Multiple sequence alignment - TraesCS4B01G131000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G131000 chr4B 100.000 5366 0 0 1 5366 171608770 171614135 0.000000e+00 9910.0
1 TraesCS4B01G131000 chr4B 94.656 131 7 0 5038 5168 97557137 97557007 2.530000e-48 204.0
2 TraesCS4B01G131000 chr4D 93.748 3711 157 32 1301 4966 110115256 110111576 0.000000e+00 5498.0
3 TraesCS4B01G131000 chr4D 95.062 648 15 8 643 1286 110116049 110115415 0.000000e+00 1003.0
4 TraesCS4B01G131000 chr4D 89.218 371 5 6 2 342 110116932 110116567 1.070000e-116 431.0
5 TraesCS4B01G131000 chr4D 89.571 163 5 5 5212 5366 110111442 110111284 4.240000e-46 196.0
6 TraesCS4B01G131000 chr4D 83.523 176 18 9 431 601 110116216 110116047 2.590000e-33 154.0
7 TraesCS4B01G131000 chr4D 92.157 102 4 2 4932 5029 110111574 110111473 2.010000e-29 141.0
8 TraesCS4B01G131000 chr4D 95.349 43 2 0 5151 5193 110111471 110111429 9.640000e-08 69.4
9 TraesCS4B01G131000 chr4A 92.036 3792 201 39 1296 5029 466572300 466576048 0.000000e+00 5236.0
10 TraesCS4B01G131000 chr4A 88.000 450 15 10 839 1286 466571717 466572129 3.730000e-136 496.0
11 TraesCS4B01G131000 chr4A 81.031 485 27 25 48 482 466570750 466571219 5.180000e-85 326.0
12 TraesCS4B01G131000 chr4A 96.094 128 2 3 5035 5161 252658960 252658835 7.040000e-49 206.0
13 TraesCS4B01G131000 chr4A 87.349 166 19 2 657 822 466571483 466571646 7.090000e-44 189.0
14 TraesCS4B01G131000 chr4A 89.091 110 5 1 5212 5321 466576079 466576181 4.360000e-26 130.0
15 TraesCS4B01G131000 chr4A 91.228 57 2 1 5310 5366 466578380 466578433 2.070000e-09 75.0
16 TraesCS4B01G131000 chr6B 98.374 123 2 0 5032 5154 164882912 164883034 3.250000e-52 217.0
17 TraesCS4B01G131000 chr5D 100.000 117 0 0 5038 5154 532749819 532749703 3.250000e-52 217.0
18 TraesCS4B01G131000 chr2B 98.361 122 1 1 5038 5159 788660475 788660355 4.210000e-51 213.0
19 TraesCS4B01G131000 chr2B 93.525 139 8 1 5025 5163 692166874 692166737 7.040000e-49 206.0
20 TraesCS4B01G131000 chr3B 97.561 123 3 0 5033 5155 167110141 167110019 1.510000e-50 211.0
21 TraesCS4B01G131000 chr5B 97.561 123 2 1 5038 5160 282391997 282392118 5.450000e-50 209.0
22 TraesCS4B01G131000 chr1B 96.825 126 2 1 5037 5160 12924280 12924405 5.450000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G131000 chr4B 171608770 171614135 5365 False 9910.000000 9910 100.000000 1 5366 1 chr4B.!!$F1 5365
1 TraesCS4B01G131000 chr4D 110111284 110116932 5648 True 1070.342857 5498 91.232571 2 5366 7 chr4D.!!$R1 5364
2 TraesCS4B01G131000 chr4A 466570750 466578433 7683 False 1075.333333 5236 88.122500 48 5366 6 chr4A.!!$F1 5318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 446 0.106521 AATTGGTGTGTTTGCAGCCC 59.893 50.0 0.00 0.00 36.16 5.19 F
603 977 0.107017 CAGTTCAGGGGCAGGGTATG 60.107 60.0 0.00 0.00 0.00 2.39 F
800 1252 0.179006 GGCCATGGGTCCATTCTCTC 60.179 60.0 15.13 0.00 33.90 3.20 F
1723 2412 0.108520 TTCTGGAATACGTCACCGGC 60.109 55.0 0.00 0.00 38.78 6.13 F
2345 3039 0.721718 GATTACTGCACACGACCTGC 59.278 55.0 0.00 0.00 35.03 4.85 F
4160 4900 0.106708 GTCAACTGAGAGGTGCACCA 59.893 55.0 36.39 15.99 38.89 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 2172 0.033601 GTATTGTGGCATGGACCCCA 60.034 55.000 0.00 0.00 38.19 4.96 R
1496 2173 0.258774 AGTATTGTGGCATGGACCCC 59.741 55.000 0.00 0.00 0.00 4.95 R
2324 3018 0.973632 AGGTCGTGTGCAGTAATCCA 59.026 50.000 0.00 0.00 0.00 3.41 R
2831 3525 1.406539 CAACCCTACTGGATGCATTGC 59.593 52.381 0.00 0.46 38.00 3.56 R
4220 4960 1.165270 AGGCGAAAAAGGATCAACCG 58.835 50.000 0.00 0.00 44.74 4.44 R
5131 5918 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.672781 GCAGAGAGCTCAATTTTGGCTTC 60.673 47.826 17.77 0.00 41.15 3.86
90 99 3.368236 CGCCTAACTAACTGAACTTGAGC 59.632 47.826 0.00 0.00 0.00 4.26
111 120 0.756903 TTGGCGACTATTAGCTCCCC 59.243 55.000 0.00 0.00 0.00 4.81
116 125 2.865079 CGACTATTAGCTCCCCTCAGA 58.135 52.381 0.00 0.00 0.00 3.27
117 126 3.426615 CGACTATTAGCTCCCCTCAGAT 58.573 50.000 0.00 0.00 0.00 2.90
118 127 3.192422 CGACTATTAGCTCCCCTCAGATG 59.808 52.174 0.00 0.00 0.00 2.90
121 130 0.833287 TTAGCTCCCCTCAGATGCAC 59.167 55.000 0.00 0.00 0.00 4.57
163 178 6.704289 TGCATAGGAAGAATTTCTTGATGG 57.296 37.500 16.17 3.82 36.73 3.51
164 179 5.595542 TGCATAGGAAGAATTTCTTGATGGG 59.404 40.000 16.17 4.76 36.73 4.00
165 180 5.829924 GCATAGGAAGAATTTCTTGATGGGA 59.170 40.000 16.17 0.00 36.73 4.37
166 181 6.492772 GCATAGGAAGAATTTCTTGATGGGAT 59.507 38.462 16.17 0.00 36.73 3.85
346 384 4.936891 GCCCTGCGAATATTCAAAATTCT 58.063 39.130 15.57 0.00 32.29 2.40
347 385 6.072112 GCCCTGCGAATATTCAAAATTCTA 57.928 37.500 15.57 0.00 32.29 2.10
348 386 5.915196 GCCCTGCGAATATTCAAAATTCTAC 59.085 40.000 15.57 0.00 32.29 2.59
349 387 6.459573 GCCCTGCGAATATTCAAAATTCTACA 60.460 38.462 15.57 0.00 32.29 2.74
376 434 8.931385 TCTTTCTTTCTTTCAGAAAATTGGTG 57.069 30.769 0.00 0.00 42.95 4.17
386 444 3.001533 CAGAAAATTGGTGTGTTTGCAGC 59.998 43.478 0.00 0.00 37.38 5.25
387 445 1.952193 AAATTGGTGTGTTTGCAGCC 58.048 45.000 0.00 0.00 36.16 4.85
388 446 0.106521 AATTGGTGTGTTTGCAGCCC 59.893 50.000 0.00 0.00 36.16 5.19
389 447 1.757423 ATTGGTGTGTTTGCAGCCCC 61.757 55.000 0.00 0.00 36.16 5.80
390 448 3.615709 GGTGTGTTTGCAGCCCCC 61.616 66.667 0.00 0.00 0.00 5.40
444 744 0.413434 TCCTGTCCAGTCCAGATCCA 59.587 55.000 0.00 0.00 31.38 3.41
448 748 3.077359 CTGTCCAGTCCAGATCCAAAAC 58.923 50.000 0.00 0.00 31.38 2.43
482 790 6.490381 GTCTTATTCCTTTTGACCTCCAGTTT 59.510 38.462 0.00 0.00 0.00 2.66
484 792 8.221944 TCTTATTCCTTTTGACCTCCAGTTTAA 58.778 33.333 0.00 0.00 0.00 1.52
499 816 6.553857 TCCAGTTTAATTAACTTGGCCCTTA 58.446 36.000 16.93 0.00 44.73 2.69
515 832 3.584733 CCTTAGGGGATTTCCTTGAGG 57.415 52.381 0.00 0.00 38.30 3.86
516 833 3.123273 CCTTAGGGGATTTCCTTGAGGA 58.877 50.000 0.00 0.00 39.44 3.71
517 834 3.724209 CCTTAGGGGATTTCCTTGAGGAT 59.276 47.826 0.00 0.00 39.94 3.24
518 835 4.168871 CCTTAGGGGATTTCCTTGAGGATT 59.831 45.833 0.00 0.00 39.94 3.01
560 934 9.121658 CTCCACTAGTGTACTGATTGACTTATA 57.878 37.037 21.18 0.00 0.00 0.98
595 969 0.623723 TATGGGTTCAGTTCAGGGGC 59.376 55.000 0.00 0.00 0.00 5.80
598 972 1.303643 GGTTCAGTTCAGGGGCAGG 60.304 63.158 0.00 0.00 0.00 4.85
599 973 1.303643 GTTCAGTTCAGGGGCAGGG 60.304 63.158 0.00 0.00 0.00 4.45
600 974 1.774217 TTCAGTTCAGGGGCAGGGT 60.774 57.895 0.00 0.00 0.00 4.34
601 975 0.474854 TTCAGTTCAGGGGCAGGGTA 60.475 55.000 0.00 0.00 0.00 3.69
602 976 0.253160 TCAGTTCAGGGGCAGGGTAT 60.253 55.000 0.00 0.00 0.00 2.73
603 977 0.107017 CAGTTCAGGGGCAGGGTATG 60.107 60.000 0.00 0.00 0.00 2.39
604 978 0.550147 AGTTCAGGGGCAGGGTATGT 60.550 55.000 0.00 0.00 0.00 2.29
605 979 1.209621 GTTCAGGGGCAGGGTATGTA 58.790 55.000 0.00 0.00 0.00 2.29
606 980 1.141053 GTTCAGGGGCAGGGTATGTAG 59.859 57.143 0.00 0.00 0.00 2.74
607 981 0.399949 TCAGGGGCAGGGTATGTAGG 60.400 60.000 0.00 0.00 0.00 3.18
608 982 0.694444 CAGGGGCAGGGTATGTAGGT 60.694 60.000 0.00 0.00 0.00 3.08
609 983 0.694444 AGGGGCAGGGTATGTAGGTG 60.694 60.000 0.00 0.00 0.00 4.00
610 984 1.705997 GGGGCAGGGTATGTAGGTGG 61.706 65.000 0.00 0.00 0.00 4.61
611 985 0.986550 GGGCAGGGTATGTAGGTGGT 60.987 60.000 0.00 0.00 0.00 4.16
612 986 0.180406 GGCAGGGTATGTAGGTGGTG 59.820 60.000 0.00 0.00 0.00 4.17
613 987 0.909623 GCAGGGTATGTAGGTGGTGT 59.090 55.000 0.00 0.00 0.00 4.16
614 988 1.280998 GCAGGGTATGTAGGTGGTGTT 59.719 52.381 0.00 0.00 0.00 3.32
615 989 2.290705 GCAGGGTATGTAGGTGGTGTTT 60.291 50.000 0.00 0.00 0.00 2.83
616 990 3.606687 CAGGGTATGTAGGTGGTGTTTC 58.393 50.000 0.00 0.00 0.00 2.78
617 991 2.574824 AGGGTATGTAGGTGGTGTTTCC 59.425 50.000 0.00 0.00 0.00 3.13
618 992 2.574824 GGGTATGTAGGTGGTGTTTCCT 59.425 50.000 0.00 0.00 37.80 3.36
619 993 3.009805 GGGTATGTAGGTGGTGTTTCCTT 59.990 47.826 0.00 0.00 35.51 3.36
620 994 4.259356 GGTATGTAGGTGGTGTTTCCTTC 58.741 47.826 0.00 0.00 35.51 3.46
621 995 4.019591 GGTATGTAGGTGGTGTTTCCTTCT 60.020 45.833 0.00 0.00 35.51 2.85
622 996 4.724279 ATGTAGGTGGTGTTTCCTTCTT 57.276 40.909 0.00 0.00 35.51 2.52
623 997 4.081322 TGTAGGTGGTGTTTCCTTCTTC 57.919 45.455 0.00 0.00 35.51 2.87
624 998 3.714798 TGTAGGTGGTGTTTCCTTCTTCT 59.285 43.478 0.00 0.00 35.51 2.85
625 999 3.953542 AGGTGGTGTTTCCTTCTTCTT 57.046 42.857 0.00 0.00 37.07 2.52
626 1000 4.251103 AGGTGGTGTTTCCTTCTTCTTT 57.749 40.909 0.00 0.00 37.07 2.52
627 1001 4.207955 AGGTGGTGTTTCCTTCTTCTTTC 58.792 43.478 0.00 0.00 37.07 2.62
628 1002 4.079730 AGGTGGTGTTTCCTTCTTCTTTCT 60.080 41.667 0.00 0.00 37.07 2.52
629 1003 4.645136 GGTGGTGTTTCCTTCTTCTTTCTT 59.355 41.667 0.00 0.00 37.07 2.52
630 1004 5.127194 GGTGGTGTTTCCTTCTTCTTTCTTT 59.873 40.000 0.00 0.00 37.07 2.52
631 1005 6.266323 GTGGTGTTTCCTTCTTCTTTCTTTC 58.734 40.000 0.00 0.00 37.07 2.62
632 1006 5.065988 TGGTGTTTCCTTCTTCTTTCTTTCG 59.934 40.000 0.00 0.00 37.07 3.46
633 1007 5.296035 GGTGTTTCCTTCTTCTTTCTTTCGA 59.704 40.000 0.00 0.00 0.00 3.71
634 1008 6.183360 GGTGTTTCCTTCTTCTTTCTTTCGAA 60.183 38.462 0.00 0.00 0.00 3.71
635 1009 6.687531 GTGTTTCCTTCTTCTTTCTTTCGAAC 59.312 38.462 0.00 0.00 0.00 3.95
636 1010 6.183360 TGTTTCCTTCTTCTTTCTTTCGAACC 60.183 38.462 0.00 0.00 0.00 3.62
637 1011 5.031066 TCCTTCTTCTTTCTTTCGAACCA 57.969 39.130 0.00 0.00 0.00 3.67
638 1012 5.621193 TCCTTCTTCTTTCTTTCGAACCAT 58.379 37.500 0.00 0.00 0.00 3.55
639 1013 5.470098 TCCTTCTTCTTTCTTTCGAACCATG 59.530 40.000 0.00 0.00 0.00 3.66
640 1014 4.749245 TCTTCTTTCTTTCGAACCATGC 57.251 40.909 0.00 0.00 0.00 4.06
641 1015 4.133820 TCTTCTTTCTTTCGAACCATGCA 58.866 39.130 0.00 0.00 0.00 3.96
682 1134 9.868389 CATGTATGTAAACATAGTAATGCACAG 57.132 33.333 3.06 0.00 39.29 3.66
800 1252 0.179006 GGCCATGGGTCCATTCTCTC 60.179 60.000 15.13 0.00 33.90 3.20
824 1276 4.005650 AGTGCCACAAGATGATAACTGTG 58.994 43.478 0.00 0.00 0.00 3.66
843 1349 1.862201 TGTTTTTCTGTAGTGCCGTCG 59.138 47.619 0.00 0.00 0.00 5.12
931 1437 3.723348 GGAAACGGAGCCACACGC 61.723 66.667 0.00 0.00 37.98 5.34
933 1439 4.250305 AAACGGAGCCACACGCCT 62.250 61.111 0.00 0.00 38.78 5.52
934 1440 4.988598 AACGGAGCCACACGCCTG 62.989 66.667 0.00 0.00 38.78 4.85
938 1444 4.008933 GAGCCACACGCCTGACCT 62.009 66.667 0.00 0.00 38.78 3.85
939 1445 4.320456 AGCCACACGCCTGACCTG 62.320 66.667 0.00 0.00 38.78 4.00
940 1446 4.314440 GCCACACGCCTGACCTGA 62.314 66.667 0.00 0.00 0.00 3.86
941 1447 2.047844 CCACACGCCTGACCTGAG 60.048 66.667 0.00 0.00 0.00 3.35
942 1448 2.047844 CACACGCCTGACCTGAGG 60.048 66.667 0.00 0.00 36.03 3.86
943 1449 2.524394 ACACGCCTGACCTGAGGT 60.524 61.111 2.41 2.41 39.44 3.85
944 1450 2.140792 ACACGCCTGACCTGAGGTT 61.141 57.895 5.21 0.00 35.25 3.50
945 1451 1.071471 CACGCCTGACCTGAGGTTT 59.929 57.895 5.21 0.00 35.25 3.27
946 1452 1.071471 ACGCCTGACCTGAGGTTTG 59.929 57.895 5.21 1.37 35.25 2.93
947 1453 2.328099 CGCCTGACCTGAGGTTTGC 61.328 63.158 5.21 8.23 35.25 3.68
948 1454 1.228245 GCCTGACCTGAGGTTTGCA 60.228 57.895 5.21 0.00 35.25 4.08
949 1455 1.239968 GCCTGACCTGAGGTTTGCAG 61.240 60.000 5.21 8.77 35.25 4.41
950 1456 0.397941 CCTGACCTGAGGTTTGCAGA 59.602 55.000 17.58 0.00 35.25 4.26
951 1457 1.610102 CCTGACCTGAGGTTTGCAGAG 60.610 57.143 17.58 6.64 35.25 3.35
952 1458 0.397941 TGACCTGAGGTTTGCAGAGG 59.602 55.000 5.21 0.00 35.25 3.69
967 1473 0.912006 AGAGGGAGGTTTCCAGAGGC 60.912 60.000 0.00 0.00 45.98 4.70
1191 1701 3.637273 ACTCTCCAACGCCCACCC 61.637 66.667 0.00 0.00 0.00 4.61
1192 1702 3.322466 CTCTCCAACGCCCACCCT 61.322 66.667 0.00 0.00 0.00 4.34
1193 1703 3.316573 CTCTCCAACGCCCACCCTC 62.317 68.421 0.00 0.00 0.00 4.30
1194 1704 3.322466 CTCCAACGCCCACCCTCT 61.322 66.667 0.00 0.00 0.00 3.69
1196 1706 1.536907 TCCAACGCCCACCCTCTAA 60.537 57.895 0.00 0.00 0.00 2.10
1232 1743 5.830000 TGCTCCTCAATCATCATTTCTTG 57.170 39.130 0.00 0.00 0.00 3.02
1281 1792 2.238319 TACGATGGGTCCTCCTGCCT 62.238 60.000 0.00 0.00 36.20 4.75
1286 1797 1.383803 GGGTCCTCCTGCCTCATCT 60.384 63.158 0.00 0.00 0.00 2.90
1287 1798 0.985490 GGGTCCTCCTGCCTCATCTT 60.985 60.000 0.00 0.00 0.00 2.40
1289 1800 1.283321 GGTCCTCCTGCCTCATCTTTT 59.717 52.381 0.00 0.00 0.00 2.27
1376 2050 2.095263 CGGGAAATTGCAACGATGAAGT 60.095 45.455 0.00 0.00 0.00 3.01
1400 2074 5.263599 TGATTAAGCATCCCAATGTTGTCT 58.736 37.500 0.00 0.00 35.18 3.41
1415 2089 3.194755 TGTTGTCTGCATACACGAGGTAT 59.805 43.478 4.13 0.00 43.53 2.73
1422 2096 3.951680 TGCATACACGAGGTATCTCAAGA 59.048 43.478 3.42 0.00 40.76 3.02
1427 2101 5.661056 ACACGAGGTATCTCAAGAAATCA 57.339 39.130 3.42 0.00 39.95 2.57
1450 2124 7.751732 TCACCATTTCTATCTTGTTTTCGATG 58.248 34.615 0.00 0.00 0.00 3.84
1451 2125 6.470235 CACCATTTCTATCTTGTTTTCGATGC 59.530 38.462 0.00 0.00 0.00 3.91
1494 2171 5.112220 TGTTCAGAAAAGTGCATCATGTC 57.888 39.130 0.00 0.00 0.00 3.06
1495 2172 4.823442 TGTTCAGAAAAGTGCATCATGTCT 59.177 37.500 0.00 0.00 0.00 3.41
1496 2173 5.152097 GTTCAGAAAAGTGCATCATGTCTG 58.848 41.667 9.21 9.21 33.82 3.51
1498 2175 3.087031 AGAAAAGTGCATCATGTCTGGG 58.913 45.455 0.00 0.00 0.00 4.45
1499 2176 1.843368 AAAGTGCATCATGTCTGGGG 58.157 50.000 0.00 0.00 0.00 4.96
1530 2219 4.093998 CACAATACTACTCAAAGCCAGCTG 59.906 45.833 6.78 6.78 0.00 4.24
1572 2261 4.320494 CCTCAACCATAAAGCTGTTGTCAC 60.320 45.833 12.13 0.00 40.13 3.67
1582 2271 4.789012 AGCTGTTGTCACAAATATTGGG 57.211 40.909 0.00 0.00 34.65 4.12
1598 2287 2.645730 TGGGCGCAATTATTTGACAC 57.354 45.000 10.83 0.00 34.60 3.67
1624 2313 6.659242 GTCTGTTTTAATCTCATCAGGGGAAA 59.341 38.462 0.00 0.00 0.00 3.13
1625 2314 6.659242 TCTGTTTTAATCTCATCAGGGGAAAC 59.341 38.462 0.00 0.00 0.00 2.78
1626 2315 6.552008 TGTTTTAATCTCATCAGGGGAAACT 58.448 36.000 0.00 0.00 0.00 2.66
1627 2316 6.434028 TGTTTTAATCTCATCAGGGGAAACTG 59.566 38.462 0.00 0.00 39.84 3.16
1628 2317 2.725221 ATCTCATCAGGGGAAACTGC 57.275 50.000 0.00 0.00 38.36 4.40
1629 2318 1.661463 TCTCATCAGGGGAAACTGCT 58.339 50.000 0.00 0.00 38.36 4.24
1630 2319 2.832838 TCTCATCAGGGGAAACTGCTA 58.167 47.619 0.00 0.00 38.36 3.49
1631 2320 3.181329 TCTCATCAGGGGAAACTGCTAA 58.819 45.455 0.00 0.00 38.36 3.09
1634 2323 5.608437 TCTCATCAGGGGAAACTGCTAATAT 59.392 40.000 0.00 0.00 38.36 1.28
1642 2331 9.739276 CAGGGGAAACTGCTAATATTATTATCA 57.261 33.333 0.00 0.00 0.00 2.15
1690 2379 1.273327 CAGGTGATGGGAAGCAAAACC 59.727 52.381 0.00 0.00 0.00 3.27
1693 2382 2.289010 GGTGATGGGAAGCAAAACCAAG 60.289 50.000 0.00 0.00 37.89 3.61
1706 2395 6.681777 AGCAAAACCAAGATCTACATTGTTC 58.318 36.000 0.00 0.00 0.00 3.18
1723 2412 0.108520 TTCTGGAATACGTCACCGGC 60.109 55.000 0.00 0.00 38.78 6.13
1751 2440 6.305693 AGCTCTTTGACACAATTGTAAGTC 57.694 37.500 17.79 17.79 35.47 3.01
1824 2513 3.044235 TCAGCACACACAGGATTACAG 57.956 47.619 0.00 0.00 0.00 2.74
1923 2614 3.181329 TGAGGCAAGGAGATACTTCCAA 58.819 45.455 0.00 0.00 39.84 3.53
2015 2706 0.809385 CCATCTCTGCTGCCTGTTTG 59.191 55.000 0.00 0.00 0.00 2.93
2028 2719 1.270550 CCTGTTTGTCCTGTCAATGCC 59.729 52.381 0.00 0.00 0.00 4.40
2204 2898 8.383175 ACTCCTAAGTTATCATGGAAGTTTTCA 58.617 33.333 6.65 0.00 28.74 2.69
2227 2921 9.607988 TTCAGAGTTCACACTTTTCTGTATTAA 57.392 29.630 0.00 0.00 31.22 1.40
2262 2956 5.163561 TGTTCCTTTGATGTTCAAACACTCC 60.164 40.000 0.00 0.00 41.02 3.85
2265 2959 4.499696 CCTTTGATGTTCAAACACTCCCAC 60.500 45.833 0.00 0.00 41.02 4.61
2280 2974 4.512944 CACTCCCACATATTCATTCTTCCG 59.487 45.833 0.00 0.00 0.00 4.30
2342 3036 1.933853 GATGGATTACTGCACACGACC 59.066 52.381 0.00 0.00 0.00 4.79
2345 3039 0.721718 GATTACTGCACACGACCTGC 59.278 55.000 0.00 0.00 35.03 4.85
2369 3063 3.500982 CACTCCAAATTATGTTGCACCG 58.499 45.455 0.00 0.00 0.00 4.94
2395 3089 9.841880 GGAGGTAATTTCAGAAATTTGTAGAAC 57.158 33.333 23.24 14.82 41.16 3.01
2402 3096 6.877611 TCAGAAATTTGTAGAACCTGAACC 57.122 37.500 0.00 0.00 0.00 3.62
2403 3097 5.468746 TCAGAAATTTGTAGAACCTGAACCG 59.531 40.000 0.00 0.00 0.00 4.44
2442 3136 9.227777 GACATTAATTTCTAACCAAGTACCACT 57.772 33.333 0.00 0.00 0.00 4.00
2607 3301 3.309954 GGCCTTGTATAAGAAAGTGAGCG 59.690 47.826 0.00 0.00 35.92 5.03
2611 3305 5.408604 CCTTGTATAAGAAAGTGAGCGTTGT 59.591 40.000 0.00 0.00 35.92 3.32
2635 3329 7.763528 TGTACTTCTTTTGGTTTACTGTTACGA 59.236 33.333 0.00 0.00 0.00 3.43
2669 3363 7.597369 TGTTCATGCTGATTTGATTTTTCTCTG 59.403 33.333 0.00 0.00 0.00 3.35
2689 3383 7.440198 TCTCTGTTATTCCTTGCAGATATCAG 58.560 38.462 5.32 0.00 37.36 2.90
2769 3463 5.068636 AGAATCCTTGATCCAAATCCGATG 58.931 41.667 0.00 0.00 0.00 3.84
2810 3504 6.491403 ACAAGAGCTCATTGAACCAATACTTT 59.509 34.615 23.88 1.43 32.35 2.66
2846 3540 1.596260 CTCACGCAATGCATCCAGTAG 59.404 52.381 5.91 0.00 0.00 2.57
2877 3571 3.928727 AACATGCTGTCAGTTCCATTG 57.071 42.857 0.93 0.00 0.00 2.82
2949 3643 2.240667 AGAGATGGTGTTCAATCAGGGG 59.759 50.000 0.00 0.00 0.00 4.79
2977 3671 3.281727 TCCCACATCTTGCTCCATAAC 57.718 47.619 0.00 0.00 0.00 1.89
3101 3796 4.632153 AGAAGTATGACACAACACTGGAC 58.368 43.478 0.00 0.00 0.00 4.02
3224 3919 9.816354 GGTTCGGTATTACTAACCAGTTTTATA 57.184 33.333 18.68 0.00 40.89 0.98
3243 3938 8.847196 GTTTTATAACTCTGGTTTGACTTCCTT 58.153 33.333 0.00 0.00 36.92 3.36
3327 4022 1.999648 TTTCAATGTCAGCAGGCCTT 58.000 45.000 0.00 0.00 0.00 4.35
3357 4052 5.937540 TGGAAATTTATTCGACTCTGAGCAA 59.062 36.000 4.19 0.00 0.00 3.91
3364 4059 3.833545 TCGACTCTGAGCAAGTAAGAC 57.166 47.619 4.19 0.00 0.00 3.01
3377 4072 8.318412 TGAGCAAGTAAGACAACATCCTAATAA 58.682 33.333 0.00 0.00 0.00 1.40
3382 4077 8.475331 AGTAAGACAACATCCTAATAACAACG 57.525 34.615 0.00 0.00 0.00 4.10
3802 4525 4.165779 CCACGCAAAGCTTGGTTTAATAG 58.834 43.478 0.00 0.00 42.03 1.73
3804 4527 3.506067 ACGCAAAGCTTGGTTTAATAGCT 59.494 39.130 0.00 0.00 46.63 3.32
3813 4536 3.331150 TGGTTTAATAGCTGTCCACACG 58.669 45.455 0.00 0.00 0.00 4.49
3822 4545 4.946784 AGCTGTCCACACGATTATTTTC 57.053 40.909 0.00 0.00 0.00 2.29
3833 4558 9.289303 CCACACGATTATTTTCCTTAAAAGATG 57.711 33.333 0.00 0.00 37.97 2.90
3901 4640 5.321959 TGTTTGATCAGCTGAGACTAGAG 57.678 43.478 22.96 0.00 0.00 2.43
3928 4667 1.158007 AAGCAGGAAGGAAGGGGAAA 58.842 50.000 0.00 0.00 0.00 3.13
3952 4691 5.128171 ACTCAATGTTGCTACCGAGGTAATA 59.872 40.000 3.37 0.00 0.00 0.98
3981 4720 7.568349 AGAATATGCTGAACTGAATCCACTTA 58.432 34.615 0.00 0.00 0.00 2.24
3982 4721 7.497249 AGAATATGCTGAACTGAATCCACTTAC 59.503 37.037 0.00 0.00 0.00 2.34
4000 4739 7.709613 TCCACTTACAAGTTAACTTCTTCAGTC 59.290 37.037 18.00 0.00 37.08 3.51
4042 4781 3.004419 TCATTTAGATACTGCGAGTCGGG 59.996 47.826 15.52 0.00 0.00 5.14
4134 4874 9.752961 TTATCATGCAATTATGATTTGGAAGTG 57.247 29.630 8.61 0.00 43.41 3.16
4160 4900 0.106708 GTCAACTGAGAGGTGCACCA 59.893 55.000 36.39 15.99 38.89 4.17
4174 4914 1.074405 TGCACCAATTCCTGCTTCTCT 59.926 47.619 5.65 0.00 34.29 3.10
4199 4939 2.014857 TCAGTAATCTGGACTCGACGG 58.985 52.381 0.00 0.00 41.59 4.79
4220 4960 3.181484 GGGTTACCGGGATTGTAAATTGC 60.181 47.826 6.32 0.00 30.52 3.56
4272 5013 8.794406 CGCCAATTTGTACTGAAATACATAAAC 58.206 33.333 0.00 0.00 35.04 2.01
4329 5070 3.547054 AACACCTTGAAGGACGTTGTA 57.453 42.857 19.83 0.00 37.67 2.41
4479 5221 4.575236 TGTTCACCGCATTTTGTAAGTACA 59.425 37.500 0.00 0.00 0.00 2.90
4502 5244 0.464554 GGATAGCCCTGTTGTCAGCC 60.465 60.000 0.00 0.00 40.09 4.85
4507 5249 3.357079 CCTGTTGTCAGCCGTGCC 61.357 66.667 0.00 0.00 40.09 5.01
4550 5292 3.909776 TGCTGCATTTTGAGAGACTTG 57.090 42.857 0.00 0.00 0.00 3.16
4615 5357 6.427441 TGTATATTAGGCATGTGGGTTTTCA 58.573 36.000 0.00 0.00 0.00 2.69
4627 5369 2.156098 GGGTTTTCACAAGCCGTATCA 58.844 47.619 0.00 0.00 34.04 2.15
4640 5382 3.071479 GCCGTATCAAGTTCACTTTGGA 58.929 45.455 0.00 0.00 33.11 3.53
4641 5383 3.500680 GCCGTATCAAGTTCACTTTGGAA 59.499 43.478 0.00 0.00 33.11 3.53
4642 5384 4.612939 GCCGTATCAAGTTCACTTTGGAAC 60.613 45.833 0.00 0.00 45.87 3.62
4660 5402 3.989817 GGAACAACAATGCAATCAGGAAC 59.010 43.478 0.00 0.00 0.00 3.62
4743 5489 5.418524 CCCATTGTAAATTGTGAGACCATGA 59.581 40.000 0.00 0.00 0.00 3.07
4772 5519 6.582437 ATTTCTTGTTTTTGCCTTGTTACG 57.418 33.333 0.00 0.00 0.00 3.18
4812 5559 4.393371 GCTGTAAATCAGAACTGAAGGGTC 59.607 45.833 8.59 0.98 46.27 4.46
4818 5565 3.808728 TCAGAACTGAAGGGTCAAACAG 58.191 45.455 1.79 0.00 36.53 3.16
4943 5726 2.801077 TCTCTGGTACCATCTCACGA 57.199 50.000 16.75 7.09 0.00 4.35
4951 5734 3.432252 GGTACCATCTCACGACTGTTTTG 59.568 47.826 7.15 0.00 0.00 2.44
5011 5794 2.227149 GCAACATGCACTGTGAGATTGA 59.773 45.455 12.86 0.00 44.26 2.57
5020 5807 5.049474 TGCACTGTGAGATTGAAACACATAC 60.049 40.000 12.86 0.00 42.30 2.39
5029 5816 7.280876 TGAGATTGAAACACATACCATTCTAGC 59.719 37.037 0.00 0.00 0.00 3.42
5030 5817 7.112122 AGATTGAAACACATACCATTCTAGCA 58.888 34.615 0.00 0.00 0.00 3.49
5031 5818 6.494893 TTGAAACACATACCATTCTAGCAC 57.505 37.500 0.00 0.00 0.00 4.40
5032 5819 5.555966 TGAAACACATACCATTCTAGCACA 58.444 37.500 0.00 0.00 0.00 4.57
5033 5820 5.643348 TGAAACACATACCATTCTAGCACAG 59.357 40.000 0.00 0.00 0.00 3.66
5034 5821 4.826274 ACACATACCATTCTAGCACAGT 57.174 40.909 0.00 0.00 0.00 3.55
5035 5822 5.932619 ACACATACCATTCTAGCACAGTA 57.067 39.130 0.00 0.00 0.00 2.74
5036 5823 5.907207 ACACATACCATTCTAGCACAGTAG 58.093 41.667 0.00 0.00 0.00 2.57
5037 5824 5.422331 ACACATACCATTCTAGCACAGTAGT 59.578 40.000 0.00 0.00 0.00 2.73
5038 5825 6.605995 ACACATACCATTCTAGCACAGTAGTA 59.394 38.462 0.00 0.00 0.00 1.82
5039 5826 6.918569 CACATACCATTCTAGCACAGTAGTAC 59.081 42.308 0.00 0.00 0.00 2.73
5040 5827 6.834451 ACATACCATTCTAGCACAGTAGTACT 59.166 38.462 0.00 0.00 0.00 2.73
5041 5828 5.838531 ACCATTCTAGCACAGTAGTACTC 57.161 43.478 0.00 0.00 0.00 2.59
5042 5829 4.645588 ACCATTCTAGCACAGTAGTACTCC 59.354 45.833 0.00 0.00 0.00 3.85
5043 5830 4.038162 CCATTCTAGCACAGTAGTACTCCC 59.962 50.000 0.00 0.00 0.00 4.30
5044 5831 4.587976 TTCTAGCACAGTAGTACTCCCT 57.412 45.455 0.00 0.00 0.00 4.20
5045 5832 4.153673 TCTAGCACAGTAGTACTCCCTC 57.846 50.000 0.00 0.00 0.00 4.30
5046 5833 2.146920 AGCACAGTAGTACTCCCTCC 57.853 55.000 0.00 0.00 0.00 4.30
5047 5834 0.739561 GCACAGTAGTACTCCCTCCG 59.260 60.000 0.00 0.00 0.00 4.63
5048 5835 1.954258 GCACAGTAGTACTCCCTCCGT 60.954 57.143 0.00 0.00 0.00 4.69
5049 5836 2.015587 CACAGTAGTACTCCCTCCGTC 58.984 57.143 0.00 0.00 0.00 4.79
5050 5837 1.914798 ACAGTAGTACTCCCTCCGTCT 59.085 52.381 0.00 0.00 0.00 4.18
5051 5838 2.290464 CAGTAGTACTCCCTCCGTCTG 58.710 57.143 0.00 0.00 0.00 3.51
5052 5839 1.212441 AGTAGTACTCCCTCCGTCTGG 59.788 57.143 0.00 0.00 0.00 3.86
5053 5840 1.211457 GTAGTACTCCCTCCGTCTGGA 59.789 57.143 0.00 0.00 43.88 3.86
5054 5841 0.702902 AGTACTCCCTCCGTCTGGAA 59.297 55.000 0.00 0.00 45.87 3.53
5055 5842 1.076677 AGTACTCCCTCCGTCTGGAAA 59.923 52.381 0.00 0.00 45.87 3.13
5056 5843 2.108970 GTACTCCCTCCGTCTGGAAAT 58.891 52.381 0.00 0.00 45.87 2.17
5057 5844 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
5058 5845 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
5059 5846 2.292323 ACTCCCTCCGTCTGGAAATACT 60.292 50.000 0.00 0.00 45.87 2.12
5060 5847 2.766828 CTCCCTCCGTCTGGAAATACTT 59.233 50.000 0.00 0.00 45.87 2.24
5061 5848 2.500098 TCCCTCCGTCTGGAAATACTTG 59.500 50.000 0.00 0.00 45.87 3.16
5062 5849 2.236395 CCCTCCGTCTGGAAATACTTGT 59.764 50.000 0.00 0.00 45.87 3.16
5063 5850 3.522553 CCTCCGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
5064 5851 3.056107 CCTCCGTCTGGAAATACTTGTCA 60.056 47.826 0.00 0.00 45.87 3.58
5065 5852 4.383118 CCTCCGTCTGGAAATACTTGTCAT 60.383 45.833 0.00 0.00 45.87 3.06
5066 5853 4.755411 TCCGTCTGGAAATACTTGTCATC 58.245 43.478 0.00 0.00 42.85 2.92
5067 5854 4.221924 TCCGTCTGGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 42.85 3.07
5068 5855 4.935205 CCGTCTGGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 37.49 2.57
5069 5856 5.411361 CCGTCTGGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 37.49 2.69
5070 5857 6.072728 CCGTCTGGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 37.49 2.44
5071 5858 7.362056 CCGTCTGGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 37.49 1.82
5072 5859 7.482743 CGTCTGGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
5073 5860 7.756722 GTCTGGAAATACTTGTCATCAAAATGG 59.243 37.037 0.00 0.00 33.42 3.16
5074 5861 7.669304 TCTGGAAATACTTGTCATCAAAATGGA 59.331 33.333 0.00 0.00 33.42 3.41
5075 5862 8.365060 TGGAAATACTTGTCATCAAAATGGAT 57.635 30.769 0.00 0.00 33.42 3.41
5076 5863 8.252417 TGGAAATACTTGTCATCAAAATGGATG 58.748 33.333 0.00 0.00 44.78 3.51
5089 5876 9.772973 CATCAAAATGGATGAAAATGGATGTAT 57.227 29.630 0.00 0.00 46.00 2.29
5090 5877 9.991906 ATCAAAATGGATGAAAATGGATGTATC 57.008 29.630 0.00 0.00 0.00 2.24
5091 5878 9.204337 TCAAAATGGATGAAAATGGATGTATCT 57.796 29.630 0.00 0.00 0.00 1.98
5096 5883 8.908786 TGGATGAAAATGGATGTATCTAGAAC 57.091 34.615 0.00 0.00 0.00 3.01
5097 5884 8.717717 TGGATGAAAATGGATGTATCTAGAACT 58.282 33.333 0.00 0.00 0.00 3.01
5129 5916 9.499479 ACATCTAGATACATCCATTTCAATGAC 57.501 33.333 4.54 0.00 38.70 3.06
5130 5917 9.498176 CATCTAGATACATCCATTTCAATGACA 57.502 33.333 4.54 0.00 38.70 3.58
5132 5919 9.551734 TCTAGATACATCCATTTCAATGACAAG 57.448 33.333 0.81 0.00 38.70 3.16
5133 5920 9.334947 CTAGATACATCCATTTCAATGACAAGT 57.665 33.333 0.81 0.00 38.70 3.16
5135 5922 9.857656 AGATACATCCATTTCAATGACAAGTAT 57.142 29.630 0.81 4.50 38.70 2.12
5139 5926 8.253113 ACATCCATTTCAATGACAAGTATTTCC 58.747 33.333 0.81 0.00 38.70 3.13
5140 5927 6.851609 TCCATTTCAATGACAAGTATTTCCG 58.148 36.000 0.81 0.00 38.70 4.30
5141 5928 6.035843 CCATTTCAATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 38.70 5.14
5142 5929 6.127758 CCATTTCAATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 38.70 5.14
5143 5930 5.873179 TTCAATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 0.00 4.79
5144 5931 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
5145 5932 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
5146 5933 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
5147 5934 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
5148 5935 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5149 5936 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5162 5949 4.888239 CGGACGGAGGGAGTATCATATATT 59.112 45.833 0.00 0.00 36.25 1.28
5163 5950 5.221067 CGGACGGAGGGAGTATCATATATTG 60.221 48.000 0.00 0.00 36.25 1.90
5193 5980 0.948623 TGCTCATCGTGGTTTCGGTG 60.949 55.000 0.00 0.00 42.40 4.94
5194 5981 1.787847 CTCATCGTGGTTTCGGTGC 59.212 57.895 0.00 0.00 41.06 5.01
5195 5982 1.635663 CTCATCGTGGTTTCGGTGCC 61.636 60.000 0.00 0.00 41.06 5.01
5196 5983 1.671054 CATCGTGGTTTCGGTGCCT 60.671 57.895 0.00 0.00 35.23 4.75
5197 5984 1.072505 ATCGTGGTTTCGGTGCCTT 59.927 52.632 0.00 0.00 0.00 4.35
5198 5985 0.536460 ATCGTGGTTTCGGTGCCTTT 60.536 50.000 0.00 0.00 0.00 3.11
5200 5987 0.317519 CGTGGTTTCGGTGCCTTTTC 60.318 55.000 0.00 0.00 0.00 2.29
5201 5988 0.741915 GTGGTTTCGGTGCCTTTTCA 59.258 50.000 0.00 0.00 0.00 2.69
5202 5989 1.135333 GTGGTTTCGGTGCCTTTTCAA 59.865 47.619 0.00 0.00 0.00 2.69
5203 5990 1.825474 TGGTTTCGGTGCCTTTTCAAA 59.175 42.857 0.00 0.00 0.00 2.69
5204 5991 2.233922 TGGTTTCGGTGCCTTTTCAAAA 59.766 40.909 0.00 0.00 0.00 2.44
5205 5992 3.263261 GGTTTCGGTGCCTTTTCAAAAA 58.737 40.909 0.00 0.00 0.00 1.94
5246 6033 1.335145 AAGATGCTGCCTTGCAAGTT 58.665 45.000 24.35 7.24 46.61 2.66
5247 6034 0.601558 AGATGCTGCCTTGCAAGTTG 59.398 50.000 24.35 14.45 46.61 3.16
5248 6035 1.005394 ATGCTGCCTTGCAAGTTGC 60.005 52.632 24.35 21.17 46.61 4.17
5337 8341 2.299867 GGTGGAGTGTACCCTCGTTTAA 59.700 50.000 0.00 0.00 31.98 1.52
5353 8357 3.315418 GTTTAATACTCCGGCCGATCTC 58.685 50.000 30.73 1.55 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 78 3.685272 GGCTCAAGTTCAGTTAGTTAGGC 59.315 47.826 0.00 0.00 0.00 3.93
90 99 1.270358 GGGAGCTAATAGTCGCCAAGG 60.270 57.143 0.00 0.00 0.00 3.61
111 120 2.606308 GCACCAAGTTTGTGCATCTGAG 60.606 50.000 23.24 0.00 42.98 3.35
116 125 1.050204 ATGGCACCAAGTTTGTGCAT 58.950 45.000 27.50 17.94 45.02 3.96
117 126 0.829333 AATGGCACCAAGTTTGTGCA 59.171 45.000 27.50 16.77 45.02 4.57
118 127 1.069049 AGAATGGCACCAAGTTTGTGC 59.931 47.619 20.82 20.82 42.76 4.57
121 130 2.545106 GCAAAGAATGGCACCAAGTTTG 59.455 45.455 13.46 13.46 32.20 2.93
163 178 2.393646 CTAGGCCCTATAGCTCCATCC 58.606 57.143 0.00 0.00 0.00 3.51
164 179 2.393646 CCTAGGCCCTATAGCTCCATC 58.606 57.143 0.00 0.00 0.00 3.51
165 180 1.008938 CCCTAGGCCCTATAGCTCCAT 59.991 57.143 2.05 0.00 0.00 3.41
166 181 0.413832 CCCTAGGCCCTATAGCTCCA 59.586 60.000 2.05 0.00 0.00 3.86
366 422 2.287644 GGCTGCAAACACACCAATTTTC 59.712 45.455 0.50 0.00 0.00 2.29
391 449 4.988598 AACTGGGCACGCACGAGG 62.989 66.667 0.00 0.00 0.00 4.63
392 450 2.954753 GAAACTGGGCACGCACGAG 61.955 63.158 0.00 0.00 0.00 4.18
393 451 2.970324 GAAACTGGGCACGCACGA 60.970 61.111 0.00 0.00 0.00 4.35
394 452 2.128853 AATGAAACTGGGCACGCACG 62.129 55.000 0.00 0.00 0.00 5.34
444 744 1.886886 ATAAGACCGCCGTGTGTTTT 58.113 45.000 0.00 0.00 0.00 2.43
448 748 0.108329 AGGAATAAGACCGCCGTGTG 60.108 55.000 0.00 0.00 0.00 3.82
508 825 8.722394 GTTGTTTAGTAGAGAAAATCCTCAAGG 58.278 37.037 0.00 0.00 35.68 3.61
509 826 9.495572 AGTTGTTTAGTAGAGAAAATCCTCAAG 57.504 33.333 0.00 0.00 35.68 3.02
510 827 9.490379 GAGTTGTTTAGTAGAGAAAATCCTCAA 57.510 33.333 0.00 0.00 35.68 3.02
511 828 8.095169 GGAGTTGTTTAGTAGAGAAAATCCTCA 58.905 37.037 0.00 0.00 35.68 3.86
512 829 8.095169 TGGAGTTGTTTAGTAGAGAAAATCCTC 58.905 37.037 0.00 0.00 0.00 3.71
513 830 7.878644 GTGGAGTTGTTTAGTAGAGAAAATCCT 59.121 37.037 0.00 0.00 0.00 3.24
514 831 7.878644 AGTGGAGTTGTTTAGTAGAGAAAATCC 59.121 37.037 0.00 0.00 0.00 3.01
515 832 8.834749 AGTGGAGTTGTTTAGTAGAGAAAATC 57.165 34.615 0.00 0.00 0.00 2.17
516 833 9.930693 CTAGTGGAGTTGTTTAGTAGAGAAAAT 57.069 33.333 0.00 0.00 0.00 1.82
517 834 8.921205 ACTAGTGGAGTTGTTTAGTAGAGAAAA 58.079 33.333 0.00 0.00 33.13 2.29
518 835 8.358148 CACTAGTGGAGTTGTTTAGTAGAGAAA 58.642 37.037 15.49 0.00 35.64 2.52
560 934 8.415950 TGAACCCATAAATAAGTTGTGTGAAT 57.584 30.769 0.00 0.00 0.00 2.57
595 969 3.606687 GAAACACCACCTACATACCCTG 58.393 50.000 0.00 0.00 0.00 4.45
598 972 3.994931 AGGAAACACCACCTACATACC 57.005 47.619 0.00 0.00 42.04 2.73
599 973 5.161943 AGAAGGAAACACCACCTACATAC 57.838 43.478 0.00 0.00 42.04 2.39
600 974 5.546499 AGAAGAAGGAAACACCACCTACATA 59.454 40.000 0.00 0.00 42.04 2.29
601 975 4.351111 AGAAGAAGGAAACACCACCTACAT 59.649 41.667 0.00 0.00 42.04 2.29
602 976 3.714798 AGAAGAAGGAAACACCACCTACA 59.285 43.478 0.00 0.00 42.04 2.74
603 977 4.353383 AGAAGAAGGAAACACCACCTAC 57.647 45.455 0.00 0.00 42.04 3.18
604 978 5.132144 AGAAAGAAGAAGGAAACACCACCTA 59.868 40.000 0.00 0.00 42.04 3.08
605 979 3.953542 AAGAAGAAGGAAACACCACCT 57.046 42.857 0.00 0.00 42.04 4.00
606 980 4.207955 AGAAAGAAGAAGGAAACACCACC 58.792 43.478 0.00 0.00 42.04 4.61
607 981 5.836821 AAGAAAGAAGAAGGAAACACCAC 57.163 39.130 0.00 0.00 42.04 4.16
608 982 5.065988 CGAAAGAAAGAAGAAGGAAACACCA 59.934 40.000 0.00 0.00 42.04 4.17
609 983 5.296035 TCGAAAGAAAGAAGAAGGAAACACC 59.704 40.000 0.00 0.00 37.03 4.16
610 984 6.359480 TCGAAAGAAAGAAGAAGGAAACAC 57.641 37.500 0.00 0.00 37.03 3.32
635 1009 1.153208 GCTCTCCTGACCTGCATGG 60.153 63.158 0.00 0.00 42.93 3.66
636 1010 0.462225 CAGCTCTCCTGACCTGCATG 60.462 60.000 0.00 0.00 44.64 4.06
637 1011 1.906253 CAGCTCTCCTGACCTGCAT 59.094 57.895 0.00 0.00 44.64 3.96
638 1012 2.952293 GCAGCTCTCCTGACCTGCA 61.952 63.158 6.60 0.00 46.04 4.41
639 1013 2.125188 GCAGCTCTCCTGACCTGC 60.125 66.667 0.00 0.00 44.64 4.85
640 1014 0.462225 CATGCAGCTCTCCTGACCTG 60.462 60.000 0.00 0.00 44.64 4.00
641 1015 0.908656 ACATGCAGCTCTCCTGACCT 60.909 55.000 0.00 0.00 44.64 3.85
800 1252 5.292834 CACAGTTATCATCTTGTGGCACTAG 59.707 44.000 20.82 20.82 0.00 2.57
824 1276 1.862827 ACGACGGCACTACAGAAAAAC 59.137 47.619 0.00 0.00 0.00 2.43
843 1349 5.471456 ACAGTTGAGACATGGAAAAGATGAC 59.529 40.000 0.00 0.00 0.00 3.06
931 1437 0.397941 TCTGCAAACCTCAGGTCAGG 59.602 55.000 10.44 0.00 39.80 3.86
933 1439 0.397941 CCTCTGCAAACCTCAGGTCA 59.602 55.000 0.00 0.00 33.12 4.02
934 1440 0.322008 CCCTCTGCAAACCTCAGGTC 60.322 60.000 0.00 0.00 33.12 3.85
935 1441 0.768221 TCCCTCTGCAAACCTCAGGT 60.768 55.000 0.00 0.00 37.65 4.00
936 1442 0.035630 CTCCCTCTGCAAACCTCAGG 60.036 60.000 0.00 0.00 32.63 3.86
937 1443 0.035630 CCTCCCTCTGCAAACCTCAG 60.036 60.000 0.00 0.00 0.00 3.35
938 1444 0.768221 ACCTCCCTCTGCAAACCTCA 60.768 55.000 0.00 0.00 0.00 3.86
939 1445 0.402121 AACCTCCCTCTGCAAACCTC 59.598 55.000 0.00 0.00 0.00 3.85
940 1446 0.853530 AAACCTCCCTCTGCAAACCT 59.146 50.000 0.00 0.00 0.00 3.50
941 1447 1.248486 GAAACCTCCCTCTGCAAACC 58.752 55.000 0.00 0.00 0.00 3.27
942 1448 1.248486 GGAAACCTCCCTCTGCAAAC 58.752 55.000 0.00 0.00 35.42 2.93
943 1449 0.850100 TGGAAACCTCCCTCTGCAAA 59.150 50.000 0.00 0.00 41.64 3.68
944 1450 0.401738 CTGGAAACCTCCCTCTGCAA 59.598 55.000 0.00 0.00 41.64 4.08
945 1451 0.473694 TCTGGAAACCTCCCTCTGCA 60.474 55.000 0.00 0.00 41.64 4.41
946 1452 0.251634 CTCTGGAAACCTCCCTCTGC 59.748 60.000 0.00 0.00 41.64 4.26
947 1453 0.908198 CCTCTGGAAACCTCCCTCTG 59.092 60.000 0.00 0.00 41.64 3.35
948 1454 0.912006 GCCTCTGGAAACCTCCCTCT 60.912 60.000 0.00 0.00 41.64 3.69
949 1455 1.201429 TGCCTCTGGAAACCTCCCTC 61.201 60.000 0.00 0.00 41.64 4.30
950 1456 1.151810 TGCCTCTGGAAACCTCCCT 60.152 57.895 0.00 0.00 41.64 4.20
951 1457 1.201429 TCTGCCTCTGGAAACCTCCC 61.201 60.000 0.00 0.00 41.64 4.30
952 1458 0.251634 CTCTGCCTCTGGAAACCTCC 59.748 60.000 0.00 0.00 42.81 4.30
967 1473 2.061790 GCCTGCCTTATCCCCCTCTG 62.062 65.000 0.00 0.00 0.00 3.35
1191 1701 6.825721 AGGAGCATGACAAGGTTAAATTAGAG 59.174 38.462 0.00 0.00 0.00 2.43
1192 1702 6.721318 AGGAGCATGACAAGGTTAAATTAGA 58.279 36.000 0.00 0.00 0.00 2.10
1193 1703 6.599244 TGAGGAGCATGACAAGGTTAAATTAG 59.401 38.462 0.00 0.00 0.00 1.73
1194 1704 6.480763 TGAGGAGCATGACAAGGTTAAATTA 58.519 36.000 0.00 0.00 0.00 1.40
1196 1706 4.922206 TGAGGAGCATGACAAGGTTAAAT 58.078 39.130 0.00 0.00 0.00 1.40
1232 1743 8.562892 CAGTGGATATGAAATATGACCAGAAAC 58.437 37.037 0.00 0.00 40.26 2.78
1363 2037 4.215185 TGCTTAATCAACTTCATCGTTGCA 59.785 37.500 0.00 0.00 42.98 4.08
1376 2050 5.716228 AGACAACATTGGGATGCTTAATCAA 59.284 36.000 0.00 0.00 36.98 2.57
1400 2074 3.951680 TCTTGAGATACCTCGTGTATGCA 59.048 43.478 5.33 0.00 40.31 3.96
1422 2096 8.792633 TCGAAAACAAGATAGAAATGGTGATTT 58.207 29.630 0.00 0.00 34.29 2.17
1427 2101 6.375455 AGCATCGAAAACAAGATAGAAATGGT 59.625 34.615 0.00 0.00 0.00 3.55
1482 2159 0.254178 GACCCCAGACATGATGCACT 59.746 55.000 0.00 0.00 0.00 4.40
1494 2171 0.258484 TATTGTGGCATGGACCCCAG 59.742 55.000 0.00 0.00 36.75 4.45
1495 2172 0.033601 GTATTGTGGCATGGACCCCA 60.034 55.000 0.00 0.00 38.19 4.96
1496 2173 0.258774 AGTATTGTGGCATGGACCCC 59.741 55.000 0.00 0.00 0.00 4.95
1498 2175 3.118408 TGAGTAGTATTGTGGCATGGACC 60.118 47.826 0.00 0.00 0.00 4.46
1499 2176 4.137116 TGAGTAGTATTGTGGCATGGAC 57.863 45.455 0.00 0.00 0.00 4.02
1530 2219 1.135721 GGTGCATGATTGGAAAGAGGC 59.864 52.381 0.00 0.00 0.00 4.70
1572 2261 6.257411 TGTCAAATAATTGCGCCCAATATTTG 59.743 34.615 24.22 24.22 40.69 2.32
1582 2271 2.840176 CAGACGTGTCAAATAATTGCGC 59.160 45.455 0.00 0.00 36.45 6.09
1598 2287 4.572389 CCCCTGATGAGATTAAAACAGACG 59.428 45.833 0.00 0.00 0.00 4.18
1611 2300 3.634397 TTAGCAGTTTCCCCTGATGAG 57.366 47.619 0.00 0.00 34.23 2.90
1651 2340 6.656693 TCACCTGGAAAATTGAAGAGAAGATC 59.343 38.462 0.00 0.00 0.00 2.75
1654 2343 6.618811 CATCACCTGGAAAATTGAAGAGAAG 58.381 40.000 0.00 0.00 0.00 2.85
1690 2379 7.492669 ACGTATTCCAGAACAATGTAGATCTTG 59.507 37.037 0.00 0.00 0.00 3.02
1693 2382 6.978659 TGACGTATTCCAGAACAATGTAGATC 59.021 38.462 0.00 0.00 0.00 2.75
1723 2412 1.221466 TTGTGTCAAAGAGCTCGCCG 61.221 55.000 8.37 0.18 0.00 6.46
1751 2440 4.943705 AGGAAACATAGGTTGTAGCACATG 59.056 41.667 0.00 0.00 37.68 3.21
1810 2499 2.866156 CGGTATGCTGTAATCCTGTGTG 59.134 50.000 0.00 0.00 0.00 3.82
1824 2513 4.331717 AGCACATAACTAACAACGGTATGC 59.668 41.667 0.00 0.00 35.88 3.14
1923 2614 5.643379 AATCAACCGCATTAATCAACTGT 57.357 34.783 0.00 0.00 0.00 3.55
2015 2706 3.758554 AGTACATTTGGCATTGACAGGAC 59.241 43.478 5.10 0.00 0.00 3.85
2204 2898 8.958119 TGTTAATACAGAAAAGTGTGAACTCT 57.042 30.769 0.00 0.00 31.46 3.24
2227 2921 8.585471 AACATCAAAGGAACATGATTATCTGT 57.415 30.769 0.00 0.00 35.49 3.41
2305 2999 7.578310 AATCCATCATCCTGAACAACAATAG 57.422 36.000 0.00 0.00 0.00 1.73
2324 3018 0.973632 AGGTCGTGTGCAGTAATCCA 59.026 50.000 0.00 0.00 0.00 3.41
2342 3036 1.745087 ACATAATTTGGAGTGCCGCAG 59.255 47.619 0.00 0.00 36.79 5.18
2345 3039 2.094803 TGCAACATAATTTGGAGTGCCG 60.095 45.455 0.00 0.00 36.79 5.69
2369 3063 9.841880 GTTCTACAAATTTCTGAAATTACCTCC 57.158 33.333 24.18 9.34 40.05 4.30
2395 3089 2.403252 AGAACTATTGGCGGTTCAGG 57.597 50.000 12.37 0.00 42.76 3.86
2402 3096 8.184192 AGAAATTAATGTCAAGAACTATTGGCG 58.816 33.333 8.36 0.00 37.61 5.69
2607 3301 9.494479 GTAACAGTAAACCAAAAGAAGTACAAC 57.506 33.333 0.00 0.00 0.00 3.32
2611 3305 8.891671 ATCGTAACAGTAAACCAAAAGAAGTA 57.108 30.769 0.00 0.00 0.00 2.24
2669 3363 6.429078 TGCATCTGATATCTGCAAGGAATAAC 59.571 38.462 13.94 0.00 42.53 1.89
2769 3463 4.421948 CTCTTGTGTTCTACCATACCGTC 58.578 47.826 0.00 0.00 0.00 4.79
2831 3525 1.406539 CAACCCTACTGGATGCATTGC 59.593 52.381 0.00 0.46 38.00 3.56
2877 3571 7.882271 AGAACTTGGAATATTGATAGGCTGATC 59.118 37.037 0.00 0.00 0.00 2.92
2949 3643 4.457257 GGAGCAAGATGTGGGATTATTAGC 59.543 45.833 0.00 0.00 0.00 3.09
3101 3796 2.014335 TGAAGACAGCATCCACATCG 57.986 50.000 0.00 0.00 0.00 3.84
3224 3919 4.455606 CTGAAGGAAGTCAAACCAGAGTT 58.544 43.478 0.00 0.00 38.03 3.01
3243 3938 2.256306 TCTGTTACATGGTGCTCCTGA 58.744 47.619 6.34 0.00 34.23 3.86
3327 4022 9.884636 TCAGAGTCGAATAAATTTCCAAGATTA 57.115 29.630 0.00 0.00 0.00 1.75
3357 4052 8.092687 ACGTTGTTATTAGGATGTTGTCTTACT 58.907 33.333 0.00 0.00 0.00 2.24
3377 4072 7.140048 TCGCAATTTCCTAAATTTTACGTTGT 58.860 30.769 0.00 0.00 38.97 3.32
3382 4077 6.627274 CGCATCGCAATTTCCTAAATTTTAC 58.373 36.000 0.00 0.00 38.97 2.01
3504 4225 9.971922 ATATAAATTTAACTGCTGGCTTTCATC 57.028 29.630 1.21 0.00 0.00 2.92
3759 4482 5.691754 GTGGCAGACCTTGTAATTTTTCTTG 59.308 40.000 0.00 0.00 36.63 3.02
3802 4525 3.689649 AGGAAAATAATCGTGTGGACAGC 59.310 43.478 0.00 0.00 0.00 4.40
3804 4527 7.747155 TTTAAGGAAAATAATCGTGTGGACA 57.253 32.000 0.00 0.00 0.00 4.02
3870 4595 2.629617 AGCTGATCAAACAAACAAGGGG 59.370 45.455 0.00 0.00 0.00 4.79
3876 4615 5.928839 TCTAGTCTCAGCTGATCAAACAAAC 59.071 40.000 18.63 5.82 0.00 2.93
3901 4640 3.759086 CCTTCCTTCCTGCTTTTACCTTC 59.241 47.826 0.00 0.00 0.00 3.46
3928 4667 1.623811 ACCTCGGTAGCAACATTGAGT 59.376 47.619 0.00 0.00 0.00 3.41
3952 4691 4.471904 TTCAGTTCAGCATATTCTCCGT 57.528 40.909 0.00 0.00 0.00 4.69
3981 4720 9.668497 AAAGTTAGACTGAAGAAGTTAACTTGT 57.332 29.630 25.17 18.55 43.10 3.16
4124 4864 4.137543 GTTGACAGACTCCACTTCCAAAT 58.862 43.478 0.00 0.00 0.00 2.32
4134 4874 2.029470 CACCTCTCAGTTGACAGACTCC 60.029 54.545 0.00 0.00 0.00 3.85
4160 4900 2.909006 TGAGGTCAGAGAAGCAGGAATT 59.091 45.455 0.00 0.00 0.00 2.17
4174 4914 3.017442 CGAGTCCAGATTACTGAGGTCA 58.983 50.000 0.00 0.00 46.03 4.02
4199 4939 3.487879 CGCAATTTACAATCCCGGTAACC 60.488 47.826 0.00 0.00 30.91 2.85
4220 4960 1.165270 AGGCGAAAAAGGATCAACCG 58.835 50.000 0.00 0.00 44.74 4.44
4272 5013 6.597672 TGTAGAACTGCACCACAATATTAAGG 59.402 38.462 4.28 4.28 0.00 2.69
4276 5017 6.237901 TCTTGTAGAACTGCACCACAATATT 58.762 36.000 0.00 0.00 0.00 1.28
4329 5070 3.384789 TCTGAAGATCGTCGGATTTCCAT 59.615 43.478 15.23 0.00 35.14 3.41
4387 5128 5.876357 TGGGATGCTAATAGTTTACCCATC 58.124 41.667 0.00 4.50 40.72 3.51
4479 5221 0.912486 GACAACAGGGCTATCCACCT 59.088 55.000 0.00 0.00 38.24 4.00
4502 5244 2.047844 CAGTGGAGGACAGGCACG 60.048 66.667 0.00 0.00 0.00 5.34
4507 5249 0.469917 ACAACACCAGTGGAGGACAG 59.530 55.000 18.40 2.91 34.19 3.51
4550 5292 5.034797 GTGCTTGACTTAAACTGTTCCAAC 58.965 41.667 0.00 0.00 0.00 3.77
4615 5357 3.402628 AGTGAACTTGATACGGCTTGT 57.597 42.857 0.00 0.00 0.00 3.16
4620 5362 4.513692 TGTTCCAAAGTGAACTTGATACGG 59.486 41.667 0.00 0.00 43.96 4.02
4627 5369 4.869861 GCATTGTTGTTCCAAAGTGAACTT 59.130 37.500 5.61 0.00 43.96 2.66
4640 5382 4.557296 CGAGTTCCTGATTGCATTGTTGTT 60.557 41.667 0.00 0.00 0.00 2.83
4641 5383 3.058016 CGAGTTCCTGATTGCATTGTTGT 60.058 43.478 0.00 0.00 0.00 3.32
4642 5384 3.495193 CGAGTTCCTGATTGCATTGTTG 58.505 45.455 0.00 0.00 0.00 3.33
4660 5402 2.892373 TTCGGCTAAATGTTTGCGAG 57.108 45.000 0.00 0.00 0.00 5.03
4743 5489 8.560355 ACAAGGCAAAAACAAGAAATTAACTT 57.440 26.923 0.00 0.00 0.00 2.66
4772 5519 3.467803 ACAGCTGAAGGAACAAGTGTAC 58.532 45.455 23.35 0.00 0.00 2.90
4920 5667 3.066064 CGTGAGATGGTACCAGAGAAGAG 59.934 52.174 21.41 5.24 0.00 2.85
4929 5676 3.314541 AAACAGTCGTGAGATGGTACC 57.685 47.619 4.43 4.43 45.19 3.34
4930 5677 3.120649 GCAAAACAGTCGTGAGATGGTAC 60.121 47.826 0.00 0.00 45.19 3.34
4943 5726 1.670811 CGGAAGTCACAGCAAAACAGT 59.329 47.619 0.00 0.00 0.00 3.55
4951 5734 3.112709 GACGGCGGAAGTCACAGC 61.113 66.667 13.24 0.00 38.42 4.40
5009 5792 5.555966 TGTGCTAGAATGGTATGTGTTTCA 58.444 37.500 0.00 0.00 0.00 2.69
5011 5794 5.560724 ACTGTGCTAGAATGGTATGTGTTT 58.439 37.500 0.00 0.00 0.00 2.83
5020 5807 4.038162 GGGAGTACTACTGTGCTAGAATGG 59.962 50.000 4.77 0.00 39.21 3.16
5029 5816 2.015587 GACGGAGGGAGTACTACTGTG 58.984 57.143 4.77 0.16 0.00 3.66
5030 5817 1.914798 AGACGGAGGGAGTACTACTGT 59.085 52.381 4.77 4.26 0.00 3.55
5031 5818 2.290464 CAGACGGAGGGAGTACTACTG 58.710 57.143 4.77 1.08 0.00 2.74
5032 5819 1.212441 CCAGACGGAGGGAGTACTACT 59.788 57.143 4.77 1.85 0.00 2.57
5033 5820 1.211457 TCCAGACGGAGGGAGTACTAC 59.789 57.143 0.00 0.00 35.91 2.73
5034 5821 1.588239 TCCAGACGGAGGGAGTACTA 58.412 55.000 0.00 0.00 35.91 1.82
5035 5822 0.702902 TTCCAGACGGAGGGAGTACT 59.297 55.000 0.00 0.00 44.10 2.73
5036 5823 1.553706 TTTCCAGACGGAGGGAGTAC 58.446 55.000 0.00 0.00 44.10 2.73
5037 5824 2.544844 ATTTCCAGACGGAGGGAGTA 57.455 50.000 0.00 0.00 44.10 2.59
5038 5825 2.108970 GTATTTCCAGACGGAGGGAGT 58.891 52.381 0.00 0.00 44.10 3.85
5039 5826 2.389715 AGTATTTCCAGACGGAGGGAG 58.610 52.381 0.00 0.00 44.10 4.30
5040 5827 2.500098 CAAGTATTTCCAGACGGAGGGA 59.500 50.000 0.00 0.00 44.10 4.20
5041 5828 2.236395 ACAAGTATTTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
5042 5829 3.056107 TGACAAGTATTTCCAGACGGAGG 60.056 47.826 0.00 0.00 44.10 4.30
5043 5830 4.188247 TGACAAGTATTTCCAGACGGAG 57.812 45.455 0.00 0.00 44.10 4.63
5044 5831 4.221924 TGATGACAAGTATTTCCAGACGGA 59.778 41.667 0.00 0.00 40.60 4.69
5045 5832 4.503910 TGATGACAAGTATTTCCAGACGG 58.496 43.478 0.00 0.00 0.00 4.79
5046 5833 6.480524 TTTGATGACAAGTATTTCCAGACG 57.519 37.500 0.00 0.00 37.32 4.18
5047 5834 7.756722 CCATTTTGATGACAAGTATTTCCAGAC 59.243 37.037 0.00 0.00 37.32 3.51
5048 5835 7.669304 TCCATTTTGATGACAAGTATTTCCAGA 59.331 33.333 0.00 0.00 37.32 3.86
5049 5836 7.829725 TCCATTTTGATGACAAGTATTTCCAG 58.170 34.615 0.00 0.00 37.32 3.86
5050 5837 7.773489 TCCATTTTGATGACAAGTATTTCCA 57.227 32.000 0.00 0.00 37.32 3.53
5051 5838 8.469200 TCATCCATTTTGATGACAAGTATTTCC 58.531 33.333 0.00 0.00 44.65 3.13
5063 5850 9.772973 ATACATCCATTTTCATCCATTTTGATG 57.227 29.630 0.00 0.00 42.84 3.07
5064 5851 9.991906 GATACATCCATTTTCATCCATTTTGAT 57.008 29.630 0.00 0.00 0.00 2.57
5065 5852 9.204337 AGATACATCCATTTTCATCCATTTTGA 57.796 29.630 0.00 0.00 0.00 2.69
5070 5857 9.512588 GTTCTAGATACATCCATTTTCATCCAT 57.487 33.333 0.00 0.00 0.00 3.41
5071 5858 8.717717 AGTTCTAGATACATCCATTTTCATCCA 58.282 33.333 0.00 0.00 0.00 3.41
5103 5890 9.499479 GTCATTGAAATGGATGTATCTAGATGT 57.501 33.333 15.79 1.25 37.03 3.06
5104 5891 9.498176 TGTCATTGAAATGGATGTATCTAGATG 57.502 33.333 15.79 0.00 37.03 2.90
5106 5893 9.551734 CTTGTCATTGAAATGGATGTATCTAGA 57.448 33.333 0.00 0.00 37.03 2.43
5107 5894 9.334947 ACTTGTCATTGAAATGGATGTATCTAG 57.665 33.333 3.31 0.00 37.03 2.43
5109 5896 9.857656 ATACTTGTCATTGAAATGGATGTATCT 57.142 29.630 3.31 0.00 37.03 1.98
5113 5900 8.253113 GGAAATACTTGTCATTGAAATGGATGT 58.747 33.333 3.31 2.77 37.03 3.06
5114 5901 7.433131 CGGAAATACTTGTCATTGAAATGGATG 59.567 37.037 3.31 0.00 37.03 3.51
5115 5902 7.416664 CCGGAAATACTTGTCATTGAAATGGAT 60.417 37.037 0.00 0.00 37.03 3.41
5116 5903 6.127758 CCGGAAATACTTGTCATTGAAATGGA 60.128 38.462 0.00 0.00 37.03 3.41
5117 5904 6.035843 CCGGAAATACTTGTCATTGAAATGG 58.964 40.000 0.00 0.00 37.03 3.16
5118 5905 6.747280 GTCCGGAAATACTTGTCATTGAAATG 59.253 38.462 5.23 0.00 37.75 2.32
5119 5906 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
5120 5907 5.106869 CGTCCGGAAATACTTGTCATTGAAA 60.107 40.000 5.23 0.00 0.00 2.69
5121 5908 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
5122 5909 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
5123 5910 3.063452 CCGTCCGGAAATACTTGTCATTG 59.937 47.826 5.23 0.00 37.50 2.82
5124 5911 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
5125 5912 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
5126 5913 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
5127 5914 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5128 5915 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5129 5916 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5130 5917 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
5131 5918 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
5132 5919 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
5133 5920 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5134 5921 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5135 5922 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
5136 5923 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
5137 5924 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
5138 5925 0.539901 ATGATACTCCCTCCGTCCGG 60.540 60.000 0.00 0.00 0.00 5.14
5139 5926 2.195741 TATGATACTCCCTCCGTCCG 57.804 55.000 0.00 0.00 0.00 4.79
5140 5927 5.892119 TCAATATATGATACTCCCTCCGTCC 59.108 44.000 0.00 0.00 31.50 4.79
5162 5949 2.291365 CGATGAGCATGAACCCAATCA 58.709 47.619 0.00 0.00 0.00 2.57
5163 5950 2.032550 CACGATGAGCATGAACCCAATC 59.967 50.000 0.00 0.00 0.00 2.67
5207 5994 7.061789 GCATCTTTAACCGAAATCACGATTTTT 59.938 33.333 6.47 0.90 40.77 1.94
5208 5995 6.526674 GCATCTTTAACCGAAATCACGATTTT 59.473 34.615 6.47 0.00 40.77 1.82
5209 5996 6.027749 GCATCTTTAACCGAAATCACGATTT 58.972 36.000 4.71 4.71 43.14 2.17
5210 5997 5.354234 AGCATCTTTAACCGAAATCACGATT 59.646 36.000 0.00 0.00 35.09 3.34
5211 5998 4.876107 AGCATCTTTAACCGAAATCACGAT 59.124 37.500 0.00 0.00 35.09 3.73
5212 5999 4.092821 CAGCATCTTTAACCGAAATCACGA 59.907 41.667 0.00 0.00 35.09 4.35
5213 6000 4.334443 CAGCATCTTTAACCGAAATCACG 58.666 43.478 0.00 0.00 0.00 4.35
5214 6001 4.098416 GCAGCATCTTTAACCGAAATCAC 58.902 43.478 0.00 0.00 0.00 3.06
5215 6002 3.128589 GGCAGCATCTTTAACCGAAATCA 59.871 43.478 0.00 0.00 0.00 2.57
5216 6003 3.378427 AGGCAGCATCTTTAACCGAAATC 59.622 43.478 0.00 0.00 0.00 2.17
5217 6004 3.356290 AGGCAGCATCTTTAACCGAAAT 58.644 40.909 0.00 0.00 0.00 2.17
5247 6034 1.888512 TCTCCCATCTTTTGCACTTGC 59.111 47.619 0.00 0.00 42.50 4.01
5248 6035 4.279169 TCTTTCTCCCATCTTTTGCACTTG 59.721 41.667 0.00 0.00 0.00 3.16
5249 6036 4.473444 TCTTTCTCCCATCTTTTGCACTT 58.527 39.130 0.00 0.00 0.00 3.16
5250 6037 4.104383 TCTTTCTCCCATCTTTTGCACT 57.896 40.909 0.00 0.00 0.00 4.40
5251 6038 4.460382 TCATCTTTCTCCCATCTTTTGCAC 59.540 41.667 0.00 0.00 0.00 4.57
5252 6039 4.665451 TCATCTTTCTCCCATCTTTTGCA 58.335 39.130 0.00 0.00 0.00 4.08
5262 6049 5.565637 GCAAAACCTTCTTCATCTTTCTCCC 60.566 44.000 0.00 0.00 0.00 4.30
5337 8341 0.251832 ATGGAGATCGGCCGGAGTAT 60.252 55.000 27.83 11.69 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.