3.182967 CGAGCATTTGACCTACTCACTC 58.817 50.000 0.00 0.00 0.00 3.51
2025 2066 2.675317 GCGAGCATTTGACCTACTCACT 60.675 50.000 0.00 0.00 0.00 3.41
2026 2067 1.661112 GCGAGCATTTGACCTACTCAC 59.339 52.381 0.00 0.00 0.00 3.51
2027 2068 1.405526 GGCGAGCATTTGACCTACTCA 60.406 52.381 0.00 0.00 0.00 3.41
2028 2069 1.134670 AGGCGAGCATTTGACCTACTC 60.135 52.381 0.00 0.00 0.00 2.59
2029 2070 0.905357 AGGCGAGCATTTGACCTACT 59.095 50.000 0.00 0.00 0.00 2.57
2030 2071 1.009829 CAGGCGAGCATTTGACCTAC 58.990 55.000 0.00 0.00 0.00 3.18
2045 2086 0.809241 CCTTCTCATCGAGCACAGGC 60.809 60.000 0.00 0.00 41.61 4.85
2048 2089 1.404717 GCTTCCTTCTCATCGAGCACA 60.405 52.381 0.00 0.00 0.00 4.57
2073 2114 8.260114 TCAGAATGCATCAACTATTACTCAGAA 58.740 33.333 0.00 0.00 34.76 3.02
2086 2127 4.746535 ATGGCAATTCAGAATGCATCAA 57.253 36.364 0.00 0.00 44.32 2.57
2140 2181 8.943594 ATAAAGGTTTTGTGTAATCAGGGTAA 57.056 30.769 0.00 0.00 0.00 2.85
2203 2244 4.022329 TCATCTTCGTACTCTGCAAGACAA 60.022 41.667 3.37 0.00 38.67 3.18
2280 2321 1.293924 CTGCTTTAGCCAGATGTCGG 58.706 55.000 0.00 0.00 41.18 4.79
2457 2498 3.119424 TGTGACGATGTAGTTGGCGAATA 60.119 43.478 0.00 0.00 0.00 1.75
2468 2509 4.156373 TCGTTATGAACCTGTGACGATGTA 59.844 41.667 0.00 0.00 34.98 2.29
2534 2578 1.672881 GCATTGTTTCCCTGATCCTCG 59.327 52.381 0.00 0.00 0.00 4.63
2555 2599 4.722193 CCAACCTCAGATGGCGTT 57.278 55.556 0.00 0.00 0.00 4.84
2581 2625 4.349636 TCCCTGTCTGGTTGTTATTCTCAA 59.650 41.667 0.00 0.00 0.00 3.02
2734 2779 4.637276 TGTAACATATAACGGCCATCCTG 58.363 43.478 2.24 0.00 0.00 3.86
3229 3824 3.469771 TGAGGTAGTGTAGATATGGGGGT 59.530 47.826 0.00 0.00 0.00 4.95
3245 3841 5.248248 TCCTTCTGTGTTGAATGATGAGGTA 59.752 40.000 0.00 0.00 0.00 3.08
3282 3972 4.823989 ACCCTTCTGTGTTGAAAGATGAAG 59.176 41.667 0.00 0.00 0.00 3.02
3304 3994 9.774742 GTTGAATGGTGAAATCATACTTTAGAC 57.225 33.333 0.00 0.00 0.00 2.59
3372 4062 6.031751 ACAGTTAACAAAGGACAGCAAAAA 57.968 33.333 8.61 0.00 0.00 1.94
3373 4063 5.652994 ACAGTTAACAAAGGACAGCAAAA 57.347 34.783 8.61 0.00 0.00 2.44
3374 4064 5.883673 AGTACAGTTAACAAAGGACAGCAAA 59.116 36.000 8.61 0.00 0.00 3.68
3382 4073 5.163703 TGTGTGCAAGTACAGTTAACAAAGG 60.164 40.000 8.61 0.00 0.00 3.11
3484 4175 6.866010 TGAACATAACAGGTGATATGCATC 57.134 37.500 0.19 0.00 35.12 3.91
3488 4179 8.611654 TGATCATGAACATAACAGGTGATATG 57.388 34.615 0.00 5.87 36.99 1.78
3530 4225 2.167487 AGAAGAAGTCGAAGGGATCAGC 59.833 50.000 0.00 0.00 0.00 4.26
3563 4300 6.544931 TCATACATGTAGCTACTTCCGTAGTT 59.455 38.462 23.84 4.69 44.02 2.24
3564 4301 6.060136 TCATACATGTAGCTACTTCCGTAGT 58.940 40.000 23.84 13.42 44.02 2.73
3565 4302 6.555812 TCATACATGTAGCTACTTCCGTAG 57.444 41.667 23.84 8.61 44.77 3.51
3566 4303 6.713450 TGATCATACATGTAGCTACTTCCGTA 59.287 38.462 23.84 17.85 0.00 4.02
3567 4304 5.535030 TGATCATACATGTAGCTACTTCCGT 59.465 40.000 23.84 16.48 0.00 4.69
3568 4305 6.013842 TGATCATACATGTAGCTACTTCCG 57.986 41.667 23.84 12.01 0.00 4.30
3569 4306 7.332926 CCATTGATCATACATGTAGCTACTTCC 59.667 40.741 23.84 0.00 0.00 3.46
3570 4307 7.332926 CCCATTGATCATACATGTAGCTACTTC 59.667 40.741 23.84 5.60 0.00 3.01
3571 4308 7.164122 CCCATTGATCATACATGTAGCTACTT 58.836 38.462 23.84 15.44 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.