Multiple sequence alignment - TraesCS4B01G130800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G130800 chr4B 100.000 6327 0 0 695 7021 171150059 171143733 0.000000e+00 11684
1 TraesCS4B01G130800 chr4B 100.000 329 0 0 1 329 171150753 171150425 6.020000e-170 608
2 TraesCS4B01G130800 chr4B 97.790 181 2 2 3989 4167 413121185 413121365 1.900000e-80 311
3 TraesCS4B01G130800 chr4B 92.248 129 10 0 8 136 386037571 386037699 4.330000e-42 183
4 TraesCS4B01G130800 chr4B 91.538 130 11 0 7 136 386037269 386037398 5.600000e-41 180
5 TraesCS4B01G130800 chr4D 90.693 2525 176 29 1243 3736 111046527 111049023 0.000000e+00 3306
6 TraesCS4B01G130800 chr4D 93.718 1974 95 13 4170 6124 111049209 111051172 0.000000e+00 2931
7 TraesCS4B01G130800 chr4D 94.438 917 36 7 6118 7021 111052424 111053338 0.000000e+00 1397
8 TraesCS4B01G130800 chr4D 91.075 549 36 7 695 1242 111045884 111046420 0.000000e+00 730
9 TraesCS4B01G130800 chr4D 90.306 196 13 5 134 329 111045506 111045695 1.170000e-62 252
10 TraesCS4B01G130800 chr4D 94.964 139 5 1 1 139 468012869 468013005 4.260000e-52 217
11 TraesCS4B01G130800 chr4A 97.123 1564 41 4 2441 4001 465897088 465895526 0.000000e+00 2636
12 TraesCS4B01G130800 chr4A 90.554 1768 80 29 5282 7021 465894297 465892589 0.000000e+00 2259
13 TraesCS4B01G130800 chr4A 94.307 1212 63 6 1243 2449 465898990 465897780 0.000000e+00 1851
14 TraesCS4B01G130800 chr4A 94.921 1142 36 10 4168 5287 465895541 465894400 0.000000e+00 1768
15 TraesCS4B01G130800 chr4A 96.114 386 15 0 857 1242 465899486 465899101 1.290000e-176 630
16 TraesCS4B01G130800 chr4A 98.876 178 1 1 3996 4172 564649672 564649495 4.090000e-82 316
17 TraesCS4B01G130800 chr4A 99.425 174 0 1 3995 4168 231287649 231287821 1.470000e-81 315
18 TraesCS4B01G130800 chr4A 100.000 136 0 0 1 136 563439636 563439501 1.170000e-62 252
19 TraesCS4B01G130800 chr5D 79.107 1254 214 36 4796 6022 241948702 241949934 0.000000e+00 821
20 TraesCS4B01G130800 chr5D 87.629 388 47 1 4337 4724 241948206 241948592 3.860000e-122 449
21 TraesCS4B01G130800 chr5D 89.617 183 18 1 2582 2764 241946708 241946889 1.520000e-56 231
22 TraesCS4B01G130800 chr5D 86.667 180 21 3 2115 2291 241946032 241946211 5.560000e-46 196
23 TraesCS4B01G130800 chr5D 87.838 148 14 3 1001 1146 241944599 241944744 3.370000e-38 171
24 TraesCS4B01G130800 chr5A 80.374 1070 173 26 4796 5844 311938252 311939305 0.000000e+00 778
25 TraesCS4B01G130800 chr5A 89.326 356 38 0 4356 4711 311937773 311938128 1.390000e-121 448
26 TraesCS4B01G130800 chr5A 83.465 254 26 9 1001 1240 311934715 311934966 9.170000e-54 222
27 TraesCS4B01G130800 chr5A 86.667 180 21 3 2115 2291 311936094 311936273 5.560000e-46 196
28 TraesCS4B01G130800 chr5B 80.074 1074 170 30 4796 5844 256902043 256903097 0.000000e+00 758
29 TraesCS4B01G130800 chr5B 88.618 369 42 0 4356 4724 256901565 256901933 3.860000e-122 449
30 TraesCS4B01G130800 chr5B 98.870 177 0 1 4000 4176 253163023 253163197 1.470000e-81 315
31 TraesCS4B01G130800 chr5B 83.529 255 26 9 1001 1241 256898465 256898717 2.550000e-54 224
32 TraesCS4B01G130800 chr5B 85.556 180 23 3 2115 2291 256899893 256900072 1.200000e-42 185
33 TraesCS4B01G130800 chr1B 99.435 177 0 1 3995 4171 688698475 688698300 3.160000e-83 320
34 TraesCS4B01G130800 chr6B 98.870 177 2 0 3997 4173 460493464 460493640 4.090000e-82 316
35 TraesCS4B01G130800 chr6B 98.870 177 0 2 3996 4172 314575908 314576082 1.470000e-81 315
36 TraesCS4B01G130800 chr1A 98.324 179 3 0 3996 4174 137409901 137410079 1.470000e-81 315
37 TraesCS4B01G130800 chr7A 100.000 168 0 0 4001 4168 426576590 426576423 1.900000e-80 311
38 TraesCS4B01G130800 chr2B 94.161 137 7 1 1 136 25191602 25191738 2.570000e-49 207
39 TraesCS4B01G130800 chrUn 93.382 136 9 0 1 136 274220780 274220645 1.190000e-47 202
40 TraesCS4B01G130800 chrUn 93.382 136 9 0 1 136 274228550 274228415 1.190000e-47 202
41 TraesCS4B01G130800 chrUn 93.382 136 9 0 1 136 291458720 291458855 1.190000e-47 202
42 TraesCS4B01G130800 chrUn 93.382 136 9 0 1 136 295626405 295626270 1.190000e-47 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G130800 chr4B 171143733 171150753 7020 True 6146.0 11684 100.00000 1 7021 2 chr4B.!!$R1 7020
1 TraesCS4B01G130800 chr4D 111045506 111053338 7832 False 1723.2 3306 92.04600 134 7021 5 chr4D.!!$F2 6887
2 TraesCS4B01G130800 chr4A 465892589 465899486 6897 True 1828.8 2636 94.60380 857 7021 5 chr4A.!!$R3 6164
3 TraesCS4B01G130800 chr5D 241944599 241949934 5335 False 373.6 821 86.17160 1001 6022 5 chr5D.!!$F1 5021
4 TraesCS4B01G130800 chr5A 311934715 311939305 4590 False 411.0 778 84.95800 1001 5844 4 chr5A.!!$F1 4843
5 TraesCS4B01G130800 chr5B 256898465 256903097 4632 False 404.0 758 84.44425 1001 5844 4 chr5B.!!$F2 4843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.100682 CTTCGCTTCGGGAATCTCGA 59.899 55.0 0.00 0.0 34.19 4.04 F
101 102 0.109272 CCGACGGGATGGATATCGTG 60.109 60.0 5.81 0.0 35.91 4.35 F
1597 1817 0.251916 CCTAGACGCCACATTTCCCA 59.748 55.0 0.00 0.0 0.00 4.37 F
2257 2671 0.895100 TTGACCAGGCTTGTGATGGC 60.895 55.0 0.00 0.0 37.64 4.40 F
4101 5854 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.0 8.73 0.0 40.08 4.58 F
4107 5860 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.0 0.00 0.0 45.03 3.95 F
5574 7522 0.597377 TTCCCATCATCGTCATCGCG 60.597 55.0 0.00 0.0 36.96 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 1814 0.179129 GCAATTCCAGCGTGAATGGG 60.179 55.000 4.78 2.87 38.44 4.00 R
1677 1897 1.026718 CCAAGAACTCATCACCGGCC 61.027 60.000 0.00 0.00 0.00 6.13 R
3093 4492 5.893255 ACAACAATTATAGGTCATGTGCCAT 59.107 36.000 10.70 5.88 0.00 4.40 R
4127 5880 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16 R
5484 7432 2.037136 GCCTTCGCTGTGCATCAGT 61.037 57.895 14.87 0.00 45.23 3.41 R
5741 7693 2.264480 CCAACGGCGGAGATGTCA 59.736 61.111 13.24 0.00 0.00 3.58 R
6671 9897 0.670854 GCTCACTGGAGGTTCCGTTC 60.671 60.000 0.00 0.00 40.17 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.760799 GCCATGGGCCTTGCATGA 60.761 61.111 18.83 0.00 44.06 3.07
20 21 2.360767 GCCATGGGCCTTGCATGAA 61.361 57.895 18.83 0.00 44.06 2.57
21 22 1.692173 GCCATGGGCCTTGCATGAAT 61.692 55.000 18.83 0.00 44.06 2.57
22 23 1.707106 CCATGGGCCTTGCATGAATA 58.293 50.000 18.83 0.00 0.00 1.75
23 24 2.253610 CCATGGGCCTTGCATGAATAT 58.746 47.619 18.83 0.00 0.00 1.28
24 25 3.433343 CCATGGGCCTTGCATGAATATA 58.567 45.455 18.83 0.00 0.00 0.86
25 26 4.028131 CCATGGGCCTTGCATGAATATAT 58.972 43.478 18.83 0.00 0.00 0.86
26 27 4.142026 CCATGGGCCTTGCATGAATATATG 60.142 45.833 18.83 0.00 0.00 1.78
27 28 4.116782 TGGGCCTTGCATGAATATATGT 57.883 40.909 4.53 0.00 0.00 2.29
28 29 5.253991 TGGGCCTTGCATGAATATATGTA 57.746 39.130 4.53 0.00 0.00 2.29
29 30 5.829986 TGGGCCTTGCATGAATATATGTAT 58.170 37.500 4.53 0.00 0.00 2.29
30 31 6.967897 TGGGCCTTGCATGAATATATGTATA 58.032 36.000 4.53 0.00 0.00 1.47
31 32 6.828273 TGGGCCTTGCATGAATATATGTATAC 59.172 38.462 4.53 0.00 0.00 1.47
32 33 6.263168 GGGCCTTGCATGAATATATGTATACC 59.737 42.308 0.84 0.00 0.00 2.73
33 34 7.056635 GGCCTTGCATGAATATATGTATACCT 58.943 38.462 0.00 0.00 0.00 3.08
34 35 8.210946 GGCCTTGCATGAATATATGTATACCTA 58.789 37.037 0.00 0.00 0.00 3.08
35 36 9.613428 GCCTTGCATGAATATATGTATACCTAA 57.387 33.333 0.00 0.00 0.00 2.69
55 56 3.814005 AGTTATACTTGGGCCTGTACG 57.186 47.619 4.53 0.00 0.00 3.67
56 57 2.159000 AGTTATACTTGGGCCTGTACGC 60.159 50.000 4.53 2.94 0.00 4.42
57 58 1.784358 TATACTTGGGCCTGTACGCT 58.216 50.000 4.53 0.00 0.00 5.07
58 59 0.909623 ATACTTGGGCCTGTACGCTT 59.090 50.000 4.53 0.00 0.00 4.68
59 60 0.248289 TACTTGGGCCTGTACGCTTC 59.752 55.000 4.53 0.00 0.00 3.86
60 61 2.047655 TTGGGCCTGTACGCTTCG 60.048 61.111 4.53 0.00 0.00 3.79
61 62 4.752879 TGGGCCTGTACGCTTCGC 62.753 66.667 4.53 0.00 0.00 4.70
62 63 4.452733 GGGCCTGTACGCTTCGCT 62.453 66.667 0.84 0.00 0.00 4.93
63 64 2.434359 GGCCTGTACGCTTCGCTT 60.434 61.111 0.00 0.00 0.00 4.68
64 65 2.453638 GGCCTGTACGCTTCGCTTC 61.454 63.158 0.00 0.00 0.00 3.86
65 66 2.789203 GCCTGTACGCTTCGCTTCG 61.789 63.158 0.00 0.00 0.00 3.79
66 67 2.158959 CCTGTACGCTTCGCTTCGG 61.159 63.158 0.00 0.00 0.00 4.30
67 68 2.126228 TGTACGCTTCGCTTCGGG 60.126 61.111 0.00 0.00 0.00 5.14
68 69 2.180017 GTACGCTTCGCTTCGGGA 59.820 61.111 0.00 0.00 0.00 5.14
69 70 1.444895 GTACGCTTCGCTTCGGGAA 60.445 57.895 0.00 0.00 33.61 3.97
70 71 0.804933 GTACGCTTCGCTTCGGGAAT 60.805 55.000 0.00 0.00 34.19 3.01
71 72 0.526954 TACGCTTCGCTTCGGGAATC 60.527 55.000 0.00 0.00 34.19 2.52
72 73 1.519455 CGCTTCGCTTCGGGAATCT 60.519 57.895 0.00 0.00 34.19 2.40
73 74 1.483424 CGCTTCGCTTCGGGAATCTC 61.483 60.000 0.00 0.00 34.19 2.75
74 75 1.483424 GCTTCGCTTCGGGAATCTCG 61.483 60.000 0.00 0.00 34.19 4.04
75 76 0.100682 CTTCGCTTCGGGAATCTCGA 59.899 55.000 0.00 0.00 34.19 4.04
76 77 0.744874 TTCGCTTCGGGAATCTCGAT 59.255 50.000 5.89 0.00 36.49 3.59
77 78 1.601166 TCGCTTCGGGAATCTCGATA 58.399 50.000 5.89 0.00 36.49 2.92
78 79 1.535896 TCGCTTCGGGAATCTCGATAG 59.464 52.381 5.89 8.09 36.49 2.08
79 80 1.401670 CGCTTCGGGAATCTCGATAGG 60.402 57.143 5.89 1.17 36.49 2.57
80 81 1.067495 GCTTCGGGAATCTCGATAGGG 60.067 57.143 5.89 0.00 36.49 3.53
87 88 4.451241 TCTCGATAGGGACCGACG 57.549 61.111 0.00 0.00 43.84 5.12
88 89 1.227764 TCTCGATAGGGACCGACGG 60.228 63.158 13.61 13.61 43.84 4.79
89 90 2.203252 TCGATAGGGACCGACGGG 60.203 66.667 20.00 0.00 40.11 5.28
90 91 2.203252 CGATAGGGACCGACGGGA 60.203 66.667 20.00 0.00 36.97 5.14
91 92 1.602888 CGATAGGGACCGACGGGAT 60.603 63.158 20.00 0.00 36.97 3.85
92 93 1.863662 CGATAGGGACCGACGGGATG 61.864 65.000 20.00 0.00 36.97 3.51
93 94 1.533273 ATAGGGACCGACGGGATGG 60.533 63.158 20.00 0.00 36.97 3.51
94 95 2.015243 ATAGGGACCGACGGGATGGA 62.015 60.000 20.00 0.26 36.97 3.41
95 96 2.015243 TAGGGACCGACGGGATGGAT 62.015 60.000 20.00 0.00 36.97 3.41
96 97 1.532316 GGGACCGACGGGATGGATA 60.532 63.158 20.00 0.00 36.97 2.59
97 98 0.903454 GGGACCGACGGGATGGATAT 60.903 60.000 20.00 0.00 36.97 1.63
98 99 0.531200 GGACCGACGGGATGGATATC 59.469 60.000 20.00 3.47 36.97 1.63
99 100 0.170561 GACCGACGGGATGGATATCG 59.829 60.000 20.00 0.00 36.97 2.92
100 101 0.538977 ACCGACGGGATGGATATCGT 60.539 55.000 20.00 0.00 38.62 3.73
101 102 0.109272 CCGACGGGATGGATATCGTG 60.109 60.000 5.81 0.00 35.91 4.35
102 103 0.732880 CGACGGGATGGATATCGTGC 60.733 60.000 0.00 0.00 35.91 5.34
103 104 0.732880 GACGGGATGGATATCGTGCG 60.733 60.000 0.00 0.00 35.91 5.34
104 105 2.094659 CGGGATGGATATCGTGCGC 61.095 63.158 0.00 0.00 33.98 6.09
105 106 1.005037 GGGATGGATATCGTGCGCA 60.005 57.895 5.66 5.66 33.98 6.09
106 107 1.291877 GGGATGGATATCGTGCGCAC 61.292 60.000 30.42 30.42 33.98 5.34
107 108 1.291877 GGATGGATATCGTGCGCACC 61.292 60.000 33.23 19.56 33.98 5.01
108 109 0.319900 GATGGATATCGTGCGCACCT 60.320 55.000 33.23 22.98 0.00 4.00
109 110 0.601046 ATGGATATCGTGCGCACCTG 60.601 55.000 33.23 20.99 0.00 4.00
110 111 1.227263 GGATATCGTGCGCACCTGT 60.227 57.895 33.23 21.22 0.00 4.00
111 112 1.490693 GGATATCGTGCGCACCTGTG 61.491 60.000 33.23 19.88 0.00 3.66
129 130 3.295734 GCTCGAGCATAGAATGGCA 57.704 52.632 31.91 0.00 41.59 4.92
130 131 0.864455 GCTCGAGCATAGAATGGCAC 59.136 55.000 31.91 0.00 41.59 5.01
131 132 1.539929 GCTCGAGCATAGAATGGCACT 60.540 52.381 31.91 0.00 41.59 4.40
132 133 2.831333 CTCGAGCATAGAATGGCACTT 58.169 47.619 0.00 0.00 0.00 3.16
133 134 3.201290 CTCGAGCATAGAATGGCACTTT 58.799 45.455 0.00 0.00 0.00 2.66
134 135 3.198068 TCGAGCATAGAATGGCACTTTC 58.802 45.455 0.00 0.00 0.00 2.62
135 136 2.033407 CGAGCATAGAATGGCACTTTCG 60.033 50.000 0.00 0.00 0.00 3.46
136 137 2.939103 GAGCATAGAATGGCACTTTCGT 59.061 45.455 0.00 0.00 0.00 3.85
137 138 2.679837 AGCATAGAATGGCACTTTCGTG 59.320 45.455 0.00 0.00 44.07 4.35
181 182 8.400947 CACAATTATACTTGGTTCAGGAATCTG 58.599 37.037 7.63 0.00 42.21 2.90
251 252 3.561217 TACGCGCCGACTTGAAGCA 62.561 57.895 5.73 0.00 0.00 3.91
253 254 2.738521 GCGCCGACTTGAAGCAGA 60.739 61.111 0.00 0.00 0.00 4.26
744 746 4.826733 TGTGTGGCAAACTCTTATGTGATT 59.173 37.500 9.62 0.00 0.00 2.57
747 749 3.689161 TGGCAAACTCTTATGTGATTCGG 59.311 43.478 0.00 0.00 0.00 4.30
752 754 5.741388 AACTCTTATGTGATTCGGATTGC 57.259 39.130 0.00 0.00 0.00 3.56
758 760 2.291365 TGTGATTCGGATTGCTGGATG 58.709 47.619 0.00 0.00 0.00 3.51
759 761 2.292267 GTGATTCGGATTGCTGGATGT 58.708 47.619 0.00 0.00 0.00 3.06
760 762 2.032550 GTGATTCGGATTGCTGGATGTG 59.967 50.000 0.00 0.00 0.00 3.21
767 769 3.879295 CGGATTGCTGGATGTGATTAGTT 59.121 43.478 0.00 0.00 0.00 2.24
772 774 3.199727 TGCTGGATGTGATTAGTTGGCTA 59.800 43.478 0.00 0.00 0.00 3.93
780 782 7.256332 GGATGTGATTAGTTGGCTAGATAGGAA 60.256 40.741 0.00 0.00 0.00 3.36
799 801 3.067320 GGAAGCCTTTGATAATCCTGTGC 59.933 47.826 0.00 0.00 0.00 4.57
802 804 2.754552 GCCTTTGATAATCCTGTGCACA 59.245 45.455 20.37 20.37 0.00 4.57
848 850 6.866179 AACTTAAGTTTGCTCGTATAGTCG 57.134 37.500 15.22 0.00 33.93 4.18
849 851 6.187125 ACTTAAGTTTGCTCGTATAGTCGA 57.813 37.500 1.12 0.00 38.19 4.20
850 852 6.746364 AACTTAAGTTTGCTCGTATAGTCGAG 59.254 38.462 15.22 11.02 45.83 4.04
851 853 7.574592 AACTTAAGTTTGCTCGTATAGTCGAGT 60.575 37.037 15.22 0.00 45.37 4.18
886 888 6.033196 CGTATTCGACAAGAAAAGACGTACAT 59.967 38.462 0.00 0.00 42.91 2.29
890 892 5.051307 TCGACAAGAAAAGACGTACATTGTG 60.051 40.000 0.00 0.00 30.10 3.33
917 919 2.431782 ACCTAAAATACGCCGCCTTCTA 59.568 45.455 0.00 0.00 0.00 2.10
938 940 2.100197 CTGTATCCTCCACCTCGAACA 58.900 52.381 0.00 0.00 0.00 3.18
975 977 3.121030 CACGCGGCCTTCCAGAAG 61.121 66.667 12.47 0.15 38.14 2.85
989 991 3.100671 TCCAGAAGCTTCTAGAAGACCC 58.899 50.000 32.16 19.49 40.79 4.46
1279 1424 1.535437 GGATCGTGGATGTCGTGTACC 60.535 57.143 0.00 0.00 0.00 3.34
1334 1480 3.243907 GCATAATTCTGGAGCCTCGTAGT 60.244 47.826 0.00 0.00 0.00 2.73
1369 1515 7.931948 AGATTAAACCGGTTGGATGAAGTATAG 59.068 37.037 23.08 0.00 39.21 1.31
1392 1538 2.143925 GTTTATCAGGCCATACCGCTC 58.856 52.381 5.01 0.00 46.52 5.03
1433 1580 4.007659 TCGTCCCTTAAATTCCTTGCTTC 58.992 43.478 0.00 0.00 0.00 3.86
1438 1586 5.243730 TCCCTTAAATTCCTTGCTTCTGTTG 59.756 40.000 0.00 0.00 0.00 3.33
1478 1683 2.423446 ATGCATTTTCCCCATTTGCC 57.577 45.000 0.00 0.00 32.39 4.52
1484 1689 1.055040 TTTCCCCATTTGCCTTGGTG 58.945 50.000 0.00 0.00 31.99 4.17
1485 1690 0.835543 TTCCCCATTTGCCTTGGTGG 60.836 55.000 0.00 0.00 39.35 4.61
1490 1695 2.422661 CCCATTTGCCTTGGTGGTTTTT 60.423 45.455 0.00 0.00 38.35 1.94
1549 1755 1.021968 AAGGTTGTTTGGCGTCTGAC 58.978 50.000 0.00 0.00 0.00 3.51
1581 1801 3.516586 TGATGAGAAGGGTGTGAACCTA 58.483 45.455 0.00 0.00 37.35 3.08
1584 1804 2.897969 TGAGAAGGGTGTGAACCTAGAC 59.102 50.000 0.00 0.00 37.35 2.59
1594 1814 2.415512 GTGAACCTAGACGCCACATTTC 59.584 50.000 0.00 0.00 0.00 2.17
1597 1817 0.251916 CCTAGACGCCACATTTCCCA 59.748 55.000 0.00 0.00 0.00 4.37
1856 2164 6.406692 TGCCAGTGGAGACTATAATAAGTC 57.593 41.667 15.20 0.00 45.20 3.01
1872 2180 2.086054 AGTCGCTCCTTGTGCTAAAG 57.914 50.000 0.00 0.00 0.00 1.85
1984 2293 1.067250 CTTGGTGGGGTTGTTTGCG 59.933 57.895 0.00 0.00 0.00 4.85
2005 2362 3.181518 CGCCATATTGCAAAAGCTTTTGG 60.182 43.478 39.11 28.18 45.73 3.28
2257 2671 0.895100 TTGACCAGGCTTGTGATGGC 60.895 55.000 0.00 0.00 37.64 4.40
2341 2756 4.818546 CCGCTTGTTCTTTATCTGGATCAT 59.181 41.667 0.00 0.00 0.00 2.45
2390 2819 3.556817 TGTGCTGCCACATAGGAAG 57.443 52.632 0.00 0.00 46.51 3.46
2462 3806 7.278424 CCAGGAAACTATTTTGGCAATACATTG 59.722 37.037 0.00 0.00 40.21 2.82
2752 4122 7.013750 TGTCAATGTAAGCAAACAACATCCTTA 59.986 33.333 0.00 0.00 32.80 2.69
2927 4297 1.130777 TATATGCTGTGCTCTGGCCA 58.869 50.000 4.71 4.71 37.74 5.36
2940 4332 3.193267 GCTCTGGCCAATGATGTTTGTTA 59.807 43.478 7.01 0.00 0.00 2.41
3165 4637 5.102313 TGCAGTCAAATACTCGATGTAGTG 58.898 41.667 0.00 0.00 35.76 2.74
3666 5415 6.039717 TCCACCTTTATTTCTAATCAGCATGC 59.960 38.462 10.51 10.51 34.76 4.06
3706 5457 8.429641 TCTTATCTGGGCCTTAGTTTATTACTG 58.570 37.037 4.53 0.00 37.73 2.74
3736 5487 5.276489 CGGTGCTATTTTTATTTGCATGCTG 60.276 40.000 20.33 0.00 36.04 4.41
3740 5491 8.655092 GTGCTATTTTTATTTGCATGCTGTTTA 58.345 29.630 20.33 2.80 36.04 2.01
3784 5535 2.315176 AGTTTGCCTACATTTGCCACA 58.685 42.857 0.00 0.00 0.00 4.17
4001 5754 6.312672 GCTAGCCAAAACAAAGAAGAAACAAA 59.687 34.615 2.29 0.00 0.00 2.83
4002 5755 7.148490 GCTAGCCAAAACAAAGAAGAAACAAAA 60.148 33.333 2.29 0.00 0.00 2.44
4003 5756 7.132694 AGCCAAAACAAAGAAGAAACAAAAG 57.867 32.000 0.00 0.00 0.00 2.27
4004 5757 6.149308 AGCCAAAACAAAGAAGAAACAAAAGG 59.851 34.615 0.00 0.00 0.00 3.11
4005 5758 6.148645 GCCAAAACAAAGAAGAAACAAAAGGA 59.851 34.615 0.00 0.00 0.00 3.36
4006 5759 7.518161 CCAAAACAAAGAAGAAACAAAAGGAC 58.482 34.615 0.00 0.00 0.00 3.85
4007 5760 7.172361 CCAAAACAAAGAAGAAACAAAAGGACA 59.828 33.333 0.00 0.00 0.00 4.02
4008 5761 7.889589 AAACAAAGAAGAAACAAAAGGACAG 57.110 32.000 0.00 0.00 0.00 3.51
4009 5762 6.834168 ACAAAGAAGAAACAAAAGGACAGA 57.166 33.333 0.00 0.00 0.00 3.41
4010 5763 6.621613 ACAAAGAAGAAACAAAAGGACAGAC 58.378 36.000 0.00 0.00 0.00 3.51
4011 5764 5.836821 AAGAAGAAACAAAAGGACAGACC 57.163 39.130 0.00 0.00 39.35 3.85
4012 5765 4.207955 AGAAGAAACAAAAGGACAGACCC 58.792 43.478 0.00 0.00 40.05 4.46
4013 5766 3.662759 AGAAACAAAAGGACAGACCCA 57.337 42.857 0.00 0.00 40.05 4.51
4014 5767 3.555966 AGAAACAAAAGGACAGACCCAG 58.444 45.455 0.00 0.00 40.05 4.45
4015 5768 3.053619 AGAAACAAAAGGACAGACCCAGT 60.054 43.478 0.00 0.00 40.05 4.00
4016 5769 2.348411 ACAAAAGGACAGACCCAGTG 57.652 50.000 0.00 0.00 40.05 3.66
4017 5770 0.954452 CAAAAGGACAGACCCAGTGC 59.046 55.000 0.00 0.00 40.05 4.40
4018 5771 0.550914 AAAAGGACAGACCCAGTGCA 59.449 50.000 0.00 0.00 40.05 4.57
4019 5772 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
4020 5773 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
4021 5774 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
4022 5775 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
4023 5776 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
4024 5777 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
4025 5778 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
4026 5779 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
4027 5780 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
4028 5781 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
4029 5782 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
4030 5783 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
4031 5784 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
4032 5785 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
4033 5786 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
4034 5787 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
4035 5788 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
4036 5789 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
4037 5790 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
4038 5791 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
4046 5799 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
4047 5800 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
4048 5801 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
4049 5802 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
4050 5803 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
4051 5804 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
4052 5805 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
4054 5807 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
4055 5808 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
4056 5809 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
4057 5810 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
4058 5811 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
4059 5812 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
4060 5813 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
4061 5814 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
4062 5815 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
4063 5816 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
4064 5817 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
4065 5818 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
4066 5819 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
4067 5820 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
4068 5821 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
4069 5822 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
4070 5823 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
4071 5824 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
4072 5825 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
4073 5826 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
4074 5827 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
4075 5828 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
4076 5829 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
4077 5830 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
4078 5831 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
4079 5832 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
4080 5833 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
4081 5834 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
4082 5835 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
4083 5836 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
4084 5837 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
4085 5838 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
4086 5839 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
4087 5840 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
4098 5851 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
4099 5852 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
4100 5853 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
4101 5854 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
4103 5856 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
4104 5857 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
4105 5858 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
4106 5859 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
4107 5860 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
4108 5861 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
4109 5862 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
4110 5863 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
4119 5872 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
4120 5873 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
4121 5874 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
4122 5875 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
4123 5876 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
4124 5877 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
4125 5878 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
4126 5879 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
4127 5880 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
4128 5881 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
4139 5892 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
4140 5893 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
4141 5894 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
4142 5895 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
4143 5896 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
4144 5897 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
4145 5898 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
4151 5904 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
4152 5905 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
4153 5906 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
4154 5907 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
4155 5908 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
4156 5909 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
4157 5910 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
4170 5923 3.970410 CCAGGCCTGCCCTCAACA 61.970 66.667 28.39 0.00 44.09 3.33
4171 5924 2.115910 CAGGCCTGCCCTCAACAA 59.884 61.111 22.33 0.00 44.09 2.83
4172 5925 1.531365 CAGGCCTGCCCTCAACAAA 60.531 57.895 22.33 0.00 44.09 2.83
4173 5926 1.228675 AGGCCTGCCCTCAACAAAG 60.229 57.895 3.11 0.00 41.21 2.77
4174 5927 1.228552 GGCCTGCCCTCAACAAAGA 60.229 57.895 0.00 0.00 0.00 2.52
4175 5928 0.827507 GGCCTGCCCTCAACAAAGAA 60.828 55.000 0.00 0.00 0.00 2.52
4176 5929 0.600057 GCCTGCCCTCAACAAAGAAG 59.400 55.000 0.00 0.00 0.00 2.85
4177 5930 1.819305 GCCTGCCCTCAACAAAGAAGA 60.819 52.381 0.00 0.00 0.00 2.87
4178 5931 2.586425 CCTGCCCTCAACAAAGAAGAA 58.414 47.619 0.00 0.00 0.00 2.52
4179 5932 2.958355 CCTGCCCTCAACAAAGAAGAAA 59.042 45.455 0.00 0.00 0.00 2.52
4180 5933 3.243535 CCTGCCCTCAACAAAGAAGAAAC 60.244 47.826 0.00 0.00 0.00 2.78
4181 5934 3.360867 TGCCCTCAACAAAGAAGAAACA 58.639 40.909 0.00 0.00 0.00 2.83
4182 5935 3.766591 TGCCCTCAACAAAGAAGAAACAA 59.233 39.130 0.00 0.00 0.00 2.83
4268 6021 8.089115 ACTGTATTTTCTTACTGTGCTTCTTC 57.911 34.615 0.00 0.00 34.27 2.87
4549 6319 2.098934 GCCACATTCACTGACAACAACA 59.901 45.455 0.00 0.00 0.00 3.33
4741 6512 7.574779 CGGTTTGTCCAATTGTTTCTCATGATA 60.575 37.037 4.43 0.00 35.57 2.15
4744 6515 7.943079 TGTCCAATTGTTTCTCATGATATGT 57.057 32.000 4.43 0.00 0.00 2.29
4745 6516 8.352137 TGTCCAATTGTTTCTCATGATATGTT 57.648 30.769 4.43 0.00 0.00 2.71
4863 6687 0.937441 AGGCCCCATCTACAGAGAGA 59.063 55.000 0.00 0.00 34.35 3.10
5024 6848 4.986659 GGAATTCATATCAATGCTGGTTGC 59.013 41.667 7.93 0.00 43.25 4.17
5070 6894 3.058224 GGCAGGTTTCAGTACATGTTCAC 60.058 47.826 2.30 0.00 32.70 3.18
5093 6917 6.640907 CACCTTGCAGTACTTTACCAAAATTC 59.359 38.462 0.00 0.00 0.00 2.17
5102 6926 8.088365 AGTACTTTACCAAAATTCAGGCATTTC 58.912 33.333 0.00 0.00 0.00 2.17
5257 7083 6.710744 GGTCTTTCAAGTCTTCCAAGTATGAA 59.289 38.462 0.00 0.00 0.00 2.57
5271 7099 7.312154 TCCAAGTATGAAAAATTGGATCAACG 58.688 34.615 1.91 0.00 44.75 4.10
5289 7225 4.281435 TCAACGACCTACCATGTAGTCAAA 59.719 41.667 0.00 0.00 0.00 2.69
5304 7240 5.408909 TGTAGTCAAACAAAGTGTCGTTTCA 59.591 36.000 0.00 0.00 33.14 2.69
5323 7259 6.021074 CGTTTCACAATCACGATTTGAAACAA 60.021 34.615 29.78 14.49 44.84 2.83
5326 7262 6.502652 TCACAATCACGATTTGAAACAATGT 58.497 32.000 0.00 0.00 37.92 2.71
5484 7432 0.756294 TCAAAGTGAAGGAGGTCGCA 59.244 50.000 0.00 0.00 0.00 5.10
5574 7522 0.597377 TTCCCATCATCGTCATCGCG 60.597 55.000 0.00 0.00 36.96 5.87
5600 7548 1.068472 CGACTCGTGCTTCAGGTAAGT 60.068 52.381 0.00 0.00 37.53 2.24
5606 7554 2.096218 CGTGCTTCAGGTAAGTGCTTTC 60.096 50.000 0.00 0.00 37.53 2.62
5628 7576 8.792830 TTTCACAGAGGTAGATCTATTTTTGG 57.207 34.615 5.57 0.00 0.00 3.28
5641 7589 8.057623 AGATCTATTTTTGGTGATCATCTTGGT 58.942 33.333 7.64 0.00 38.13 3.67
5643 7591 8.506168 TCTATTTTTGGTGATCATCTTGGTAC 57.494 34.615 7.64 0.00 0.00 3.34
5756 7708 1.827399 AAGGTGACATCTCCGCCGTT 61.827 55.000 0.00 0.00 39.10 4.44
5804 7756 1.066573 CAAGTTCCAGAGGTCGCTGAT 60.067 52.381 3.32 0.00 38.14 2.90
5810 7762 1.751351 CCAGAGGTCGCTGATTGTCTA 59.249 52.381 3.32 0.00 38.14 2.59
5855 7807 0.758310 TGCAGGTTTGGTGCCAATCA 60.758 50.000 4.32 0.00 40.43 2.57
5878 7830 1.850345 TCCCAAAACCTCTGTTGTCCT 59.150 47.619 0.00 0.00 34.13 3.85
6005 7961 1.005215 CCAAGGAATCTGGCCAAGAGT 59.995 52.381 7.01 5.82 38.67 3.24
6028 7984 5.068234 GTGACTACACAGTAAGCATACCA 57.932 43.478 0.00 0.00 45.32 3.25
6029 7985 5.103000 GTGACTACACAGTAAGCATACCAG 58.897 45.833 0.00 0.00 45.32 4.00
6031 7987 5.105877 TGACTACACAGTAAGCATACCAGAC 60.106 44.000 0.00 0.00 34.21 3.51
6033 7989 1.927174 CACAGTAAGCATACCAGACGC 59.073 52.381 0.00 0.00 32.08 5.19
6035 7991 1.137086 CAGTAAGCATACCAGACGCCT 59.863 52.381 0.00 0.00 32.08 5.52
6036 7992 1.137086 AGTAAGCATACCAGACGCCTG 59.863 52.381 0.00 0.00 40.09 4.85
6037 7993 1.134788 GTAAGCATACCAGACGCCTGT 60.135 52.381 0.00 0.00 38.74 4.00
6038 7994 0.391661 AAGCATACCAGACGCCTGTG 60.392 55.000 0.00 0.00 38.74 3.66
6039 7995 2.464459 GCATACCAGACGCCTGTGC 61.464 63.158 0.00 0.00 38.74 4.57
6040 7996 1.219124 CATACCAGACGCCTGTGCT 59.781 57.895 0.00 0.00 38.74 4.40
6042 7998 2.284798 ATACCAGACGCCTGTGCTCG 62.285 60.000 0.00 0.00 38.74 5.03
6043 7999 4.363990 CCAGACGCCTGTGCTCGT 62.364 66.667 0.00 0.00 42.09 4.18
6136 9351 1.527380 TTTGCCTCCGGGTTGTGTC 60.527 57.895 0.00 0.00 34.45 3.67
6143 9358 0.601576 TCCGGGTTGTGTCGACATTG 60.602 55.000 23.12 7.95 30.13 2.82
6262 9484 7.329471 TGATTGCGAAGTATATGTCAGCTATTC 59.671 37.037 0.00 0.00 0.00 1.75
6263 9485 6.332735 TGCGAAGTATATGTCAGCTATTCT 57.667 37.500 0.00 0.00 0.00 2.40
6290 9512 2.672961 TGACGATCCATTGACTCACC 57.327 50.000 0.00 0.00 0.00 4.02
6387 9609 5.008613 GGCACCACCTTGTGTATATTGTATG 59.991 44.000 0.00 0.00 38.52 2.39
6467 9690 3.117491 TCAAACCAAGAGCTGACTGAG 57.883 47.619 0.00 0.00 0.00 3.35
6480 9703 5.312079 AGCTGACTGAGATTAACTTTTGCT 58.688 37.500 0.00 0.00 0.00 3.91
6481 9704 5.767168 AGCTGACTGAGATTAACTTTTGCTT 59.233 36.000 0.00 0.00 0.00 3.91
6671 9897 8.837788 TGCTTATACAATAATCAGATCACAGG 57.162 34.615 0.00 0.00 0.00 4.00
6689 9915 0.037232 GGAACGGAACCTCCAGTGAG 60.037 60.000 0.00 0.00 35.91 3.51
6745 9971 5.301298 CCCAAGAAATTCCATCTCATCTTCC 59.699 44.000 0.00 0.00 0.00 3.46
6793 10020 3.744660 ACCTGTTGACTTGACCTGATTC 58.255 45.455 0.00 0.00 0.00 2.52
6817 10048 9.862149 TTCCTCTACTACATATGAACAGTGATA 57.138 33.333 10.38 0.27 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.707106 TATTCATGCAAGGCCCATGG 58.293 50.000 17.31 4.14 40.29 3.66
4 5 4.464951 ACATATATTCATGCAAGGCCCATG 59.535 41.667 12.80 12.80 41.03 3.66
5 6 4.680407 ACATATATTCATGCAAGGCCCAT 58.320 39.130 0.00 0.00 0.00 4.00
6 7 4.116782 ACATATATTCATGCAAGGCCCA 57.883 40.909 0.00 0.00 0.00 5.36
7 8 6.263168 GGTATACATATATTCATGCAAGGCCC 59.737 42.308 0.00 0.00 0.00 5.80
8 9 7.056635 AGGTATACATATATTCATGCAAGGCC 58.943 38.462 5.01 0.00 0.00 5.19
9 10 9.613428 TTAGGTATACATATATTCATGCAAGGC 57.387 33.333 5.01 0.00 0.00 4.35
23 24 9.039165 GGCCCAAGTATAACTTAGGTATACATA 57.961 37.037 24.16 0.00 38.90 2.29
24 25 7.738065 AGGCCCAAGTATAACTTAGGTATACAT 59.262 37.037 24.16 13.33 38.90 2.29
25 26 7.015877 CAGGCCCAAGTATAACTTAGGTATACA 59.984 40.741 24.16 0.00 38.90 2.29
26 27 7.015974 ACAGGCCCAAGTATAACTTAGGTATAC 59.984 40.741 17.17 17.17 38.90 1.47
27 28 7.077745 ACAGGCCCAAGTATAACTTAGGTATA 58.922 38.462 0.00 0.00 38.90 1.47
28 29 5.909417 ACAGGCCCAAGTATAACTTAGGTAT 59.091 40.000 0.00 0.00 38.90 2.73
29 30 5.282946 ACAGGCCCAAGTATAACTTAGGTA 58.717 41.667 0.00 0.00 38.90 3.08
30 31 4.109320 ACAGGCCCAAGTATAACTTAGGT 58.891 43.478 0.00 0.00 38.90 3.08
31 32 4.772886 ACAGGCCCAAGTATAACTTAGG 57.227 45.455 0.00 0.52 39.53 2.69
32 33 5.287226 CGTACAGGCCCAAGTATAACTTAG 58.713 45.833 0.00 0.00 36.03 2.18
33 34 4.441913 GCGTACAGGCCCAAGTATAACTTA 60.442 45.833 0.00 0.00 36.03 2.24
34 35 3.680754 GCGTACAGGCCCAAGTATAACTT 60.681 47.826 0.00 0.00 39.39 2.66
35 36 2.159000 GCGTACAGGCCCAAGTATAACT 60.159 50.000 0.00 0.00 0.00 2.24
36 37 2.159000 AGCGTACAGGCCCAAGTATAAC 60.159 50.000 0.00 0.00 0.00 1.89
37 38 2.112998 AGCGTACAGGCCCAAGTATAA 58.887 47.619 0.00 0.00 0.00 0.98
38 39 1.784358 AGCGTACAGGCCCAAGTATA 58.216 50.000 0.00 0.00 0.00 1.47
39 40 0.909623 AAGCGTACAGGCCCAAGTAT 59.090 50.000 0.00 0.00 0.00 2.12
40 41 0.248289 GAAGCGTACAGGCCCAAGTA 59.752 55.000 0.00 0.00 0.00 2.24
41 42 1.003718 GAAGCGTACAGGCCCAAGT 60.004 57.895 0.00 0.00 0.00 3.16
42 43 2.100631 CGAAGCGTACAGGCCCAAG 61.101 63.158 0.00 0.00 0.00 3.61
43 44 2.047655 CGAAGCGTACAGGCCCAA 60.048 61.111 0.00 0.00 0.00 4.12
55 56 5.690984 TATCGAGATTCCCGAAGCGAAGC 62.691 52.174 0.00 0.00 46.55 3.86
56 57 0.100682 TCGAGATTCCCGAAGCGAAG 59.899 55.000 0.00 0.00 32.64 3.79
57 58 0.744874 ATCGAGATTCCCGAAGCGAA 59.255 50.000 0.00 0.00 39.62 4.70
58 59 1.535896 CTATCGAGATTCCCGAAGCGA 59.464 52.381 0.00 0.00 39.62 4.93
59 60 1.401670 CCTATCGAGATTCCCGAAGCG 60.402 57.143 0.00 0.00 39.62 4.68
60 61 1.067495 CCCTATCGAGATTCCCGAAGC 60.067 57.143 0.00 0.00 39.62 3.86
61 62 2.229302 GTCCCTATCGAGATTCCCGAAG 59.771 54.545 0.00 0.00 39.62 3.79
62 63 2.236766 GTCCCTATCGAGATTCCCGAA 58.763 52.381 0.00 0.00 39.62 4.30
63 64 1.547223 GGTCCCTATCGAGATTCCCGA 60.547 57.143 0.00 0.00 40.53 5.14
64 65 0.889306 GGTCCCTATCGAGATTCCCG 59.111 60.000 0.00 0.00 0.00 5.14
65 66 0.889306 CGGTCCCTATCGAGATTCCC 59.111 60.000 0.00 0.00 0.00 3.97
66 67 1.540707 GTCGGTCCCTATCGAGATTCC 59.459 57.143 0.00 0.00 39.37 3.01
67 68 1.197264 CGTCGGTCCCTATCGAGATTC 59.803 57.143 0.00 0.00 39.37 2.52
68 69 1.236628 CGTCGGTCCCTATCGAGATT 58.763 55.000 0.00 0.00 39.37 2.40
69 70 0.605860 CCGTCGGTCCCTATCGAGAT 60.606 60.000 2.08 0.00 39.37 2.75
70 71 1.227764 CCGTCGGTCCCTATCGAGA 60.228 63.158 2.08 0.00 39.37 4.04
71 72 2.259439 CCCGTCGGTCCCTATCGAG 61.259 68.421 11.06 0.00 39.37 4.04
72 73 2.060567 ATCCCGTCGGTCCCTATCGA 62.061 60.000 11.06 0.00 35.39 3.59
73 74 1.602888 ATCCCGTCGGTCCCTATCG 60.603 63.158 11.06 0.00 0.00 2.92
74 75 1.533469 CCATCCCGTCGGTCCCTATC 61.533 65.000 11.06 0.00 0.00 2.08
75 76 1.533273 CCATCCCGTCGGTCCCTAT 60.533 63.158 11.06 0.00 0.00 2.57
76 77 2.015243 ATCCATCCCGTCGGTCCCTA 62.015 60.000 11.06 0.00 0.00 3.53
77 78 2.015243 TATCCATCCCGTCGGTCCCT 62.015 60.000 11.06 0.00 0.00 4.20
78 79 0.903454 ATATCCATCCCGTCGGTCCC 60.903 60.000 11.06 0.00 0.00 4.46
79 80 0.531200 GATATCCATCCCGTCGGTCC 59.469 60.000 11.06 0.00 0.00 4.46
80 81 0.170561 CGATATCCATCCCGTCGGTC 59.829 60.000 11.06 0.00 0.00 4.79
81 82 0.538977 ACGATATCCATCCCGTCGGT 60.539 55.000 11.06 0.00 36.68 4.69
82 83 0.109272 CACGATATCCATCCCGTCGG 60.109 60.000 3.60 3.60 36.68 4.79
83 84 0.732880 GCACGATATCCATCCCGTCG 60.733 60.000 0.00 0.00 38.21 5.12
84 85 0.732880 CGCACGATATCCATCCCGTC 60.733 60.000 0.00 0.00 32.50 4.79
85 86 1.289066 CGCACGATATCCATCCCGT 59.711 57.895 0.00 0.00 35.46 5.28
86 87 2.094659 GCGCACGATATCCATCCCG 61.095 63.158 0.30 0.00 0.00 5.14
87 88 1.005037 TGCGCACGATATCCATCCC 60.005 57.895 5.66 0.00 0.00 3.85
88 89 1.291877 GGTGCGCACGATATCCATCC 61.292 60.000 32.35 12.45 0.00 3.51
89 90 0.319900 AGGTGCGCACGATATCCATC 60.320 55.000 32.35 16.11 0.00 3.51
90 91 0.601046 CAGGTGCGCACGATATCCAT 60.601 55.000 32.35 3.58 0.00 3.41
91 92 1.227234 CAGGTGCGCACGATATCCA 60.227 57.895 32.35 0.00 0.00 3.41
92 93 1.227263 ACAGGTGCGCACGATATCC 60.227 57.895 32.35 18.86 0.00 2.59
93 94 1.927210 CACAGGTGCGCACGATATC 59.073 57.895 32.35 19.02 0.00 1.63
94 95 4.108902 CACAGGTGCGCACGATAT 57.891 55.556 32.35 16.45 0.00 1.63
111 112 0.864455 GTGCCATTCTATGCTCGAGC 59.136 55.000 30.42 30.42 42.50 5.03
112 113 2.522836 AGTGCCATTCTATGCTCGAG 57.477 50.000 8.45 8.45 0.00 4.04
113 114 2.988010 AAGTGCCATTCTATGCTCGA 57.012 45.000 0.00 0.00 0.00 4.04
114 115 2.033407 CGAAAGTGCCATTCTATGCTCG 60.033 50.000 0.00 0.00 0.00 5.03
115 116 2.939103 ACGAAAGTGCCATTCTATGCTC 59.061 45.455 0.00 0.00 46.97 4.26
116 117 2.991250 ACGAAAGTGCCATTCTATGCT 58.009 42.857 0.00 0.00 46.97 3.79
129 130 8.773404 AAAATAGTAGATACTTGCACGAAAGT 57.227 30.769 0.00 0.00 42.89 2.66
130 131 8.869897 TGAAAATAGTAGATACTTGCACGAAAG 58.130 33.333 0.00 0.00 37.73 2.62
131 132 8.653338 GTGAAAATAGTAGATACTTGCACGAAA 58.347 33.333 0.00 0.00 37.73 3.46
132 133 7.815549 TGTGAAAATAGTAGATACTTGCACGAA 59.184 33.333 0.00 0.00 37.73 3.85
133 134 7.317390 TGTGAAAATAGTAGATACTTGCACGA 58.683 34.615 0.00 0.00 37.73 4.35
134 135 7.520119 TGTGAAAATAGTAGATACTTGCACG 57.480 36.000 0.00 0.00 37.73 5.34
199 200 2.487532 CGGAATAGGGGAGCGTCGT 61.488 63.158 0.00 0.00 0.00 4.34
200 201 1.524863 ATCGGAATAGGGGAGCGTCG 61.525 60.000 0.00 0.00 0.00 5.12
203 204 1.185618 TCCATCGGAATAGGGGAGCG 61.186 60.000 0.00 0.00 0.00 5.03
237 238 0.798776 AAATCTGCTTCAAGTCGGCG 59.201 50.000 0.00 0.00 0.00 6.46
262 263 2.450476 GTACTTGTACCTCTCCGGGAA 58.550 52.381 0.00 0.00 36.97 3.97
264 265 1.109609 GGTACTTGTACCTCTCCGGG 58.890 60.000 19.48 0.00 37.16 5.73
265 266 1.109609 GGGTACTTGTACCTCTCCGG 58.890 60.000 23.96 0.00 39.97 5.14
266 267 0.737219 CGGGTACTTGTACCTCTCCG 59.263 60.000 23.96 16.85 39.97 4.63
267 268 2.022934 CTCGGGTACTTGTACCTCTCC 58.977 57.143 23.96 10.58 39.97 3.71
268 269 2.682352 GACTCGGGTACTTGTACCTCTC 59.318 54.545 23.96 10.87 39.97 3.20
308 309 0.609957 TGCATGAACCTGCTTCTGGG 60.610 55.000 0.00 0.00 42.75 4.45
699 700 7.870826 CACAAACCAATGTGTCAGACTAAATA 58.129 34.615 1.31 0.00 44.46 1.40
734 735 4.129380 TCCAGCAATCCGAATCACATAAG 58.871 43.478 0.00 0.00 0.00 1.73
744 746 2.715749 AATCACATCCAGCAATCCGA 57.284 45.000 0.00 0.00 0.00 4.55
747 749 4.498682 GCCAACTAATCACATCCAGCAATC 60.499 45.833 0.00 0.00 0.00 2.67
752 754 5.282055 TCTAGCCAACTAATCACATCCAG 57.718 43.478 0.00 0.00 0.00 3.86
758 760 5.929415 GCTTCCTATCTAGCCAACTAATCAC 59.071 44.000 0.00 0.00 0.00 3.06
759 761 6.102897 GCTTCCTATCTAGCCAACTAATCA 57.897 41.667 0.00 0.00 0.00 2.57
772 774 6.331307 ACAGGATTATCAAAGGCTTCCTATCT 59.669 38.462 0.00 0.00 32.44 1.98
780 782 3.019564 GTGCACAGGATTATCAAAGGCT 58.980 45.455 13.17 0.00 0.00 4.58
819 821 7.813852 ATACGAGCAAACTTAAGTTACTCTG 57.186 36.000 29.84 26.26 38.32 3.35
848 850 3.228749 TCGAATACGTGTTTGTCGACTC 58.771 45.455 17.92 7.95 35.92 3.36
849 851 3.272439 TCGAATACGTGTTTGTCGACT 57.728 42.857 17.92 0.00 35.92 4.18
851 853 2.997463 TGTCGAATACGTGTTTGTCGA 58.003 42.857 11.54 7.69 38.32 4.20
852 854 3.422876 TCTTGTCGAATACGTGTTTGTCG 59.577 43.478 11.54 5.47 40.69 4.35
853 855 4.959631 TCTTGTCGAATACGTGTTTGTC 57.040 40.909 11.54 7.27 40.69 3.18
854 856 5.721876 TTTCTTGTCGAATACGTGTTTGT 57.278 34.783 11.54 0.00 40.69 2.83
886 888 3.340034 CGTATTTTAGGTGGGAGCACAA 58.660 45.455 0.00 0.00 0.00 3.33
890 892 1.306148 GGCGTATTTTAGGTGGGAGC 58.694 55.000 0.00 0.00 0.00 4.70
917 919 2.100989 GTTCGAGGTGGAGGATACAGT 58.899 52.381 0.00 0.00 41.41 3.55
975 977 1.227002 CGGCGGGTCTTCTAGAAGC 60.227 63.158 25.04 19.32 38.28 3.86
1089 1091 0.463474 AGTCGTAGCCTCGGTACTCC 60.463 60.000 0.00 0.00 34.78 3.85
1182 1217 3.636231 CCCTCCTGGCGGAACACA 61.636 66.667 3.76 0.00 39.29 3.72
1279 1424 5.885449 TTTAATATCAGCCCCCAAAATGG 57.115 39.130 0.00 0.00 37.25 3.16
1334 1480 5.047660 CCAACCGGTTTAATCTCATTTGGAA 60.048 40.000 19.55 0.00 34.14 3.53
1369 1515 1.544759 CGGTATGGCCTGATAAACCCC 60.545 57.143 3.32 0.00 34.25 4.95
1392 1538 4.957971 ACGAATTGCATAAAGAGTTGACG 58.042 39.130 0.00 0.00 0.00 4.35
1524 1729 3.697542 AGACGCCAAACAACCTTAAAAGT 59.302 39.130 0.00 0.00 0.00 2.66
1549 1755 4.714308 ACCCTTCTCATCAACCTCTAGAAG 59.286 45.833 0.00 0.00 41.73 2.85
1581 1801 1.271871 TGAATGGGAAATGTGGCGTCT 60.272 47.619 0.00 0.00 0.00 4.18
1584 1804 0.179166 CGTGAATGGGAAATGTGGCG 60.179 55.000 0.00 0.00 0.00 5.69
1594 1814 0.179129 GCAATTCCAGCGTGAATGGG 60.179 55.000 4.78 2.87 38.44 4.00
1597 1817 1.470098 GTGAGCAATTCCAGCGTGAAT 59.530 47.619 0.00 0.00 36.53 2.57
1677 1897 1.026718 CCAAGAACTCATCACCGGCC 61.027 60.000 0.00 0.00 0.00 6.13
1856 2164 1.996191 GAGACTTTAGCACAAGGAGCG 59.004 52.381 0.50 0.00 37.01 5.03
1872 2180 2.768527 TGGAGGGATCAGAACATGAGAC 59.231 50.000 0.00 0.00 42.53 3.36
2005 2362 7.645340 GTCTCACATTATGTATTGCAATTCCAC 59.355 37.037 18.75 10.53 0.00 4.02
2355 2784 4.872691 CAGCACAGTATACTTCTCCAAAGG 59.127 45.833 1.56 0.00 0.00 3.11
2390 2819 7.971722 AGGTGTATACGTTATTTCCAAATTTGC 59.028 33.333 12.92 0.00 0.00 3.68
3093 4492 5.893255 ACAACAATTATAGGTCATGTGCCAT 59.107 36.000 10.70 5.88 0.00 4.40
3319 5032 6.016860 GCATTATGTGATCCATAAGACTGCAA 60.017 38.462 21.20 5.75 46.43 4.08
3586 5316 7.701445 ACAGATGAAGCAATTAAGTAATGAGC 58.299 34.615 0.00 2.23 0.00 4.26
3666 5415 5.337410 CCCAGATAAGATGGATACTGCAGAG 60.337 48.000 23.35 0.00 40.51 3.35
3671 5421 3.843027 AGGCCCAGATAAGATGGATACTG 59.157 47.826 0.00 0.00 40.51 2.74
3679 5429 9.172060 AGTAATAAACTAAGGCCCAGATAAGAT 57.828 33.333 8.92 0.00 36.36 2.40
3706 5457 6.529829 TGCAAATAAAAATAGCACCGATGAAC 59.470 34.615 0.00 0.00 0.00 3.18
3736 5487 8.322091 AGTATATGAACCAGATATGCCCTAAAC 58.678 37.037 0.00 0.00 0.00 2.01
3740 5491 7.680310 ACTTAGTATATGAACCAGATATGCCCT 59.320 37.037 0.00 0.00 0.00 5.19
3794 5545 1.062587 GCGTGATAGTTGGCATGTGTC 59.937 52.381 0.00 0.00 0.00 3.67
3867 5618 1.375523 GGGTGCGTGTCCGAGAAAT 60.376 57.895 0.00 0.00 35.63 2.17
3961 5713 0.105039 CTAGCCTAGGGTGCTTTCGG 59.895 60.000 23.91 1.41 40.23 4.30
3963 5715 0.179043 GGCTAGCCTAGGGTGCTTTC 60.179 60.000 27.17 8.61 40.23 2.62
4001 5754 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36
4002 5755 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
4003 5756 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
4004 5757 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
4005 5758 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
4006 5759 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
4007 5760 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
4008 5761 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
4009 5762 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
4010 5763 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
4011 5764 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
4012 5765 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
4013 5766 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
4014 5767 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
4015 5768 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
4016 5769 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
4017 5770 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
4018 5771 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
4019 5772 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
4020 5773 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
4021 5774 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
4022 5775 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
4029 5782 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
4030 5783 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
4031 5784 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
4032 5785 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
4033 5786 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
4034 5787 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
4035 5788 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
4037 5790 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
4038 5791 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
4039 5792 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
4040 5793 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
4041 5794 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
4042 5795 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
4043 5796 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
4044 5797 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
4045 5798 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
4046 5799 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
4047 5800 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
4048 5801 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
4049 5802 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
4050 5803 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
4051 5804 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
4052 5805 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
4053 5806 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
4054 5807 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
4055 5808 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
4056 5809 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
4057 5810 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
4058 5811 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
4059 5812 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
4060 5813 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
4061 5814 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
4062 5815 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
4063 5816 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
4064 5817 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
4065 5818 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
4066 5819 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
4067 5820 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
4068 5821 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
4069 5822 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
4079 5832 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
4080 5833 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
4081 5834 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
4082 5835 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
4083 5836 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
4084 5837 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
4085 5838 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
4086 5839 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
4087 5840 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
4088 5841 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
4089 5842 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
4090 5843 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
4091 5844 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
4092 5845 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
4103 5856 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
4104 5857 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
4105 5858 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
4106 5859 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
4107 5860 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
4108 5861 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
4109 5862 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
4110 5863 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
4111 5864 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
4112 5865 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
4113 5866 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
4114 5867 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
4115 5868 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
4116 5869 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
4117 5870 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
4118 5871 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
4119 5872 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
4120 5873 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
4121 5874 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
4122 5875 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
4123 5876 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
4124 5877 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
4125 5878 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
4126 5879 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
4127 5880 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
4128 5881 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
4129 5882 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
4130 5883 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
4131 5884 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
4132 5885 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
4133 5886 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
4134 5887 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
4135 5888 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
4136 5889 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
4137 5890 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
4138 5891 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
4139 5892 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
4140 5893 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
4153 5906 3.512154 TTGTTGAGGGCAGGCCTGG 62.512 63.158 33.46 15.81 36.10 4.45
4154 5907 1.530013 CTTTGTTGAGGGCAGGCCTG 61.530 60.000 29.34 29.34 36.10 4.85
4155 5908 1.228675 CTTTGTTGAGGGCAGGCCT 60.229 57.895 17.36 17.36 36.10 5.19
4156 5909 0.827507 TTCTTTGTTGAGGGCAGGCC 60.828 55.000 4.33 4.33 0.00 5.19
4157 5910 0.600057 CTTCTTTGTTGAGGGCAGGC 59.400 55.000 0.00 0.00 0.00 4.85
4158 5911 2.276732 TCTTCTTTGTTGAGGGCAGG 57.723 50.000 0.00 0.00 0.00 4.85
4159 5912 3.381272 TGTTTCTTCTTTGTTGAGGGCAG 59.619 43.478 0.00 0.00 0.00 4.85
4160 5913 3.360867 TGTTTCTTCTTTGTTGAGGGCA 58.639 40.909 0.00 0.00 0.00 5.36
4161 5914 4.112634 GTTGTTTCTTCTTTGTTGAGGGC 58.887 43.478 0.00 0.00 0.00 5.19
4162 5915 5.323371 TGTTGTTTCTTCTTTGTTGAGGG 57.677 39.130 0.00 0.00 0.00 4.30
4163 5916 6.183360 GCTTTGTTGTTTCTTCTTTGTTGAGG 60.183 38.462 0.00 0.00 0.00 3.86
4164 5917 6.183360 GGCTTTGTTGTTTCTTCTTTGTTGAG 60.183 38.462 0.00 0.00 0.00 3.02
4165 5918 5.637387 GGCTTTGTTGTTTCTTCTTTGTTGA 59.363 36.000 0.00 0.00 0.00 3.18
4166 5919 5.407995 TGGCTTTGTTGTTTCTTCTTTGTTG 59.592 36.000 0.00 0.00 0.00 3.33
4167 5920 5.546526 TGGCTTTGTTGTTTCTTCTTTGTT 58.453 33.333 0.00 0.00 0.00 2.83
4168 5921 5.146010 TGGCTTTGTTGTTTCTTCTTTGT 57.854 34.783 0.00 0.00 0.00 2.83
4169 5922 6.479095 TTTGGCTTTGTTGTTTCTTCTTTG 57.521 33.333 0.00 0.00 0.00 2.77
4170 5923 7.503521 TTTTTGGCTTTGTTGTTTCTTCTTT 57.496 28.000 0.00 0.00 0.00 2.52
4549 6319 7.507616 CCACTATCCTTTAGTCTACCTCTCATT 59.492 40.741 0.00 0.00 0.00 2.57
4716 6486 5.841810 TCATGAGAAACAATTGGACAAACC 58.158 37.500 10.83 0.00 39.54 3.27
4863 6687 2.417243 GGCTCACAAAAACTGCAGTGTT 60.417 45.455 22.49 19.52 33.84 3.32
5070 6894 6.744112 TGAATTTTGGTAAAGTACTGCAAGG 58.256 36.000 0.00 0.00 39.30 3.61
5093 6917 6.375455 ACTGTTATGTTAGGAAGAAATGCCTG 59.625 38.462 0.00 0.00 35.73 4.85
5102 6926 6.582636 TGCCAGATACTGTTATGTTAGGAAG 58.417 40.000 0.00 0.00 0.00 3.46
5257 7083 4.658063 TGGTAGGTCGTTGATCCAATTTT 58.342 39.130 0.00 0.00 0.00 1.82
5271 7099 5.995897 ACTTTGTTTGACTACATGGTAGGTC 59.004 40.000 8.16 0.39 0.00 3.85
5289 7225 4.658071 GTGATTGTGAAACGACACTTTGT 58.342 39.130 11.56 0.00 42.39 2.83
5304 7240 6.198778 CACACATTGTTTCAAATCGTGATTGT 59.801 34.615 13.06 0.00 35.70 2.71
5323 7259 8.888716 TGCATCGTAAAATAATACTTCACACAT 58.111 29.630 0.00 0.00 0.00 3.21
5326 7262 7.466725 GCCTGCATCGTAAAATAATACTTCACA 60.467 37.037 0.00 0.00 0.00 3.58
5484 7432 2.037136 GCCTTCGCTGTGCATCAGT 61.037 57.895 14.87 0.00 45.23 3.41
5600 7548 6.798427 AATAGATCTACCTCTGTGAAAGCA 57.202 37.500 4.10 0.00 0.00 3.91
5606 7554 7.331026 TCACCAAAAATAGATCTACCTCTGTG 58.669 38.462 4.10 8.79 0.00 3.66
5641 7589 4.418526 AGGAGGATGAGAAGGAGATCAGTA 59.581 45.833 0.00 0.00 0.00 2.74
5643 7591 3.828451 GAGGAGGATGAGAAGGAGATCAG 59.172 52.174 0.00 0.00 0.00 2.90
5741 7693 2.264480 CCAACGGCGGAGATGTCA 59.736 61.111 13.24 0.00 0.00 3.58
5804 7756 3.070878 TGTTGATCACTGGCTGTAGACAA 59.929 43.478 0.00 1.66 29.15 3.18
5810 7762 4.641989 GGAATTATGTTGATCACTGGCTGT 59.358 41.667 0.00 0.00 0.00 4.40
5855 7807 4.292306 AGGACAACAGAGGTTTTGGGATAT 59.708 41.667 0.00 0.00 34.21 1.63
6022 7978 3.799753 GCACAGGCGTCTGGTATG 58.200 61.111 22.98 11.90 44.99 2.39
6048 8005 2.285083 ACTTTGTATGTGTGTGTGCGT 58.715 42.857 0.00 0.00 0.00 5.24
6090 8047 9.397280 ACTTGCTTTCTTTACTTACTTTTCTCT 57.603 29.630 0.00 0.00 0.00 3.10
6091 8048 9.439537 CACTTGCTTTCTTTACTTACTTTTCTC 57.560 33.333 0.00 0.00 0.00 2.87
6092 8049 8.957466 ACACTTGCTTTCTTTACTTACTTTTCT 58.043 29.630 0.00 0.00 0.00 2.52
6093 8050 9.569167 AACACTTGCTTTCTTTACTTACTTTTC 57.431 29.630 0.00 0.00 0.00 2.29
6095 8052 9.353999 CAAACACTTGCTTTCTTTACTTACTTT 57.646 29.630 0.00 0.00 0.00 2.66
6136 9351 5.944049 AATTACGCTACAGTACAATGTCG 57.056 39.130 0.00 0.00 34.56 4.35
6186 9408 1.282157 GGTAACCACCTCAGGCATCTT 59.718 52.381 0.00 0.00 42.11 2.40
6262 9484 5.009510 AGTCAATGGATCGTCATCAGTAGAG 59.990 44.000 0.00 0.00 0.00 2.43
6263 9485 4.889995 AGTCAATGGATCGTCATCAGTAGA 59.110 41.667 0.00 0.00 0.00 2.59
6290 9512 1.657181 GACACCTTGCAAAACCGCG 60.657 57.895 0.00 0.00 33.35 6.46
6387 9609 6.412362 AGATAATCTCACTGTATGGACACC 57.588 41.667 0.00 0.00 0.00 4.16
6420 9643 2.281517 GTAGCGCTGACTCTCTAGACA 58.718 52.381 22.90 0.00 0.00 3.41
6671 9897 0.670854 GCTCACTGGAGGTTCCGTTC 60.671 60.000 0.00 0.00 40.17 3.95
6689 9915 5.968387 AGCATCGTGTAATAAACTAGTGC 57.032 39.130 0.00 0.00 0.00 4.40
6745 9971 1.162181 ATGCATCAACGGCGATCCAG 61.162 55.000 16.62 0.96 0.00 3.86
6817 10048 4.371624 TGATTTGGACAGGTCAGTGAAT 57.628 40.909 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.