Multiple sequence alignment - TraesCS4B01G130000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G130000 chr4B 100.000 3486 0 0 1 3486 169935384 169938869 0.000000e+00 6438.0
1 TraesCS4B01G130000 chr4D 95.038 2519 108 10 971 3485 106680290 106677785 0.000000e+00 3943.0
2 TraesCS4B01G130000 chr4D 86.197 355 31 6 2335 2681 106677063 106676719 5.500000e-98 368.0
3 TraesCS4B01G130000 chr4D 95.098 102 5 0 2717 2818 106676719 106676618 1.000000e-35 161.0
4 TraesCS4B01G130000 chr4A 95.940 1330 43 3 1253 2574 469245070 469246396 0.000000e+00 2146.0
5 TraesCS4B01G130000 chr4A 93.430 761 41 7 2726 3485 469246746 469247498 0.000000e+00 1120.0
6 TraesCS4B01G130000 chr4A 96.386 249 7 1 971 1219 469244829 469245075 3.240000e-110 409.0
7 TraesCS4B01G130000 chr1A 94.198 879 43 2 1 871 590829954 590830832 0.000000e+00 1334.0
8 TraesCS4B01G130000 chr1A 92.708 96 7 0 874 969 590830812 590830907 4.690000e-29 139.0
9 TraesCS4B01G130000 chr2A 86.667 840 83 11 3 815 19840583 19841420 0.000000e+00 904.0
10 TraesCS4B01G130000 chr2A 83.660 153 23 2 481 633 32806037 32805887 3.630000e-30 143.0
11 TraesCS4B01G130000 chr7D 77.509 827 139 32 1921 2724 1186587 1185785 1.480000e-123 453.0
12 TraesCS4B01G130000 chr7D 78.426 394 58 13 418 785 173114449 173114841 7.520000e-57 231.0
13 TraesCS4B01G130000 chr7D 79.646 226 37 3 1570 1786 1186902 1186677 1.680000e-33 154.0
14 TraesCS4B01G130000 chr7D 84.337 83 9 4 488 567 403151961 403152042 1.040000e-10 78.7
15 TraesCS4B01G130000 chrUn 77.479 817 140 27 1929 2724 51486736 51487529 1.910000e-122 449.0
16 TraesCS4B01G130000 chrUn 77.518 814 139 28 1932 2724 316653649 316652859 1.910000e-122 449.0
17 TraesCS4B01G130000 chrUn 79.272 632 109 13 1929 2549 245964275 245964895 4.160000e-114 422.0
18 TraesCS4B01G130000 chrUn 78.323 632 116 12 1929 2549 269323189 269323810 4.220000e-104 388.0
19 TraesCS4B01G130000 chrUn 81.281 203 29 3 1570 1763 245963954 245964156 4.660000e-34 156.0
20 TraesCS4B01G130000 chrUn 79.803 203 32 3 1570 1763 269322868 269323070 4.690000e-29 139.0
21 TraesCS4B01G130000 chr3A 85.588 451 36 13 1 448 22145081 22145505 2.470000e-121 446.0
22 TraesCS4B01G130000 chr3A 88.312 231 20 3 1 231 53327064 53326841 1.590000e-68 270.0
23 TraesCS4B01G130000 chr3A 88.312 231 20 4 1 231 646287906 646288129 1.590000e-68 270.0
24 TraesCS4B01G130000 chr3A 81.707 164 23 4 232 389 646288162 646288324 2.820000e-26 130.0
25 TraesCS4B01G130000 chr3A 79.878 164 26 4 232 389 53326808 53326646 2.840000e-21 113.0
26 TraesCS4B01G130000 chr3A 83.333 84 10 4 488 568 125398757 125398675 1.340000e-09 75.0
27 TraesCS4B01G130000 chr3B 88.745 231 19 3 1 231 758403761 758403538 3.430000e-70 276.0
28 TraesCS4B01G130000 chr3B 81.098 164 24 4 232 389 758403507 758403345 1.310000e-24 124.0
29 TraesCS4B01G130000 chr5A 83.660 153 23 2 481 633 362398819 362398669 3.630000e-30 143.0
30 TraesCS4B01G130000 chr6B 83.007 153 24 2 481 633 24729107 24729257 1.690000e-28 137.0
31 TraesCS4B01G130000 chr2D 84.337 83 9 4 488 567 43250440 43250521 1.040000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G130000 chr4B 169935384 169938869 3485 False 6438.000000 6438 100.0000 1 3486 1 chr4B.!!$F1 3485
1 TraesCS4B01G130000 chr4D 106676618 106680290 3672 True 1490.666667 3943 92.1110 971 3485 3 chr4D.!!$R1 2514
2 TraesCS4B01G130000 chr4A 469244829 469247498 2669 False 1225.000000 2146 95.2520 971 3485 3 chr4A.!!$F1 2514
3 TraesCS4B01G130000 chr1A 590829954 590830907 953 False 736.500000 1334 93.4530 1 969 2 chr1A.!!$F1 968
4 TraesCS4B01G130000 chr2A 19840583 19841420 837 False 904.000000 904 86.6670 3 815 1 chr2A.!!$F1 812
5 TraesCS4B01G130000 chr7D 1185785 1186902 1117 True 303.500000 453 78.5775 1570 2724 2 chr7D.!!$R1 1154
6 TraesCS4B01G130000 chrUn 51486736 51487529 793 False 449.000000 449 77.4790 1929 2724 1 chrUn.!!$F1 795
7 TraesCS4B01G130000 chrUn 316652859 316653649 790 True 449.000000 449 77.5180 1932 2724 1 chrUn.!!$R1 792
8 TraesCS4B01G130000 chrUn 245963954 245964895 941 False 289.000000 422 80.2765 1570 2549 2 chrUn.!!$F2 979
9 TraesCS4B01G130000 chrUn 269322868 269323810 942 False 263.500000 388 79.0630 1570 2549 2 chrUn.!!$F3 979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 502 0.038251 GAGTGACGTGGTCTGCATCA 60.038 55.0 0.00 0.00 33.15 3.07 F
926 962 0.172803 GTCTACCTGGTACCGCACAG 59.827 60.0 7.57 2.29 34.54 3.66 F
1350 1386 0.542333 TGGTGTTTGTGGACCGAAGA 59.458 50.0 0.00 0.00 34.69 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 1816 1.880027 ACATTTCAAGGAACTCACCGC 59.120 47.619 0.00 0.0 38.49 5.68 R
2329 2378 2.095466 CGTGCGGACATTTGTGGTAATT 60.095 45.455 8.11 0.0 0.00 1.40 R
2974 3245 1.187087 ACGGCCCAACAAAAGAAACA 58.813 45.000 0.00 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 8.634475 AAAAATACAACTGCTGAAACTCTTTC 57.366 30.769 0.00 0.00 40.08 2.62
273 308 0.602905 CCAACGTCACCTTGAGGGAC 60.603 60.000 1.54 5.49 36.65 4.46
331 366 0.969149 TCTGTGATCTGCCTTGACGT 59.031 50.000 0.00 0.00 0.00 4.34
352 387 3.390521 AGGCGGCGAATCAGTCCA 61.391 61.111 12.98 0.00 0.00 4.02
417 452 1.171308 CTTTCCTCCGGTGTCTACGA 58.829 55.000 0.00 0.00 0.00 3.43
439 474 1.132643 GACGACCACTACTTCTGCGAT 59.867 52.381 0.00 0.00 0.00 4.58
467 502 0.038251 GAGTGACGTGGTCTGCATCA 60.038 55.000 0.00 0.00 33.15 3.07
491 526 7.665559 TCAAGGGTTATTACAATGGCATAGATC 59.334 37.037 0.00 0.00 0.00 2.75
567 603 1.375908 GACGGCAGTGAGGATGCAA 60.376 57.895 0.00 0.00 45.68 4.08
579 615 1.202758 AGGATGCAAGGTTGAACGTGA 60.203 47.619 0.00 0.00 0.00 4.35
580 616 1.606668 GGATGCAAGGTTGAACGTGAA 59.393 47.619 0.00 0.00 0.00 3.18
581 617 2.034053 GGATGCAAGGTTGAACGTGAAA 59.966 45.455 0.00 0.00 0.00 2.69
582 618 2.842208 TGCAAGGTTGAACGTGAAAG 57.158 45.000 0.00 0.00 0.00 2.62
583 619 1.202245 TGCAAGGTTGAACGTGAAAGC 60.202 47.619 0.00 0.00 0.00 3.51
584 620 1.065551 GCAAGGTTGAACGTGAAAGCT 59.934 47.619 8.85 8.85 35.73 3.74
585 621 2.719798 CAAGGTTGAACGTGAAAGCTG 58.280 47.619 13.90 6.77 34.52 4.24
586 622 2.325583 AGGTTGAACGTGAAAGCTGA 57.674 45.000 12.77 0.00 33.10 4.26
587 623 1.940613 AGGTTGAACGTGAAAGCTGAC 59.059 47.619 12.77 0.00 33.10 3.51
588 624 1.940613 GGTTGAACGTGAAAGCTGACT 59.059 47.619 0.00 0.00 0.00 3.41
589 625 3.128349 GGTTGAACGTGAAAGCTGACTA 58.872 45.455 0.00 0.00 0.00 2.59
590 626 3.558418 GGTTGAACGTGAAAGCTGACTAA 59.442 43.478 0.00 0.00 0.00 2.24
591 627 4.213482 GGTTGAACGTGAAAGCTGACTAAT 59.787 41.667 0.00 0.00 0.00 1.73
592 628 5.277828 GGTTGAACGTGAAAGCTGACTAATT 60.278 40.000 0.00 0.00 0.00 1.40
593 629 5.591643 TGAACGTGAAAGCTGACTAATTC 57.408 39.130 0.00 0.00 0.00 2.17
594 630 5.053811 TGAACGTGAAAGCTGACTAATTCA 58.946 37.500 0.00 0.00 0.00 2.57
595 631 5.700832 TGAACGTGAAAGCTGACTAATTCAT 59.299 36.000 0.00 0.00 34.62 2.57
596 632 6.204688 TGAACGTGAAAGCTGACTAATTCATT 59.795 34.615 0.00 0.00 34.62 2.57
597 633 5.931532 ACGTGAAAGCTGACTAATTCATTG 58.068 37.500 0.00 0.02 34.62 2.82
598 634 4.790140 CGTGAAAGCTGACTAATTCATTGC 59.210 41.667 0.00 0.00 34.62 3.56
599 635 5.617529 CGTGAAAGCTGACTAATTCATTGCA 60.618 40.000 0.00 0.00 34.62 4.08
600 636 6.151691 GTGAAAGCTGACTAATTCATTGCAA 58.848 36.000 0.00 0.00 34.62 4.08
601 637 6.642131 GTGAAAGCTGACTAATTCATTGCAAA 59.358 34.615 1.71 0.00 34.62 3.68
602 638 6.864685 TGAAAGCTGACTAATTCATTGCAAAG 59.135 34.615 1.71 0.00 32.17 2.77
603 639 5.972107 AGCTGACTAATTCATTGCAAAGT 57.028 34.783 1.71 0.03 32.17 2.66
604 640 6.336842 AGCTGACTAATTCATTGCAAAGTT 57.663 33.333 1.71 0.00 32.17 2.66
605 641 6.385033 AGCTGACTAATTCATTGCAAAGTTC 58.615 36.000 1.71 0.00 32.17 3.01
606 642 6.208204 AGCTGACTAATTCATTGCAAAGTTCT 59.792 34.615 1.71 0.00 32.17 3.01
607 643 7.391554 AGCTGACTAATTCATTGCAAAGTTCTA 59.608 33.333 1.71 0.00 32.17 2.10
608 644 7.483059 GCTGACTAATTCATTGCAAAGTTCTAC 59.517 37.037 1.71 0.00 32.17 2.59
609 645 7.518161 TGACTAATTCATTGCAAAGTTCTACG 58.482 34.615 1.71 0.00 0.00 3.51
610 646 6.314784 ACTAATTCATTGCAAAGTTCTACGC 58.685 36.000 1.71 0.00 0.00 4.42
611 647 4.764679 ATTCATTGCAAAGTTCTACGCA 57.235 36.364 1.71 0.00 0.00 5.24
612 648 4.764679 TTCATTGCAAAGTTCTACGCAT 57.235 36.364 1.71 0.00 33.71 4.73
613 649 5.871465 TTCATTGCAAAGTTCTACGCATA 57.129 34.783 1.71 0.00 33.71 3.14
614 650 5.469373 TCATTGCAAAGTTCTACGCATAG 57.531 39.130 1.71 0.00 33.71 2.23
615 651 5.175127 TCATTGCAAAGTTCTACGCATAGA 58.825 37.500 1.71 0.00 35.53 1.98
616 652 5.817296 TCATTGCAAAGTTCTACGCATAGAT 59.183 36.000 1.71 0.00 37.28 1.98
617 653 5.469373 TTGCAAAGTTCTACGCATAGATG 57.531 39.130 0.00 0.00 37.28 2.90
618 654 4.754322 TGCAAAGTTCTACGCATAGATGA 58.246 39.130 0.00 0.00 37.28 2.92
619 655 5.175127 TGCAAAGTTCTACGCATAGATGAA 58.825 37.500 0.00 0.00 37.28 2.57
620 656 5.641636 TGCAAAGTTCTACGCATAGATGAAA 59.358 36.000 0.00 0.00 37.28 2.69
621 657 5.960105 GCAAAGTTCTACGCATAGATGAAAC 59.040 40.000 0.00 0.00 37.28 2.78
622 658 6.183360 GCAAAGTTCTACGCATAGATGAAACT 60.183 38.462 0.00 0.00 37.28 2.66
623 659 6.893958 AAGTTCTACGCATAGATGAAACTG 57.106 37.500 0.00 0.00 37.28 3.16
624 660 4.806247 AGTTCTACGCATAGATGAAACTGC 59.194 41.667 0.00 0.00 37.28 4.40
625 661 4.385358 TCTACGCATAGATGAAACTGCA 57.615 40.909 0.00 0.00 32.16 4.41
626 662 4.754322 TCTACGCATAGATGAAACTGCAA 58.246 39.130 0.00 0.00 32.16 4.08
627 663 3.747099 ACGCATAGATGAAACTGCAAC 57.253 42.857 0.00 0.00 34.29 4.17
628 664 3.073678 ACGCATAGATGAAACTGCAACA 58.926 40.909 0.00 0.00 34.29 3.33
629 665 3.125829 ACGCATAGATGAAACTGCAACAG 59.874 43.478 0.00 0.00 37.52 3.16
630 666 3.432782 GCATAGATGAAACTGCAACAGC 58.567 45.455 0.00 0.00 34.37 4.40
631 667 3.119743 GCATAGATGAAACTGCAACAGCA 60.120 43.478 0.00 0.00 34.37 4.41
632 668 4.616604 GCATAGATGAAACTGCAACAGCAA 60.617 41.667 0.00 0.00 37.91 3.91
633 669 5.647589 CATAGATGAAACTGCAACAGCAAT 58.352 37.500 0.00 0.00 37.91 3.56
634 670 4.170292 AGATGAAACTGCAACAGCAATC 57.830 40.909 0.00 0.00 37.91 2.67
635 671 3.570975 AGATGAAACTGCAACAGCAATCA 59.429 39.130 0.00 0.00 37.91 2.57
636 672 4.219944 AGATGAAACTGCAACAGCAATCAT 59.780 37.500 10.74 10.74 38.12 2.45
637 673 3.904571 TGAAACTGCAACAGCAATCATC 58.095 40.909 0.00 0.00 37.91 2.92
638 674 2.624316 AACTGCAACAGCAATCATCG 57.376 45.000 0.00 0.00 37.91 3.84
639 675 1.527034 ACTGCAACAGCAATCATCGT 58.473 45.000 0.00 0.00 37.91 3.73
640 676 1.881973 ACTGCAACAGCAATCATCGTT 59.118 42.857 0.00 0.00 37.91 3.85
641 677 2.247637 CTGCAACAGCAATCATCGTTG 58.752 47.619 0.00 0.00 41.28 4.10
642 678 1.068402 TGCAACAGCAATCATCGTTGG 60.068 47.619 0.00 0.00 39.27 3.77
643 679 1.199789 GCAACAGCAATCATCGTTGGA 59.800 47.619 0.00 0.00 39.27 3.53
644 680 2.730090 GCAACAGCAATCATCGTTGGAG 60.730 50.000 0.00 0.00 39.27 3.86
645 681 1.089920 ACAGCAATCATCGTTGGAGC 58.910 50.000 0.00 0.00 0.00 4.70
646 682 1.089112 CAGCAATCATCGTTGGAGCA 58.911 50.000 7.91 0.00 0.00 4.26
647 683 1.674441 CAGCAATCATCGTTGGAGCAT 59.326 47.619 7.91 0.00 0.00 3.79
648 684 1.945394 AGCAATCATCGTTGGAGCATC 59.055 47.619 7.91 0.00 0.00 3.91
649 685 1.945394 GCAATCATCGTTGGAGCATCT 59.055 47.619 0.00 0.00 33.73 2.90
650 686 2.286831 GCAATCATCGTTGGAGCATCTG 60.287 50.000 0.00 0.00 33.73 2.90
651 687 1.590932 ATCATCGTTGGAGCATCTGC 58.409 50.000 0.00 0.00 42.49 4.26
665 701 4.592485 GCATCTGCTAGGTACATAGTGT 57.408 45.455 15.45 0.00 38.21 3.55
666 702 4.950050 GCATCTGCTAGGTACATAGTGTT 58.050 43.478 15.45 2.84 38.21 3.32
667 703 5.360591 GCATCTGCTAGGTACATAGTGTTT 58.639 41.667 15.45 0.00 38.21 2.83
668 704 6.513180 GCATCTGCTAGGTACATAGTGTTTA 58.487 40.000 15.45 0.00 38.21 2.01
669 705 6.642950 GCATCTGCTAGGTACATAGTGTTTAG 59.357 42.308 15.45 7.28 38.21 1.85
670 706 7.470147 GCATCTGCTAGGTACATAGTGTTTAGA 60.470 40.741 15.45 11.42 38.21 2.10
671 707 8.580720 CATCTGCTAGGTACATAGTGTTTAGAT 58.419 37.037 15.45 12.80 0.00 1.98
672 708 8.534954 TCTGCTAGGTACATAGTGTTTAGATT 57.465 34.615 15.45 0.00 0.00 2.40
673 709 8.414003 TCTGCTAGGTACATAGTGTTTAGATTG 58.586 37.037 15.45 0.00 0.00 2.67
674 710 8.074613 TGCTAGGTACATAGTGTTTAGATTGT 57.925 34.615 15.45 0.00 0.00 2.71
675 711 8.195436 TGCTAGGTACATAGTGTTTAGATTGTC 58.805 37.037 15.45 0.00 0.00 3.18
676 712 8.414778 GCTAGGTACATAGTGTTTAGATTGTCT 58.585 37.037 15.45 0.00 0.00 3.41
677 713 9.737427 CTAGGTACATAGTGTTTAGATTGTCTG 57.263 37.037 6.39 0.00 0.00 3.51
678 714 8.135382 AGGTACATAGTGTTTAGATTGTCTGT 57.865 34.615 0.00 0.00 0.00 3.41
679 715 8.594550 AGGTACATAGTGTTTAGATTGTCTGTT 58.405 33.333 0.00 0.00 0.00 3.16
680 716 9.216117 GGTACATAGTGTTTAGATTGTCTGTTT 57.784 33.333 0.00 0.00 0.00 2.83
694 730 9.520204 AGATTGTCTGTTTATTTGTTGAGTTTG 57.480 29.630 0.00 0.00 0.00 2.93
695 731 9.515020 GATTGTCTGTTTATTTGTTGAGTTTGA 57.485 29.630 0.00 0.00 0.00 2.69
697 733 9.868277 TTGTCTGTTTATTTGTTGAGTTTGATT 57.132 25.926 0.00 0.00 0.00 2.57
698 734 9.515020 TGTCTGTTTATTTGTTGAGTTTGATTC 57.485 29.630 0.00 0.00 0.00 2.52
699 735 9.515020 GTCTGTTTATTTGTTGAGTTTGATTCA 57.485 29.630 0.00 0.00 0.00 2.57
700 736 9.515020 TCTGTTTATTTGTTGAGTTTGATTCAC 57.485 29.630 0.00 0.00 0.00 3.18
701 737 9.520204 CTGTTTATTTGTTGAGTTTGATTCACT 57.480 29.630 0.00 0.00 0.00 3.41
702 738 9.868277 TGTTTATTTGTTGAGTTTGATTCACTT 57.132 25.926 0.00 0.00 0.00 3.16
706 742 7.593875 TTTGTTGAGTTTGATTCACTTTTGG 57.406 32.000 0.00 0.00 0.00 3.28
707 743 6.522625 TGTTGAGTTTGATTCACTTTTGGA 57.477 33.333 0.00 0.00 0.00 3.53
708 744 6.563422 TGTTGAGTTTGATTCACTTTTGGAG 58.437 36.000 0.00 0.00 0.00 3.86
709 745 6.376864 TGTTGAGTTTGATTCACTTTTGGAGA 59.623 34.615 0.00 0.00 0.00 3.71
710 746 7.093988 TGTTGAGTTTGATTCACTTTTGGAGAA 60.094 33.333 0.00 0.00 0.00 2.87
711 747 7.031226 TGAGTTTGATTCACTTTTGGAGAAG 57.969 36.000 0.00 0.00 0.00 2.85
712 748 5.836347 AGTTTGATTCACTTTTGGAGAAGC 58.164 37.500 0.00 0.00 0.00 3.86
713 749 4.853924 TTGATTCACTTTTGGAGAAGCC 57.146 40.909 0.00 0.00 37.10 4.35
722 758 2.777536 TGGAGAAGCCACTGGATGT 58.222 52.632 0.00 0.00 43.33 3.06
723 759 0.325933 TGGAGAAGCCACTGGATGTG 59.674 55.000 0.00 0.00 43.33 3.21
724 760 0.326264 GGAGAAGCCACTGGATGTGT 59.674 55.000 0.00 0.00 44.81 3.72
725 761 1.555075 GGAGAAGCCACTGGATGTGTA 59.445 52.381 0.00 0.00 44.81 2.90
726 762 2.027192 GGAGAAGCCACTGGATGTGTAA 60.027 50.000 0.00 0.00 44.81 2.41
727 763 3.370953 GGAGAAGCCACTGGATGTGTAAT 60.371 47.826 0.00 0.00 44.81 1.89
728 764 4.265073 GAGAAGCCACTGGATGTGTAATT 58.735 43.478 0.00 0.00 44.81 1.40
729 765 5.428253 GAGAAGCCACTGGATGTGTAATTA 58.572 41.667 0.00 0.00 44.81 1.40
730 766 6.006275 AGAAGCCACTGGATGTGTAATTAT 57.994 37.500 0.00 0.00 44.81 1.28
731 767 7.136822 AGAAGCCACTGGATGTGTAATTATA 57.863 36.000 0.00 0.00 44.81 0.98
732 768 6.992715 AGAAGCCACTGGATGTGTAATTATAC 59.007 38.462 5.47 5.47 44.81 1.47
733 769 5.621193 AGCCACTGGATGTGTAATTATACC 58.379 41.667 9.57 0.00 44.81 2.73
734 770 5.131977 AGCCACTGGATGTGTAATTATACCA 59.868 40.000 9.57 0.77 44.81 3.25
735 771 6.003950 GCCACTGGATGTGTAATTATACCAT 58.996 40.000 9.57 4.06 44.81 3.55
736 772 6.072508 GCCACTGGATGTGTAATTATACCATG 60.073 42.308 9.57 0.00 44.81 3.66
737 773 6.998074 CCACTGGATGTGTAATTATACCATGT 59.002 38.462 9.57 0.50 44.81 3.21
738 774 8.154203 CCACTGGATGTGTAATTATACCATGTA 58.846 37.037 9.57 0.00 44.81 2.29
739 775 9.554395 CACTGGATGTGTAATTATACCATGTAA 57.446 33.333 9.57 0.00 41.53 2.41
740 776 9.555727 ACTGGATGTGTAATTATACCATGTAAC 57.444 33.333 9.57 0.00 0.00 2.50
741 777 8.911918 TGGATGTGTAATTATACCATGTAACC 57.088 34.615 9.57 0.75 0.00 2.85
742 778 8.495260 TGGATGTGTAATTATACCATGTAACCA 58.505 33.333 9.57 3.05 0.00 3.67
743 779 9.344772 GGATGTGTAATTATACCATGTAACCAA 57.655 33.333 9.57 0.00 0.00 3.67
745 781 9.914834 ATGTGTAATTATACCATGTAACCAACT 57.085 29.630 9.57 0.00 0.00 3.16
755 791 9.778741 ATACCATGTAACCAACTATAATGACTG 57.221 33.333 0.00 0.00 0.00 3.51
756 792 6.542370 ACCATGTAACCAACTATAATGACTGC 59.458 38.462 0.00 0.00 0.00 4.40
757 793 6.767902 CCATGTAACCAACTATAATGACTGCT 59.232 38.462 0.00 0.00 0.00 4.24
758 794 7.254898 CCATGTAACCAACTATAATGACTGCTG 60.255 40.741 0.00 0.00 0.00 4.41
759 795 6.941857 TGTAACCAACTATAATGACTGCTGA 58.058 36.000 0.00 0.00 0.00 4.26
760 796 6.816640 TGTAACCAACTATAATGACTGCTGAC 59.183 38.462 0.00 0.00 0.00 3.51
761 797 5.683876 ACCAACTATAATGACTGCTGACT 57.316 39.130 0.00 0.00 0.00 3.41
762 798 6.054860 ACCAACTATAATGACTGCTGACTT 57.945 37.500 0.00 0.00 0.00 3.01
763 799 6.476378 ACCAACTATAATGACTGCTGACTTT 58.524 36.000 0.00 0.00 0.00 2.66
764 800 7.620880 ACCAACTATAATGACTGCTGACTTTA 58.379 34.615 0.00 0.96 0.00 1.85
765 801 8.100791 ACCAACTATAATGACTGCTGACTTTAA 58.899 33.333 0.00 0.00 0.00 1.52
766 802 9.113838 CCAACTATAATGACTGCTGACTTTAAT 57.886 33.333 0.00 0.00 0.00 1.40
768 804 9.890629 AACTATAATGACTGCTGACTTTAATCA 57.109 29.630 0.00 0.00 0.00 2.57
769 805 9.890629 ACTATAATGACTGCTGACTTTAATCAA 57.109 29.630 0.00 0.00 0.00 2.57
771 807 8.798859 ATAATGACTGCTGACTTTAATCAACT 57.201 30.769 0.00 0.00 0.00 3.16
772 808 7.516198 AATGACTGCTGACTTTAATCAACTT 57.484 32.000 0.00 0.00 0.00 2.66
773 809 6.942532 TGACTGCTGACTTTAATCAACTTT 57.057 33.333 0.00 0.00 0.00 2.66
774 810 7.333528 TGACTGCTGACTTTAATCAACTTTT 57.666 32.000 0.00 0.00 0.00 2.27
775 811 8.445275 TGACTGCTGACTTTAATCAACTTTTA 57.555 30.769 0.00 0.00 0.00 1.52
776 812 9.066892 TGACTGCTGACTTTAATCAACTTTTAT 57.933 29.630 0.00 0.00 0.00 1.40
777 813 9.548208 GACTGCTGACTTTAATCAACTTTTATC 57.452 33.333 0.00 0.00 0.00 1.75
778 814 9.289782 ACTGCTGACTTTAATCAACTTTTATCT 57.710 29.630 0.00 0.00 0.00 1.98
779 815 9.766277 CTGCTGACTTTAATCAACTTTTATCTC 57.234 33.333 0.00 0.00 0.00 2.75
780 816 9.507329 TGCTGACTTTAATCAACTTTTATCTCT 57.493 29.630 0.00 0.00 0.00 3.10
795 831 9.220767 ACTTTTATCTCTATAATGAATTCCGCC 57.779 33.333 2.27 0.00 0.00 6.13
796 832 8.561738 TTTTATCTCTATAATGAATTCCGCCC 57.438 34.615 2.27 0.00 0.00 6.13
797 833 7.496346 TTATCTCTATAATGAATTCCGCCCT 57.504 36.000 2.27 0.00 0.00 5.19
798 834 8.603898 TTATCTCTATAATGAATTCCGCCCTA 57.396 34.615 2.27 0.00 0.00 3.53
799 835 6.282199 TCTCTATAATGAATTCCGCCCTAC 57.718 41.667 2.27 0.00 0.00 3.18
800 836 5.778241 TCTCTATAATGAATTCCGCCCTACA 59.222 40.000 2.27 0.00 0.00 2.74
801 837 6.440647 TCTCTATAATGAATTCCGCCCTACAT 59.559 38.462 2.27 0.00 0.00 2.29
802 838 7.016153 TCTATAATGAATTCCGCCCTACATT 57.984 36.000 2.27 0.00 33.56 2.71
803 839 5.964958 ATAATGAATTCCGCCCTACATTG 57.035 39.130 2.27 0.00 31.85 2.82
804 840 1.388547 TGAATTCCGCCCTACATTGC 58.611 50.000 2.27 0.00 0.00 3.56
805 841 1.064758 TGAATTCCGCCCTACATTGCT 60.065 47.619 2.27 0.00 0.00 3.91
806 842 1.334869 GAATTCCGCCCTACATTGCTG 59.665 52.381 0.00 0.00 0.00 4.41
807 843 0.255890 ATTCCGCCCTACATTGCTGT 59.744 50.000 0.00 0.00 39.49 4.40
808 844 0.392461 TTCCGCCCTACATTGCTGTC 60.392 55.000 0.00 0.00 36.79 3.51
809 845 1.078497 CCGCCCTACATTGCTGTCA 60.078 57.895 0.00 0.00 36.79 3.58
810 846 0.464373 CCGCCCTACATTGCTGTCAT 60.464 55.000 0.00 0.00 36.79 3.06
811 847 1.382522 CGCCCTACATTGCTGTCATT 58.617 50.000 0.00 0.00 36.79 2.57
812 848 1.745087 CGCCCTACATTGCTGTCATTT 59.255 47.619 0.00 0.00 36.79 2.32
813 849 2.942376 CGCCCTACATTGCTGTCATTTA 59.058 45.455 0.00 0.00 36.79 1.40
814 850 3.565482 CGCCCTACATTGCTGTCATTTAT 59.435 43.478 0.00 0.00 36.79 1.40
815 851 4.555313 CGCCCTACATTGCTGTCATTTATG 60.555 45.833 0.00 0.00 36.79 1.90
816 852 4.794003 GCCCTACATTGCTGTCATTTATGC 60.794 45.833 0.00 0.00 36.79 3.14
817 853 4.338964 CCCTACATTGCTGTCATTTATGCA 59.661 41.667 0.00 0.00 36.79 3.96
818 854 5.506815 CCCTACATTGCTGTCATTTATGCAG 60.507 44.000 0.00 8.73 36.79 4.41
819 855 5.297527 CCTACATTGCTGTCATTTATGCAGA 59.702 40.000 14.25 0.00 36.79 4.26
820 856 5.648178 ACATTGCTGTCATTTATGCAGAA 57.352 34.783 14.25 0.00 36.75 3.02
821 857 5.647589 ACATTGCTGTCATTTATGCAGAAG 58.352 37.500 14.25 0.00 36.75 2.85
822 858 4.707030 TTGCTGTCATTTATGCAGAAGG 57.293 40.909 14.25 0.00 36.75 3.46
823 859 2.424601 TGCTGTCATTTATGCAGAAGGC 59.575 45.455 14.25 0.00 45.13 4.35
824 860 2.686915 GCTGTCATTTATGCAGAAGGCT 59.313 45.455 14.25 0.00 45.15 4.58
825 861 3.243002 GCTGTCATTTATGCAGAAGGCTC 60.243 47.826 14.25 0.00 45.15 4.70
826 862 4.197750 CTGTCATTTATGCAGAAGGCTCT 58.802 43.478 0.00 0.00 45.15 4.09
827 863 4.194640 TGTCATTTATGCAGAAGGCTCTC 58.805 43.478 0.00 0.00 45.15 3.20
828 864 4.194640 GTCATTTATGCAGAAGGCTCTCA 58.805 43.478 0.00 0.00 45.15 3.27
829 865 4.272991 GTCATTTATGCAGAAGGCTCTCAG 59.727 45.833 0.00 0.00 45.15 3.35
830 866 3.988976 TTTATGCAGAAGGCTCTCAGT 57.011 42.857 0.00 0.00 45.15 3.41
831 867 3.988976 TTATGCAGAAGGCTCTCAGTT 57.011 42.857 0.00 0.00 45.15 3.16
832 868 2.110901 ATGCAGAAGGCTCTCAGTTG 57.889 50.000 0.00 0.00 45.15 3.16
833 869 0.761187 TGCAGAAGGCTCTCAGTTGT 59.239 50.000 0.00 0.00 45.15 3.32
834 870 1.155042 GCAGAAGGCTCTCAGTTGTG 58.845 55.000 0.00 0.00 40.25 3.33
835 871 1.542108 GCAGAAGGCTCTCAGTTGTGT 60.542 52.381 0.00 0.00 40.25 3.72
836 872 2.289072 GCAGAAGGCTCTCAGTTGTGTA 60.289 50.000 0.00 0.00 40.25 2.90
837 873 3.618507 GCAGAAGGCTCTCAGTTGTGTAT 60.619 47.826 0.00 0.00 40.25 2.29
838 874 4.382040 GCAGAAGGCTCTCAGTTGTGTATA 60.382 45.833 0.00 0.00 40.25 1.47
839 875 5.105752 CAGAAGGCTCTCAGTTGTGTATAC 58.894 45.833 0.00 0.00 0.00 1.47
840 876 4.772624 AGAAGGCTCTCAGTTGTGTATACA 59.227 41.667 0.08 0.08 34.31 2.29
841 877 4.457834 AGGCTCTCAGTTGTGTATACAC 57.542 45.455 25.99 25.99 46.59 2.90
855 891 6.721571 GTGTATACACATGTTGTAGCAACT 57.278 37.500 27.37 0.00 44.14 3.16
856 892 7.821595 GTGTATACACATGTTGTAGCAACTA 57.178 36.000 27.37 1.35 44.14 2.24
857 893 7.895870 GTGTATACACATGTTGTAGCAACTAG 58.104 38.462 27.37 7.76 44.14 2.57
858 894 7.758076 GTGTATACACATGTTGTAGCAACTAGA 59.242 37.037 27.37 0.00 44.14 2.43
859 895 7.973944 TGTATACACATGTTGTAGCAACTAGAG 59.026 37.037 0.08 6.79 44.14 2.43
860 896 5.468540 ACACATGTTGTAGCAACTAGAGA 57.531 39.130 12.36 0.00 36.32 3.10
861 897 5.853936 ACACATGTTGTAGCAACTAGAGAA 58.146 37.500 12.36 0.00 36.32 2.87
862 898 6.288294 ACACATGTTGTAGCAACTAGAGAAA 58.712 36.000 12.36 0.00 36.32 2.52
863 899 6.765989 ACACATGTTGTAGCAACTAGAGAAAA 59.234 34.615 12.36 0.00 36.32 2.29
864 900 7.282224 ACACATGTTGTAGCAACTAGAGAAAAA 59.718 33.333 12.36 0.00 36.32 1.94
865 901 7.800380 CACATGTTGTAGCAACTAGAGAAAAAG 59.200 37.037 12.36 0.00 0.00 2.27
866 902 7.499232 ACATGTTGTAGCAACTAGAGAAAAAGT 59.501 33.333 12.36 0.00 0.00 2.66
867 903 7.246674 TGTTGTAGCAACTAGAGAAAAAGTG 57.753 36.000 12.36 0.00 0.00 3.16
868 904 5.924475 TGTAGCAACTAGAGAAAAAGTGC 57.076 39.130 0.00 0.00 0.00 4.40
869 905 5.611374 TGTAGCAACTAGAGAAAAAGTGCT 58.389 37.500 0.00 0.00 35.62 4.40
870 906 5.696724 TGTAGCAACTAGAGAAAAAGTGCTC 59.303 40.000 0.00 0.00 34.34 4.26
871 907 4.068599 AGCAACTAGAGAAAAAGTGCTCC 58.931 43.478 0.00 0.00 29.84 4.70
872 908 4.068599 GCAACTAGAGAAAAAGTGCTCCT 58.931 43.478 0.00 0.00 0.00 3.69
873 909 4.083590 GCAACTAGAGAAAAAGTGCTCCTG 60.084 45.833 0.00 0.00 0.00 3.86
874 910 3.669536 ACTAGAGAAAAAGTGCTCCTGC 58.330 45.455 0.00 0.00 40.20 4.85
888 924 4.676849 GCTCCTGCAACTAGAGAAAAAG 57.323 45.455 0.00 0.00 39.41 2.27
889 925 4.068599 GCTCCTGCAACTAGAGAAAAAGT 58.931 43.478 0.00 0.00 39.41 2.66
890 926 4.083590 GCTCCTGCAACTAGAGAAAAAGTG 60.084 45.833 0.00 0.00 39.41 3.16
891 927 3.815401 TCCTGCAACTAGAGAAAAAGTGC 59.185 43.478 0.00 0.00 0.00 4.40
892 928 3.817647 CCTGCAACTAGAGAAAAAGTGCT 59.182 43.478 0.00 0.00 0.00 4.40
893 929 4.083590 CCTGCAACTAGAGAAAAAGTGCTC 60.084 45.833 0.00 0.00 0.00 4.26
894 930 3.494626 TGCAACTAGAGAAAAAGTGCTCG 59.505 43.478 0.00 0.00 36.29 5.03
895 931 3.120511 GCAACTAGAGAAAAAGTGCTCGG 60.121 47.826 0.00 0.00 36.29 4.63
896 932 4.307432 CAACTAGAGAAAAAGTGCTCGGA 58.693 43.478 0.00 0.00 36.29 4.55
897 933 4.602340 ACTAGAGAAAAAGTGCTCGGAA 57.398 40.909 0.00 0.00 36.29 4.30
898 934 4.561105 ACTAGAGAAAAAGTGCTCGGAAG 58.439 43.478 0.00 0.00 36.29 3.46
899 935 2.772287 AGAGAAAAAGTGCTCGGAAGG 58.228 47.619 0.00 0.00 36.29 3.46
900 936 2.368875 AGAGAAAAAGTGCTCGGAAGGA 59.631 45.455 0.00 0.00 36.29 3.36
901 937 2.739379 GAGAAAAAGTGCTCGGAAGGAG 59.261 50.000 0.00 0.00 46.06 3.69
908 944 2.185350 CTCGGAAGGAGCGCATGT 59.815 61.111 11.47 0.00 35.63 3.21
909 945 1.880340 CTCGGAAGGAGCGCATGTC 60.880 63.158 11.47 0.00 35.63 3.06
910 946 2.185350 CGGAAGGAGCGCATGTCT 59.815 61.111 11.47 0.00 0.00 3.41
911 947 1.035385 TCGGAAGGAGCGCATGTCTA 61.035 55.000 11.47 0.00 0.00 2.59
912 948 0.872021 CGGAAGGAGCGCATGTCTAC 60.872 60.000 11.47 0.00 0.00 2.59
913 949 0.530870 GGAAGGAGCGCATGTCTACC 60.531 60.000 11.47 0.00 0.00 3.18
914 950 0.461961 GAAGGAGCGCATGTCTACCT 59.538 55.000 11.47 3.42 0.00 3.08
915 951 0.176680 AAGGAGCGCATGTCTACCTG 59.823 55.000 11.47 0.00 0.00 4.00
916 952 1.227380 GGAGCGCATGTCTACCTGG 60.227 63.158 11.47 0.00 0.00 4.45
917 953 1.517832 GAGCGCATGTCTACCTGGT 59.482 57.895 11.47 4.05 0.00 4.00
918 954 0.744874 GAGCGCATGTCTACCTGGTA 59.255 55.000 11.47 6.36 0.00 3.25
919 955 0.460311 AGCGCATGTCTACCTGGTAC 59.540 55.000 11.47 0.00 0.00 3.34
920 956 0.529992 GCGCATGTCTACCTGGTACC 60.530 60.000 4.43 4.43 0.00 3.34
921 957 0.248907 CGCATGTCTACCTGGTACCG 60.249 60.000 7.57 1.95 0.00 4.02
922 958 0.529992 GCATGTCTACCTGGTACCGC 60.530 60.000 7.57 0.00 0.00 5.68
923 959 0.821517 CATGTCTACCTGGTACCGCA 59.178 55.000 7.57 2.86 0.00 5.69
924 960 0.822164 ATGTCTACCTGGTACCGCAC 59.178 55.000 7.57 0.00 0.00 5.34
925 961 0.540133 TGTCTACCTGGTACCGCACA 60.540 55.000 7.57 1.23 0.00 4.57
926 962 0.172803 GTCTACCTGGTACCGCACAG 59.827 60.000 7.57 2.29 34.54 3.66
930 966 3.377656 CTGGTACCGCACAGGAGT 58.622 61.111 7.57 0.00 45.00 3.85
939 975 2.740055 CACAGGAGTGCGTCAGGC 60.740 66.667 0.00 0.00 39.21 4.85
968 1004 4.715523 GGCACGCCCCAACTGCTA 62.716 66.667 0.00 0.00 0.00 3.49
969 1005 3.127533 GCACGCCCCAACTGCTAG 61.128 66.667 0.00 0.00 0.00 3.42
998 1034 1.421268 CAATCCTGCCTATAGCCACCA 59.579 52.381 0.00 0.00 42.71 4.17
999 1035 1.059913 ATCCTGCCTATAGCCACCAC 58.940 55.000 0.00 0.00 42.71 4.16
1045 1081 1.608336 ACCACCACGCCTGCTACTA 60.608 57.895 0.00 0.00 0.00 1.82
1108 1144 1.022735 GACTATCCAGCGAACGGAGA 58.977 55.000 0.00 0.00 35.56 3.71
1251 1287 0.604578 ATGATGGCACTTGCACCAAC 59.395 50.000 3.15 0.00 44.36 3.77
1350 1386 0.542333 TGGTGTTTGTGGACCGAAGA 59.458 50.000 0.00 0.00 34.69 2.87
1397 1433 6.116711 TGGCCAGTGAGTGTAAATTTAGTA 57.883 37.500 0.00 0.00 0.00 1.82
1535 1571 8.926710 CGACTAAAATAGTTTGAACTCTGTCAT 58.073 33.333 0.00 0.00 39.59 3.06
1551 1587 1.401905 GTCATCACAAAATCCGCCTCC 59.598 52.381 0.00 0.00 0.00 4.30
1567 1603 4.414852 CGCCTCCATTAATTTGTCAACTG 58.585 43.478 0.00 0.00 0.00 3.16
1771 1816 3.745458 GTGTCTCTCCTTCTCAAAAGCAG 59.255 47.826 0.00 0.00 0.00 4.24
1822 1868 7.592903 GTCCTTGCTCTCTTTTAGTCAAATTTG 59.407 37.037 12.15 12.15 0.00 2.32
1978 2024 7.745620 ATAAGTGGAGAATTTCTTGACGTTT 57.254 32.000 0.00 0.00 0.00 3.60
2016 2064 1.819288 CTAGAGTGTGTGACCATCCGT 59.181 52.381 0.00 0.00 0.00 4.69
2079 2127 3.091545 CCAAGCTGGTGGACAACATAAT 58.908 45.455 0.00 0.00 41.65 1.28
2311 2360 4.083271 GGAGAAGCCAATGTCAAGTACAAC 60.083 45.833 0.00 0.00 37.98 3.32
2315 2364 1.199097 CCAATGTCAAGTACAACGCCC 59.801 52.381 0.00 0.00 42.70 6.13
2329 2378 3.244284 ACAACGCCCTAACATCACTAACA 60.244 43.478 0.00 0.00 0.00 2.41
2440 2489 1.415374 GTTTCTTCGTGTGCGCTAGA 58.585 50.000 9.73 0.00 38.14 2.43
2445 2494 2.411748 TCTTCGTGTGCGCTAGAAAATG 59.588 45.455 9.73 0.00 38.14 2.32
2484 2533 1.942677 TACGTGTGTCCACCTGTTTG 58.057 50.000 0.00 0.00 38.41 2.93
2564 2636 8.161425 TGCCAATAAGGGAGGTTATATACTTTC 58.839 37.037 0.00 0.00 38.09 2.62
2632 2705 3.655276 ATCAGCAAGCAGTTTTCTTGG 57.345 42.857 5.10 0.00 40.79 3.61
2664 2737 6.862209 TGCAAAATAAGTCTGTGTCTTTGTT 58.138 32.000 0.00 0.00 0.00 2.83
2670 2743 3.798202 AGTCTGTGTCTTTGTTGAGGTC 58.202 45.455 0.00 0.00 0.00 3.85
2687 2760 3.219281 AGGTCAATTTTACCACGCTTGT 58.781 40.909 8.98 0.00 39.64 3.16
2823 3093 8.744011 CAGAGTTTACGGAATTACTAAATCTCG 58.256 37.037 0.00 0.00 0.00 4.04
2879 3149 2.705658 TGGACCGCTGGATCTAAATCAT 59.294 45.455 1.50 0.00 33.21 2.45
2880 3150 3.244215 TGGACCGCTGGATCTAAATCATC 60.244 47.826 1.50 0.00 33.21 2.92
2881 3151 3.244215 GGACCGCTGGATCTAAATCATCA 60.244 47.826 1.50 0.00 33.21 3.07
2883 3153 5.337571 GGACCGCTGGATCTAAATCATCATA 60.338 44.000 1.50 0.00 33.21 2.15
2884 3154 6.114187 ACCGCTGGATCTAAATCATCATAA 57.886 37.500 1.50 0.00 33.21 1.90
2952 3222 4.471726 CTACGTCGCGCCGTTCCT 62.472 66.667 23.56 0.00 42.00 3.36
2974 3245 2.519302 GTGTGCACTTGTGGGCCT 60.519 61.111 19.41 0.00 0.00 5.19
2992 3263 1.537990 CCTGTTTCTTTTGTTGGGCCG 60.538 52.381 0.00 0.00 0.00 6.13
3053 3324 3.199946 AGTTGAAGGGAGAAGTTGTGTCA 59.800 43.478 0.00 0.00 0.00 3.58
3063 3334 1.037493 AGTTGTGTCACTGGTCGCTA 58.963 50.000 4.27 0.00 0.00 4.26
3213 3484 5.423886 TGGGGTTTTTCAACTTCATGTTTC 58.576 37.500 0.00 0.00 36.63 2.78
3355 3627 1.147817 AGATGGTATGGGGAATTGGCC 59.852 52.381 0.00 0.00 0.00 5.36
3485 3757 3.351740 TGCAACTCCACTCTTGACAAAA 58.648 40.909 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.799432 AAGTGTAAGGGCATTGTACCA 57.201 42.857 0.00 0.00 0.00 3.25
13 14 5.649782 AATCTGAAAGTGTAAGGGCATTG 57.350 39.130 0.00 0.00 33.76 2.82
70 71 7.004555 TCACCTATGTGTCAAAGTAGTCAAT 57.995 36.000 0.00 0.00 43.26 2.57
126 128 0.949397 TACCACCTCGTATAGCGCAG 59.051 55.000 11.47 0.00 41.07 5.18
273 308 1.608717 CTTCTCCTCCCACCCACTCG 61.609 65.000 0.00 0.00 0.00 4.18
302 337 3.689649 GGCAGATCACAGATTTAAACCGT 59.310 43.478 0.00 0.00 0.00 4.83
309 344 3.005554 CGTCAAGGCAGATCACAGATTT 58.994 45.455 0.00 0.00 0.00 2.17
347 382 2.242043 CCTTGCCATTTTGACTGGACT 58.758 47.619 0.00 0.00 35.70 3.85
352 387 2.665165 TGTGACCTTGCCATTTTGACT 58.335 42.857 0.00 0.00 0.00 3.41
417 452 0.240411 GCAGAAGTAGTGGTCGTCGT 59.760 55.000 0.00 0.00 0.00 4.34
439 474 1.363807 CACGTCACTCTCACAGGCA 59.636 57.895 0.00 0.00 0.00 4.75
467 502 7.526041 TGATCTATGCCATTGTAATAACCCTT 58.474 34.615 0.00 0.00 0.00 3.95
551 587 2.110967 CCTTGCATCCTCACTGCCG 61.111 63.158 0.00 0.00 38.89 5.69
555 591 2.508526 GTTCAACCTTGCATCCTCACT 58.491 47.619 0.00 0.00 0.00 3.41
567 603 1.940613 GTCAGCTTTCACGTTCAACCT 59.059 47.619 0.00 0.00 0.00 3.50
579 615 6.752168 ACTTTGCAATGAATTAGTCAGCTTT 58.248 32.000 18.35 0.00 40.43 3.51
580 616 6.336842 ACTTTGCAATGAATTAGTCAGCTT 57.663 33.333 18.35 0.00 40.43 3.74
581 617 5.972107 ACTTTGCAATGAATTAGTCAGCT 57.028 34.783 18.35 0.00 40.43 4.24
582 618 6.385033 AGAACTTTGCAATGAATTAGTCAGC 58.615 36.000 18.35 3.46 40.43 4.26
583 619 7.689812 CGTAGAACTTTGCAATGAATTAGTCAG 59.310 37.037 18.35 2.80 40.43 3.51
584 620 7.518161 CGTAGAACTTTGCAATGAATTAGTCA 58.482 34.615 18.35 0.00 41.67 3.41
585 621 6.466097 GCGTAGAACTTTGCAATGAATTAGTC 59.534 38.462 18.35 4.28 0.00 2.59
586 622 6.072728 TGCGTAGAACTTTGCAATGAATTAGT 60.073 34.615 18.35 6.37 33.80 2.24
587 623 6.314018 TGCGTAGAACTTTGCAATGAATTAG 58.686 36.000 18.35 5.71 33.80 1.73
588 624 6.247727 TGCGTAGAACTTTGCAATGAATTA 57.752 33.333 18.35 5.20 33.80 1.40
589 625 5.119931 TGCGTAGAACTTTGCAATGAATT 57.880 34.783 18.35 3.84 33.80 2.17
590 626 4.764679 TGCGTAGAACTTTGCAATGAAT 57.235 36.364 18.35 7.14 33.80 2.57
591 627 4.764679 ATGCGTAGAACTTTGCAATGAA 57.235 36.364 18.35 0.00 41.22 2.57
592 628 5.175127 TCTATGCGTAGAACTTTGCAATGA 58.825 37.500 18.35 0.00 41.22 2.57
593 629 5.469373 TCTATGCGTAGAACTTTGCAATG 57.531 39.130 13.37 10.58 41.22 2.82
594 630 5.817296 TCATCTATGCGTAGAACTTTGCAAT 59.183 36.000 19.27 0.00 40.21 3.56
595 631 5.175127 TCATCTATGCGTAGAACTTTGCAA 58.825 37.500 19.27 0.00 40.21 4.08
596 632 4.754322 TCATCTATGCGTAGAACTTTGCA 58.246 39.130 19.27 2.11 40.21 4.08
597 633 5.718649 TTCATCTATGCGTAGAACTTTGC 57.281 39.130 19.27 0.00 40.21 3.68
598 634 7.176075 CAGTTTCATCTATGCGTAGAACTTTG 58.824 38.462 19.27 12.83 40.21 2.77
599 635 6.183360 GCAGTTTCATCTATGCGTAGAACTTT 60.183 38.462 19.27 0.28 40.21 2.66
600 636 5.292101 GCAGTTTCATCTATGCGTAGAACTT 59.708 40.000 19.27 0.66 40.21 2.66
601 637 4.806247 GCAGTTTCATCTATGCGTAGAACT 59.194 41.667 19.27 14.56 40.21 3.01
602 638 4.566759 TGCAGTTTCATCTATGCGTAGAAC 59.433 41.667 19.27 12.62 40.21 3.01
603 639 4.754322 TGCAGTTTCATCTATGCGTAGAA 58.246 39.130 19.27 1.41 40.21 2.10
604 640 4.385358 TGCAGTTTCATCTATGCGTAGA 57.615 40.909 17.80 17.80 41.58 2.59
605 641 4.329801 TGTTGCAGTTTCATCTATGCGTAG 59.670 41.667 6.62 6.62 41.58 3.51
606 642 4.249661 TGTTGCAGTTTCATCTATGCGTA 58.750 39.130 0.00 0.00 41.58 4.42
607 643 3.073678 TGTTGCAGTTTCATCTATGCGT 58.926 40.909 0.00 0.00 41.58 5.24
608 644 3.677601 CTGTTGCAGTTTCATCTATGCG 58.322 45.455 0.00 0.00 41.58 4.73
609 645 3.119743 TGCTGTTGCAGTTTCATCTATGC 60.120 43.478 0.00 0.00 45.31 3.14
610 646 4.690184 TGCTGTTGCAGTTTCATCTATG 57.310 40.909 0.00 0.00 45.31 2.23
623 659 1.199789 TCCAACGATGATTGCTGTTGC 59.800 47.619 0.00 0.00 40.17 4.17
624 660 2.730090 GCTCCAACGATGATTGCTGTTG 60.730 50.000 0.00 0.00 40.95 3.33
625 661 1.470098 GCTCCAACGATGATTGCTGTT 59.530 47.619 0.00 0.00 0.00 3.16
626 662 1.089920 GCTCCAACGATGATTGCTGT 58.910 50.000 0.00 0.00 0.00 4.40
627 663 1.089112 TGCTCCAACGATGATTGCTG 58.911 50.000 0.00 0.00 0.00 4.41
628 664 1.945394 GATGCTCCAACGATGATTGCT 59.055 47.619 0.00 0.00 0.00 3.91
629 665 1.945394 AGATGCTCCAACGATGATTGC 59.055 47.619 0.00 0.00 0.00 3.56
630 666 2.286831 GCAGATGCTCCAACGATGATTG 60.287 50.000 0.00 0.00 38.21 2.67
631 667 1.945394 GCAGATGCTCCAACGATGATT 59.055 47.619 0.00 0.00 38.21 2.57
632 668 1.590932 GCAGATGCTCCAACGATGAT 58.409 50.000 0.00 0.00 38.21 2.45
633 669 3.070076 GCAGATGCTCCAACGATGA 57.930 52.632 0.00 0.00 38.21 2.92
644 680 4.592485 ACACTATGTACCTAGCAGATGC 57.408 45.455 5.20 0.00 42.49 3.91
645 681 7.941919 TCTAAACACTATGTACCTAGCAGATG 58.058 38.462 5.20 0.00 0.00 2.90
646 682 8.713708 ATCTAAACACTATGTACCTAGCAGAT 57.286 34.615 5.20 4.05 0.00 2.90
647 683 8.414003 CAATCTAAACACTATGTACCTAGCAGA 58.586 37.037 5.20 2.24 0.00 4.26
648 684 8.198109 ACAATCTAAACACTATGTACCTAGCAG 58.802 37.037 5.20 1.85 0.00 4.24
649 685 8.074613 ACAATCTAAACACTATGTACCTAGCA 57.925 34.615 5.20 0.00 0.00 3.49
650 686 8.414778 AGACAATCTAAACACTATGTACCTAGC 58.585 37.037 5.20 0.00 0.00 3.42
651 687 9.737427 CAGACAATCTAAACACTATGTACCTAG 57.263 37.037 3.85 3.85 0.00 3.02
652 688 9.251440 ACAGACAATCTAAACACTATGTACCTA 57.749 33.333 0.00 0.00 0.00 3.08
653 689 8.135382 ACAGACAATCTAAACACTATGTACCT 57.865 34.615 0.00 0.00 0.00 3.08
654 690 8.773404 AACAGACAATCTAAACACTATGTACC 57.227 34.615 0.00 0.00 0.00 3.34
668 704 9.520204 CAAACTCAACAAATAAACAGACAATCT 57.480 29.630 0.00 0.00 0.00 2.40
669 705 9.515020 TCAAACTCAACAAATAAACAGACAATC 57.485 29.630 0.00 0.00 0.00 2.67
671 707 9.868277 AATCAAACTCAACAAATAAACAGACAA 57.132 25.926 0.00 0.00 0.00 3.18
672 708 9.515020 GAATCAAACTCAACAAATAAACAGACA 57.485 29.630 0.00 0.00 0.00 3.41
673 709 9.515020 TGAATCAAACTCAACAAATAAACAGAC 57.485 29.630 0.00 0.00 0.00 3.51
674 710 9.515020 GTGAATCAAACTCAACAAATAAACAGA 57.485 29.630 0.00 0.00 0.00 3.41
675 711 9.520204 AGTGAATCAAACTCAACAAATAAACAG 57.480 29.630 0.00 0.00 0.00 3.16
676 712 9.868277 AAGTGAATCAAACTCAACAAATAAACA 57.132 25.926 0.00 0.00 0.00 2.83
680 716 9.311916 CCAAAAGTGAATCAAACTCAACAAATA 57.688 29.630 0.00 0.00 0.00 1.40
681 717 8.040132 TCCAAAAGTGAATCAAACTCAACAAAT 58.960 29.630 0.00 0.00 0.00 2.32
682 718 7.382110 TCCAAAAGTGAATCAAACTCAACAAA 58.618 30.769 0.00 0.00 0.00 2.83
683 719 6.929625 TCCAAAAGTGAATCAAACTCAACAA 58.070 32.000 0.00 0.00 0.00 2.83
684 720 6.376864 TCTCCAAAAGTGAATCAAACTCAACA 59.623 34.615 0.00 0.00 0.00 3.33
685 721 6.795399 TCTCCAAAAGTGAATCAAACTCAAC 58.205 36.000 0.00 0.00 0.00 3.18
686 722 7.403312 TTCTCCAAAAGTGAATCAAACTCAA 57.597 32.000 0.00 0.00 0.00 3.02
687 723 6.460123 GCTTCTCCAAAAGTGAATCAAACTCA 60.460 38.462 0.00 0.00 0.00 3.41
688 724 5.917447 GCTTCTCCAAAAGTGAATCAAACTC 59.083 40.000 0.00 0.00 0.00 3.01
689 725 5.221322 GGCTTCTCCAAAAGTGAATCAAACT 60.221 40.000 0.00 0.00 34.01 2.66
690 726 4.984785 GGCTTCTCCAAAAGTGAATCAAAC 59.015 41.667 0.00 0.00 34.01 2.93
691 727 4.648762 TGGCTTCTCCAAAAGTGAATCAAA 59.351 37.500 0.00 0.00 43.21 2.69
692 728 4.214310 TGGCTTCTCCAAAAGTGAATCAA 58.786 39.130 0.00 0.00 43.21 2.57
693 729 3.831323 TGGCTTCTCCAAAAGTGAATCA 58.169 40.909 0.00 0.00 43.21 2.57
704 740 0.325933 CACATCCAGTGGCTTCTCCA 59.674 55.000 3.51 0.00 44.69 3.86
705 741 3.165606 CACATCCAGTGGCTTCTCC 57.834 57.895 3.51 0.00 44.69 3.71
714 750 9.555727 GTTACATGGTATAATTACACATCCAGT 57.444 33.333 0.00 0.00 0.00 4.00
715 751 8.999431 GGTTACATGGTATAATTACACATCCAG 58.001 37.037 0.00 0.00 0.00 3.86
716 752 8.495260 TGGTTACATGGTATAATTACACATCCA 58.505 33.333 0.00 0.00 0.00 3.41
717 753 8.911918 TGGTTACATGGTATAATTACACATCC 57.088 34.615 0.00 0.00 0.00 3.51
719 755 9.914834 AGTTGGTTACATGGTATAATTACACAT 57.085 29.630 0.00 0.00 0.00 3.21
729 765 9.778741 CAGTCATTATAGTTGGTTACATGGTAT 57.221 33.333 0.00 0.00 0.00 2.73
730 766 7.713507 GCAGTCATTATAGTTGGTTACATGGTA 59.286 37.037 0.00 0.00 0.00 3.25
731 767 6.542370 GCAGTCATTATAGTTGGTTACATGGT 59.458 38.462 0.00 0.00 0.00 3.55
732 768 6.767902 AGCAGTCATTATAGTTGGTTACATGG 59.232 38.462 0.00 0.00 0.00 3.66
733 769 7.495606 TCAGCAGTCATTATAGTTGGTTACATG 59.504 37.037 0.00 0.00 0.00 3.21
734 770 7.495934 GTCAGCAGTCATTATAGTTGGTTACAT 59.504 37.037 0.00 0.00 0.00 2.29
735 771 6.816640 GTCAGCAGTCATTATAGTTGGTTACA 59.183 38.462 0.00 0.00 0.00 2.41
736 772 7.042335 AGTCAGCAGTCATTATAGTTGGTTAC 58.958 38.462 0.00 0.00 0.00 2.50
737 773 7.182817 AGTCAGCAGTCATTATAGTTGGTTA 57.817 36.000 0.00 0.00 0.00 2.85
738 774 6.054860 AGTCAGCAGTCATTATAGTTGGTT 57.945 37.500 0.00 0.00 0.00 3.67
739 775 5.683876 AGTCAGCAGTCATTATAGTTGGT 57.316 39.130 0.00 0.00 0.00 3.67
740 776 6.992063 AAAGTCAGCAGTCATTATAGTTGG 57.008 37.500 0.00 0.00 0.00 3.77
742 778 9.890629 TGATTAAAGTCAGCAGTCATTATAGTT 57.109 29.630 0.00 0.00 0.00 2.24
743 779 9.890629 TTGATTAAAGTCAGCAGTCATTATAGT 57.109 29.630 0.00 0.00 0.00 2.12
745 781 9.890629 AGTTGATTAAAGTCAGCAGTCATTATA 57.109 29.630 0.00 0.00 32.48 0.98
746 782 8.798859 AGTTGATTAAAGTCAGCAGTCATTAT 57.201 30.769 0.00 0.00 32.48 1.28
747 783 8.621532 AAGTTGATTAAAGTCAGCAGTCATTA 57.378 30.769 0.00 0.00 32.48 1.90
748 784 7.516198 AAGTTGATTAAAGTCAGCAGTCATT 57.484 32.000 0.00 0.00 32.48 2.57
749 785 7.516198 AAAGTTGATTAAAGTCAGCAGTCAT 57.484 32.000 0.00 0.00 32.48 3.06
750 786 6.942532 AAAGTTGATTAAAGTCAGCAGTCA 57.057 33.333 0.00 0.00 32.48 3.41
751 787 9.548208 GATAAAAGTTGATTAAAGTCAGCAGTC 57.452 33.333 0.00 0.00 32.48 3.51
752 788 9.289782 AGATAAAAGTTGATTAAAGTCAGCAGT 57.710 29.630 0.00 0.00 32.48 4.40
753 789 9.766277 GAGATAAAAGTTGATTAAAGTCAGCAG 57.234 33.333 0.00 0.00 32.48 4.24
754 790 9.507329 AGAGATAAAAGTTGATTAAAGTCAGCA 57.493 29.630 0.00 0.00 32.48 4.41
769 805 9.220767 GGCGGAATTCATTATAGAGATAAAAGT 57.779 33.333 7.93 0.00 31.28 2.66
770 806 8.669243 GGGCGGAATTCATTATAGAGATAAAAG 58.331 37.037 7.93 0.00 31.28 2.27
771 807 8.383175 AGGGCGGAATTCATTATAGAGATAAAA 58.617 33.333 7.93 0.00 31.28 1.52
772 808 7.918076 AGGGCGGAATTCATTATAGAGATAAA 58.082 34.615 7.93 0.00 31.28 1.40
773 809 7.496346 AGGGCGGAATTCATTATAGAGATAA 57.504 36.000 7.93 0.00 32.06 1.75
774 810 7.618117 TGTAGGGCGGAATTCATTATAGAGATA 59.382 37.037 7.93 0.00 0.00 1.98
775 811 6.440647 TGTAGGGCGGAATTCATTATAGAGAT 59.559 38.462 7.93 0.00 0.00 2.75
776 812 5.778241 TGTAGGGCGGAATTCATTATAGAGA 59.222 40.000 7.93 0.00 0.00 3.10
777 813 6.037786 TGTAGGGCGGAATTCATTATAGAG 57.962 41.667 7.93 0.00 0.00 2.43
778 814 6.620877 ATGTAGGGCGGAATTCATTATAGA 57.379 37.500 7.93 0.00 0.00 1.98
779 815 6.403636 GCAATGTAGGGCGGAATTCATTATAG 60.404 42.308 7.93 0.00 0.00 1.31
780 816 5.414454 GCAATGTAGGGCGGAATTCATTATA 59.586 40.000 7.93 0.00 0.00 0.98
781 817 4.218417 GCAATGTAGGGCGGAATTCATTAT 59.782 41.667 7.93 0.00 0.00 1.28
782 818 3.568007 GCAATGTAGGGCGGAATTCATTA 59.432 43.478 7.93 0.00 0.00 1.90
783 819 2.362077 GCAATGTAGGGCGGAATTCATT 59.638 45.455 7.93 0.00 0.00 2.57
784 820 1.956477 GCAATGTAGGGCGGAATTCAT 59.044 47.619 7.93 0.00 0.00 2.57
785 821 1.064758 AGCAATGTAGGGCGGAATTCA 60.065 47.619 7.93 0.00 34.54 2.57
786 822 1.334869 CAGCAATGTAGGGCGGAATTC 59.665 52.381 0.00 0.00 34.54 2.17
787 823 1.340991 ACAGCAATGTAGGGCGGAATT 60.341 47.619 0.00 0.00 34.54 2.17
788 824 0.255890 ACAGCAATGTAGGGCGGAAT 59.744 50.000 0.00 0.00 34.54 3.01
789 825 0.392461 GACAGCAATGTAGGGCGGAA 60.392 55.000 0.00 0.00 34.54 4.30
790 826 1.220749 GACAGCAATGTAGGGCGGA 59.779 57.895 0.00 0.00 34.54 5.54
791 827 0.464373 ATGACAGCAATGTAGGGCGG 60.464 55.000 0.00 0.00 34.54 6.13
792 828 1.382522 AATGACAGCAATGTAGGGCG 58.617 50.000 0.00 0.00 34.54 6.13
793 829 4.794003 GCATAAATGACAGCAATGTAGGGC 60.794 45.833 0.00 0.00 0.00 5.19
794 830 4.338964 TGCATAAATGACAGCAATGTAGGG 59.661 41.667 0.00 0.00 33.48 3.53
795 831 5.297527 TCTGCATAAATGACAGCAATGTAGG 59.702 40.000 10.03 0.00 36.44 3.18
796 832 6.367686 TCTGCATAAATGACAGCAATGTAG 57.632 37.500 0.00 5.82 36.44 2.74
797 833 6.183360 CCTTCTGCATAAATGACAGCAATGTA 60.183 38.462 0.00 0.00 36.44 2.29
798 834 5.393787 CCTTCTGCATAAATGACAGCAATGT 60.394 40.000 0.00 0.00 36.44 2.71
799 835 5.041287 CCTTCTGCATAAATGACAGCAATG 58.959 41.667 0.00 0.00 36.44 2.82
800 836 4.441079 GCCTTCTGCATAAATGACAGCAAT 60.441 41.667 0.00 0.00 40.77 3.56
801 837 3.119388 GCCTTCTGCATAAATGACAGCAA 60.119 43.478 0.00 5.25 40.77 3.91
802 838 2.424601 GCCTTCTGCATAAATGACAGCA 59.575 45.455 0.00 0.00 40.77 4.41
803 839 2.686915 AGCCTTCTGCATAAATGACAGC 59.313 45.455 0.00 0.00 44.83 4.40
804 840 4.197750 AGAGCCTTCTGCATAAATGACAG 58.802 43.478 0.00 1.74 44.83 3.51
805 841 4.194640 GAGAGCCTTCTGCATAAATGACA 58.805 43.478 0.00 0.00 44.83 3.58
806 842 4.194640 TGAGAGCCTTCTGCATAAATGAC 58.805 43.478 0.00 0.00 44.83 3.06
807 843 4.080695 ACTGAGAGCCTTCTGCATAAATGA 60.081 41.667 0.00 0.00 44.83 2.57
808 844 4.197750 ACTGAGAGCCTTCTGCATAAATG 58.802 43.478 0.00 0.00 44.83 2.32
809 845 4.500499 ACTGAGAGCCTTCTGCATAAAT 57.500 40.909 0.00 0.00 44.83 1.40
810 846 3.988976 ACTGAGAGCCTTCTGCATAAA 57.011 42.857 0.00 0.00 44.83 1.40
811 847 3.008375 ACAACTGAGAGCCTTCTGCATAA 59.992 43.478 0.00 0.00 44.83 1.90
812 848 2.568956 ACAACTGAGAGCCTTCTGCATA 59.431 45.455 0.00 0.00 44.83 3.14
813 849 1.350351 ACAACTGAGAGCCTTCTGCAT 59.650 47.619 0.00 0.00 44.83 3.96
814 850 0.761187 ACAACTGAGAGCCTTCTGCA 59.239 50.000 0.00 0.00 44.83 4.41
815 851 1.155042 CACAACTGAGAGCCTTCTGC 58.845 55.000 0.00 0.00 41.71 4.26
816 852 2.540265 ACACAACTGAGAGCCTTCTG 57.460 50.000 0.00 0.00 32.53 3.02
817 853 4.772624 TGTATACACAACTGAGAGCCTTCT 59.227 41.667 0.08 0.00 36.01 2.85
818 854 4.865365 GTGTATACACAACTGAGAGCCTTC 59.135 45.833 27.37 0.00 45.75 3.46
819 855 4.822026 GTGTATACACAACTGAGAGCCTT 58.178 43.478 27.37 0.00 45.75 4.35
820 856 4.457834 GTGTATACACAACTGAGAGCCT 57.542 45.455 27.37 0.00 45.75 4.58
832 868 6.721571 AGTTGCTACAACATGTGTATACAC 57.278 37.500 25.99 25.99 41.93 2.90
833 869 7.832769 TCTAGTTGCTACAACATGTGTATACA 58.167 34.615 12.56 0.08 41.93 2.29
834 870 8.188799 TCTCTAGTTGCTACAACATGTGTATAC 58.811 37.037 12.56 0.00 41.93 1.47
835 871 8.288689 TCTCTAGTTGCTACAACATGTGTATA 57.711 34.615 12.56 0.00 41.93 1.47
836 872 7.170393 TCTCTAGTTGCTACAACATGTGTAT 57.830 36.000 12.56 0.00 41.93 2.29
837 873 6.584185 TCTCTAGTTGCTACAACATGTGTA 57.416 37.500 12.56 3.62 41.98 2.90
838 874 5.468540 TCTCTAGTTGCTACAACATGTGT 57.531 39.130 12.56 2.49 44.82 3.72
839 875 6.785488 TTTCTCTAGTTGCTACAACATGTG 57.215 37.500 12.56 0.00 0.00 3.21
840 876 7.499232 ACTTTTTCTCTAGTTGCTACAACATGT 59.501 33.333 12.56 0.00 0.00 3.21
841 877 7.800380 CACTTTTTCTCTAGTTGCTACAACATG 59.200 37.037 12.56 0.00 0.00 3.21
842 878 7.520614 GCACTTTTTCTCTAGTTGCTACAACAT 60.521 37.037 12.56 1.48 0.00 2.71
843 879 6.238374 GCACTTTTTCTCTAGTTGCTACAACA 60.238 38.462 12.56 0.00 0.00 3.33
844 880 6.017852 AGCACTTTTTCTCTAGTTGCTACAAC 60.018 38.462 0.13 2.23 31.60 3.32
845 881 6.055588 AGCACTTTTTCTCTAGTTGCTACAA 58.944 36.000 0.13 0.00 31.60 2.41
846 882 5.611374 AGCACTTTTTCTCTAGTTGCTACA 58.389 37.500 0.13 0.00 31.60 2.74
847 883 5.120986 GGAGCACTTTTTCTCTAGTTGCTAC 59.879 44.000 0.00 0.00 32.68 3.58
848 884 5.012148 AGGAGCACTTTTTCTCTAGTTGCTA 59.988 40.000 0.00 0.00 32.68 3.49
849 885 4.068599 GGAGCACTTTTTCTCTAGTTGCT 58.931 43.478 0.00 0.00 34.09 3.91
850 886 4.068599 AGGAGCACTTTTTCTCTAGTTGC 58.931 43.478 0.00 0.00 0.00 4.17
851 887 4.083590 GCAGGAGCACTTTTTCTCTAGTTG 60.084 45.833 0.00 0.00 41.58 3.16
852 888 4.068599 GCAGGAGCACTTTTTCTCTAGTT 58.931 43.478 0.00 0.00 41.58 2.24
853 889 3.669536 GCAGGAGCACTTTTTCTCTAGT 58.330 45.455 0.00 0.00 41.58 2.57
867 903 4.068599 ACTTTTTCTCTAGTTGCAGGAGC 58.931 43.478 0.00 0.00 42.57 4.70
868 904 4.083590 GCACTTTTTCTCTAGTTGCAGGAG 60.084 45.833 0.00 0.00 0.00 3.69
869 905 3.815401 GCACTTTTTCTCTAGTTGCAGGA 59.185 43.478 0.00 0.00 0.00 3.86
870 906 3.817647 AGCACTTTTTCTCTAGTTGCAGG 59.182 43.478 0.00 0.00 0.00 4.85
871 907 4.376819 CGAGCACTTTTTCTCTAGTTGCAG 60.377 45.833 0.00 0.00 0.00 4.41
872 908 3.494626 CGAGCACTTTTTCTCTAGTTGCA 59.505 43.478 0.00 0.00 0.00 4.08
873 909 3.120511 CCGAGCACTTTTTCTCTAGTTGC 60.121 47.826 0.00 0.00 0.00 4.17
874 910 4.307432 TCCGAGCACTTTTTCTCTAGTTG 58.693 43.478 0.00 0.00 0.00 3.16
875 911 4.602340 TCCGAGCACTTTTTCTCTAGTT 57.398 40.909 0.00 0.00 0.00 2.24
876 912 4.561105 CTTCCGAGCACTTTTTCTCTAGT 58.439 43.478 0.00 0.00 0.00 2.57
877 913 3.929610 CCTTCCGAGCACTTTTTCTCTAG 59.070 47.826 0.00 0.00 0.00 2.43
878 914 3.576982 TCCTTCCGAGCACTTTTTCTCTA 59.423 43.478 0.00 0.00 0.00 2.43
879 915 2.368875 TCCTTCCGAGCACTTTTTCTCT 59.631 45.455 0.00 0.00 0.00 3.10
880 916 2.739379 CTCCTTCCGAGCACTTTTTCTC 59.261 50.000 0.00 0.00 0.00 2.87
881 917 2.772287 CTCCTTCCGAGCACTTTTTCT 58.228 47.619 0.00 0.00 0.00 2.52
891 927 1.880340 GACATGCGCTCCTTCCGAG 60.880 63.158 9.73 0.00 42.04 4.63
892 928 1.035385 TAGACATGCGCTCCTTCCGA 61.035 55.000 9.73 0.00 0.00 4.55
893 929 0.872021 GTAGACATGCGCTCCTTCCG 60.872 60.000 9.73 0.00 0.00 4.30
894 930 0.530870 GGTAGACATGCGCTCCTTCC 60.531 60.000 9.73 4.03 0.00 3.46
895 931 0.461961 AGGTAGACATGCGCTCCTTC 59.538 55.000 9.73 0.00 0.00 3.46
896 932 0.176680 CAGGTAGACATGCGCTCCTT 59.823 55.000 9.73 0.00 0.00 3.36
897 933 1.680522 CCAGGTAGACATGCGCTCCT 61.681 60.000 9.73 2.72 0.00 3.69
898 934 1.227380 CCAGGTAGACATGCGCTCC 60.227 63.158 9.73 0.00 0.00 4.70
899 935 0.744874 TACCAGGTAGACATGCGCTC 59.255 55.000 9.73 0.00 0.00 5.03
900 936 0.460311 GTACCAGGTAGACATGCGCT 59.540 55.000 9.73 0.00 0.00 5.92
901 937 0.529992 GGTACCAGGTAGACATGCGC 60.530 60.000 7.15 0.00 0.00 6.09
902 938 0.248907 CGGTACCAGGTAGACATGCG 60.249 60.000 13.54 0.00 0.00 4.73
903 939 0.529992 GCGGTACCAGGTAGACATGC 60.530 60.000 13.54 0.00 0.00 4.06
904 940 0.821517 TGCGGTACCAGGTAGACATG 59.178 55.000 13.54 0.00 0.00 3.21
905 941 0.822164 GTGCGGTACCAGGTAGACAT 59.178 55.000 13.54 0.00 0.00 3.06
906 942 0.540133 TGTGCGGTACCAGGTAGACA 60.540 55.000 13.54 1.86 0.00 3.41
907 943 0.172803 CTGTGCGGTACCAGGTAGAC 59.827 60.000 13.54 0.00 0.00 2.59
908 944 0.968901 CCTGTGCGGTACCAGGTAGA 60.969 60.000 13.54 0.00 0.00 2.59
909 945 0.968901 TCCTGTGCGGTACCAGGTAG 60.969 60.000 13.54 4.57 36.30 3.18
910 946 0.968901 CTCCTGTGCGGTACCAGGTA 60.969 60.000 13.54 0.00 36.30 3.08
911 947 2.203728 TCCTGTGCGGTACCAGGT 60.204 61.111 13.54 0.00 36.30 4.00
912 948 2.283529 ACTCCTGTGCGGTACCAGG 61.284 63.158 13.54 11.18 36.22 4.45
913 949 1.079819 CACTCCTGTGCGGTACCAG 60.080 63.158 13.54 6.04 37.38 4.00
914 950 3.056458 CACTCCTGTGCGGTACCA 58.944 61.111 13.54 0.00 37.38 3.25
922 958 2.740055 GCCTGACGCACTCCTGTG 60.740 66.667 0.00 0.00 46.37 3.66
923 959 4.363990 CGCCTGACGCACTCCTGT 62.364 66.667 0.00 0.00 37.30 4.00
951 987 4.715523 TAGCAGTTGGGGCGTGCC 62.716 66.667 1.16 1.16 37.98 5.01
952 988 2.515996 TACTAGCAGTTGGGGCGTGC 62.516 60.000 0.00 0.00 37.48 5.34
953 989 0.739813 GTACTAGCAGTTGGGGCGTG 60.740 60.000 0.00 0.00 36.08 5.34
954 990 1.189524 TGTACTAGCAGTTGGGGCGT 61.190 55.000 0.00 0.00 36.08 5.68
955 991 0.739813 GTGTACTAGCAGTTGGGGCG 60.740 60.000 0.00 0.00 36.08 6.13
956 992 0.323629 TGTGTACTAGCAGTTGGGGC 59.676 55.000 0.00 0.00 0.00 5.80
957 993 1.346395 TGTGTGTACTAGCAGTTGGGG 59.654 52.381 0.00 0.00 0.00 4.96
958 994 2.224185 TGTGTGTGTACTAGCAGTTGGG 60.224 50.000 0.00 0.00 0.00 4.12
959 995 3.106242 TGTGTGTGTACTAGCAGTTGG 57.894 47.619 0.00 0.00 0.00 3.77
960 996 4.152402 GGATTGTGTGTGTACTAGCAGTTG 59.848 45.833 0.00 0.00 0.00 3.16
961 997 4.040461 AGGATTGTGTGTGTACTAGCAGTT 59.960 41.667 0.00 0.00 0.00 3.16
962 998 3.578716 AGGATTGTGTGTGTACTAGCAGT 59.421 43.478 0.00 0.00 0.00 4.40
963 999 3.928992 CAGGATTGTGTGTGTACTAGCAG 59.071 47.826 0.00 0.00 0.00 4.24
964 1000 3.864540 GCAGGATTGTGTGTGTACTAGCA 60.865 47.826 0.00 0.00 0.00 3.49
965 1001 2.673368 GCAGGATTGTGTGTGTACTAGC 59.327 50.000 0.00 0.00 0.00 3.42
966 1002 3.055819 AGGCAGGATTGTGTGTGTACTAG 60.056 47.826 0.00 0.00 0.00 2.57
967 1003 2.903784 AGGCAGGATTGTGTGTGTACTA 59.096 45.455 0.00 0.00 0.00 1.82
968 1004 1.699634 AGGCAGGATTGTGTGTGTACT 59.300 47.619 0.00 0.00 0.00 2.73
969 1005 2.185004 AGGCAGGATTGTGTGTGTAC 57.815 50.000 0.00 0.00 0.00 2.90
998 1034 1.007721 AGGTAGGCTGAGGAGACATGT 59.992 52.381 0.00 0.00 0.00 3.21
999 1035 1.786937 AGGTAGGCTGAGGAGACATG 58.213 55.000 0.00 0.00 0.00 3.21
1045 1081 2.784095 GGAAATAGGAAGGGTTAGGCCT 59.216 50.000 11.78 11.78 37.43 5.19
1108 1144 1.207329 GGCGTACAGGTGGAGAAGAAT 59.793 52.381 0.00 0.00 0.00 2.40
1317 1353 6.096036 CACAAACACCATGTTGAAACAAGTA 58.904 36.000 0.00 0.00 40.14 2.24
1319 1355 4.329528 CCACAAACACCATGTTGAAACAAG 59.670 41.667 0.00 0.00 40.14 3.16
1535 1571 2.214376 AATGGAGGCGGATTTTGTGA 57.786 45.000 0.00 0.00 0.00 3.58
1567 1603 6.095440 CCCATAAACCTATGCCAAGTATATGC 59.905 42.308 0.00 0.00 34.62 3.14
1771 1816 1.880027 ACATTTCAAGGAACTCACCGC 59.120 47.619 0.00 0.00 38.49 5.68
1978 2024 4.210093 ACGTTGCGGTGTCGTGGA 62.210 61.111 0.00 0.00 38.89 4.02
2016 2064 3.943381 GTGAATCAATGACAGCTCCATGA 59.057 43.478 0.00 1.27 0.00 3.07
2303 2352 3.007614 AGTGATGTTAGGGCGTTGTACTT 59.992 43.478 0.00 0.00 0.00 2.24
2311 2360 5.007332 GGTAATTGTTAGTGATGTTAGGGCG 59.993 44.000 0.00 0.00 0.00 6.13
2329 2378 2.095466 CGTGCGGACATTTGTGGTAATT 60.095 45.455 8.11 0.00 0.00 1.40
2484 2533 4.210746 GTGAAACACTTCGGGACTAGTTTC 59.789 45.833 0.00 0.00 42.92 2.78
2592 2664 6.266168 TGATATGAAAACCATCACGCTTTT 57.734 33.333 0.00 0.00 36.71 2.27
2593 2665 5.677091 GCTGATATGAAAACCATCACGCTTT 60.677 40.000 0.00 0.00 36.71 3.51
2651 2724 3.904800 TGACCTCAACAAAGACACAGA 57.095 42.857 0.00 0.00 0.00 3.41
2652 2725 5.505173 AATTGACCTCAACAAAGACACAG 57.495 39.130 0.00 0.00 38.86 3.66
2664 2737 3.134574 AGCGTGGTAAAATTGACCTCA 57.865 42.857 0.53 0.00 37.88 3.86
2670 2743 6.806249 ACAATATGACAAGCGTGGTAAAATTG 59.194 34.615 4.26 9.35 0.00 2.32
2774 3044 6.629128 TGTTTGTTTTCATGTGTGAGATGTT 58.371 32.000 0.00 0.00 35.39 2.71
2884 3154 4.306600 GGATCACGTTTGCCTGAATTTTT 58.693 39.130 0.00 0.00 0.00 1.94
2892 3162 2.746277 GCGGGATCACGTTTGCCT 60.746 61.111 20.26 0.00 35.98 4.75
2952 3222 2.203139 CACAAGTGCACACCGGGA 60.203 61.111 21.04 0.00 0.00 5.14
2974 3245 1.187087 ACGGCCCAACAAAAGAAACA 58.813 45.000 0.00 0.00 0.00 2.83
2992 3263 6.141685 CCAGTAGAAACAAATACACGCAAAAC 59.858 38.462 0.00 0.00 0.00 2.43
3063 3334 8.706322 AAAACAAGATACATTTTCTACTGGGT 57.294 30.769 0.00 0.00 0.00 4.51
3093 3364 3.626930 ACTCTAAAAACAGCACCCAACA 58.373 40.909 0.00 0.00 0.00 3.33
3230 3501 3.181489 GGTCCATCTCCAGTAACTACACG 60.181 52.174 0.00 0.00 0.00 4.49
3258 3530 7.880713 TGCTAGTAAAATGTACATGAACAGGAA 59.119 33.333 9.63 0.00 31.70 3.36
3259 3531 7.390823 TGCTAGTAAAATGTACATGAACAGGA 58.609 34.615 9.63 6.97 31.70 3.86
3260 3532 7.609760 TGCTAGTAAAATGTACATGAACAGG 57.390 36.000 9.63 6.32 31.70 4.00
3403 3675 1.275573 GGTCGAGGGCTAGTTTTGAGT 59.724 52.381 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.