Multiple sequence alignment - TraesCS4B01G133100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G133100 chr4B 100.000 6950 0 0 1 6950 172770782 172777731 0.000000e+00 12835.0
1 TraesCS4B01G133100 chr4B 92.054 969 51 12 5987 6950 606556092 606557039 0.000000e+00 1339.0
2 TraesCS4B01G133100 chr4B 72.530 506 128 11 6389 6887 611311477 611311978 3.360000e-33 154.0
3 TraesCS4B01G133100 chr4B 98.780 82 1 0 566 647 172771258 172771339 5.620000e-31 147.0
4 TraesCS4B01G133100 chr4B 98.780 82 1 0 477 558 172771347 172771428 5.620000e-31 147.0
5 TraesCS4B01G133100 chr4B 93.151 73 5 0 2533 2605 300801353 300801425 2.650000e-19 108.0
6 TraesCS4B01G133100 chr4D 94.732 2392 84 13 3597 5985 112194558 112196910 0.000000e+00 3681.0
7 TraesCS4B01G133100 chr4D 94.505 1729 55 18 934 2646 112191891 112193595 0.000000e+00 2630.0
8 TraesCS4B01G133100 chr4D 94.326 423 19 4 2626 3047 112193621 112194039 1.630000e-180 643.0
9 TraesCS4B01G133100 chr4D 89.791 382 32 5 3315 3692 112194210 112194588 3.770000e-132 483.0
10 TraesCS4B01G133100 chr4D 95.977 174 6 1 3114 3286 13359913 13360086 1.480000e-71 281.0
11 TraesCS4B01G133100 chr4D 81.016 374 42 16 44 400 112191141 112191502 3.190000e-68 270.0
12 TraesCS4B01G133100 chr4D 91.781 73 6 0 2533 2605 242937226 242937298 1.230000e-17 102.0
13 TraesCS4B01G133100 chr4D 96.226 53 2 0 3067 3119 112194037 112194089 3.450000e-13 87.9
14 TraesCS4B01G133100 chr4A 93.900 2459 111 17 3541 5985 464992042 464989609 0.000000e+00 3674.0
15 TraesCS4B01G133100 chr4A 91.447 2163 90 34 934 3052 464994757 464992646 0.000000e+00 2881.0
16 TraesCS4B01G133100 chr4A 88.235 289 27 5 3279 3563 464992338 464992053 8.630000e-89 339.0
17 TraesCS4B01G133100 chr4A 80.893 403 50 14 15 400 464998928 464998536 6.820000e-75 292.0
18 TraesCS4B01G133100 chr4A 93.333 45 3 0 5985 6029 38179295 38179339 4.500000e-07 67.6
19 TraesCS4B01G133100 chr7D 89.168 877 79 12 5985 6853 83162006 83161138 0.000000e+00 1079.0
20 TraesCS4B01G133100 chr7D 92.432 185 12 2 3110 3293 213380416 213380233 5.350000e-66 263.0
21 TraesCS4B01G133100 chr7D 83.556 225 23 11 5991 6214 315665835 315665624 1.530000e-46 198.0
22 TraesCS4B01G133100 chr7D 95.918 98 4 0 6850 6947 83121417 83121320 7.220000e-35 159.0
23 TraesCS4B01G133100 chr5D 85.995 764 96 7 1528 2290 224328502 224327749 0.000000e+00 808.0
24 TraesCS4B01G133100 chr5D 96.429 168 5 1 3117 3283 322385097 322384930 6.870000e-70 276.0
25 TraesCS4B01G133100 chr5D 96.429 168 4 2 3114 3280 451543514 451543680 6.870000e-70 276.0
26 TraesCS4B01G133100 chr5D 90.805 174 16 0 2689 2862 224327380 224327207 4.190000e-57 233.0
27 TraesCS4B01G133100 chr5D 83.920 199 32 0 4457 4655 224326668 224326470 2.560000e-44 191.0
28 TraesCS4B01G133100 chr5D 89.091 55 4 2 6002 6056 542596178 542596230 4.500000e-07 67.6
29 TraesCS4B01G133100 chr5B 85.752 765 100 4 1526 2290 247057617 247058372 0.000000e+00 800.0
30 TraesCS4B01G133100 chr5B 94.828 174 7 2 3108 3280 657711273 657711445 3.190000e-68 270.0
31 TraesCS4B01G133100 chr5B 89.080 174 19 0 2689 2862 247058740 247058913 4.220000e-52 217.0
32 TraesCS4B01G133100 chr5B 83.168 202 34 0 4454 4655 247059433 247059634 1.190000e-42 185.0
33 TraesCS4B01G133100 chr5B 83.019 106 18 0 6396 6501 372564364 372564259 5.740000e-16 97.1
34 TraesCS4B01G133100 chr5B 92.500 40 3 0 412 451 584245388 584245349 2.710000e-04 58.4
35 TraesCS4B01G133100 chr5A 85.752 765 100 5 1526 2290 299068952 299068197 0.000000e+00 800.0
36 TraesCS4B01G133100 chr5A 90.173 173 17 0 2690 2862 299067827 299067655 7.010000e-55 226.0
37 TraesCS4B01G133100 chr5A 84.422 199 31 0 4457 4655 299067088 299066890 5.500000e-46 196.0
38 TraesCS4B01G133100 chr2D 95.882 170 6 1 3115 3283 24312359 24312190 2.470000e-69 274.0
39 TraesCS4B01G133100 chr2D 95.349 172 7 1 3115 3285 161907018 161906847 8.880000e-69 272.0
40 TraesCS4B01G133100 chr2D 75.047 533 119 14 1534 2059 77383224 77382699 1.170000e-57 235.0
41 TraesCS4B01G133100 chr2D 90.551 127 12 0 663 789 349487886 349487760 1.200000e-37 169.0
42 TraesCS4B01G133100 chr2D 77.160 162 36 1 4457 4617 77381017 77380856 7.420000e-15 93.5
43 TraesCS4B01G133100 chr3D 95.858 169 6 1 3113 3280 79558709 79558541 8.880000e-69 272.0
44 TraesCS4B01G133100 chr3D 96.970 33 1 0 3341 3373 100467693 100467725 1.000000e-03 56.5
45 TraesCS4B01G133100 chr2B 94.886 176 6 3 3110 3283 379712798 379712624 8.880000e-69 272.0
46 TraesCS4B01G133100 chr2B 75.422 533 117 14 1534 2059 119633729 119633204 5.380000e-61 246.0
47 TraesCS4B01G133100 chr2B 88.095 126 10 4 6302 6426 754615117 754614996 2.020000e-30 145.0
48 TraesCS4B01G133100 chr2B 77.778 162 35 1 4457 4617 119631539 119631378 1.600000e-16 99.0
49 TraesCS4B01G133100 chr2A 76.015 517 110 14 1544 2053 78560736 78561245 8.950000e-64 255.0
50 TraesCS4B01G133100 chr2A 76.966 178 38 3 4442 4617 78562911 78563087 1.600000e-16 99.0
51 TraesCS4B01G133100 chr7B 76.942 399 71 11 6390 6785 590183438 590183058 2.540000e-49 207.0
52 TraesCS4B01G133100 chr7B 92.188 128 9 1 663 789 320319900 320320027 5.540000e-41 180.0
53 TraesCS4B01G133100 chr7B 90.909 132 9 3 668 796 239209377 239209508 2.580000e-39 174.0
54 TraesCS4B01G133100 chr7B 90.152 132 10 3 659 789 720120581 720120710 1.200000e-37 169.0
55 TraesCS4B01G133100 chr6B 89.781 137 10 4 660 793 387416405 387416540 9.270000e-39 172.0
56 TraesCS4B01G133100 chr6B 89.051 137 11 4 668 801 171052380 171052245 4.310000e-37 167.0
57 TraesCS4B01G133100 chr3A 88.356 146 12 5 660 802 633802355 633802212 3.330000e-38 171.0
58 TraesCS4B01G133100 chr1B 90.152 132 9 4 660 789 682006542 682006671 1.200000e-37 169.0
59 TraesCS4B01G133100 chr1B 87.500 64 8 0 3339 3402 398382945 398382882 2.690000e-09 75.0
60 TraesCS4B01G133100 chr6A 90.000 130 11 2 661 789 135929009 135929137 4.310000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G133100 chr4B 172770782 172777731 6949 False 12835.000000 12835 100.000000 1 6950 1 chr4B.!!$F1 6949
1 TraesCS4B01G133100 chr4B 606556092 606557039 947 False 1339.000000 1339 92.054000 5987 6950 1 chr4B.!!$F3 963
2 TraesCS4B01G133100 chr4D 112191141 112196910 5769 False 1299.150000 3681 91.766000 44 5985 6 chr4D.!!$F3 5941
3 TraesCS4B01G133100 chr4A 464989609 464998928 9319 True 1796.500000 3674 88.618750 15 5985 4 chr4A.!!$R1 5970
4 TraesCS4B01G133100 chr7D 83161138 83162006 868 True 1079.000000 1079 89.168000 5985 6853 1 chr7D.!!$R2 868
5 TraesCS4B01G133100 chr5D 224326470 224328502 2032 True 410.666667 808 86.906667 1528 4655 3 chr5D.!!$R2 3127
6 TraesCS4B01G133100 chr5B 247057617 247059634 2017 False 400.666667 800 86.000000 1526 4655 3 chr5B.!!$F2 3129
7 TraesCS4B01G133100 chr5A 299066890 299068952 2062 True 407.333333 800 86.782333 1526 4655 3 chr5A.!!$R1 3129


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 190 0.318120 CCGTTTGCATGCCTTCCTTT 59.682 50.0 16.68 0.00 0.00 3.11 F
489 504 0.593618 GCCTCTCGTCATCGATGCTA 59.406 55.0 20.81 1.10 45.21 3.49 F
1506 4996 0.033894 AGGAGGAGGAGGAAGACGAC 60.034 60.0 0.00 0.00 0.00 4.34 F
1508 4998 0.392729 GAGGAGGAGGAAGACGACGA 60.393 60.0 0.00 0.00 0.00 4.20 F
1509 4999 0.393267 AGGAGGAGGAAGACGACGAG 60.393 60.0 0.00 0.00 0.00 4.18 F
2650 6299 0.732571 CTCTCTGTCTCTCTCGCACC 59.267 60.0 0.00 0.00 0.00 5.01 F
3059 6730 0.688487 TTGTTACTCCCTTGGGACGG 59.312 55.0 3.91 0.00 0.00 4.79 F
3647 7589 0.982852 TGGTCCTACTGATGGCCCAG 60.983 60.0 0.00 3.41 39.93 4.45 F
4056 8066 0.396811 CACCCGGAAAGAGTGGAAGT 59.603 55.0 0.73 0.00 0.00 3.01 F
5719 9739 1.831580 GAAGCTGGCTGAAGGAACAT 58.168 50.0 0.00 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1013 4483 0.323542 GAGAGGAGTTGTCGGGGAGA 60.324 60.000 0.00 0.00 0.00 3.71 R
1776 5266 0.467290 GGAAGTTGTTGGCCCAGTGA 60.467 55.000 0.00 0.00 0.00 3.41 R
3054 6725 0.531200 CACTTGTACTCCCTCCGTCC 59.469 60.000 0.00 0.00 0.00 4.79 R
3056 6727 1.075050 TCTCACTTGTACTCCCTCCGT 59.925 52.381 0.00 0.00 0.00 4.69 R
3058 6729 2.234168 GGTTCTCACTTGTACTCCCTCC 59.766 54.545 0.00 0.00 0.00 4.30 R
3863 7873 0.613777 CGAGCACCCCCTTAGTCTTT 59.386 55.000 0.00 0.00 0.00 2.52 R
3935 7945 1.081892 CCTGGAGTGAAATCGCACAG 58.918 55.000 10.07 10.07 41.19 3.66 R
5265 9278 1.003355 CAGGGTGATGCCGTGTTCT 60.003 57.895 0.00 0.00 45.42 3.01 R
5740 9760 1.154205 CGTGCCATTGATCTCCGACC 61.154 60.000 0.00 0.00 0.00 4.79 R
6584 10614 1.492176 AGTGCTGGTGGGATTATCAGG 59.508 52.381 0.00 0.00 0.00 3.86 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.928801 ACAAACAATTTGCCCCCTTC 57.071 45.000 1.23 0.00 44.39 3.46
39 40 2.027100 CCCCCTTCTCTCCACTTGTAAC 60.027 54.545 0.00 0.00 0.00 2.50
40 41 2.907042 CCCCTTCTCTCCACTTGTAACT 59.093 50.000 0.00 0.00 0.00 2.24
45 46 6.234177 CCTTCTCTCCACTTGTAACTGAATT 58.766 40.000 0.00 0.00 0.00 2.17
104 108 2.362077 GGAGCAATGTGTTGTCCAAGTT 59.638 45.455 0.00 0.00 36.44 2.66
106 110 4.432712 GAGCAATGTGTTGTCCAAGTTTT 58.567 39.130 0.00 0.00 37.65 2.43
133 138 1.631405 CATGGTTCTCCTTTTGGCCA 58.369 50.000 0.00 0.00 40.12 5.36
136 141 1.248486 GGTTCTCCTTTTGGCCACTC 58.752 55.000 3.88 0.00 40.12 3.51
139 144 0.401738 TCTCCTTTTGGCCACTCCTG 59.598 55.000 3.88 0.00 40.12 3.86
182 188 2.639327 GCCGTTTGCATGCCTTCCT 61.639 57.895 16.68 0.00 40.77 3.36
183 189 1.966762 CCGTTTGCATGCCTTCCTT 59.033 52.632 16.68 0.00 0.00 3.36
184 190 0.318120 CCGTTTGCATGCCTTCCTTT 59.682 50.000 16.68 0.00 0.00 3.11
185 191 1.270252 CCGTTTGCATGCCTTCCTTTT 60.270 47.619 16.68 0.00 0.00 2.27
186 192 2.482864 CGTTTGCATGCCTTCCTTTTT 58.517 42.857 16.68 0.00 0.00 1.94
222 228 4.101448 GACCAGCGGCCACCATCT 62.101 66.667 2.24 0.00 0.00 2.90
238 244 4.024556 CACCATCTGGCGATAAGAAATCAC 60.025 45.833 0.00 0.00 39.32 3.06
251 257 4.330944 AGAAATCACAGGACACGTGTTA 57.669 40.909 24.26 5.04 35.79 2.41
272 278 8.201554 TGTTACTCTAACATGATCTGAAATGC 57.798 34.615 0.00 0.00 43.23 3.56
273 279 7.280876 TGTTACTCTAACATGATCTGAAATGCC 59.719 37.037 0.00 0.00 43.23 4.40
275 281 6.363065 ACTCTAACATGATCTGAAATGCCAT 58.637 36.000 0.00 0.00 0.00 4.40
277 283 7.443575 ACTCTAACATGATCTGAAATGCCATAC 59.556 37.037 0.00 0.00 0.00 2.39
278 284 7.512130 TCTAACATGATCTGAAATGCCATACT 58.488 34.615 0.00 0.00 0.00 2.12
280 286 7.502120 AACATGATCTGAAATGCCATACTAC 57.498 36.000 0.00 0.00 0.00 2.73
281 287 5.698089 ACATGATCTGAAATGCCATACTACG 59.302 40.000 0.00 0.00 0.00 3.51
282 288 5.276461 TGATCTGAAATGCCATACTACGT 57.724 39.130 0.00 0.00 0.00 3.57
283 289 5.049828 TGATCTGAAATGCCATACTACGTG 58.950 41.667 0.00 0.00 0.00 4.49
284 290 3.792401 TCTGAAATGCCATACTACGTGG 58.208 45.455 0.00 0.00 39.80 4.94
287 293 3.055021 TGAAATGCCATACTACGTGGGAA 60.055 43.478 3.26 0.00 40.60 3.97
288 294 2.910688 ATGCCATACTACGTGGGAAG 57.089 50.000 3.26 0.00 40.60 3.46
292 298 3.199071 TGCCATACTACGTGGGAAGAAAT 59.801 43.478 3.26 0.00 37.22 2.17
294 300 5.071250 TGCCATACTACGTGGGAAGAAATAT 59.929 40.000 3.26 0.00 37.22 1.28
295 301 5.638234 GCCATACTACGTGGGAAGAAATATC 59.362 44.000 3.26 0.00 37.22 1.63
296 302 6.518537 GCCATACTACGTGGGAAGAAATATCT 60.519 42.308 3.26 0.00 37.22 1.98
321 330 7.510549 TCTTCAAAACCAAGAATACTCCAAG 57.489 36.000 0.00 0.00 0.00 3.61
389 404 6.590656 ATTAGGATCCCAACCTATGAACAA 57.409 37.500 8.55 0.00 39.36 2.83
399 414 6.112734 CCAACCTATGAACAATACACTAGCA 58.887 40.000 0.00 0.00 0.00 3.49
400 415 6.767902 CCAACCTATGAACAATACACTAGCAT 59.232 38.462 0.00 0.00 0.00 3.79
401 416 7.283127 CCAACCTATGAACAATACACTAGCATT 59.717 37.037 0.00 0.00 0.00 3.56
402 417 9.325198 CAACCTATGAACAATACACTAGCATTA 57.675 33.333 0.00 0.00 0.00 1.90
403 418 8.888579 ACCTATGAACAATACACTAGCATTAC 57.111 34.615 0.00 0.00 0.00 1.89
404 419 7.931948 ACCTATGAACAATACACTAGCATTACC 59.068 37.037 0.00 0.00 0.00 2.85
405 420 8.150945 CCTATGAACAATACACTAGCATTACCT 58.849 37.037 0.00 0.00 0.00 3.08
406 421 9.197694 CTATGAACAATACACTAGCATTACCTC 57.802 37.037 0.00 0.00 0.00 3.85
407 422 6.346096 TGAACAATACACTAGCATTACCTCC 58.654 40.000 0.00 0.00 0.00 4.30
408 423 5.950544 ACAATACACTAGCATTACCTCCA 57.049 39.130 0.00 0.00 0.00 3.86
409 424 6.500589 ACAATACACTAGCATTACCTCCAT 57.499 37.500 0.00 0.00 0.00 3.41
410 425 6.900194 ACAATACACTAGCATTACCTCCATT 58.100 36.000 0.00 0.00 0.00 3.16
411 426 6.767902 ACAATACACTAGCATTACCTCCATTG 59.232 38.462 0.00 0.00 0.00 2.82
412 427 6.747414 ATACACTAGCATTACCTCCATTGA 57.253 37.500 0.00 0.00 0.00 2.57
413 428 5.435686 ACACTAGCATTACCTCCATTGAA 57.564 39.130 0.00 0.00 0.00 2.69
414 429 5.186198 ACACTAGCATTACCTCCATTGAAC 58.814 41.667 0.00 0.00 0.00 3.18
415 430 5.045578 ACACTAGCATTACCTCCATTGAACT 60.046 40.000 0.00 0.00 0.00 3.01
416 431 6.156256 ACACTAGCATTACCTCCATTGAACTA 59.844 38.462 0.00 0.00 0.00 2.24
417 432 7.047891 CACTAGCATTACCTCCATTGAACTAA 58.952 38.462 0.00 0.00 0.00 2.24
418 433 7.552687 CACTAGCATTACCTCCATTGAACTAAA 59.447 37.037 0.00 0.00 0.00 1.85
419 434 8.107095 ACTAGCATTACCTCCATTGAACTAAAA 58.893 33.333 0.00 0.00 0.00 1.52
420 435 7.158099 AGCATTACCTCCATTGAACTAAAAC 57.842 36.000 0.00 0.00 0.00 2.43
421 436 6.152831 AGCATTACCTCCATTGAACTAAAACC 59.847 38.462 0.00 0.00 0.00 3.27
422 437 6.071616 GCATTACCTCCATTGAACTAAAACCA 60.072 38.462 0.00 0.00 0.00 3.67
423 438 6.887626 TTACCTCCATTGAACTAAAACCAC 57.112 37.500 0.00 0.00 0.00 4.16
424 439 4.798882 ACCTCCATTGAACTAAAACCACA 58.201 39.130 0.00 0.00 0.00 4.17
425 440 5.393866 ACCTCCATTGAACTAAAACCACAT 58.606 37.500 0.00 0.00 0.00 3.21
426 441 5.476945 ACCTCCATTGAACTAAAACCACATC 59.523 40.000 0.00 0.00 0.00 3.06
427 442 5.476599 CCTCCATTGAACTAAAACCACATCA 59.523 40.000 0.00 0.00 0.00 3.07
428 443 6.015519 CCTCCATTGAACTAAAACCACATCAA 60.016 38.462 0.00 0.00 0.00 2.57
429 444 6.980593 TCCATTGAACTAAAACCACATCAAG 58.019 36.000 0.00 0.00 31.14 3.02
430 445 6.549364 TCCATTGAACTAAAACCACATCAAGT 59.451 34.615 0.00 0.00 31.14 3.16
431 446 7.721842 TCCATTGAACTAAAACCACATCAAGTA 59.278 33.333 0.00 0.00 31.14 2.24
432 447 8.522830 CCATTGAACTAAAACCACATCAAGTAT 58.477 33.333 0.00 0.00 31.14 2.12
433 448 9.912634 CATTGAACTAAAACCACATCAAGTATT 57.087 29.630 0.00 0.00 31.14 1.89
435 450 9.959749 TTGAACTAAAACCACATCAAGTATTTC 57.040 29.630 0.00 0.00 0.00 2.17
436 451 9.349713 TGAACTAAAACCACATCAAGTATTTCT 57.650 29.630 0.00 0.00 0.00 2.52
437 452 9.612620 GAACTAAAACCACATCAAGTATTTCTG 57.387 33.333 0.00 0.00 0.00 3.02
438 453 8.918202 ACTAAAACCACATCAAGTATTTCTGA 57.082 30.769 0.00 0.00 0.00 3.27
439 454 9.349713 ACTAAAACCACATCAAGTATTTCTGAA 57.650 29.630 0.00 0.00 0.00 3.02
440 455 9.612620 CTAAAACCACATCAAGTATTTCTGAAC 57.387 33.333 0.00 0.00 0.00 3.18
441 456 7.581213 AAACCACATCAAGTATTTCTGAACA 57.419 32.000 0.00 0.00 0.00 3.18
442 457 7.765695 AACCACATCAAGTATTTCTGAACAT 57.234 32.000 0.00 0.00 0.00 2.71
443 458 8.862325 AACCACATCAAGTATTTCTGAACATA 57.138 30.769 0.00 0.00 0.00 2.29
444 459 8.498054 ACCACATCAAGTATTTCTGAACATAG 57.502 34.615 0.00 0.00 0.00 2.23
445 460 7.554118 ACCACATCAAGTATTTCTGAACATAGG 59.446 37.037 0.00 0.00 0.00 2.57
446 461 7.012704 CCACATCAAGTATTTCTGAACATAGGG 59.987 40.741 0.00 0.00 0.00 3.53
447 462 7.770433 CACATCAAGTATTTCTGAACATAGGGA 59.230 37.037 0.00 0.00 0.00 4.20
448 463 7.989741 ACATCAAGTATTTCTGAACATAGGGAG 59.010 37.037 0.00 0.00 0.00 4.30
449 464 7.496346 TCAAGTATTTCTGAACATAGGGAGT 57.504 36.000 0.00 0.00 0.00 3.85
450 465 8.603898 TCAAGTATTTCTGAACATAGGGAGTA 57.396 34.615 0.00 0.00 0.00 2.59
451 466 9.042450 TCAAGTATTTCTGAACATAGGGAGTAA 57.958 33.333 0.00 0.00 0.00 2.24
452 467 9.838339 CAAGTATTTCTGAACATAGGGAGTAAT 57.162 33.333 0.00 0.00 0.00 1.89
457 472 7.973048 TTCTGAACATAGGGAGTAATACACT 57.027 36.000 0.00 0.00 41.47 3.55
458 473 9.483489 TTTCTGAACATAGGGAGTAATACACTA 57.517 33.333 0.00 0.00 37.72 2.74
459 474 8.693120 TCTGAACATAGGGAGTAATACACTAG 57.307 38.462 0.00 0.00 37.72 2.57
460 475 7.230913 TCTGAACATAGGGAGTAATACACTAGC 59.769 40.741 0.00 0.00 37.72 3.42
461 476 5.961396 ACATAGGGAGTAATACACTAGCG 57.039 43.478 0.00 0.00 37.72 4.26
482 497 4.593864 GCCCGGCCTCTCGTCATC 62.594 72.222 0.00 0.00 0.00 2.92
483 498 4.271816 CCCGGCCTCTCGTCATCG 62.272 72.222 0.00 0.00 38.55 3.84
484 499 3.209812 CCGGCCTCTCGTCATCGA 61.210 66.667 0.00 0.00 44.12 3.59
485 500 2.556459 CCGGCCTCTCGTCATCGAT 61.556 63.158 0.00 0.00 45.21 3.59
486 501 1.371022 CGGCCTCTCGTCATCGATG 60.371 63.158 19.61 19.61 45.21 3.84
488 503 1.361993 GCCTCTCGTCATCGATGCT 59.638 57.895 20.81 0.00 45.21 3.79
489 504 0.593618 GCCTCTCGTCATCGATGCTA 59.406 55.000 20.81 1.10 45.21 3.49
490 505 1.201181 GCCTCTCGTCATCGATGCTAT 59.799 52.381 20.81 0.00 45.21 2.97
491 506 2.420372 GCCTCTCGTCATCGATGCTATA 59.580 50.000 20.81 0.00 45.21 1.31
492 507 3.486708 GCCTCTCGTCATCGATGCTATAG 60.487 52.174 20.81 13.96 45.21 1.31
493 508 3.687212 CCTCTCGTCATCGATGCTATAGT 59.313 47.826 20.81 0.00 45.21 2.12
494 509 4.870991 CCTCTCGTCATCGATGCTATAGTA 59.129 45.833 20.81 0.00 45.21 1.82
499 518 7.764901 TCTCGTCATCGATGCTATAGTATAACT 59.235 37.037 20.81 0.00 45.21 2.24
518 537 9.931210 GTATAACTATTTGTTTCTTCCAATCCG 57.069 33.333 0.00 0.00 39.89 4.18
519 538 5.310720 ACTATTTGTTTCTTCCAATCCGC 57.689 39.130 0.00 0.00 0.00 5.54
520 539 3.592898 ATTTGTTTCTTCCAATCCGCC 57.407 42.857 0.00 0.00 0.00 6.13
521 540 1.988293 TTGTTTCTTCCAATCCGCCA 58.012 45.000 0.00 0.00 0.00 5.69
522 541 2.214376 TGTTTCTTCCAATCCGCCAT 57.786 45.000 0.00 0.00 0.00 4.40
523 542 1.818060 TGTTTCTTCCAATCCGCCATG 59.182 47.619 0.00 0.00 0.00 3.66
524 543 0.817013 TTTCTTCCAATCCGCCATGC 59.183 50.000 0.00 0.00 0.00 4.06
545 564 4.944962 CGAAGAGCATGGACAATGTTAA 57.055 40.909 0.00 0.00 38.65 2.01
546 565 4.901814 CGAAGAGCATGGACAATGTTAAG 58.098 43.478 0.00 0.00 38.65 1.85
547 566 4.631377 CGAAGAGCATGGACAATGTTAAGA 59.369 41.667 0.00 0.00 38.65 2.10
548 567 5.295292 CGAAGAGCATGGACAATGTTAAGAT 59.705 40.000 0.00 0.00 38.65 2.40
549 568 6.510799 CGAAGAGCATGGACAATGTTAAGATC 60.511 42.308 0.00 0.00 38.65 2.75
550 569 5.748402 AGAGCATGGACAATGTTAAGATCA 58.252 37.500 0.00 0.00 38.65 2.92
551 570 5.587844 AGAGCATGGACAATGTTAAGATCAC 59.412 40.000 0.00 0.00 38.65 3.06
552 571 5.503927 AGCATGGACAATGTTAAGATCACT 58.496 37.500 0.00 0.00 38.65 3.41
553 572 5.948162 AGCATGGACAATGTTAAGATCACTT 59.052 36.000 0.00 0.00 38.65 3.16
554 573 6.435277 AGCATGGACAATGTTAAGATCACTTT 59.565 34.615 0.00 0.00 38.65 2.66
555 574 6.749118 GCATGGACAATGTTAAGATCACTTTC 59.251 38.462 0.00 0.00 38.65 2.62
556 575 7.362401 GCATGGACAATGTTAAGATCACTTTCT 60.362 37.037 0.00 0.00 38.65 2.52
557 576 8.517878 CATGGACAATGTTAAGATCACTTTCTT 58.482 33.333 0.00 0.00 39.28 2.52
558 577 9.739276 ATGGACAATGTTAAGATCACTTTCTTA 57.261 29.630 0.00 0.00 37.20 2.10
559 578 9.567776 TGGACAATGTTAAGATCACTTTCTTAA 57.432 29.630 0.00 3.23 42.84 1.85
567 586 8.842358 TTAAGATCACTTTCTTAACAATCCGT 57.158 30.769 0.00 0.00 41.16 4.69
568 587 6.969828 AGATCACTTTCTTAACAATCCGTC 57.030 37.500 0.00 0.00 0.00 4.79
569 588 6.464222 AGATCACTTTCTTAACAATCCGTCA 58.536 36.000 0.00 0.00 0.00 4.35
570 589 7.106239 AGATCACTTTCTTAACAATCCGTCAT 58.894 34.615 0.00 0.00 0.00 3.06
571 590 6.721571 TCACTTTCTTAACAATCCGTCATC 57.278 37.500 0.00 0.00 0.00 2.92
572 591 5.347635 TCACTTTCTTAACAATCCGTCATCG 59.652 40.000 0.00 0.00 0.00 3.84
573 592 5.347635 CACTTTCTTAACAATCCGTCATCGA 59.652 40.000 0.00 0.00 39.71 3.59
574 593 6.036083 CACTTTCTTAACAATCCGTCATCGAT 59.964 38.462 0.00 0.00 39.71 3.59
575 594 5.966636 TTCTTAACAATCCGTCATCGATG 57.033 39.130 19.61 19.61 39.71 3.84
576 595 3.802139 TCTTAACAATCCGTCATCGATGC 59.198 43.478 20.81 14.14 39.71 3.91
577 596 2.315925 AACAATCCGTCATCGATGCT 57.684 45.000 20.81 0.00 39.71 3.79
578 597 3.452755 AACAATCCGTCATCGATGCTA 57.547 42.857 20.81 1.10 39.71 3.49
579 598 3.667497 ACAATCCGTCATCGATGCTAT 57.333 42.857 20.81 7.97 39.71 2.97
580 599 4.783764 ACAATCCGTCATCGATGCTATA 57.216 40.909 20.81 6.66 39.71 1.31
581 600 4.738124 ACAATCCGTCATCGATGCTATAG 58.262 43.478 20.81 9.05 39.71 1.31
582 601 4.218635 ACAATCCGTCATCGATGCTATAGT 59.781 41.667 20.81 9.68 39.71 2.12
583 602 5.414765 ACAATCCGTCATCGATGCTATAGTA 59.585 40.000 20.81 0.00 39.71 1.82
584 603 6.095580 ACAATCCGTCATCGATGCTATAGTAT 59.904 38.462 20.81 2.61 39.71 2.12
585 604 7.282450 ACAATCCGTCATCGATGCTATAGTATA 59.718 37.037 20.81 0.00 39.71 1.47
586 605 7.803279 ATCCGTCATCGATGCTATAGTATAA 57.197 36.000 20.81 0.00 39.71 0.98
587 606 7.012959 TCCGTCATCGATGCTATAGTATAAC 57.987 40.000 20.81 8.33 39.71 1.89
588 607 6.822170 TCCGTCATCGATGCTATAGTATAACT 59.178 38.462 20.81 0.00 39.71 2.24
589 608 7.983484 TCCGTCATCGATGCTATAGTATAACTA 59.017 37.037 20.81 0.00 39.71 2.24
590 609 8.775527 CCGTCATCGATGCTATAGTATAACTAT 58.224 37.037 20.81 5.04 40.74 2.12
644 663 6.034256 GCATGCACAATGTTAAGATCACTTTC 59.966 38.462 14.21 0.00 38.65 2.62
651 670 7.229306 ACAATGTTAAGATCACTTTCTTCTGCA 59.771 33.333 0.00 0.00 37.20 4.41
652 671 7.934855 ATGTTAAGATCACTTTCTTCTGCAT 57.065 32.000 0.00 0.00 37.20 3.96
653 672 7.750229 TGTTAAGATCACTTTCTTCTGCATT 57.250 32.000 0.00 0.00 37.20 3.56
661 680 4.636206 CACTTTCTTCTGCATTAGGGGTAC 59.364 45.833 0.00 0.00 0.00 3.34
668 3386 9.555411 TTCTTCTGCATTAGGGGTACATATATA 57.445 33.333 0.00 0.00 0.00 0.86
669 3387 8.978472 TCTTCTGCATTAGGGGTACATATATAC 58.022 37.037 0.00 0.00 0.00 1.47
670 3388 8.911018 TTCTGCATTAGGGGTACATATATACT 57.089 34.615 0.00 0.00 0.00 2.12
671 3389 8.911018 TCTGCATTAGGGGTACATATATACTT 57.089 34.615 0.00 0.00 0.00 2.24
672 3390 8.978472 TCTGCATTAGGGGTACATATATACTTC 58.022 37.037 0.00 0.00 0.00 3.01
673 3391 8.086143 TGCATTAGGGGTACATATATACTTCC 57.914 38.462 0.00 0.00 0.00 3.46
674 3392 7.904564 TGCATTAGGGGTACATATATACTTCCT 59.095 37.037 10.07 10.07 34.96 3.36
675 3393 8.422566 GCATTAGGGGTACATATATACTTCCTC 58.577 40.741 8.97 0.00 33.70 3.71
681 3399 9.357161 GGGGTACATATATACTTCCTCTATCTG 57.643 40.741 0.00 0.00 0.00 2.90
694 3412 8.816894 ACTTCCTCTATCTGAAAATAGTTGTCA 58.183 33.333 0.00 0.00 32.18 3.58
696 3414 9.823647 TTCCTCTATCTGAAAATAGTTGTCATC 57.176 33.333 0.00 0.00 32.18 2.92
698 3416 9.605275 CCTCTATCTGAAAATAGTTGTCATCAA 57.395 33.333 0.00 0.00 32.18 2.57
703 3421 9.865321 ATCTGAAAATAGTTGTCATCAAAATGG 57.135 29.630 0.00 0.00 35.20 3.16
704 3422 9.076781 TCTGAAAATAGTTGTCATCAAAATGGA 57.923 29.630 0.00 0.00 35.20 3.41
746 3464 9.900710 CTAGAACTAAAATACGTCTAGATGCAT 57.099 33.333 12.04 0.00 0.00 3.96
748 3466 7.868415 AGAACTAAAATACGTCTAGATGCATCC 59.132 37.037 23.06 6.84 0.00 3.51
753 4198 3.914426 ACGTCTAGATGCATCCCTTTT 57.086 42.857 23.06 6.85 0.00 2.27
754 4199 6.665992 ATACGTCTAGATGCATCCCTTTTA 57.334 37.500 23.06 7.69 0.00 1.52
765 4210 9.162733 AGATGCATCCCTTTTATCCATTTTAAT 57.837 29.630 23.06 0.00 0.00 1.40
766 4211 9.211485 GATGCATCCCTTTTATCCATTTTAATG 57.789 33.333 16.23 0.00 36.17 1.90
767 4212 8.316497 TGCATCCCTTTTATCCATTTTAATGA 57.684 30.769 4.07 0.00 38.70 2.57
768 4213 8.203485 TGCATCCCTTTTATCCATTTTAATGAC 58.797 33.333 4.07 0.00 38.70 3.06
769 4214 8.203485 GCATCCCTTTTATCCATTTTAATGACA 58.797 33.333 4.07 0.00 38.70 3.58
772 4217 9.320295 TCCCTTTTATCCATTTTAATGACAAGT 57.680 29.630 4.07 0.00 38.70 3.16
782 4227 9.072294 CCATTTTAATGACAAGTATTTCCGAAC 57.928 33.333 4.07 0.00 38.70 3.95
785 4230 7.655236 TTAATGACAAGTATTTCCGAACGAA 57.345 32.000 0.00 0.00 0.00 3.85
786 4231 5.779806 ATGACAAGTATTTCCGAACGAAG 57.220 39.130 0.00 0.00 0.00 3.79
787 4232 3.991773 TGACAAGTATTTCCGAACGAAGG 59.008 43.478 0.00 0.00 0.00 3.46
788 4233 3.332034 ACAAGTATTTCCGAACGAAGGG 58.668 45.455 0.00 0.00 0.00 3.95
789 4234 3.244318 ACAAGTATTTCCGAACGAAGGGT 60.244 43.478 0.00 0.00 0.00 4.34
790 4235 4.021192 ACAAGTATTTCCGAACGAAGGGTA 60.021 41.667 0.00 0.00 0.00 3.69
791 4236 4.115401 AGTATTTCCGAACGAAGGGTAC 57.885 45.455 0.00 0.00 0.00 3.34
793 4238 3.622166 ATTTCCGAACGAAGGGTACAT 57.378 42.857 0.00 0.00 0.00 2.29
795 4240 4.741321 TTTCCGAACGAAGGGTACATAT 57.259 40.909 0.00 0.00 0.00 1.78
797 4242 6.409524 TTTCCGAACGAAGGGTACATATAT 57.590 37.500 0.00 0.00 0.00 0.86
798 4243 7.523293 TTTCCGAACGAAGGGTACATATATA 57.477 36.000 0.00 0.00 0.00 0.86
800 4245 7.092137 TCCGAACGAAGGGTACATATATATG 57.908 40.000 19.21 19.21 39.55 1.78
801 4246 6.095860 TCCGAACGAAGGGTACATATATATGG 59.904 42.308 23.44 8.30 38.00 2.74
802 4247 6.127535 CCGAACGAAGGGTACATATATATGGT 60.128 42.308 23.44 13.14 38.00 3.55
803 4248 6.971184 CGAACGAAGGGTACATATATATGGTC 59.029 42.308 23.44 15.87 38.00 4.02
804 4249 6.446781 ACGAAGGGTACATATATATGGTCG 57.553 41.667 23.44 20.64 38.00 4.79
805 4250 5.948162 ACGAAGGGTACATATATATGGTCGT 59.052 40.000 23.44 21.11 38.00 4.34
808 4253 6.088541 AGGGTACATATATATGGTCGTCCT 57.911 41.667 23.44 18.15 38.00 3.85
809 4254 6.127793 AGGGTACATATATATGGTCGTCCTC 58.872 44.000 23.44 12.40 38.00 3.71
810 4255 5.008415 GGGTACATATATATGGTCGTCCTCG 59.992 48.000 23.44 0.00 38.00 4.63
813 4258 6.621316 ACATATATATGGTCGTCCTCGATC 57.379 41.667 23.44 0.00 46.10 3.69
820 4265 3.692424 TCGTCCTCGATCGTCCATA 57.308 52.632 15.94 0.00 41.35 2.74
823 4268 2.077627 CGTCCTCGATCGTCCATATCT 58.922 52.381 15.94 0.00 39.71 1.98
825 4270 3.307512 CGTCCTCGATCGTCCATATCTAG 59.692 52.174 15.94 1.20 39.71 2.43
826 4271 3.623960 GTCCTCGATCGTCCATATCTAGG 59.376 52.174 15.94 10.96 37.55 3.02
827 4272 3.518303 TCCTCGATCGTCCATATCTAGGA 59.482 47.826 15.94 13.17 40.90 2.94
828 4273 3.874543 CCTCGATCGTCCATATCTAGGAG 59.125 52.174 15.94 0.00 38.14 3.69
829 4274 4.509616 CTCGATCGTCCATATCTAGGAGT 58.490 47.826 15.94 0.00 35.42 3.85
830 4275 5.395435 CCTCGATCGTCCATATCTAGGAGTA 60.395 48.000 15.94 0.00 38.14 2.59
831 4276 5.662456 TCGATCGTCCATATCTAGGAGTAG 58.338 45.833 15.94 0.00 35.42 2.57
833 4278 5.875910 CGATCGTCCATATCTAGGAGTAGTT 59.124 44.000 7.03 0.00 35.42 2.24
834 4279 6.183360 CGATCGTCCATATCTAGGAGTAGTTG 60.183 46.154 7.03 0.00 35.42 3.16
835 4280 4.760715 TCGTCCATATCTAGGAGTAGTTGC 59.239 45.833 0.00 0.00 35.42 4.17
836 4281 4.519350 CGTCCATATCTAGGAGTAGTTGCA 59.481 45.833 0.00 0.00 35.42 4.08
837 4282 5.184096 CGTCCATATCTAGGAGTAGTTGCAT 59.816 44.000 0.00 0.00 35.42 3.96
851 4301 4.292186 AGTTGCATGTACATCAAGAGGT 57.708 40.909 5.07 0.00 0.00 3.85
858 4308 3.449918 TGTACATCAAGAGGTGATCCCA 58.550 45.455 0.00 0.00 44.01 4.37
860 4310 3.572632 ACATCAAGAGGTGATCCCATG 57.427 47.619 3.45 0.00 44.01 3.66
861 4311 3.117745 ACATCAAGAGGTGATCCCATGA 58.882 45.455 0.00 5.01 44.01 3.07
863 4313 3.634397 TCAAGAGGTGATCCCATGAAC 57.366 47.619 0.00 0.00 34.66 3.18
864 4314 3.184628 TCAAGAGGTGATCCCATGAACT 58.815 45.455 0.00 0.00 34.66 3.01
865 4315 3.198635 TCAAGAGGTGATCCCATGAACTC 59.801 47.826 0.00 0.00 34.66 3.01
866 4316 1.759445 AGAGGTGATCCCATGAACTCG 59.241 52.381 0.00 0.00 34.66 4.18
867 4317 1.757118 GAGGTGATCCCATGAACTCGA 59.243 52.381 0.00 0.00 34.66 4.04
868 4318 1.482593 AGGTGATCCCATGAACTCGAC 59.517 52.381 0.00 0.00 34.66 4.20
869 4319 1.207089 GGTGATCCCATGAACTCGACA 59.793 52.381 0.00 0.00 0.00 4.35
870 4320 2.158900 GGTGATCCCATGAACTCGACAT 60.159 50.000 0.00 0.00 0.00 3.06
872 4322 2.103094 TGATCCCATGAACTCGACATCC 59.897 50.000 0.00 0.00 0.00 3.51
873 4323 1.567357 TCCCATGAACTCGACATCCA 58.433 50.000 0.00 0.00 0.00 3.41
874 4324 2.118679 TCCCATGAACTCGACATCCAT 58.881 47.619 0.00 0.00 0.00 3.41
875 4325 2.103094 TCCCATGAACTCGACATCCATC 59.897 50.000 0.00 0.00 0.00 3.51
876 4326 2.487934 CCATGAACTCGACATCCATCC 58.512 52.381 0.00 0.00 0.00 3.51
877 4327 2.158914 CCATGAACTCGACATCCATCCA 60.159 50.000 0.00 0.00 0.00 3.41
878 4328 3.495629 CCATGAACTCGACATCCATCCAT 60.496 47.826 0.00 0.00 0.00 3.41
879 4329 3.459232 TGAACTCGACATCCATCCATC 57.541 47.619 0.00 0.00 0.00 3.51
880 4330 3.033909 TGAACTCGACATCCATCCATCT 58.966 45.455 0.00 0.00 0.00 2.90
881 4331 3.181472 TGAACTCGACATCCATCCATCTG 60.181 47.826 0.00 0.00 0.00 2.90
882 4332 2.392662 ACTCGACATCCATCCATCTGT 58.607 47.619 0.00 0.00 0.00 3.41
883 4333 3.566351 ACTCGACATCCATCCATCTGTA 58.434 45.455 0.00 0.00 0.00 2.74
884 4334 3.319405 ACTCGACATCCATCCATCTGTAC 59.681 47.826 0.00 0.00 0.00 2.90
885 4335 2.293399 TCGACATCCATCCATCTGTACG 59.707 50.000 0.00 0.00 0.00 3.67
886 4336 2.034685 CGACATCCATCCATCTGTACGT 59.965 50.000 0.00 0.00 0.00 3.57
887 4337 3.252458 CGACATCCATCCATCTGTACGTA 59.748 47.826 0.00 0.00 0.00 3.57
888 4338 4.613850 CGACATCCATCCATCTGTACGTAG 60.614 50.000 0.00 0.00 0.00 3.51
906 4361 1.274712 AGTCTCTCAGCCAAAGAGGG 58.725 55.000 7.52 0.00 40.58 4.30
970 4440 9.696917 AAGTAAGACAATGCTTTAAAAAGATGG 57.303 29.630 6.64 0.00 38.28 3.51
985 4455 3.695830 AGATGGAAGTTTCAACGCCTA 57.304 42.857 0.00 0.00 32.05 3.93
1003 4473 2.460918 CTAGGCTCCGTACAAATGTCG 58.539 52.381 0.00 0.00 0.00 4.35
1013 4483 3.673594 CGTACAAATGTCGAGCTCTCCTT 60.674 47.826 12.85 1.69 0.00 3.36
1115 4585 3.054503 CCGACGTCGTCCTGACCT 61.055 66.667 33.49 0.00 45.23 3.85
1123 4593 0.178973 TCGTCCTGACCTTGACCTCA 60.179 55.000 0.00 0.00 0.00 3.86
1153 4629 1.796796 GCGCGCATCCTTCTTCTTT 59.203 52.632 29.10 0.00 0.00 2.52
1155 4631 1.396996 GCGCGCATCCTTCTTCTTTTA 59.603 47.619 29.10 0.00 0.00 1.52
1156 4632 2.159572 GCGCGCATCCTTCTTCTTTTAA 60.160 45.455 29.10 0.00 0.00 1.52
1158 4634 4.274865 CGCGCATCCTTCTTCTTTTAATC 58.725 43.478 8.75 0.00 0.00 1.75
1160 4636 4.274865 CGCATCCTTCTTCTTTTAATCGC 58.725 43.478 0.00 0.00 0.00 4.58
1162 4638 5.234329 CGCATCCTTCTTCTTTTAATCGCTA 59.766 40.000 0.00 0.00 0.00 4.26
1163 4639 6.238103 CGCATCCTTCTTCTTTTAATCGCTAA 60.238 38.462 0.00 0.00 0.00 3.09
1164 4640 7.472543 GCATCCTTCTTCTTTTAATCGCTAAA 58.527 34.615 0.00 0.00 0.00 1.85
1485 4975 1.525077 CGACGAGGAGGAGGAGGAG 60.525 68.421 0.00 0.00 0.00 3.69
1488 4978 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1491 4981 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1493 4983 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1494 4984 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1500 4990 0.556380 AGGAGGAGGAGGAGGAGGAA 60.556 60.000 0.00 0.00 0.00 3.36
1502 4992 0.930726 GAGGAGGAGGAGGAGGAAGA 59.069 60.000 0.00 0.00 0.00 2.87
1503 4993 0.634465 AGGAGGAGGAGGAGGAAGAC 59.366 60.000 0.00 0.00 0.00 3.01
1504 4994 0.753848 GGAGGAGGAGGAGGAAGACG 60.754 65.000 0.00 0.00 0.00 4.18
1505 4995 0.256464 GAGGAGGAGGAGGAAGACGA 59.744 60.000 0.00 0.00 0.00 4.20
1506 4996 0.033894 AGGAGGAGGAGGAAGACGAC 60.034 60.000 0.00 0.00 0.00 4.34
1507 4997 1.378124 GGAGGAGGAGGAAGACGACG 61.378 65.000 0.00 0.00 0.00 5.12
1508 4998 0.392729 GAGGAGGAGGAAGACGACGA 60.393 60.000 0.00 0.00 0.00 4.20
1509 4999 0.393267 AGGAGGAGGAAGACGACGAG 60.393 60.000 0.00 0.00 0.00 4.18
1510 5000 1.378124 GGAGGAGGAAGACGACGAGG 61.378 65.000 0.00 0.00 0.00 4.63
1511 5001 1.995646 GAGGAGGAAGACGACGAGGC 61.996 65.000 0.00 0.00 0.00 4.70
1512 5002 2.100603 GAGGAAGACGACGAGGCG 59.899 66.667 0.00 0.00 37.29 5.52
1513 5003 3.398353 GAGGAAGACGACGAGGCGG 62.398 68.421 0.00 0.00 35.12 6.13
1968 5458 2.852180 CGTGATATGGGCCGACGGA 61.852 63.158 20.50 0.00 0.00 4.69
2070 5560 2.980233 GTGTGGTGCCAGCAGGAC 60.980 66.667 0.00 0.00 36.89 3.85
2194 5684 3.363844 GAGGAGCTGGAGGTGACGC 62.364 68.421 0.00 0.00 0.00 5.19
2441 5943 2.046507 CCAGTCCAGCCTCAGCAC 60.047 66.667 0.00 0.00 43.56 4.40
2538 6040 4.351054 CCGGCCAAGAAGCAGGGT 62.351 66.667 2.24 0.00 43.54 4.34
2637 6286 5.657826 TGAATTCAACCTCTCTCTCTCTG 57.342 43.478 5.45 0.00 0.00 3.35
2649 6298 1.665679 CTCTCTCTGTCTCTCTCGCAC 59.334 57.143 0.00 0.00 0.00 5.34
2650 6299 0.732571 CTCTCTGTCTCTCTCGCACC 59.267 60.000 0.00 0.00 0.00 5.01
2903 6569 6.503524 TCGGATTTCCTTTTTCACTTTTCAG 58.496 36.000 0.00 0.00 0.00 3.02
2946 6612 2.361757 TGACTGCATCCAACCAAGTTTG 59.638 45.455 0.00 0.00 0.00 2.93
2947 6613 2.622942 GACTGCATCCAACCAAGTTTGA 59.377 45.455 0.00 0.00 0.00 2.69
2948 6614 2.624838 ACTGCATCCAACCAAGTTTGAG 59.375 45.455 0.00 0.00 0.00 3.02
2949 6615 2.886523 CTGCATCCAACCAAGTTTGAGA 59.113 45.455 0.00 0.00 0.00 3.27
2986 6657 3.921119 TTGAATTCATGTGCCACTGAC 57.079 42.857 9.40 0.00 0.00 3.51
2990 6661 5.008980 TGAATTCATGTGCCACTGACATAA 58.991 37.500 3.38 0.00 32.64 1.90
3006 6677 8.192774 CACTGACATAATTTTCAACCATATGCT 58.807 33.333 0.00 0.00 0.00 3.79
3049 6720 6.203338 TGAAATGACCGTAAGTTTGTTACTCC 59.797 38.462 0.00 0.00 35.54 3.85
3052 6723 4.101430 TGACCGTAAGTTTGTTACTCCCTT 59.899 41.667 0.00 0.00 35.54 3.95
3053 6724 4.383173 ACCGTAAGTTTGTTACTCCCTTG 58.617 43.478 0.00 0.00 35.54 3.61
3054 6725 3.749609 CCGTAAGTTTGTTACTCCCTTGG 59.250 47.826 0.00 0.00 35.54 3.61
3055 6726 3.749609 CGTAAGTTTGTTACTCCCTTGGG 59.250 47.826 0.00 0.00 35.54 4.12
3056 6727 4.503643 CGTAAGTTTGTTACTCCCTTGGGA 60.504 45.833 8.28 8.28 35.54 4.37
3058 6729 2.148768 GTTTGTTACTCCCTTGGGACG 58.851 52.381 3.91 4.20 0.00 4.79
3059 6730 0.688487 TTGTTACTCCCTTGGGACGG 59.312 55.000 3.91 0.00 0.00 4.79
3066 6737 2.284699 CCTTGGGACGGAGGGAGT 60.285 66.667 0.00 0.00 31.71 3.85
3067 6738 1.001248 CCTTGGGACGGAGGGAGTA 59.999 63.158 0.00 0.00 31.71 2.59
3068 6739 1.328430 CCTTGGGACGGAGGGAGTAC 61.328 65.000 0.00 0.00 31.71 2.73
3131 6802 1.921748 ACTAGTACTCCCTCCGTTCCT 59.078 52.381 0.00 0.00 0.00 3.36
3134 6805 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3137 6808 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3142 6813 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3145 6816 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3146 6817 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3147 6818 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3148 6819 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3149 6820 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3150 6821 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3175 6947 9.350357 GAGATTTTAACAAGTGACTACATACGA 57.650 33.333 0.00 0.00 0.00 3.43
3188 6960 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
3195 6967 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
3210 6982 8.819643 AGTGAATCTACACTCTAAAGTTTGTC 57.180 34.615 0.00 0.00 46.36 3.18
3211 6983 8.643324 AGTGAATCTACACTCTAAAGTTTGTCT 58.357 33.333 0.00 0.00 46.36 3.41
3212 6984 9.909644 GTGAATCTACACTCTAAAGTTTGTCTA 57.090 33.333 0.00 0.00 37.73 2.59
3228 7000 9.692749 AAGTTTGTCTATATACATCCGTATGTG 57.307 33.333 3.56 0.00 45.99 3.21
3229 7001 8.304596 AGTTTGTCTATATACATCCGTATGTGG 58.695 37.037 3.56 0.00 45.99 4.17
3231 7003 8.866970 TTGTCTATATACATCCGTATGTGGTA 57.133 34.615 3.56 0.00 45.99 3.25
3232 7004 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
3233 7005 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
3234 7006 8.954350 GTCTATATACATCCGTATGTGGTAGTT 58.046 37.037 3.56 0.00 45.99 2.24
3235 7007 9.170734 TCTATATACATCCGTATGTGGTAGTTC 57.829 37.037 3.56 0.00 45.99 3.01
3236 7008 7.770366 ATATACATCCGTATGTGGTAGTTCA 57.230 36.000 3.56 0.00 45.99 3.18
3239 7011 5.741011 ACATCCGTATGTGGTAGTTCATTT 58.259 37.500 0.00 0.00 44.79 2.32
3288 7105 5.126707 AGGAACGGAGGTAGTACAACAATAG 59.873 44.000 2.06 0.00 0.00 1.73
3290 7107 5.990120 ACGGAGGTAGTACAACAATAGTT 57.010 39.130 2.06 0.00 38.88 2.24
3421 7327 8.463607 GGATTAACGATAAGAAAATGGAAACCA 58.536 33.333 0.00 0.00 38.19 3.67
3566 7474 1.543208 GGTTGCATGTGAGGTGACTGA 60.543 52.381 0.00 0.00 44.43 3.41
3647 7589 0.982852 TGGTCCTACTGATGGCCCAG 60.983 60.000 0.00 3.41 39.93 4.45
3834 7844 5.540337 TGGTCAGAGTTACATCTTGAAGACT 59.460 40.000 0.00 0.00 0.00 3.24
3862 7872 3.604875 ATGCCCAAAAGATCAGCTTTG 57.395 42.857 0.00 1.92 45.85 2.77
3863 7873 2.596346 TGCCCAAAAGATCAGCTTTGA 58.404 42.857 13.53 0.00 45.85 2.69
3870 7880 6.207417 CCCAAAAGATCAGCTTTGAAAGACTA 59.793 38.462 9.48 0.00 45.85 2.59
3881 7891 1.628846 TGAAAGACTAAGGGGGTGCTC 59.371 52.381 0.00 0.00 0.00 4.26
3981 7991 1.071605 GCAAGCTCTTTGACGTCGAT 58.928 50.000 11.62 0.00 39.21 3.59
4056 8066 0.396811 CACCCGGAAAGAGTGGAAGT 59.603 55.000 0.73 0.00 0.00 3.01
4059 8069 2.092049 ACCCGGAAAGAGTGGAAGTTTT 60.092 45.455 0.73 0.00 0.00 2.43
4183 8193 8.730680 TCAGTTAGCTAGCTTTCAAAATTAAGG 58.269 33.333 24.88 3.30 0.00 2.69
4225 8235 9.108284 CATTTTAAGACCTGATTTTGTGGTTTT 57.892 29.630 0.00 0.00 33.74 2.43
4365 8377 6.068010 TGGAGCTATTCAGAAAAAGGTTTGA 58.932 36.000 0.00 0.00 0.00 2.69
4378 8390 9.366216 AGAAAAAGGTTTGAATACACTGAAAAC 57.634 29.630 0.00 0.00 0.00 2.43
4464 8476 2.346803 TGCTACTTCATTCAGGTTCGC 58.653 47.619 0.00 0.00 0.00 4.70
4557 8569 1.872952 CAAGGTCGCATGACTGACAAA 59.127 47.619 13.07 0.00 44.83 2.83
4659 8671 3.073798 TCCAGGAGTTTTGCAGGTGAATA 59.926 43.478 0.00 0.00 0.00 1.75
4717 8729 3.560068 GTGTCATCCGGTTATGATGGAAC 59.440 47.826 8.91 3.31 40.02 3.62
4767 8779 8.620116 AAATATTAACAAAATGCAAGGCAAGT 57.380 26.923 0.00 0.00 43.62 3.16
4905 8917 2.158127 AGAGCAGGAGAGGATCATGGAT 60.158 50.000 0.00 0.00 40.12 3.41
4998 9010 8.079203 TGTTTCTTATGATTGCACGTTTAACAT 58.921 29.630 0.00 0.00 0.00 2.71
5008 9020 3.749609 GCACGTTTAACATTACTCTGGGT 59.250 43.478 0.00 0.00 0.00 4.51
5151 9163 3.331150 CAATGTACCTGTTCGCTACCAA 58.669 45.455 0.00 0.00 0.00 3.67
5152 9164 3.688694 ATGTACCTGTTCGCTACCAAA 57.311 42.857 0.00 0.00 0.00 3.28
5154 9166 4.804868 TGTACCTGTTCGCTACCAAATA 57.195 40.909 0.00 0.00 0.00 1.40
5155 9167 5.347620 TGTACCTGTTCGCTACCAAATAT 57.652 39.130 0.00 0.00 0.00 1.28
5156 9168 6.468333 TGTACCTGTTCGCTACCAAATATA 57.532 37.500 0.00 0.00 0.00 0.86
5157 9169 7.058023 TGTACCTGTTCGCTACCAAATATAT 57.942 36.000 0.00 0.00 0.00 0.86
5265 9278 5.550290 TCAATGTGATGCACTTCTTCAGTA 58.450 37.500 0.00 0.00 35.11 2.74
5271 9284 4.991056 TGATGCACTTCTTCAGTAGAACAC 59.009 41.667 0.00 0.00 37.96 3.32
5274 9287 2.731976 CACTTCTTCAGTAGAACACGGC 59.268 50.000 0.00 0.00 37.96 5.68
5295 9308 2.363306 TCACCCTGTTGCTGAACAAT 57.637 45.000 0.00 0.00 41.62 2.71
5309 9322 6.788021 TTGCTGAACAATTAAGCAGTGCTTAG 60.788 38.462 30.67 23.46 46.82 2.18
5697 9716 2.045926 CTTCTTGGCACCTCCCCG 60.046 66.667 0.00 0.00 0.00 5.73
5719 9739 1.831580 GAAGCTGGCTGAAGGAACAT 58.168 50.000 0.00 0.00 0.00 2.71
5740 9760 6.151691 ACATGATTGTTGGATTGTTCTTTCG 58.848 36.000 0.00 0.00 29.55 3.46
5751 9771 1.890489 TGTTCTTTCGGTCGGAGATCA 59.110 47.619 0.00 0.00 37.64 2.92
5762 9782 0.460109 CGGAGATCAATGGCACGACA 60.460 55.000 0.00 0.00 0.00 4.35
5794 9814 3.711704 TCTCTGGGGATTGTTCATAGACC 59.288 47.826 0.00 0.00 0.00 3.85
5985 10009 8.087750 GTCCATGTTGATCCTTAATTTGTCAAA 58.912 33.333 0.00 0.00 31.38 2.69
5986 10010 8.814931 TCCATGTTGATCCTTAATTTGTCAAAT 58.185 29.630 4.91 4.91 31.38 2.32
5987 10011 9.439500 CCATGTTGATCCTTAATTTGTCAAATT 57.561 29.630 23.40 23.40 43.19 1.82
6070 10094 4.081198 AGAGCTACAGAATCCAGTTCAAGG 60.081 45.833 0.00 0.00 39.39 3.61
6165 10190 2.150719 TCGAGGCCCCTGAAACCAA 61.151 57.895 0.00 0.00 0.00 3.67
6166 10191 1.000896 CGAGGCCCCTGAAACCAAT 60.001 57.895 0.00 0.00 0.00 3.16
6214 10239 0.951558 GGCAGAAAAGAGCCGACAAA 59.048 50.000 0.00 0.00 41.70 2.83
6250 10276 7.985184 AGTCATTACAGGCACGAAATATAGAAA 59.015 33.333 0.00 0.00 0.00 2.52
6253 10279 3.308866 ACAGGCACGAAATATAGAAACGC 59.691 43.478 0.00 0.00 0.00 4.84
6254 10280 3.555956 CAGGCACGAAATATAGAAACGCT 59.444 43.478 0.00 0.00 0.00 5.07
6255 10281 3.555956 AGGCACGAAATATAGAAACGCTG 59.444 43.478 0.00 0.00 0.00 5.18
6299 10325 6.546403 ACATAAGGCTAGATAGAAGACGACAA 59.454 38.462 0.00 0.00 0.00 3.18
6341 10368 0.464036 AGGACACGAAGAAGCACACA 59.536 50.000 0.00 0.00 0.00 3.72
6420 10447 3.052954 TGCTACCCGTTCGAGCAA 58.947 55.556 0.00 0.00 43.03 3.91
6421 10448 1.373748 TGCTACCCGTTCGAGCAAC 60.374 57.895 0.00 0.00 43.03 4.17
6504 10531 3.524541 TGATCCAGTGTGTCATCATTCG 58.475 45.455 0.00 0.00 0.00 3.34
6505 10532 3.055891 TGATCCAGTGTGTCATCATTCGT 60.056 43.478 0.00 0.00 0.00 3.85
6511 10538 5.343249 CAGTGTGTCATCATTCGTATCAGA 58.657 41.667 0.00 0.00 0.00 3.27
6523 10553 3.977427 TCGTATCAGAACAATGGGATCG 58.023 45.455 0.00 0.00 0.00 3.69
6584 10614 0.385473 CCAAATCGACCACAACACGC 60.385 55.000 0.00 0.00 0.00 5.34
6714 10744 7.816995 GGCACATTTTATTAAGTTCCACATCAA 59.183 33.333 0.00 0.00 0.00 2.57
6742 10772 0.883833 CCCCACATGTGAAGAACAGC 59.116 55.000 27.46 0.00 43.64 4.40
6757 10787 8.178313 GTGAAGAACAGCTGATTAATAGTTTCC 58.822 37.037 23.35 0.00 0.00 3.13
6768 10798 1.033574 ATAGTTTCCTCTCTCCCGCG 58.966 55.000 0.00 0.00 0.00 6.46
6887 10919 7.489574 TTTTGCAGGTATTTTGATTTTCCAC 57.510 32.000 0.00 0.00 0.00 4.02
6923 10955 6.203723 GTGGATAGTTGCATTCCTCAGTAATC 59.796 42.308 0.00 0.00 0.00 1.75
6924 10956 6.126796 TGGATAGTTGCATTCCTCAGTAATCA 60.127 38.462 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.181492 GGGGGCAAATTGTTTGTTTTGTG 60.181 43.478 4.56 0.00 42.56 3.33
2 3 3.286353 AGGGGGCAAATTGTTTGTTTTG 58.714 40.909 4.56 0.00 42.56 2.44
3 4 3.660970 AGGGGGCAAATTGTTTGTTTT 57.339 38.095 4.56 0.00 42.56 2.43
4 5 3.201930 AGAAGGGGGCAAATTGTTTGTTT 59.798 39.130 4.56 0.00 42.56 2.83
5 6 2.777114 AGAAGGGGGCAAATTGTTTGTT 59.223 40.909 4.56 0.00 42.56 2.83
6 7 2.368548 GAGAAGGGGGCAAATTGTTTGT 59.631 45.455 4.56 0.00 42.56 2.83
7 8 2.634453 AGAGAAGGGGGCAAATTGTTTG 59.366 45.455 0.00 0.00 43.44 2.93
8 9 2.899900 GAGAGAAGGGGGCAAATTGTTT 59.100 45.455 0.00 0.00 0.00 2.83
9 10 2.529632 GAGAGAAGGGGGCAAATTGTT 58.470 47.619 0.00 0.00 0.00 2.83
10 11 1.272704 GGAGAGAAGGGGGCAAATTGT 60.273 52.381 0.00 0.00 0.00 2.71
11 12 1.272648 TGGAGAGAAGGGGGCAAATTG 60.273 52.381 0.00 0.00 0.00 2.32
12 13 1.084018 TGGAGAGAAGGGGGCAAATT 58.916 50.000 0.00 0.00 0.00 1.82
13 14 0.332972 GTGGAGAGAAGGGGGCAAAT 59.667 55.000 0.00 0.00 0.00 2.32
25 26 5.409826 GGACAATTCAGTTACAAGTGGAGAG 59.590 44.000 0.00 0.00 0.00 3.20
39 40 6.382869 AAGTCTCACTTTTGGACAATTCAG 57.617 37.500 0.00 0.00 34.11 3.02
40 41 6.773976 AAAGTCTCACTTTTGGACAATTCA 57.226 33.333 0.00 0.00 45.38 2.57
72 73 3.091545 CACATTGCTCCTGGTGGTTAAT 58.908 45.455 0.00 0.00 34.23 1.40
104 108 4.112634 AGGAGAACCATGCCAAACTAAA 57.887 40.909 0.00 0.00 38.94 1.85
106 110 3.806949 AAGGAGAACCATGCCAAACTA 57.193 42.857 0.00 0.00 38.94 2.24
204 210 4.408821 GATGGTGGCCGCTGGTCA 62.409 66.667 17.49 5.78 33.55 4.02
222 228 3.055458 TGTCCTGTGATTTCTTATCGCCA 60.055 43.478 0.00 0.00 0.00 5.69
224 230 3.000322 CGTGTCCTGTGATTTCTTATCGC 60.000 47.826 0.00 0.00 0.00 4.58
229 235 3.194005 ACACGTGTCCTGTGATTTCTT 57.806 42.857 17.22 0.00 39.73 2.52
238 244 4.233123 TGTTAGAGTAACACGTGTCCTG 57.767 45.455 23.61 0.00 43.23 3.86
251 257 5.748402 TGGCATTTCAGATCATGTTAGAGT 58.252 37.500 0.00 0.00 0.00 3.24
265 271 2.502130 TCCCACGTAGTATGGCATTTCA 59.498 45.455 4.78 0.00 41.61 2.69
269 275 2.394632 TCTTCCCACGTAGTATGGCAT 58.605 47.619 4.88 4.88 41.61 4.40
270 276 1.855295 TCTTCCCACGTAGTATGGCA 58.145 50.000 0.00 0.00 41.61 4.92
271 277 2.973694 TTCTTCCCACGTAGTATGGC 57.026 50.000 0.00 0.00 41.61 4.40
272 278 6.994221 AGATATTTCTTCCCACGTAGTATGG 58.006 40.000 0.00 0.00 41.61 2.74
292 298 9.449719 GGAGTATTCTTGGTTTTGAAGAAGATA 57.550 33.333 0.00 0.00 41.53 1.98
294 300 7.287061 TGGAGTATTCTTGGTTTTGAAGAAGA 58.713 34.615 0.00 0.00 41.53 2.87
295 301 7.510549 TGGAGTATTCTTGGTTTTGAAGAAG 57.489 36.000 0.00 0.00 41.53 2.85
296 302 7.777910 TCTTGGAGTATTCTTGGTTTTGAAGAA 59.222 33.333 0.00 0.00 42.23 2.52
298 304 7.510549 TCTTGGAGTATTCTTGGTTTTGAAG 57.489 36.000 0.00 0.00 0.00 3.02
300 306 7.889873 TTTCTTGGAGTATTCTTGGTTTTGA 57.110 32.000 0.00 0.00 0.00 2.69
301 307 7.978975 TGTTTTCTTGGAGTATTCTTGGTTTTG 59.021 33.333 0.00 0.00 0.00 2.44
302 308 8.073467 TGTTTTCTTGGAGTATTCTTGGTTTT 57.927 30.769 0.00 0.00 0.00 2.43
303 309 7.654022 TGTTTTCTTGGAGTATTCTTGGTTT 57.346 32.000 0.00 0.00 0.00 3.27
304 310 7.839680 ATGTTTTCTTGGAGTATTCTTGGTT 57.160 32.000 0.00 0.00 0.00 3.67
305 311 9.533831 AATATGTTTTCTTGGAGTATTCTTGGT 57.466 29.630 0.00 0.00 0.00 3.67
314 320 8.883731 CGAGATACAAATATGTTTTCTTGGAGT 58.116 33.333 0.00 0.00 41.05 3.85
317 323 7.641411 CAGCGAGATACAAATATGTTTTCTTGG 59.359 37.037 0.00 0.00 41.05 3.61
321 330 6.486248 TGCAGCGAGATACAAATATGTTTTC 58.514 36.000 0.00 0.00 41.05 2.29
359 369 4.860022 AGGTTGGGATCCTAATTGAGTTG 58.140 43.478 14.30 0.00 33.04 3.16
361 371 5.911178 TCATAGGTTGGGATCCTAATTGAGT 59.089 40.000 14.30 0.39 40.36 3.41
362 372 6.439636 TCATAGGTTGGGATCCTAATTGAG 57.560 41.667 14.30 4.20 40.36 3.02
363 373 6.159575 TGTTCATAGGTTGGGATCCTAATTGA 59.840 38.462 14.30 11.59 40.36 2.57
365 375 6.590656 TGTTCATAGGTTGGGATCCTAATT 57.409 37.500 14.30 8.26 40.36 1.40
366 376 6.590656 TTGTTCATAGGTTGGGATCCTAAT 57.409 37.500 14.30 1.33 40.36 1.73
367 377 6.590656 ATTGTTCATAGGTTGGGATCCTAA 57.409 37.500 12.58 9.49 40.36 2.69
373 388 5.772393 AGTGTATTGTTCATAGGTTGGGA 57.228 39.130 0.00 0.00 0.00 4.37
389 404 6.747414 TCAATGGAGGTAATGCTAGTGTAT 57.253 37.500 0.00 0.00 0.00 2.29
399 414 7.007723 TGTGGTTTTAGTTCAATGGAGGTAAT 58.992 34.615 0.00 0.00 0.00 1.89
400 415 6.366340 TGTGGTTTTAGTTCAATGGAGGTAA 58.634 36.000 0.00 0.00 0.00 2.85
401 416 5.942961 TGTGGTTTTAGTTCAATGGAGGTA 58.057 37.500 0.00 0.00 0.00 3.08
402 417 4.798882 TGTGGTTTTAGTTCAATGGAGGT 58.201 39.130 0.00 0.00 0.00 3.85
403 418 5.476599 TGATGTGGTTTTAGTTCAATGGAGG 59.523 40.000 0.00 0.00 0.00 4.30
404 419 6.573664 TGATGTGGTTTTAGTTCAATGGAG 57.426 37.500 0.00 0.00 0.00 3.86
405 420 6.549364 ACTTGATGTGGTTTTAGTTCAATGGA 59.451 34.615 0.00 0.00 0.00 3.41
406 421 6.748132 ACTTGATGTGGTTTTAGTTCAATGG 58.252 36.000 0.00 0.00 0.00 3.16
407 422 9.912634 AATACTTGATGTGGTTTTAGTTCAATG 57.087 29.630 0.00 0.00 0.00 2.82
409 424 9.959749 GAAATACTTGATGTGGTTTTAGTTCAA 57.040 29.630 0.00 0.00 0.00 2.69
410 425 9.349713 AGAAATACTTGATGTGGTTTTAGTTCA 57.650 29.630 0.00 0.00 0.00 3.18
411 426 9.612620 CAGAAATACTTGATGTGGTTTTAGTTC 57.387 33.333 0.00 0.00 0.00 3.01
412 427 9.349713 TCAGAAATACTTGATGTGGTTTTAGTT 57.650 29.630 0.00 0.00 0.00 2.24
413 428 8.918202 TCAGAAATACTTGATGTGGTTTTAGT 57.082 30.769 0.00 0.00 0.00 2.24
414 429 9.612620 GTTCAGAAATACTTGATGTGGTTTTAG 57.387 33.333 0.00 0.00 0.00 1.85
415 430 9.126151 TGTTCAGAAATACTTGATGTGGTTTTA 57.874 29.630 0.00 0.00 0.00 1.52
416 431 8.006298 TGTTCAGAAATACTTGATGTGGTTTT 57.994 30.769 0.00 0.00 0.00 2.43
417 432 7.581213 TGTTCAGAAATACTTGATGTGGTTT 57.419 32.000 0.00 0.00 0.00 3.27
418 433 7.765695 ATGTTCAGAAATACTTGATGTGGTT 57.234 32.000 0.00 0.00 0.00 3.67
419 434 7.554118 CCTATGTTCAGAAATACTTGATGTGGT 59.446 37.037 0.00 0.00 0.00 4.16
420 435 7.012704 CCCTATGTTCAGAAATACTTGATGTGG 59.987 40.741 0.00 0.00 0.00 4.17
421 436 7.770433 TCCCTATGTTCAGAAATACTTGATGTG 59.230 37.037 0.00 0.00 0.00 3.21
422 437 7.861629 TCCCTATGTTCAGAAATACTTGATGT 58.138 34.615 0.00 0.00 0.00 3.06
423 438 7.989741 ACTCCCTATGTTCAGAAATACTTGATG 59.010 37.037 0.00 0.00 0.00 3.07
424 439 8.095452 ACTCCCTATGTTCAGAAATACTTGAT 57.905 34.615 0.00 0.00 0.00 2.57
425 440 7.496346 ACTCCCTATGTTCAGAAATACTTGA 57.504 36.000 0.00 0.00 0.00 3.02
426 441 9.838339 ATTACTCCCTATGTTCAGAAATACTTG 57.162 33.333 0.00 0.00 0.00 3.16
431 446 8.993424 AGTGTATTACTCCCTATGTTCAGAAAT 58.007 33.333 0.00 0.00 33.17 2.17
432 447 8.375493 AGTGTATTACTCCCTATGTTCAGAAA 57.625 34.615 0.00 0.00 33.17 2.52
433 448 7.973048 AGTGTATTACTCCCTATGTTCAGAA 57.027 36.000 0.00 0.00 33.17 3.02
434 449 7.230913 GCTAGTGTATTACTCCCTATGTTCAGA 59.769 40.741 0.00 0.00 40.89 3.27
435 450 7.371936 GCTAGTGTATTACTCCCTATGTTCAG 58.628 42.308 0.00 0.00 40.89 3.02
436 451 6.016527 CGCTAGTGTATTACTCCCTATGTTCA 60.017 42.308 0.00 0.00 40.89 3.18
437 452 6.206243 TCGCTAGTGTATTACTCCCTATGTTC 59.794 42.308 2.66 0.00 40.89 3.18
438 453 6.066690 TCGCTAGTGTATTACTCCCTATGTT 58.933 40.000 2.66 0.00 40.89 2.71
439 454 5.628130 TCGCTAGTGTATTACTCCCTATGT 58.372 41.667 2.66 0.00 40.89 2.29
440 455 6.570672 TTCGCTAGTGTATTACTCCCTATG 57.429 41.667 2.66 0.00 40.89 2.23
441 456 6.350277 GCATTCGCTAGTGTATTACTCCCTAT 60.350 42.308 2.66 0.00 40.89 2.57
442 457 5.048224 GCATTCGCTAGTGTATTACTCCCTA 60.048 44.000 2.66 0.00 40.89 3.53
443 458 4.262079 GCATTCGCTAGTGTATTACTCCCT 60.262 45.833 2.66 0.00 40.89 4.20
444 459 3.988517 GCATTCGCTAGTGTATTACTCCC 59.011 47.826 2.66 0.00 40.89 4.30
445 460 3.988517 GGCATTCGCTAGTGTATTACTCC 59.011 47.826 2.66 0.00 36.38 3.85
446 461 3.988517 GGGCATTCGCTAGTGTATTACTC 59.011 47.826 2.66 0.00 36.38 2.59
447 462 3.552273 CGGGCATTCGCTAGTGTATTACT 60.552 47.826 2.66 0.00 37.94 2.24
448 463 2.729882 CGGGCATTCGCTAGTGTATTAC 59.270 50.000 2.66 0.00 38.60 1.89
449 464 2.288579 CCGGGCATTCGCTAGTGTATTA 60.289 50.000 2.66 0.00 38.60 0.98
450 465 1.540363 CCGGGCATTCGCTAGTGTATT 60.540 52.381 2.66 0.00 38.60 1.89
451 466 0.033504 CCGGGCATTCGCTAGTGTAT 59.966 55.000 2.66 0.00 38.60 2.29
452 467 1.440060 CCGGGCATTCGCTAGTGTA 59.560 57.895 2.66 0.00 38.60 2.90
453 468 2.186903 CCGGGCATTCGCTAGTGT 59.813 61.111 2.66 0.00 38.60 3.55
454 469 3.272334 GCCGGGCATTCGCTAGTG 61.272 66.667 15.62 0.00 38.60 2.74
455 470 4.547367 GGCCGGGCATTCGCTAGT 62.547 66.667 25.33 0.00 38.60 2.57
456 471 4.241555 AGGCCGGGCATTCGCTAG 62.242 66.667 31.59 0.00 38.60 3.42
457 472 4.235762 GAGGCCGGGCATTCGCTA 62.236 66.667 31.59 0.00 38.60 4.26
461 476 4.162690 ACGAGAGGCCGGGCATTC 62.163 66.667 31.59 23.88 0.00 2.67
492 507 9.931210 CGGATTGGAAGAAACAAATAGTTATAC 57.069 33.333 0.00 0.00 40.26 1.47
493 508 8.617809 GCGGATTGGAAGAAACAAATAGTTATA 58.382 33.333 0.00 0.00 40.26 0.98
494 509 7.416326 GGCGGATTGGAAGAAACAAATAGTTAT 60.416 37.037 0.00 0.00 40.26 1.89
499 518 4.082845 TGGCGGATTGGAAGAAACAAATA 58.917 39.130 0.00 0.00 0.00 1.40
507 526 4.240881 GCATGGCGGATTGGAAGA 57.759 55.556 0.00 0.00 0.00 2.87
523 542 1.089920 ACATTGTCCATGCTCTTCGC 58.910 50.000 0.00 0.00 36.14 4.70
524 543 4.631377 TCTTAACATTGTCCATGCTCTTCG 59.369 41.667 0.00 0.00 36.14 3.79
525 544 6.317140 TGATCTTAACATTGTCCATGCTCTTC 59.683 38.462 0.00 0.00 36.14 2.87
526 545 6.094603 GTGATCTTAACATTGTCCATGCTCTT 59.905 38.462 0.00 0.00 36.14 2.85
527 546 5.587844 GTGATCTTAACATTGTCCATGCTCT 59.412 40.000 0.00 0.00 36.14 4.09
528 547 5.587844 AGTGATCTTAACATTGTCCATGCTC 59.412 40.000 0.00 0.00 36.14 4.26
529 548 5.503927 AGTGATCTTAACATTGTCCATGCT 58.496 37.500 0.00 0.00 36.14 3.79
530 549 5.824904 AGTGATCTTAACATTGTCCATGC 57.175 39.130 0.00 0.00 36.14 4.06
531 550 8.048534 AGAAAGTGATCTTAACATTGTCCATG 57.951 34.615 0.00 0.00 34.63 3.66
532 551 8.641498 AAGAAAGTGATCTTAACATTGTCCAT 57.359 30.769 0.00 0.00 37.88 3.41
533 552 9.567776 TTAAGAAAGTGATCTTAACATTGTCCA 57.432 29.630 5.62 0.00 43.47 4.02
542 561 8.842358 ACGGATTGTTAAGAAAGTGATCTTAA 57.158 30.769 5.62 5.62 45.15 1.85
543 562 8.092068 TGACGGATTGTTAAGAAAGTGATCTTA 58.908 33.333 0.00 0.00 40.13 2.10
544 563 6.934645 TGACGGATTGTTAAGAAAGTGATCTT 59.065 34.615 0.00 0.00 42.21 2.40
545 564 6.464222 TGACGGATTGTTAAGAAAGTGATCT 58.536 36.000 0.00 0.00 0.00 2.75
546 565 6.721571 TGACGGATTGTTAAGAAAGTGATC 57.278 37.500 0.00 0.00 0.00 2.92
547 566 6.036083 CGATGACGGATTGTTAAGAAAGTGAT 59.964 38.462 0.00 0.00 35.72 3.06
548 567 5.347635 CGATGACGGATTGTTAAGAAAGTGA 59.652 40.000 0.00 0.00 35.72 3.41
549 568 5.347635 TCGATGACGGATTGTTAAGAAAGTG 59.652 40.000 0.00 0.00 40.21 3.16
550 569 5.475719 TCGATGACGGATTGTTAAGAAAGT 58.524 37.500 0.00 0.00 40.21 2.66
551 570 6.414079 CATCGATGACGGATTGTTAAGAAAG 58.586 40.000 21.02 0.00 40.21 2.62
552 571 5.220586 GCATCGATGACGGATTGTTAAGAAA 60.221 40.000 29.20 0.00 40.21 2.52
553 572 4.270084 GCATCGATGACGGATTGTTAAGAA 59.730 41.667 29.20 0.00 40.21 2.52
554 573 3.802139 GCATCGATGACGGATTGTTAAGA 59.198 43.478 29.20 0.00 40.21 2.10
555 574 3.804325 AGCATCGATGACGGATTGTTAAG 59.196 43.478 29.20 0.00 40.21 1.85
556 575 3.792401 AGCATCGATGACGGATTGTTAA 58.208 40.909 29.20 0.00 40.21 2.01
557 576 3.452755 AGCATCGATGACGGATTGTTA 57.547 42.857 29.20 0.00 40.21 2.41
558 577 2.315925 AGCATCGATGACGGATTGTT 57.684 45.000 29.20 0.00 40.21 2.83
559 578 3.667497 ATAGCATCGATGACGGATTGT 57.333 42.857 29.20 6.02 40.21 2.71
560 579 4.738124 ACTATAGCATCGATGACGGATTG 58.262 43.478 29.20 18.14 40.21 2.67
561 580 6.701145 ATACTATAGCATCGATGACGGATT 57.299 37.500 29.20 10.42 40.21 3.01
562 581 7.499563 AGTTATACTATAGCATCGATGACGGAT 59.500 37.037 29.20 18.13 40.21 4.18
563 582 6.822170 AGTTATACTATAGCATCGATGACGGA 59.178 38.462 29.20 13.18 40.21 4.69
564 583 7.017498 AGTTATACTATAGCATCGATGACGG 57.983 40.000 29.20 14.46 40.21 4.79
581 600 9.931210 CGGATTGGAAGAAACAAATAGTTATAC 57.069 33.333 0.00 0.00 40.26 1.47
582 601 8.617809 GCGGATTGGAAGAAACAAATAGTTATA 58.382 33.333 0.00 0.00 40.26 0.98
583 602 7.416326 GGCGGATTGGAAGAAACAAATAGTTAT 60.416 37.037 0.00 0.00 40.26 1.89
584 603 6.127842 GGCGGATTGGAAGAAACAAATAGTTA 60.128 38.462 0.00 0.00 40.26 2.24
585 604 5.336451 GGCGGATTGGAAGAAACAAATAGTT 60.336 40.000 0.00 0.00 43.89 2.24
586 605 4.157840 GGCGGATTGGAAGAAACAAATAGT 59.842 41.667 0.00 0.00 0.00 2.12
587 606 4.157656 TGGCGGATTGGAAGAAACAAATAG 59.842 41.667 0.00 0.00 0.00 1.73
588 607 4.082845 TGGCGGATTGGAAGAAACAAATA 58.917 39.130 0.00 0.00 0.00 1.40
589 608 2.896685 TGGCGGATTGGAAGAAACAAAT 59.103 40.909 0.00 0.00 0.00 2.32
590 609 2.311463 TGGCGGATTGGAAGAAACAAA 58.689 42.857 0.00 0.00 0.00 2.83
591 610 1.988293 TGGCGGATTGGAAGAAACAA 58.012 45.000 0.00 0.00 0.00 2.83
592 611 1.818060 CATGGCGGATTGGAAGAAACA 59.182 47.619 0.00 0.00 0.00 2.83
593 612 1.469767 GCATGGCGGATTGGAAGAAAC 60.470 52.381 0.00 0.00 0.00 2.78
594 613 0.817013 GCATGGCGGATTGGAAGAAA 59.183 50.000 0.00 0.00 0.00 2.52
595 614 2.492418 GCATGGCGGATTGGAAGAA 58.508 52.632 0.00 0.00 0.00 2.52
596 615 4.240881 GCATGGCGGATTGGAAGA 57.759 55.556 0.00 0.00 0.00 2.87
624 643 7.536622 GCAGAAGAAAGTGATCTTAACATTGTG 59.463 37.037 0.00 0.00 39.70 3.33
629 648 7.750229 AATGCAGAAGAAAGTGATCTTAACA 57.250 32.000 0.00 0.00 39.70 2.41
644 663 8.982723 AGTATATATGTACCCCTAATGCAGAAG 58.017 37.037 6.05 0.00 0.00 2.85
668 3386 8.816894 TGACAACTATTTTCAGATAGAGGAAGT 58.183 33.333 0.00 0.00 34.44 3.01
669 3387 9.829507 ATGACAACTATTTTCAGATAGAGGAAG 57.170 33.333 0.00 0.00 34.44 3.46
670 3388 9.823647 GATGACAACTATTTTCAGATAGAGGAA 57.176 33.333 0.00 0.00 34.44 3.36
671 3389 8.981659 TGATGACAACTATTTTCAGATAGAGGA 58.018 33.333 0.00 0.00 34.44 3.71
672 3390 9.605275 TTGATGACAACTATTTTCAGATAGAGG 57.395 33.333 0.00 0.00 34.44 3.69
677 3395 9.865321 CCATTTTGATGACAACTATTTTCAGAT 57.135 29.630 0.00 0.00 35.63 2.90
678 3396 9.076781 TCCATTTTGATGACAACTATTTTCAGA 57.923 29.630 0.00 0.00 35.63 3.27
679 3397 9.865321 ATCCATTTTGATGACAACTATTTTCAG 57.135 29.630 0.00 0.00 35.63 3.02
719 3437 9.117183 TGCATCTAGACGTATTTTAGTTCTAGA 57.883 33.333 8.64 8.64 38.94 2.43
722 3440 7.868415 GGATGCATCTAGACGTATTTTAGTTCT 59.132 37.037 25.28 0.00 0.00 3.01
723 3441 7.116519 GGGATGCATCTAGACGTATTTTAGTTC 59.883 40.741 25.28 2.81 0.00 3.01
726 3444 6.692486 AGGGATGCATCTAGACGTATTTTAG 58.308 40.000 25.28 0.00 0.00 1.85
727 3445 6.665992 AGGGATGCATCTAGACGTATTTTA 57.334 37.500 25.28 0.00 0.00 1.52
728 3446 5.552870 AGGGATGCATCTAGACGTATTTT 57.447 39.130 25.28 0.00 0.00 1.82
730 3448 5.552870 AAAGGGATGCATCTAGACGTATT 57.447 39.130 25.28 7.67 0.00 1.89
733 3451 3.914426 AAAAGGGATGCATCTAGACGT 57.086 42.857 25.28 8.21 0.00 4.34
734 3452 4.932200 GGATAAAAGGGATGCATCTAGACG 59.068 45.833 25.28 0.00 0.00 4.18
735 3453 5.869579 TGGATAAAAGGGATGCATCTAGAC 58.130 41.667 25.28 13.49 0.00 2.59
737 3455 7.771927 AAATGGATAAAAGGGATGCATCTAG 57.228 36.000 25.28 0.00 34.62 2.43
738 3456 9.653516 TTAAAATGGATAAAAGGGATGCATCTA 57.346 29.630 25.28 10.55 34.62 1.98
739 3457 8.551682 TTAAAATGGATAAAAGGGATGCATCT 57.448 30.769 25.28 8.57 34.62 2.90
740 3458 9.211485 CATTAAAATGGATAAAAGGGATGCATC 57.789 33.333 18.81 18.81 34.62 3.91
743 3461 8.203485 TGTCATTAAAATGGATAAAAGGGATGC 58.797 33.333 3.00 0.00 37.03 3.91
746 3464 9.320295 ACTTGTCATTAAAATGGATAAAAGGGA 57.680 29.630 3.00 0.00 37.03 4.20
754 4199 9.184523 TCGGAAATACTTGTCATTAAAATGGAT 57.815 29.630 3.00 0.00 37.03 3.41
765 4210 3.991773 CCTTCGTTCGGAAATACTTGTCA 59.008 43.478 0.00 0.00 33.34 3.58
766 4211 3.370061 CCCTTCGTTCGGAAATACTTGTC 59.630 47.826 0.00 0.00 33.34 3.18
767 4212 3.244318 ACCCTTCGTTCGGAAATACTTGT 60.244 43.478 0.00 0.00 33.34 3.16
768 4213 3.332034 ACCCTTCGTTCGGAAATACTTG 58.668 45.455 0.00 0.00 33.34 3.16
769 4214 3.690475 ACCCTTCGTTCGGAAATACTT 57.310 42.857 0.00 0.00 33.34 2.24
771 4216 3.848726 TGTACCCTTCGTTCGGAAATAC 58.151 45.455 0.00 0.00 33.34 1.89
772 4217 4.741321 ATGTACCCTTCGTTCGGAAATA 57.259 40.909 0.00 0.00 33.34 1.40
774 4219 4.741321 ATATGTACCCTTCGTTCGGAAA 57.259 40.909 0.00 0.00 33.34 3.13
776 4221 6.095860 CCATATATATGTACCCTTCGTTCGGA 59.904 42.308 19.11 0.00 31.82 4.55
777 4222 6.127535 ACCATATATATGTACCCTTCGTTCGG 60.128 42.308 19.11 3.81 31.82 4.30
778 4223 6.860080 ACCATATATATGTACCCTTCGTTCG 58.140 40.000 19.11 4.22 31.82 3.95
779 4224 6.971184 CGACCATATATATGTACCCTTCGTTC 59.029 42.308 19.11 4.11 31.82 3.95
782 4227 6.446781 ACGACCATATATATGTACCCTTCG 57.553 41.667 19.11 16.81 31.82 3.79
785 4230 6.088541 AGGACGACCATATATATGTACCCT 57.911 41.667 19.11 14.37 38.94 4.34
786 4231 5.008415 CGAGGACGACCATATATATGTACCC 59.992 48.000 19.11 12.79 42.66 3.69
787 4232 5.819379 TCGAGGACGACCATATATATGTACC 59.181 44.000 19.11 14.01 43.81 3.34
788 4233 6.915544 TCGAGGACGACCATATATATGTAC 57.084 41.667 19.11 12.19 43.81 2.90
803 4248 2.077627 AGATATGGACGATCGAGGACG 58.922 52.381 24.34 7.66 41.26 4.79
804 4249 3.623960 CCTAGATATGGACGATCGAGGAC 59.376 52.174 24.34 9.00 44.63 3.85
805 4250 3.518303 TCCTAGATATGGACGATCGAGGA 59.482 47.826 24.34 16.60 46.72 3.71
808 4253 4.554960 ACTCCTAGATATGGACGATCGA 57.445 45.455 24.34 0.00 0.00 3.59
809 4254 5.421277 ACTACTCCTAGATATGGACGATCG 58.579 45.833 14.88 14.88 0.00 3.69
810 4255 6.403855 GCAACTACTCCTAGATATGGACGATC 60.404 46.154 0.00 0.00 0.00 3.69
813 4258 4.519350 TGCAACTACTCCTAGATATGGACG 59.481 45.833 0.00 0.00 0.00 4.79
814 4259 6.015010 ACATGCAACTACTCCTAGATATGGAC 60.015 42.308 0.00 0.00 0.00 4.02
815 4260 6.077993 ACATGCAACTACTCCTAGATATGGA 58.922 40.000 0.00 0.00 0.00 3.41
816 4261 6.352016 ACATGCAACTACTCCTAGATATGG 57.648 41.667 0.00 0.00 0.00 2.74
817 4262 7.886338 TGTACATGCAACTACTCCTAGATATG 58.114 38.462 0.00 0.00 0.00 1.78
820 4265 6.551227 TGATGTACATGCAACTACTCCTAGAT 59.449 38.462 14.43 0.00 0.00 1.98
823 4268 6.379988 TCTTGATGTACATGCAACTACTCCTA 59.620 38.462 14.43 0.00 0.00 2.94
825 4270 5.419542 TCTTGATGTACATGCAACTACTCC 58.580 41.667 14.43 0.00 0.00 3.85
826 4271 5.521735 CCTCTTGATGTACATGCAACTACTC 59.478 44.000 14.43 0.00 0.00 2.59
827 4272 5.046304 ACCTCTTGATGTACATGCAACTACT 60.046 40.000 14.43 0.00 0.00 2.57
828 4273 5.063944 CACCTCTTGATGTACATGCAACTAC 59.936 44.000 14.43 0.00 0.00 2.73
829 4274 5.046663 TCACCTCTTGATGTACATGCAACTA 60.047 40.000 14.43 5.84 0.00 2.24
830 4275 4.005650 CACCTCTTGATGTACATGCAACT 58.994 43.478 14.43 0.00 0.00 3.16
831 4276 4.002982 TCACCTCTTGATGTACATGCAAC 58.997 43.478 14.43 0.00 0.00 4.17
833 4278 3.979101 TCACCTCTTGATGTACATGCA 57.021 42.857 14.43 8.39 0.00 3.96
834 4279 3.812053 GGATCACCTCTTGATGTACATGC 59.188 47.826 14.43 5.76 45.67 4.06
835 4280 4.141642 TGGGATCACCTCTTGATGTACATG 60.142 45.833 14.43 0.00 45.67 3.21
836 4281 4.040047 TGGGATCACCTCTTGATGTACAT 58.960 43.478 8.43 8.43 45.67 2.29
837 4282 3.449918 TGGGATCACCTCTTGATGTACA 58.550 45.455 0.00 0.00 45.67 2.90
851 4301 2.103094 GGATGTCGAGTTCATGGGATCA 59.897 50.000 0.00 0.00 0.00 2.92
858 4308 3.645212 AGATGGATGGATGTCGAGTTCAT 59.355 43.478 0.00 0.00 0.00 2.57
860 4310 3.181471 ACAGATGGATGGATGTCGAGTTC 60.181 47.826 0.00 0.00 0.00 3.01
861 4311 2.768527 ACAGATGGATGGATGTCGAGTT 59.231 45.455 0.00 0.00 0.00 3.01
863 4313 3.610349 CGTACAGATGGATGGATGTCGAG 60.610 52.174 0.00 0.00 0.00 4.04
864 4314 2.293399 CGTACAGATGGATGGATGTCGA 59.707 50.000 0.00 0.00 0.00 4.20
865 4315 2.034685 ACGTACAGATGGATGGATGTCG 59.965 50.000 0.00 0.00 25.93 4.35
866 4316 3.735237 ACGTACAGATGGATGGATGTC 57.265 47.619 0.00 0.00 25.93 3.06
867 4317 4.215908 ACTACGTACAGATGGATGGATGT 58.784 43.478 0.00 0.00 37.09 3.06
868 4318 4.520874 AGACTACGTACAGATGGATGGATG 59.479 45.833 0.00 0.00 0.00 3.51
869 4319 4.730966 AGACTACGTACAGATGGATGGAT 58.269 43.478 0.00 0.00 0.00 3.41
870 4320 4.135306 GAGACTACGTACAGATGGATGGA 58.865 47.826 0.00 0.00 0.00 3.41
872 4322 4.816925 TGAGAGACTACGTACAGATGGATG 59.183 45.833 0.00 0.00 0.00 3.51
873 4323 5.037383 TGAGAGACTACGTACAGATGGAT 57.963 43.478 0.00 0.00 0.00 3.41
874 4324 4.443621 CTGAGAGACTACGTACAGATGGA 58.556 47.826 3.23 0.00 0.00 3.41
875 4325 3.002862 GCTGAGAGACTACGTACAGATGG 59.997 52.174 11.56 0.00 0.00 3.51
876 4326 3.002862 GGCTGAGAGACTACGTACAGATG 59.997 52.174 11.56 0.00 0.00 2.90
877 4327 3.207778 GGCTGAGAGACTACGTACAGAT 58.792 50.000 11.56 0.00 0.00 2.90
878 4328 2.027469 TGGCTGAGAGACTACGTACAGA 60.027 50.000 11.56 0.00 0.00 3.41
879 4329 2.357075 TGGCTGAGAGACTACGTACAG 58.643 52.381 4.68 4.68 0.00 2.74
880 4330 2.484742 TGGCTGAGAGACTACGTACA 57.515 50.000 0.00 0.00 0.00 2.90
881 4331 3.439476 TCTTTGGCTGAGAGACTACGTAC 59.561 47.826 0.00 0.00 0.00 3.67
882 4332 3.682696 TCTTTGGCTGAGAGACTACGTA 58.317 45.455 0.00 0.00 0.00 3.57
883 4333 2.490115 CTCTTTGGCTGAGAGACTACGT 59.510 50.000 10.85 0.00 42.57 3.57
884 4334 2.159310 CCTCTTTGGCTGAGAGACTACG 60.159 54.545 16.03 0.00 42.57 3.51
885 4335 2.167487 CCCTCTTTGGCTGAGAGACTAC 59.833 54.545 16.03 0.00 42.57 2.73
886 4336 2.461695 CCCTCTTTGGCTGAGAGACTA 58.538 52.381 16.03 0.00 42.57 2.59
887 4337 1.274712 CCCTCTTTGGCTGAGAGACT 58.725 55.000 16.03 0.00 42.57 3.24
888 4338 3.851051 CCCTCTTTGGCTGAGAGAC 57.149 57.895 16.03 0.00 42.57 3.36
906 4361 0.250381 ATCTGCCATGCTAGCTCTGC 60.250 55.000 17.23 15.10 0.00 4.26
907 4362 2.257691 AATCTGCCATGCTAGCTCTG 57.742 50.000 17.23 13.01 0.00 3.35
910 4365 1.030457 GCAAATCTGCCATGCTAGCT 58.970 50.000 17.23 0.00 43.26 3.32
911 4366 3.564455 GCAAATCTGCCATGCTAGC 57.436 52.632 8.10 8.10 43.26 3.42
929 4384 4.091509 GTCTTACTTAACATGCACTCACGG 59.908 45.833 0.00 0.00 0.00 4.94
985 4455 0.892755 TCGACATTTGTACGGAGCCT 59.107 50.000 0.00 0.00 0.00 4.58
1003 4473 1.076632 TCGGGGAGAAGGAGAGCTC 60.077 63.158 5.27 5.27 0.00 4.09
1013 4483 0.323542 GAGAGGAGTTGTCGGGGAGA 60.324 60.000 0.00 0.00 0.00 3.71
1115 4585 1.808411 GGCAACGAGAATGAGGTCAA 58.192 50.000 0.00 0.00 0.00 3.18
1155 4631 9.036980 ACTCCTATCCTATGTATTTTAGCGATT 57.963 33.333 0.00 0.00 0.00 3.34
1156 4632 8.596781 ACTCCTATCCTATGTATTTTAGCGAT 57.403 34.615 0.00 0.00 0.00 4.58
1158 4634 9.570488 GTTACTCCTATCCTATGTATTTTAGCG 57.430 37.037 0.00 0.00 0.00 4.26
1179 4655 7.251994 GTGACATTTGATCGAGTAGAGTTACT 58.748 38.462 0.00 0.00 42.79 2.24
1180 4656 6.194876 CGTGACATTTGATCGAGTAGAGTTAC 59.805 42.308 0.00 0.00 0.00 2.50
1196 4672 1.503818 GGTGGCGTGACGTGACATTT 61.504 55.000 6.91 0.00 0.00 2.32
1485 4975 0.753848 CGTCTTCCTCCTCCTCCTCC 60.754 65.000 0.00 0.00 0.00 4.30
1488 4978 1.378124 CGTCGTCTTCCTCCTCCTCC 61.378 65.000 0.00 0.00 0.00 4.30
1491 4981 1.378124 CCTCGTCGTCTTCCTCCTCC 61.378 65.000 0.00 0.00 0.00 4.30
1493 4983 2.047443 GCCTCGTCGTCTTCCTCCT 61.047 63.158 0.00 0.00 0.00 3.69
1494 4984 2.490685 GCCTCGTCGTCTTCCTCC 59.509 66.667 0.00 0.00 0.00 4.30
1776 5266 0.467290 GGAAGTTGTTGGCCCAGTGA 60.467 55.000 0.00 0.00 0.00 3.41
2031 5521 1.520564 GATGTACATGCCGCCGTCA 60.521 57.895 14.43 0.00 0.00 4.35
2070 5560 3.022914 GCGTTCGTATCGCCGGAG 61.023 66.667 5.05 0.00 46.61 4.63
2301 5791 1.613630 GCTGGACCTCCTCCCTTGA 60.614 63.158 0.00 0.00 38.49 3.02
2325 5821 2.183046 GACACGCTGCTCCTCCTC 59.817 66.667 0.00 0.00 0.00 3.71
2406 5902 4.962836 GCCTGTGCCTGTGCCTGT 62.963 66.667 0.00 0.00 36.33 4.00
2538 6040 1.140312 GCCCCTTGGATATGGTCTCA 58.860 55.000 0.00 0.00 0.00 3.27
2620 6222 3.587061 AGAGACAGAGAGAGAGAGGTTGA 59.413 47.826 0.00 0.00 0.00 3.18
2649 6298 1.000607 TCAGTTCACGTTTCCTCTCGG 60.001 52.381 0.00 0.00 0.00 4.63
2650 6299 2.417339 TCAGTTCACGTTTCCTCTCG 57.583 50.000 0.00 0.00 0.00 4.04
2903 6569 9.643693 AGTCAAATATTGGTCATTTGATCAAAC 57.356 29.630 22.71 11.31 46.83 2.93
2990 6661 7.274447 CCCACAATTAGCATATGGTTGAAAAT 58.726 34.615 13.49 3.84 0.00 1.82
3006 6677 2.270858 TCAGTAGGCACCCCACAATTA 58.729 47.619 0.00 0.00 0.00 1.40
3049 6720 1.001248 TACTCCCTCCGTCCCAAGG 59.999 63.158 0.00 0.00 0.00 3.61
3052 6723 0.613853 CTTGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
3053 6724 0.614134 ACTTGTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
3054 6725 0.531200 CACTTGTACTCCCTCCGTCC 59.469 60.000 0.00 0.00 0.00 4.79
3055 6726 1.473278 CTCACTTGTACTCCCTCCGTC 59.527 57.143 0.00 0.00 0.00 4.79
3056 6727 1.075050 TCTCACTTGTACTCCCTCCGT 59.925 52.381 0.00 0.00 0.00 4.69
3058 6729 2.234168 GGTTCTCACTTGTACTCCCTCC 59.766 54.545 0.00 0.00 0.00 4.30
3059 6730 2.234168 GGGTTCTCACTTGTACTCCCTC 59.766 54.545 0.00 0.00 0.00 4.30
3061 6732 2.258109 AGGGTTCTCACTTGTACTCCC 58.742 52.381 0.00 0.00 0.00 4.30
3062 6733 4.771054 TCTAAGGGTTCTCACTTGTACTCC 59.229 45.833 0.00 0.00 37.88 3.85
3063 6734 5.979288 TCTAAGGGTTCTCACTTGTACTC 57.021 43.478 0.00 0.00 37.88 2.59
3064 6735 6.497259 TCAATCTAAGGGTTCTCACTTGTACT 59.503 38.462 0.00 0.00 37.88 2.73
3065 6736 6.698380 TCAATCTAAGGGTTCTCACTTGTAC 58.302 40.000 0.00 0.00 37.88 2.90
3066 6737 6.928348 TCAATCTAAGGGTTCTCACTTGTA 57.072 37.500 0.00 0.00 37.88 2.41
3067 6738 5.825593 TCAATCTAAGGGTTCTCACTTGT 57.174 39.130 0.00 0.00 37.88 3.16
3068 6739 8.970859 ATAATCAATCTAAGGGTTCTCACTTG 57.029 34.615 0.00 0.00 37.88 3.16
3101 6772 5.591877 GGAGGGAGTACTAGTTAACGATGAA 59.408 44.000 0.00 0.00 0.00 2.57
3107 6778 4.097135 GGAACGGAGGGAGTACTAGTTAAC 59.903 50.000 0.00 0.00 0.00 2.01
3113 6784 4.591321 TTTAGGAACGGAGGGAGTACTA 57.409 45.455 0.00 0.00 0.00 1.82
3114 6785 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
3115 6786 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
3148 6819 9.355215 CGTATGTAGTCACTTGTTAAAATCTCT 57.645 33.333 0.00 0.00 0.00 3.10
3149 6820 9.350357 TCGTATGTAGTCACTTGTTAAAATCTC 57.650 33.333 0.00 0.00 0.00 2.75
3150 6821 9.701098 TTCGTATGTAGTCACTTGTTAAAATCT 57.299 29.630 0.00 0.00 0.00 2.40
3152 6823 8.440833 GCTTCGTATGTAGTCACTTGTTAAAAT 58.559 33.333 0.00 0.00 0.00 1.82
3153 6824 7.438757 TGCTTCGTATGTAGTCACTTGTTAAAA 59.561 33.333 0.00 0.00 0.00 1.52
3155 6826 6.448852 TGCTTCGTATGTAGTCACTTGTTAA 58.551 36.000 0.00 0.00 0.00 2.01
3156 6827 6.016213 TGCTTCGTATGTAGTCACTTGTTA 57.984 37.500 0.00 0.00 0.00 2.41
3158 6829 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
3159 6830 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
3160 6831 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
3161 6832 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
3163 6834 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
3164 6835 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
3204 6976 8.086522 ACCACATACGGATGTATATAGACAAAC 58.913 37.037 14.23 2.32 44.82 2.93
3205 6977 8.185506 ACCACATACGGATGTATATAGACAAA 57.814 34.615 14.23 0.00 44.82 2.83
3206 6978 7.770366 ACCACATACGGATGTATATAGACAA 57.230 36.000 14.23 0.00 44.82 3.18
3207 6979 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
3208 6980 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
3209 6981 9.170734 GAACTACCACATACGGATGTATATAGA 57.829 37.037 22.62 5.04 44.82 1.98
3210 6982 8.953313 TGAACTACCACATACGGATGTATATAG 58.047 37.037 14.23 16.35 44.82 1.31
3211 6983 8.866970 TGAACTACCACATACGGATGTATATA 57.133 34.615 14.23 5.36 44.82 0.86
3212 6984 7.770366 TGAACTACCACATACGGATGTATAT 57.230 36.000 14.23 4.37 44.82 0.86
3213 6985 7.770366 ATGAACTACCACATACGGATGTATA 57.230 36.000 14.23 8.27 44.82 1.47
3214 6986 6.665992 ATGAACTACCACATACGGATGTAT 57.334 37.500 14.23 7.46 44.82 2.29
3215 6987 6.474140 AATGAACTACCACATACGGATGTA 57.526 37.500 14.23 0.00 44.82 2.29
3254 7026 7.191593 ACTACCTCCGTTCCTAAATATTTGT 57.808 36.000 11.05 0.00 0.00 2.83
3255 7027 8.199449 TGTACTACCTCCGTTCCTAAATATTTG 58.801 37.037 11.05 1.40 0.00 2.32
3256 7028 8.310122 TGTACTACCTCCGTTCCTAAATATTT 57.690 34.615 5.89 5.89 0.00 1.40
3257 7029 7.902920 TGTACTACCTCCGTTCCTAAATATT 57.097 36.000 0.00 0.00 0.00 1.28
3266 7039 5.958955 ACTATTGTTGTACTACCTCCGTTC 58.041 41.667 4.98 0.00 0.00 3.95
3288 7105 7.698836 TTTTAAAGACTCGTGGTAGTACAAC 57.301 36.000 2.06 0.00 0.00 3.32
3316 7133 7.128109 TCCTGAAGATACATGTGGGGTATTTAA 59.872 37.037 9.11 0.00 31.84 1.52
3334 7238 8.985315 AATATATTGCAACTGATTCCTGAAGA 57.015 30.769 0.00 0.00 0.00 2.87
3339 7243 9.976511 CATTGAAATATATTGCAACTGATTCCT 57.023 29.630 19.23 0.66 38.09 3.36
3615 7557 4.403432 CAGTAGGACCAAAATGGCATCATT 59.597 41.667 0.00 0.00 42.67 2.57
3622 7564 2.689983 GCCATCAGTAGGACCAAAATGG 59.310 50.000 0.00 0.85 45.02 3.16
3862 7872 1.405661 CGAGCACCCCCTTAGTCTTTC 60.406 57.143 0.00 0.00 0.00 2.62
3863 7873 0.613777 CGAGCACCCCCTTAGTCTTT 59.386 55.000 0.00 0.00 0.00 2.52
3870 7880 2.056906 GATATGGCGAGCACCCCCTT 62.057 60.000 0.00 0.00 0.00 3.95
3924 7934 4.981674 TGAAATCGCACAGGAACAAAAATC 59.018 37.500 0.00 0.00 0.00 2.17
3935 7945 1.081892 CCTGGAGTGAAATCGCACAG 58.918 55.000 10.07 10.07 41.19 3.66
3981 7991 1.957177 GAGATCATGTAGTCCGCTGGA 59.043 52.381 0.00 0.00 0.00 3.86
4059 8069 3.322541 TGTCATCGTTGGTGAGGTAGAAA 59.677 43.478 0.00 0.00 0.00 2.52
4225 8235 4.847198 AGCACCTGATCATCATAACACAA 58.153 39.130 0.00 0.00 0.00 3.33
4365 8377 9.985730 AATGAATTCATGTGTTTTCAGTGTATT 57.014 25.926 21.39 0.00 36.56 1.89
4440 8452 4.393062 CGAACCTGAATGAAGTAGCAACAT 59.607 41.667 0.00 0.00 0.00 2.71
4464 8476 7.013083 CAGAAGAGATTCCCCATTATGACAAAG 59.987 40.741 0.00 0.00 0.00 2.77
4659 8671 5.204833 GCACGCAATTCGACATATGTAAAT 58.795 37.500 8.71 9.02 41.67 1.40
4750 8762 2.531522 GGACTTGCCTTGCATTTTGT 57.468 45.000 0.00 0.00 38.76 2.83
4761 8773 2.239907 AGAACTTCCCATAGGACTTGCC 59.760 50.000 0.00 0.00 43.90 4.52
4767 8779 6.428771 CACGTTTTTAAGAACTTCCCATAGGA 59.571 38.462 7.23 0.00 41.88 2.94
4905 8917 6.719370 AGTGAATGCCAACCAAAAGACTATAA 59.281 34.615 0.00 0.00 0.00 0.98
4956 8968 5.269554 AGAAACAAAGTATTCCATGGGGA 57.730 39.130 13.02 0.95 43.03 4.81
4998 9010 4.345837 CGGAATACCCATTACCCAGAGTAA 59.654 45.833 0.00 0.00 44.92 2.24
5008 9020 7.175990 GGCTATTTGAATTCGGAATACCCATTA 59.824 37.037 3.22 0.00 34.14 1.90
5014 9026 6.861065 TCAGGCTATTTGAATTCGGAATAC 57.139 37.500 3.22 4.11 0.00 1.89
5265 9278 1.003355 CAGGGTGATGCCGTGTTCT 60.003 57.895 0.00 0.00 45.42 3.01
5271 9284 2.360350 AGCAACAGGGTGATGCCG 60.360 61.111 5.63 0.00 45.73 5.69
5309 9322 7.739498 TCTTTCAGTTGGTATAGTTGGTTTC 57.261 36.000 0.00 0.00 0.00 2.78
5463 9482 1.391933 CCGTGGGATCACCGATGAGA 61.392 60.000 7.33 0.00 44.64 3.27
5719 9739 4.582656 ACCGAAAGAACAATCCAACAATCA 59.417 37.500 0.00 0.00 0.00 2.57
5740 9760 1.154205 CGTGCCATTGATCTCCGACC 61.154 60.000 0.00 0.00 0.00 4.79
5751 9771 3.467374 ACCAAAATTTGTCGTGCCATT 57.533 38.095 4.92 0.00 0.00 3.16
5762 9782 4.907269 ACAATCCCCAGAGAACCAAAATTT 59.093 37.500 0.00 0.00 0.00 1.82
5940 9964 1.632409 ACTGGTTCTGAGCCATGATGT 59.368 47.619 13.86 5.58 35.19 3.06
5991 10015 4.040339 GGGAAGCCCTTCTTTGATCAAAAA 59.960 41.667 20.82 15.77 41.34 1.94
6070 10094 2.872858 GTCTGAACTTGGTTCTGTGGAC 59.127 50.000 10.98 9.70 42.39 4.02
6165 10190 3.582164 GGAGGAGAGTTGGTCTGGATAT 58.418 50.000 0.00 0.00 34.71 1.63
6166 10191 2.359355 GGGAGGAGAGTTGGTCTGGATA 60.359 54.545 0.00 0.00 34.71 2.59
6214 10239 5.817816 GTGCCTGTAATGACTTAGCTTATGT 59.182 40.000 0.00 0.00 0.00 2.29
6250 10276 3.605634 TGTAATATTTGCCAGTCAGCGT 58.394 40.909 0.00 0.00 34.65 5.07
6253 10279 9.853555 TTATGTTTTGTAATATTTGCCAGTCAG 57.146 29.630 0.00 0.00 0.00 3.51
6254 10280 9.853555 CTTATGTTTTGTAATATTTGCCAGTCA 57.146 29.630 0.00 0.00 0.00 3.41
6255 10281 9.301153 CCTTATGTTTTGTAATATTTGCCAGTC 57.699 33.333 0.00 0.00 0.00 3.51
6292 10318 0.580104 CCTTGTTCCGTGTTGTCGTC 59.420 55.000 0.00 0.00 0.00 4.20
6299 10325 3.600388 GATCATCTTCCTTGTTCCGTGT 58.400 45.455 0.00 0.00 0.00 4.49
6341 10368 2.580783 TGCCTAGGCTGGATTAAAAGGT 59.419 45.455 33.07 0.00 42.51 3.50
6420 10447 2.969262 GAGCTAGAGATAGGGGCAAAGT 59.031 50.000 0.00 0.00 0.00 2.66
6421 10448 2.301583 GGAGCTAGAGATAGGGGCAAAG 59.698 54.545 0.00 0.00 0.00 2.77
6432 10459 5.445964 ACCAAAACAAAAAGGAGCTAGAGA 58.554 37.500 0.00 0.00 0.00 3.10
6436 10463 4.542697 AGGACCAAAACAAAAAGGAGCTA 58.457 39.130 0.00 0.00 0.00 3.32
6504 10531 4.073293 ACCGATCCCATTGTTCTGATAC 57.927 45.455 0.00 0.00 0.00 2.24
6505 10532 7.547697 TTATACCGATCCCATTGTTCTGATA 57.452 36.000 0.00 0.00 0.00 2.15
6511 10538 7.201965 GGGAAAAATTATACCGATCCCATTGTT 60.202 37.037 3.12 0.00 43.65 2.83
6584 10614 1.492176 AGTGCTGGTGGGATTATCAGG 59.508 52.381 0.00 0.00 0.00 3.86
6714 10744 3.736224 CATGTGGGGCTGCCTCCT 61.736 66.667 17.57 0.00 0.00 3.69
6742 10772 6.451393 CGGGAGAGAGGAAACTATTAATCAG 58.549 44.000 0.00 0.00 44.43 2.90
6757 10787 2.407428 TGTGCTACGCGGGAGAGAG 61.407 63.158 12.47 0.00 0.00 3.20
6768 10798 2.488153 GGACCCAAATCTTGTGTGCTAC 59.512 50.000 0.00 0.00 0.00 3.58
6923 10955 6.287589 ACCAAGTCTCTGTATAGGAAACTG 57.712 41.667 0.00 0.00 43.88 3.16



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.