Multiple sequence alignment - TraesCS4B01G129500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G129500 chr4B 100.000 3491 0 0 1 3491 169744589 169748079 0.000000e+00 6447
1 TraesCS4B01G129500 chr4B 94.814 1562 66 8 1809 3362 338721521 338719967 0.000000e+00 2422
2 TraesCS4B01G129500 chr4B 96.203 316 11 1 1 315 321707717 321707402 1.860000e-142 516
3 TraesCS4B01G129500 chr5B 94.975 3204 124 21 315 3488 364452786 364449590 0.000000e+00 4990
4 TraesCS4B01G129500 chr5B 95.671 231 7 3 315 542 252649976 252649746 5.500000e-98 368
5 TraesCS4B01G129500 chr5B 86.528 193 16 7 3308 3491 4634660 4634469 1.640000e-48 204
6 TraesCS4B01G129500 chr1B 91.554 3031 214 31 479 3488 685555542 685558551 0.000000e+00 4141
7 TraesCS4B01G129500 chr1B 94.367 2237 109 15 315 2544 307386188 307383962 0.000000e+00 3417
8 TraesCS4B01G129500 chr2B 91.779 2968 203 35 546 3491 399402805 399399857 0.000000e+00 4091
9 TraesCS4B01G129500 chr2B 89.170 2530 228 29 758 3267 545612313 545609810 0.000000e+00 3112
10 TraesCS4B01G129500 chr2B 96.203 316 11 1 1 315 677536148 677536463 1.860000e-142 516
11 TraesCS4B01G129500 chr2B 90.777 206 17 2 3286 3491 465449102 465448899 1.230000e-69 274
12 TraesCS4B01G129500 chr3B 91.445 2969 212 30 547 3491 453572105 453569155 0.000000e+00 4037
13 TraesCS4B01G129500 chr3B 91.450 1883 142 18 669 2544 128996071 128994201 0.000000e+00 2567
14 TraesCS4B01G129500 chr3B 86.066 488 45 15 315 795 625455646 625456117 1.450000e-138 503
15 TraesCS4B01G129500 chr3B 92.857 112 6 2 3381 3491 393195360 393195470 1.000000e-35 161
16 TraesCS4B01G129500 chr6B 89.301 2832 268 30 564 3376 288280453 288283268 0.000000e+00 3518
17 TraesCS4B01G129500 chr6B 88.785 107 12 0 3385 3491 120509915 120509809 7.860000e-27 132
18 TraesCS4B01G129500 chrUn 91.531 1972 140 21 1535 3491 41661634 41663593 0.000000e+00 2691
19 TraesCS4B01G129500 chrUn 96.519 316 9 2 1 315 290965555 290965869 3.990000e-144 521
20 TraesCS4B01G129500 chr2D 96.203 316 11 1 1 315 499252886 499253201 1.860000e-142 516
21 TraesCS4B01G129500 chr7D 95.886 316 12 1 1 315 215829115 215829430 8.640000e-141 510
22 TraesCS4B01G129500 chr6D 95.886 316 12 1 1 315 130409983 130410298 8.640000e-141 510
23 TraesCS4B01G129500 chr6D 95.886 316 12 1 1 315 319436327 319436012 8.640000e-141 510
24 TraesCS4B01G129500 chr5D 95.886 316 12 1 1 315 69238508 69238823 8.640000e-141 510
25 TraesCS4B01G129500 chr4D 95.886 316 12 1 1 315 84925924 84925609 8.640000e-141 510
26 TraesCS4B01G129500 chr7B 96.203 79 2 1 3414 3491 242317189 242317267 1.020000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G129500 chr4B 169744589 169748079 3490 False 6447 6447 100.000 1 3491 1 chr4B.!!$F1 3490
1 TraesCS4B01G129500 chr4B 338719967 338721521 1554 True 2422 2422 94.814 1809 3362 1 chr4B.!!$R2 1553
2 TraesCS4B01G129500 chr5B 364449590 364452786 3196 True 4990 4990 94.975 315 3488 1 chr5B.!!$R3 3173
3 TraesCS4B01G129500 chr1B 685555542 685558551 3009 False 4141 4141 91.554 479 3488 1 chr1B.!!$F1 3009
4 TraesCS4B01G129500 chr1B 307383962 307386188 2226 True 3417 3417 94.367 315 2544 1 chr1B.!!$R1 2229
5 TraesCS4B01G129500 chr2B 399399857 399402805 2948 True 4091 4091 91.779 546 3491 1 chr2B.!!$R1 2945
6 TraesCS4B01G129500 chr2B 545609810 545612313 2503 True 3112 3112 89.170 758 3267 1 chr2B.!!$R3 2509
7 TraesCS4B01G129500 chr3B 453569155 453572105 2950 True 4037 4037 91.445 547 3491 1 chr3B.!!$R2 2944
8 TraesCS4B01G129500 chr3B 128994201 128996071 1870 True 2567 2567 91.450 669 2544 1 chr3B.!!$R1 1875
9 TraesCS4B01G129500 chr6B 288280453 288283268 2815 False 3518 3518 89.301 564 3376 1 chr6B.!!$F1 2812
10 TraesCS4B01G129500 chrUn 41661634 41663593 1959 False 2691 2691 91.531 1535 3491 1 chrUn.!!$F1 1956

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 313 0.037232 CAGTTCTCGGAAGGACCACC 60.037 60.000 0.00 0.0 38.90 4.61 F
313 314 0.471211 AGTTCTCGGAAGGACCACCA 60.471 55.000 8.18 0.0 38.90 4.17 F
1253 1277 1.207329 GCGTGGTTACTTCCATCCTCT 59.793 52.381 0.00 0.0 39.81 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 1638 0.033228 GATCATCCTCGGCACTCCAG 59.967 60.000 0.0 0.0 0.00 3.86 R
2006 2048 4.380843 TTGGGTAAACCTGACACATCAT 57.619 40.909 0.0 0.0 41.11 2.45 R
2640 2692 1.608025 GGTCATGAAACAGCTCACCGA 60.608 52.381 0.0 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.680619 TGTTCTAGAAACAGGAACACATGT 58.319 37.500 6.78 0.00 42.56 3.21
45 46 5.758296 TGTTCTAGAAACAGGAACACATGTC 59.242 40.000 6.78 0.00 42.56 3.06
46 47 5.545063 TCTAGAAACAGGAACACATGTCA 57.455 39.130 0.00 0.00 0.00 3.58
47 48 6.114187 TCTAGAAACAGGAACACATGTCAT 57.886 37.500 0.00 0.00 0.00 3.06
48 49 7.239763 TCTAGAAACAGGAACACATGTCATA 57.760 36.000 0.00 0.00 0.00 2.15
49 50 7.851228 TCTAGAAACAGGAACACATGTCATAT 58.149 34.615 0.00 0.00 0.00 1.78
50 51 8.321353 TCTAGAAACAGGAACACATGTCATATT 58.679 33.333 0.00 0.00 0.00 1.28
51 52 7.383102 AGAAACAGGAACACATGTCATATTC 57.617 36.000 0.00 0.00 0.00 1.75
52 53 6.942005 AGAAACAGGAACACATGTCATATTCA 59.058 34.615 0.00 0.00 0.00 2.57
53 54 6.500684 AACAGGAACACATGTCATATTCAC 57.499 37.500 0.00 0.00 0.00 3.18
54 55 5.559770 ACAGGAACACATGTCATATTCACA 58.440 37.500 0.00 0.00 0.00 3.58
55 56 5.412594 ACAGGAACACATGTCATATTCACAC 59.587 40.000 0.00 0.00 0.00 3.82
56 57 4.631377 AGGAACACATGTCATATTCACACG 59.369 41.667 0.00 0.00 0.00 4.49
57 58 4.334443 GAACACATGTCATATTCACACGC 58.666 43.478 0.00 0.00 0.00 5.34
58 59 3.333804 ACACATGTCATATTCACACGCA 58.666 40.909 0.00 0.00 0.00 5.24
59 60 3.940852 ACACATGTCATATTCACACGCAT 59.059 39.130 0.00 0.00 0.00 4.73
60 61 4.395854 ACACATGTCATATTCACACGCATT 59.604 37.500 0.00 0.00 0.00 3.56
61 62 5.584251 ACACATGTCATATTCACACGCATTA 59.416 36.000 0.00 0.00 0.00 1.90
62 63 6.260714 ACACATGTCATATTCACACGCATTAT 59.739 34.615 0.00 0.00 0.00 1.28
63 64 6.575942 CACATGTCATATTCACACGCATTATG 59.424 38.462 0.00 0.00 0.00 1.90
64 65 6.260714 ACATGTCATATTCACACGCATTATGT 59.739 34.615 0.00 0.00 0.00 2.29
76 77 5.863898 CACGCATTATGTGTAAAGTAAGCA 58.136 37.500 11.24 0.00 39.36 3.91
77 78 5.959527 CACGCATTATGTGTAAAGTAAGCAG 59.040 40.000 11.24 0.00 39.36 4.24
78 79 5.872617 ACGCATTATGTGTAAAGTAAGCAGA 59.127 36.000 9.87 0.00 39.63 4.26
79 80 6.538742 ACGCATTATGTGTAAAGTAAGCAGAT 59.461 34.615 9.87 0.00 39.63 2.90
80 81 6.847792 CGCATTATGTGTAAAGTAAGCAGATG 59.152 38.462 0.00 0.00 0.00 2.90
81 82 7.465916 CGCATTATGTGTAAAGTAAGCAGATGT 60.466 37.037 0.00 0.00 0.00 3.06
82 83 7.641411 GCATTATGTGTAAAGTAAGCAGATGTG 59.359 37.037 0.00 0.00 0.00 3.21
83 84 8.882736 CATTATGTGTAAAGTAAGCAGATGTGA 58.117 33.333 0.00 0.00 0.00 3.58
84 85 9.618890 ATTATGTGTAAAGTAAGCAGATGTGAT 57.381 29.630 0.00 0.00 0.00 3.06
85 86 7.928307 ATGTGTAAAGTAAGCAGATGTGATT 57.072 32.000 0.00 0.00 36.01 2.57
86 87 7.364522 TGTGTAAAGTAAGCAGATGTGATTC 57.635 36.000 0.00 0.00 33.33 2.52
87 88 6.934083 TGTGTAAAGTAAGCAGATGTGATTCA 59.066 34.615 0.00 0.00 33.33 2.57
88 89 7.443879 TGTGTAAAGTAAGCAGATGTGATTCAA 59.556 33.333 0.00 0.00 33.33 2.69
89 90 7.746475 GTGTAAAGTAAGCAGATGTGATTCAAC 59.254 37.037 0.00 0.00 33.33 3.18
90 91 6.882610 AAAGTAAGCAGATGTGATTCAACA 57.117 33.333 0.00 0.00 33.33 3.33
91 92 6.882610 AAGTAAGCAGATGTGATTCAACAA 57.117 33.333 0.00 0.00 33.33 2.83
92 93 6.882610 AGTAAGCAGATGTGATTCAACAAA 57.117 33.333 0.00 0.00 33.33 2.83
93 94 6.906659 AGTAAGCAGATGTGATTCAACAAAG 58.093 36.000 0.00 0.00 33.33 2.77
94 95 5.779529 AAGCAGATGTGATTCAACAAAGT 57.220 34.783 0.00 0.00 32.81 2.66
95 96 5.779529 AGCAGATGTGATTCAACAAAGTT 57.220 34.783 0.00 0.00 32.81 2.66
96 97 6.882610 AGCAGATGTGATTCAACAAAGTTA 57.117 33.333 0.00 0.00 32.81 2.24
97 98 6.906659 AGCAGATGTGATTCAACAAAGTTAG 58.093 36.000 0.00 0.00 32.81 2.34
98 99 6.712095 AGCAGATGTGATTCAACAAAGTTAGA 59.288 34.615 0.00 0.00 32.81 2.10
99 100 7.229306 AGCAGATGTGATTCAACAAAGTTAGAA 59.771 33.333 0.00 0.00 32.81 2.10
100 101 7.536622 GCAGATGTGATTCAACAAAGTTAGAAG 59.463 37.037 0.00 0.00 32.81 2.85
101 102 7.536622 CAGATGTGATTCAACAAAGTTAGAAGC 59.463 37.037 0.00 0.00 32.81 3.86
102 103 6.691754 TGTGATTCAACAAAGTTAGAAGCA 57.308 33.333 8.06 8.06 34.45 3.91
103 104 7.094508 TGTGATTCAACAAAGTTAGAAGCAA 57.905 32.000 11.52 4.47 38.01 3.91
104 105 7.715657 TGTGATTCAACAAAGTTAGAAGCAAT 58.284 30.769 11.52 0.00 38.01 3.56
105 106 8.845227 TGTGATTCAACAAAGTTAGAAGCAATA 58.155 29.630 11.52 5.39 38.01 1.90
106 107 9.334693 GTGATTCAACAAAGTTAGAAGCAATAG 57.665 33.333 11.52 0.00 38.01 1.73
107 108 9.283768 TGATTCAACAAAGTTAGAAGCAATAGA 57.716 29.630 9.07 0.00 33.99 1.98
110 111 7.584987 TCAACAAAGTTAGAAGCAATAGAAGC 58.415 34.615 0.00 0.00 0.00 3.86
111 112 7.445402 TCAACAAAGTTAGAAGCAATAGAAGCT 59.555 33.333 0.00 0.00 45.97 3.74
112 113 8.721478 CAACAAAGTTAGAAGCAATAGAAGCTA 58.279 33.333 0.00 0.00 42.53 3.32
113 114 8.485976 ACAAAGTTAGAAGCAATAGAAGCTAG 57.514 34.615 0.00 0.00 42.53 3.42
114 115 8.314751 ACAAAGTTAGAAGCAATAGAAGCTAGA 58.685 33.333 0.00 0.00 42.53 2.43
115 116 8.599774 CAAAGTTAGAAGCAATAGAAGCTAGAC 58.400 37.037 0.00 0.00 42.53 2.59
116 117 7.411486 AGTTAGAAGCAATAGAAGCTAGACA 57.589 36.000 0.00 0.00 42.53 3.41
117 118 8.017418 AGTTAGAAGCAATAGAAGCTAGACAT 57.983 34.615 0.00 0.00 42.53 3.06
118 119 8.141268 AGTTAGAAGCAATAGAAGCTAGACATC 58.859 37.037 0.00 0.00 42.53 3.06
119 120 6.477053 AGAAGCAATAGAAGCTAGACATCA 57.523 37.500 0.00 0.00 42.53 3.07
120 121 7.065120 AGAAGCAATAGAAGCTAGACATCAT 57.935 36.000 0.00 0.00 42.53 2.45
121 122 8.187913 AGAAGCAATAGAAGCTAGACATCATA 57.812 34.615 0.00 0.00 42.53 2.15
122 123 8.087750 AGAAGCAATAGAAGCTAGACATCATAC 58.912 37.037 0.00 0.00 42.53 2.39
123 124 7.295322 AGCAATAGAAGCTAGACATCATACA 57.705 36.000 0.00 0.00 41.32 2.29
124 125 7.151308 AGCAATAGAAGCTAGACATCATACAC 58.849 38.462 0.00 0.00 41.32 2.90
125 126 6.925718 GCAATAGAAGCTAGACATCATACACA 59.074 38.462 0.00 0.00 0.00 3.72
126 127 7.439356 GCAATAGAAGCTAGACATCATACACAA 59.561 37.037 0.00 0.00 0.00 3.33
127 128 8.759641 CAATAGAAGCTAGACATCATACACAAC 58.240 37.037 0.00 0.00 0.00 3.32
128 129 6.286240 AGAAGCTAGACATCATACACAACA 57.714 37.500 0.00 0.00 0.00 3.33
129 130 6.882656 AGAAGCTAGACATCATACACAACAT 58.117 36.000 0.00 0.00 0.00 2.71
130 131 6.760298 AGAAGCTAGACATCATACACAACATG 59.240 38.462 0.00 0.00 0.00 3.21
131 132 4.813161 AGCTAGACATCATACACAACATGC 59.187 41.667 0.00 0.00 0.00 4.06
132 133 4.571984 GCTAGACATCATACACAACATGCA 59.428 41.667 0.00 0.00 0.00 3.96
133 134 5.065090 GCTAGACATCATACACAACATGCAA 59.935 40.000 0.00 0.00 0.00 4.08
134 135 5.300969 AGACATCATACACAACATGCAAC 57.699 39.130 0.00 0.00 0.00 4.17
135 136 4.156556 AGACATCATACACAACATGCAACC 59.843 41.667 0.00 0.00 0.00 3.77
136 137 3.825585 ACATCATACACAACATGCAACCA 59.174 39.130 0.00 0.00 0.00 3.67
137 138 3.913548 TCATACACAACATGCAACCAC 57.086 42.857 0.00 0.00 0.00 4.16
138 139 3.217626 TCATACACAACATGCAACCACA 58.782 40.909 0.00 0.00 0.00 4.17
139 140 3.825585 TCATACACAACATGCAACCACAT 59.174 39.130 0.00 0.00 0.00 3.21
140 141 5.006386 TCATACACAACATGCAACCACATA 58.994 37.500 0.00 0.00 0.00 2.29
141 142 5.651576 TCATACACAACATGCAACCACATAT 59.348 36.000 0.00 0.00 0.00 1.78
142 143 6.825721 TCATACACAACATGCAACCACATATA 59.174 34.615 0.00 0.00 0.00 0.86
143 144 5.973899 ACACAACATGCAACCACATATAA 57.026 34.783 0.00 0.00 0.00 0.98
144 145 6.528537 ACACAACATGCAACCACATATAAT 57.471 33.333 0.00 0.00 0.00 1.28
145 146 7.637631 ACACAACATGCAACCACATATAATA 57.362 32.000 0.00 0.00 0.00 0.98
146 147 7.706159 ACACAACATGCAACCACATATAATAG 58.294 34.615 0.00 0.00 0.00 1.73
147 148 7.339212 ACACAACATGCAACCACATATAATAGT 59.661 33.333 0.00 0.00 0.00 2.12
148 149 7.644945 CACAACATGCAACCACATATAATAGTG 59.355 37.037 0.00 0.00 35.56 2.74
149 150 6.317789 ACATGCAACCACATATAATAGTGC 57.682 37.500 0.00 0.00 34.48 4.40
150 151 5.241506 ACATGCAACCACATATAATAGTGCC 59.758 40.000 0.00 0.00 34.48 5.01
151 152 4.786425 TGCAACCACATATAATAGTGCCA 58.214 39.130 0.00 0.00 34.48 4.92
152 153 5.196695 TGCAACCACATATAATAGTGCCAA 58.803 37.500 0.00 0.00 34.48 4.52
153 154 5.299028 TGCAACCACATATAATAGTGCCAAG 59.701 40.000 0.00 0.00 34.48 3.61
154 155 5.299279 GCAACCACATATAATAGTGCCAAGT 59.701 40.000 0.00 0.00 34.48 3.16
155 156 6.183360 GCAACCACATATAATAGTGCCAAGTT 60.183 38.462 0.00 0.00 34.48 2.66
156 157 7.012894 GCAACCACATATAATAGTGCCAAGTTA 59.987 37.037 0.00 0.00 34.48 2.24
157 158 8.559536 CAACCACATATAATAGTGCCAAGTTAG 58.440 37.037 0.00 0.00 34.48 2.34
158 159 8.029782 ACCACATATAATAGTGCCAAGTTAGA 57.970 34.615 0.00 0.00 34.48 2.10
159 160 8.150945 ACCACATATAATAGTGCCAAGTTAGAG 58.849 37.037 0.00 0.00 34.48 2.43
160 161 7.118390 CCACATATAATAGTGCCAAGTTAGAGC 59.882 40.741 0.00 0.00 34.48 4.09
161 162 7.657354 CACATATAATAGTGCCAAGTTAGAGCA 59.343 37.037 0.00 0.00 0.00 4.26
162 163 8.210946 ACATATAATAGTGCCAAGTTAGAGCAA 58.789 33.333 0.00 0.00 38.45 3.91
163 164 8.715998 CATATAATAGTGCCAAGTTAGAGCAAG 58.284 37.037 0.00 0.00 38.45 4.01
164 165 1.528129 AGTGCCAAGTTAGAGCAAGC 58.472 50.000 0.00 0.00 38.45 4.01
165 166 1.202806 AGTGCCAAGTTAGAGCAAGCA 60.203 47.619 0.00 0.00 38.45 3.91
166 167 1.068954 GTGCCAAGTTAGAGCAAGCAC 60.069 52.381 0.00 0.00 41.86 4.40
167 168 1.238439 GCCAAGTTAGAGCAAGCACA 58.762 50.000 0.00 0.00 0.00 4.57
168 169 1.815003 GCCAAGTTAGAGCAAGCACAT 59.185 47.619 0.00 0.00 0.00 3.21
169 170 2.415090 GCCAAGTTAGAGCAAGCACATG 60.415 50.000 0.00 0.00 0.00 3.21
170 171 2.816087 CCAAGTTAGAGCAAGCACATGT 59.184 45.455 0.00 0.00 0.00 3.21
171 172 3.365666 CCAAGTTAGAGCAAGCACATGTG 60.366 47.826 21.83 21.83 0.00 3.21
172 173 3.407424 AGTTAGAGCAAGCACATGTGA 57.593 42.857 29.80 2.48 0.00 3.58
173 174 3.947868 AGTTAGAGCAAGCACATGTGAT 58.052 40.909 29.80 21.58 0.00 3.06
174 175 3.688185 AGTTAGAGCAAGCACATGTGATG 59.312 43.478 29.80 24.81 0.00 3.07
175 176 1.460504 AGAGCAAGCACATGTGATGG 58.539 50.000 29.80 22.21 33.60 3.51
176 177 1.171308 GAGCAAGCACATGTGATGGT 58.829 50.000 29.80 27.90 34.16 3.55
177 178 0.885879 AGCAAGCACATGTGATGGTG 59.114 50.000 29.80 19.52 38.05 4.17
178 179 0.108992 GCAAGCACATGTGATGGTGG 60.109 55.000 29.80 14.37 35.58 4.61
179 180 1.536940 CAAGCACATGTGATGGTGGA 58.463 50.000 29.80 0.00 35.58 4.02
180 181 1.471287 CAAGCACATGTGATGGTGGAG 59.529 52.381 29.80 6.31 35.58 3.86
181 182 0.694771 AGCACATGTGATGGTGGAGT 59.305 50.000 29.80 0.00 35.58 3.85
182 183 1.908619 AGCACATGTGATGGTGGAGTA 59.091 47.619 29.80 0.00 35.58 2.59
183 184 2.093288 AGCACATGTGATGGTGGAGTAG 60.093 50.000 29.80 0.00 35.58 2.57
184 185 2.910199 CACATGTGATGGTGGAGTAGG 58.090 52.381 21.64 0.00 33.60 3.18
185 186 1.839994 ACATGTGATGGTGGAGTAGGG 59.160 52.381 0.00 0.00 33.60 3.53
186 187 1.141657 CATGTGATGGTGGAGTAGGGG 59.858 57.143 0.00 0.00 0.00 4.79
187 188 0.415830 TGTGATGGTGGAGTAGGGGA 59.584 55.000 0.00 0.00 0.00 4.81
188 189 1.123928 GTGATGGTGGAGTAGGGGAG 58.876 60.000 0.00 0.00 0.00 4.30
189 190 1.015609 TGATGGTGGAGTAGGGGAGA 58.984 55.000 0.00 0.00 0.00 3.71
190 191 1.580658 TGATGGTGGAGTAGGGGAGAT 59.419 52.381 0.00 0.00 0.00 2.75
191 192 1.974236 GATGGTGGAGTAGGGGAGATG 59.026 57.143 0.00 0.00 0.00 2.90
192 193 0.716591 TGGTGGAGTAGGGGAGATGT 59.283 55.000 0.00 0.00 0.00 3.06
193 194 1.123928 GGTGGAGTAGGGGAGATGTG 58.876 60.000 0.00 0.00 0.00 3.21
194 195 0.466124 GTGGAGTAGGGGAGATGTGC 59.534 60.000 0.00 0.00 0.00 4.57
195 196 0.339859 TGGAGTAGGGGAGATGTGCT 59.660 55.000 0.00 0.00 0.00 4.40
196 197 1.044611 GGAGTAGGGGAGATGTGCTC 58.955 60.000 0.00 0.00 43.17 4.26
197 198 1.689575 GGAGTAGGGGAGATGTGCTCA 60.690 57.143 0.00 0.00 45.81 4.26
198 199 2.324541 GAGTAGGGGAGATGTGCTCAT 58.675 52.381 0.00 0.00 45.81 2.90
210 211 4.941657 GATGTGCTCATCATCTACACAGA 58.058 43.478 20.95 0.00 46.78 3.41
211 212 5.539979 GATGTGCTCATCATCTACACAGAT 58.460 41.667 20.95 0.00 46.78 2.90
212 213 6.661304 ATGTGCTCATCATCTACACAGATA 57.339 37.500 0.00 0.00 43.78 1.98
213 214 5.836347 TGTGCTCATCATCTACACAGATAC 58.164 41.667 0.00 0.00 39.62 2.24
214 215 4.914504 GTGCTCATCATCTACACAGATACG 59.085 45.833 0.00 0.00 39.62 3.06
215 216 4.580580 TGCTCATCATCTACACAGATACGT 59.419 41.667 0.00 0.00 39.62 3.57
216 217 5.067805 TGCTCATCATCTACACAGATACGTT 59.932 40.000 0.00 0.00 39.62 3.99
217 218 5.400782 GCTCATCATCTACACAGATACGTTG 59.599 44.000 0.00 0.00 39.62 4.10
218 219 6.693315 TCATCATCTACACAGATACGTTGA 57.307 37.500 0.00 0.00 39.62 3.18
219 220 6.495706 TCATCATCTACACAGATACGTTGAC 58.504 40.000 0.00 0.00 39.62 3.18
220 221 6.318900 TCATCATCTACACAGATACGTTGACT 59.681 38.462 0.00 0.00 39.62 3.41
221 222 5.880341 TCATCTACACAGATACGTTGACTG 58.120 41.667 0.00 3.97 39.62 3.51
222 223 5.414765 TCATCTACACAGATACGTTGACTGT 59.585 40.000 13.43 13.43 44.15 3.55
223 224 5.292671 TCTACACAGATACGTTGACTGTC 57.707 43.478 15.40 0.00 41.93 3.51
224 225 5.001874 TCTACACAGATACGTTGACTGTCT 58.998 41.667 15.40 9.47 41.93 3.41
225 226 6.168389 TCTACACAGATACGTTGACTGTCTA 58.832 40.000 15.40 0.00 41.93 2.59
226 227 5.298197 ACACAGATACGTTGACTGTCTAG 57.702 43.478 15.40 9.74 41.93 2.43
227 228 4.099120 CACAGATACGTTGACTGTCTAGC 58.901 47.826 15.40 0.00 41.93 3.42
228 229 3.128938 ACAGATACGTTGACTGTCTAGCC 59.871 47.826 9.51 0.00 40.19 3.93
229 230 3.378742 CAGATACGTTGACTGTCTAGCCT 59.621 47.826 9.51 0.00 0.00 4.58
230 231 4.017808 AGATACGTTGACTGTCTAGCCTT 58.982 43.478 9.51 0.00 0.00 4.35
231 232 2.440539 ACGTTGACTGTCTAGCCTTG 57.559 50.000 9.51 0.00 0.00 3.61
232 233 1.071605 CGTTGACTGTCTAGCCTTGC 58.928 55.000 9.51 0.00 0.00 4.01
233 234 1.071605 GTTGACTGTCTAGCCTTGCG 58.928 55.000 9.51 0.00 0.00 4.85
234 235 0.679505 TTGACTGTCTAGCCTTGCGT 59.320 50.000 9.51 0.00 0.00 5.24
235 236 0.679505 TGACTGTCTAGCCTTGCGTT 59.320 50.000 9.51 0.00 0.00 4.84
236 237 1.071605 GACTGTCTAGCCTTGCGTTG 58.928 55.000 0.00 0.00 0.00 4.10
237 238 0.393077 ACTGTCTAGCCTTGCGTTGT 59.607 50.000 0.00 0.00 0.00 3.32
238 239 1.071605 CTGTCTAGCCTTGCGTTGTC 58.928 55.000 0.00 0.00 0.00 3.18
239 240 0.679505 TGTCTAGCCTTGCGTTGTCT 59.320 50.000 0.00 0.00 0.00 3.41
240 241 1.070134 TGTCTAGCCTTGCGTTGTCTT 59.930 47.619 0.00 0.00 0.00 3.01
241 242 1.461127 GTCTAGCCTTGCGTTGTCTTG 59.539 52.381 0.00 0.00 0.00 3.02
242 243 0.166814 CTAGCCTTGCGTTGTCTTGC 59.833 55.000 0.00 0.00 0.00 4.01
243 244 1.565156 TAGCCTTGCGTTGTCTTGCG 61.565 55.000 0.00 0.00 0.00 4.85
244 245 2.892334 GCCTTGCGTTGTCTTGCGA 61.892 57.895 0.00 0.00 0.00 5.10
245 246 1.646540 CCTTGCGTTGTCTTGCGAA 59.353 52.632 0.00 0.00 0.00 4.70
246 247 0.238289 CCTTGCGTTGTCTTGCGAAT 59.762 50.000 0.00 0.00 0.00 3.34
247 248 1.595609 CTTGCGTTGTCTTGCGAATC 58.404 50.000 0.00 0.00 0.00 2.52
248 249 1.195448 CTTGCGTTGTCTTGCGAATCT 59.805 47.619 0.00 0.00 0.00 2.40
249 250 1.225855 TGCGTTGTCTTGCGAATCTT 58.774 45.000 0.00 0.00 0.00 2.40
250 251 1.069973 TGCGTTGTCTTGCGAATCTTG 60.070 47.619 0.00 0.00 0.00 3.02
251 252 1.069906 GCGTTGTCTTGCGAATCTTGT 60.070 47.619 0.00 0.00 0.00 3.16
252 253 2.602217 GCGTTGTCTTGCGAATCTTGTT 60.602 45.455 0.00 0.00 0.00 2.83
253 254 2.966708 CGTTGTCTTGCGAATCTTGTTG 59.033 45.455 0.00 0.00 0.00 3.33
254 255 3.300009 GTTGTCTTGCGAATCTTGTTGG 58.700 45.455 0.00 0.00 0.00 3.77
255 256 1.879380 TGTCTTGCGAATCTTGTTGGG 59.121 47.619 0.00 0.00 0.00 4.12
256 257 2.151202 GTCTTGCGAATCTTGTTGGGA 58.849 47.619 0.00 0.00 0.00 4.37
257 258 2.160417 GTCTTGCGAATCTTGTTGGGAG 59.840 50.000 0.00 0.00 0.00 4.30
258 259 1.470098 CTTGCGAATCTTGTTGGGAGG 59.530 52.381 0.00 0.00 0.00 4.30
259 260 0.690192 TGCGAATCTTGTTGGGAGGA 59.310 50.000 0.00 0.00 0.00 3.71
260 261 1.281867 TGCGAATCTTGTTGGGAGGAT 59.718 47.619 0.00 0.00 0.00 3.24
261 262 1.672881 GCGAATCTTGTTGGGAGGATG 59.327 52.381 0.00 0.00 0.00 3.51
262 263 2.292267 CGAATCTTGTTGGGAGGATGG 58.708 52.381 0.00 0.00 0.00 3.51
263 264 2.027385 GAATCTTGTTGGGAGGATGGC 58.973 52.381 0.00 0.00 0.00 4.40
264 265 1.002069 ATCTTGTTGGGAGGATGGCA 58.998 50.000 0.00 0.00 0.00 4.92
265 266 0.329261 TCTTGTTGGGAGGATGGCAG 59.671 55.000 0.00 0.00 0.00 4.85
266 267 0.329261 CTTGTTGGGAGGATGGCAGA 59.671 55.000 0.00 0.00 0.00 4.26
267 268 0.329261 TTGTTGGGAGGATGGCAGAG 59.671 55.000 0.00 0.00 0.00 3.35
268 269 0.842030 TGTTGGGAGGATGGCAGAGT 60.842 55.000 0.00 0.00 0.00 3.24
269 270 1.204146 GTTGGGAGGATGGCAGAGTA 58.796 55.000 0.00 0.00 0.00 2.59
270 271 1.139853 GTTGGGAGGATGGCAGAGTAG 59.860 57.143 0.00 0.00 0.00 2.57
271 272 0.636647 TGGGAGGATGGCAGAGTAGA 59.363 55.000 0.00 0.00 0.00 2.59
272 273 1.008327 TGGGAGGATGGCAGAGTAGAA 59.992 52.381 0.00 0.00 0.00 2.10
273 274 2.334023 GGGAGGATGGCAGAGTAGAAT 58.666 52.381 0.00 0.00 0.00 2.40
274 275 2.301583 GGGAGGATGGCAGAGTAGAATC 59.698 54.545 0.00 0.00 0.00 2.52
275 276 3.238597 GGAGGATGGCAGAGTAGAATCT 58.761 50.000 0.00 0.00 0.00 2.40
277 278 3.640967 GAGGATGGCAGAGTAGAATCTGT 59.359 47.826 8.61 0.00 46.93 3.41
278 279 4.809193 AGGATGGCAGAGTAGAATCTGTA 58.191 43.478 8.61 0.00 46.93 2.74
279 280 4.832266 AGGATGGCAGAGTAGAATCTGTAG 59.168 45.833 8.61 0.00 46.93 2.74
280 281 4.830046 GGATGGCAGAGTAGAATCTGTAGA 59.170 45.833 8.61 0.00 46.93 2.59
281 282 5.048083 GGATGGCAGAGTAGAATCTGTAGAG 60.048 48.000 8.61 0.00 46.93 2.43
282 283 5.117406 TGGCAGAGTAGAATCTGTAGAGA 57.883 43.478 8.61 0.00 46.93 3.10
283 284 5.510430 TGGCAGAGTAGAATCTGTAGAGAA 58.490 41.667 8.61 0.00 46.93 2.87
284 285 5.358442 TGGCAGAGTAGAATCTGTAGAGAAC 59.642 44.000 8.61 0.00 46.93 3.01
285 286 5.221165 GGCAGAGTAGAATCTGTAGAGAACC 60.221 48.000 8.61 0.00 46.93 3.62
286 287 5.592688 GCAGAGTAGAATCTGTAGAGAACCT 59.407 44.000 8.61 0.00 46.93 3.50
287 288 6.238648 GCAGAGTAGAATCTGTAGAGAACCTC 60.239 46.154 8.61 0.00 46.93 3.85
288 289 6.262273 CAGAGTAGAATCTGTAGAGAACCTCC 59.738 46.154 0.00 0.00 41.52 4.30
289 290 5.127491 AGTAGAATCTGTAGAGAACCTCCG 58.873 45.833 0.00 0.00 0.00 4.63
290 291 3.970842 AGAATCTGTAGAGAACCTCCGT 58.029 45.455 0.00 0.00 0.00 4.69
291 292 4.345854 AGAATCTGTAGAGAACCTCCGTT 58.654 43.478 0.00 0.00 33.88 4.44
292 293 4.773149 AGAATCTGTAGAGAACCTCCGTTT 59.227 41.667 0.00 0.00 30.30 3.60
293 294 4.722361 ATCTGTAGAGAACCTCCGTTTC 57.278 45.455 0.00 0.00 30.30 2.78
294 295 3.493334 TCTGTAGAGAACCTCCGTTTCA 58.507 45.455 0.00 0.00 30.30 2.69
295 296 3.506455 TCTGTAGAGAACCTCCGTTTCAG 59.494 47.826 0.00 0.00 30.30 3.02
296 297 3.228453 TGTAGAGAACCTCCGTTTCAGT 58.772 45.455 0.00 0.00 30.30 3.41
297 298 3.640029 TGTAGAGAACCTCCGTTTCAGTT 59.360 43.478 0.00 0.00 30.30 3.16
298 299 3.388345 AGAGAACCTCCGTTTCAGTTC 57.612 47.619 0.00 0.00 39.09 3.01
300 301 3.388345 AGAACCTCCGTTTCAGTTCTC 57.612 47.619 0.00 0.00 44.19 2.87
301 302 2.059541 GAACCTCCGTTTCAGTTCTCG 58.940 52.381 0.00 0.00 36.52 4.04
302 303 0.317479 ACCTCCGTTTCAGTTCTCGG 59.683 55.000 0.00 0.00 43.65 4.63
305 306 2.433868 TCCGTTTCAGTTCTCGGAAG 57.566 50.000 2.66 0.00 46.96 3.46
306 307 1.000506 TCCGTTTCAGTTCTCGGAAGG 59.999 52.381 2.66 0.00 46.96 3.46
307 308 1.000506 CCGTTTCAGTTCTCGGAAGGA 59.999 52.381 0.00 0.00 44.86 3.36
308 309 2.059541 CGTTTCAGTTCTCGGAAGGAC 58.940 52.381 0.00 0.00 0.00 3.85
309 310 2.414806 GTTTCAGTTCTCGGAAGGACC 58.585 52.381 0.00 0.00 30.36 4.46
310 311 1.712056 TTCAGTTCTCGGAAGGACCA 58.288 50.000 0.00 0.00 38.90 4.02
311 312 0.966920 TCAGTTCTCGGAAGGACCAC 59.033 55.000 0.00 0.00 38.90 4.16
312 313 0.037232 CAGTTCTCGGAAGGACCACC 60.037 60.000 0.00 0.00 38.90 4.61
313 314 0.471211 AGTTCTCGGAAGGACCACCA 60.471 55.000 8.18 0.00 38.90 4.17
898 914 7.412853 AGGTTTAGCTTGTTTCCTTTTTGTA 57.587 32.000 0.00 0.00 0.00 2.41
900 916 6.477688 GGTTTAGCTTGTTTCCTTTTTGTACC 59.522 38.462 0.00 0.00 0.00 3.34
941 957 3.012047 TCTCTAGCCACTAACCCCTGTTA 59.988 47.826 0.00 0.00 35.87 2.41
1244 1268 3.067106 CTGAATGTCAGCGTGGTTACTT 58.933 45.455 0.00 0.00 37.72 2.24
1253 1277 1.207329 GCGTGGTTACTTCCATCCTCT 59.793 52.381 0.00 0.00 39.81 3.69
1275 1299 3.071312 TGGATTGTTTTGGCATGAGCTTT 59.929 39.130 0.00 0.00 41.70 3.51
1430 1454 2.114616 AGAGGAGAGCCACAACTATGG 58.885 52.381 0.00 0.00 43.26 2.74
1599 1638 3.491267 CACTTTTGAGTCTCGAGTTCACC 59.509 47.826 13.13 4.53 0.00 4.02
1898 1937 1.888512 TCAAGAGCTGCAATTCCCAAC 59.111 47.619 1.02 0.00 0.00 3.77
2006 2048 6.553953 TTTACCTATTGTCATACCAGAGCA 57.446 37.500 0.00 0.00 0.00 4.26
2143 2185 9.897040 TGCTTGGATATGATCATATATACCCTA 57.103 33.333 24.86 17.38 34.36 3.53
2640 2692 5.411781 CGAGTGCTACTTCCTATGAAAACT 58.588 41.667 0.00 0.00 0.00 2.66
2947 3006 6.156949 ACACCTAGATCACCATGTTTAGATGT 59.843 38.462 0.00 0.00 0.00 3.06
3097 3156 7.908082 TGCTTATGCGTTGTTCATTTAAGATAC 59.092 33.333 0.00 0.00 43.34 2.24
3196 3256 6.548251 GGGTTAGCTTGGGCAGTAATTATTAA 59.452 38.462 0.00 0.00 41.70 1.40
3197 3257 7.232737 GGGTTAGCTTGGGCAGTAATTATTAAT 59.767 37.037 0.00 0.00 41.70 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 5.680619 ACATGTGTTCCTGTTTCTAGAACA 58.319 37.500 4.18 6.17 45.60 3.18
22 23 5.758296 TGACATGTGTTCCTGTTTCTAGAAC 59.242 40.000 1.15 1.55 40.23 3.01
23 24 5.924356 TGACATGTGTTCCTGTTTCTAGAA 58.076 37.500 1.15 0.00 0.00 2.10
24 25 5.545063 TGACATGTGTTCCTGTTTCTAGA 57.455 39.130 1.15 0.00 0.00 2.43
25 26 8.498054 AATATGACATGTGTTCCTGTTTCTAG 57.502 34.615 1.15 0.00 0.00 2.43
26 27 8.100164 TGAATATGACATGTGTTCCTGTTTCTA 58.900 33.333 1.15 0.00 0.00 2.10
27 28 6.942005 TGAATATGACATGTGTTCCTGTTTCT 59.058 34.615 1.15 0.00 0.00 2.52
28 29 7.023575 GTGAATATGACATGTGTTCCTGTTTC 58.976 38.462 1.15 0.00 0.00 2.78
29 30 6.489700 TGTGAATATGACATGTGTTCCTGTTT 59.510 34.615 1.15 0.00 0.00 2.83
30 31 6.003326 TGTGAATATGACATGTGTTCCTGTT 58.997 36.000 1.15 0.00 0.00 3.16
31 32 5.412594 GTGTGAATATGACATGTGTTCCTGT 59.587 40.000 1.15 0.00 0.00 4.00
32 33 5.446340 CGTGTGAATATGACATGTGTTCCTG 60.446 44.000 1.15 0.00 0.00 3.86
33 34 4.631377 CGTGTGAATATGACATGTGTTCCT 59.369 41.667 1.15 0.00 0.00 3.36
34 35 4.727734 GCGTGTGAATATGACATGTGTTCC 60.728 45.833 1.15 0.00 33.58 3.62
35 36 4.142924 TGCGTGTGAATATGACATGTGTTC 60.143 41.667 1.15 3.09 33.58 3.18
36 37 3.750652 TGCGTGTGAATATGACATGTGTT 59.249 39.130 1.15 0.00 33.58 3.32
37 38 3.333804 TGCGTGTGAATATGACATGTGT 58.666 40.909 1.15 0.00 33.58 3.72
38 39 4.541085 ATGCGTGTGAATATGACATGTG 57.459 40.909 1.15 0.00 33.58 3.21
39 40 6.260714 ACATAATGCGTGTGAATATGACATGT 59.739 34.615 0.00 0.00 33.58 3.21
40 41 6.661669 ACATAATGCGTGTGAATATGACATG 58.338 36.000 0.00 0.00 34.08 3.21
41 42 6.866010 ACATAATGCGTGTGAATATGACAT 57.134 33.333 2.33 0.00 0.00 3.06
51 52 5.732647 GCTTACTTTACACATAATGCGTGTG 59.267 40.000 6.21 4.83 46.72 3.82
53 54 5.863898 TGCTTACTTTACACATAATGCGTG 58.136 37.500 0.00 0.00 40.32 5.34
54 55 5.872617 TCTGCTTACTTTACACATAATGCGT 59.127 36.000 0.00 0.00 0.00 5.24
55 56 6.344572 TCTGCTTACTTTACACATAATGCG 57.655 37.500 0.00 0.00 0.00 4.73
56 57 7.641411 CACATCTGCTTACTTTACACATAATGC 59.359 37.037 0.00 0.00 0.00 3.56
57 58 8.882736 TCACATCTGCTTACTTTACACATAATG 58.117 33.333 0.00 0.00 0.00 1.90
58 59 9.618890 ATCACATCTGCTTACTTTACACATAAT 57.381 29.630 0.00 0.00 0.00 1.28
59 60 9.448438 AATCACATCTGCTTACTTTACACATAA 57.552 29.630 0.00 0.00 0.00 1.90
60 61 9.098355 GAATCACATCTGCTTACTTTACACATA 57.902 33.333 0.00 0.00 0.00 2.29
61 62 7.607607 TGAATCACATCTGCTTACTTTACACAT 59.392 33.333 0.00 0.00 0.00 3.21
62 63 6.934083 TGAATCACATCTGCTTACTTTACACA 59.066 34.615 0.00 0.00 0.00 3.72
63 64 7.364522 TGAATCACATCTGCTTACTTTACAC 57.635 36.000 0.00 0.00 0.00 2.90
64 65 7.443879 TGTTGAATCACATCTGCTTACTTTACA 59.556 33.333 0.00 0.00 0.00 2.41
65 66 7.806690 TGTTGAATCACATCTGCTTACTTTAC 58.193 34.615 0.00 0.00 0.00 2.01
66 67 7.977789 TGTTGAATCACATCTGCTTACTTTA 57.022 32.000 0.00 0.00 0.00 1.85
67 68 6.882610 TGTTGAATCACATCTGCTTACTTT 57.117 33.333 0.00 0.00 0.00 2.66
68 69 6.882610 TTGTTGAATCACATCTGCTTACTT 57.117 33.333 0.00 0.00 0.00 2.24
69 70 6.488006 ACTTTGTTGAATCACATCTGCTTACT 59.512 34.615 0.00 0.00 0.00 2.24
70 71 6.672147 ACTTTGTTGAATCACATCTGCTTAC 58.328 36.000 0.00 0.00 0.00 2.34
71 72 6.882610 ACTTTGTTGAATCACATCTGCTTA 57.117 33.333 0.00 0.00 0.00 3.09
72 73 5.779529 ACTTTGTTGAATCACATCTGCTT 57.220 34.783 0.00 0.00 0.00 3.91
73 74 5.779529 AACTTTGTTGAATCACATCTGCT 57.220 34.783 0.00 0.00 0.00 4.24
74 75 6.902341 TCTAACTTTGTTGAATCACATCTGC 58.098 36.000 0.00 0.00 0.00 4.26
75 76 7.536622 GCTTCTAACTTTGTTGAATCACATCTG 59.463 37.037 0.00 0.00 0.00 2.90
76 77 7.229306 TGCTTCTAACTTTGTTGAATCACATCT 59.771 33.333 0.00 0.00 0.00 2.90
77 78 7.362662 TGCTTCTAACTTTGTTGAATCACATC 58.637 34.615 0.00 0.00 0.00 3.06
78 79 7.275888 TGCTTCTAACTTTGTTGAATCACAT 57.724 32.000 0.00 0.00 0.00 3.21
79 80 6.691754 TGCTTCTAACTTTGTTGAATCACA 57.308 33.333 0.00 0.00 0.00 3.58
80 81 9.334693 CTATTGCTTCTAACTTTGTTGAATCAC 57.665 33.333 0.00 0.00 0.00 3.06
81 82 9.283768 TCTATTGCTTCTAACTTTGTTGAATCA 57.716 29.630 0.00 0.00 0.00 2.57
84 85 8.076178 GCTTCTATTGCTTCTAACTTTGTTGAA 58.924 33.333 0.00 0.00 0.00 2.69
85 86 7.445402 AGCTTCTATTGCTTCTAACTTTGTTGA 59.555 33.333 0.00 0.00 37.52 3.18
86 87 7.588512 AGCTTCTATTGCTTCTAACTTTGTTG 58.411 34.615 0.00 0.00 37.52 3.33
87 88 7.751768 AGCTTCTATTGCTTCTAACTTTGTT 57.248 32.000 0.00 0.00 37.52 2.83
88 89 8.314751 TCTAGCTTCTATTGCTTCTAACTTTGT 58.685 33.333 0.00 0.00 41.46 2.83
89 90 8.599774 GTCTAGCTTCTATTGCTTCTAACTTTG 58.400 37.037 0.00 0.00 41.46 2.77
90 91 8.314751 TGTCTAGCTTCTATTGCTTCTAACTTT 58.685 33.333 0.00 0.00 41.46 2.66
91 92 7.841956 TGTCTAGCTTCTATTGCTTCTAACTT 58.158 34.615 0.00 0.00 41.46 2.66
92 93 7.411486 TGTCTAGCTTCTATTGCTTCTAACT 57.589 36.000 0.00 0.00 41.46 2.24
93 94 7.923344 TGATGTCTAGCTTCTATTGCTTCTAAC 59.077 37.037 0.00 0.00 41.46 2.34
94 95 8.011844 TGATGTCTAGCTTCTATTGCTTCTAA 57.988 34.615 0.00 0.00 41.46 2.10
95 96 7.588497 TGATGTCTAGCTTCTATTGCTTCTA 57.412 36.000 0.00 0.00 41.46 2.10
96 97 6.477053 TGATGTCTAGCTTCTATTGCTTCT 57.523 37.500 0.00 0.00 41.46 2.85
97 98 7.869937 TGTATGATGTCTAGCTTCTATTGCTTC 59.130 37.037 0.00 0.00 41.46 3.86
98 99 7.655328 GTGTATGATGTCTAGCTTCTATTGCTT 59.345 37.037 0.00 0.00 41.46 3.91
99 100 7.151308 GTGTATGATGTCTAGCTTCTATTGCT 58.849 38.462 0.00 0.00 43.79 3.91
100 101 6.925718 TGTGTATGATGTCTAGCTTCTATTGC 59.074 38.462 0.00 0.00 0.00 3.56
101 102 8.759641 GTTGTGTATGATGTCTAGCTTCTATTG 58.240 37.037 0.00 0.00 0.00 1.90
102 103 8.478066 TGTTGTGTATGATGTCTAGCTTCTATT 58.522 33.333 0.00 0.00 0.00 1.73
103 104 8.011844 TGTTGTGTATGATGTCTAGCTTCTAT 57.988 34.615 0.00 0.00 0.00 1.98
104 105 7.404671 TGTTGTGTATGATGTCTAGCTTCTA 57.595 36.000 0.00 0.00 0.00 2.10
105 106 6.286240 TGTTGTGTATGATGTCTAGCTTCT 57.714 37.500 0.00 0.00 0.00 2.85
106 107 6.510799 GCATGTTGTGTATGATGTCTAGCTTC 60.511 42.308 0.00 0.00 0.00 3.86
107 108 5.295292 GCATGTTGTGTATGATGTCTAGCTT 59.705 40.000 0.00 0.00 0.00 3.74
108 109 4.813161 GCATGTTGTGTATGATGTCTAGCT 59.187 41.667 0.00 0.00 0.00 3.32
109 110 4.571984 TGCATGTTGTGTATGATGTCTAGC 59.428 41.667 0.00 0.00 0.00 3.42
110 111 6.457392 GGTTGCATGTTGTGTATGATGTCTAG 60.457 42.308 0.00 0.00 0.00 2.43
111 112 5.353956 GGTTGCATGTTGTGTATGATGTCTA 59.646 40.000 0.00 0.00 0.00 2.59
112 113 4.156556 GGTTGCATGTTGTGTATGATGTCT 59.843 41.667 0.00 0.00 0.00 3.41
113 114 4.082841 TGGTTGCATGTTGTGTATGATGTC 60.083 41.667 0.00 0.00 0.00 3.06
114 115 3.825585 TGGTTGCATGTTGTGTATGATGT 59.174 39.130 0.00 0.00 0.00 3.06
115 116 4.168014 GTGGTTGCATGTTGTGTATGATG 58.832 43.478 0.00 0.00 0.00 3.07
116 117 3.825585 TGTGGTTGCATGTTGTGTATGAT 59.174 39.130 0.00 0.00 0.00 2.45
117 118 3.217626 TGTGGTTGCATGTTGTGTATGA 58.782 40.909 0.00 0.00 0.00 2.15
118 119 3.639716 TGTGGTTGCATGTTGTGTATG 57.360 42.857 0.00 0.00 0.00 2.39
119 120 7.637631 TTATATGTGGTTGCATGTTGTGTAT 57.362 32.000 0.00 0.00 0.00 2.29
120 121 7.637631 ATTATATGTGGTTGCATGTTGTGTA 57.362 32.000 0.00 0.00 0.00 2.90
121 122 5.973899 TTATATGTGGTTGCATGTTGTGT 57.026 34.783 0.00 0.00 0.00 3.72
122 123 7.644945 CACTATTATATGTGGTTGCATGTTGTG 59.355 37.037 0.00 0.00 0.00 3.33
123 124 7.681782 GCACTATTATATGTGGTTGCATGTTGT 60.682 37.037 0.00 0.00 34.99 3.32
124 125 6.638063 GCACTATTATATGTGGTTGCATGTTG 59.362 38.462 0.00 0.00 34.99 3.33
125 126 6.239008 GGCACTATTATATGTGGTTGCATGTT 60.239 38.462 0.00 0.00 34.99 2.71
126 127 5.241506 GGCACTATTATATGTGGTTGCATGT 59.758 40.000 0.00 0.00 34.99 3.21
127 128 5.241285 TGGCACTATTATATGTGGTTGCATG 59.759 40.000 0.00 0.00 34.99 4.06
128 129 5.384336 TGGCACTATTATATGTGGTTGCAT 58.616 37.500 0.00 0.00 34.99 3.96
129 130 4.786425 TGGCACTATTATATGTGGTTGCA 58.214 39.130 0.00 0.00 34.99 4.08
130 131 5.299279 ACTTGGCACTATTATATGTGGTTGC 59.701 40.000 0.00 0.00 34.99 4.17
131 132 6.942532 ACTTGGCACTATTATATGTGGTTG 57.057 37.500 0.00 0.00 34.99 3.77
132 133 8.491134 TCTAACTTGGCACTATTATATGTGGTT 58.509 33.333 0.00 0.00 34.99 3.67
133 134 8.029782 TCTAACTTGGCACTATTATATGTGGT 57.970 34.615 0.00 0.00 34.99 4.16
134 135 7.118390 GCTCTAACTTGGCACTATTATATGTGG 59.882 40.741 0.00 0.00 34.99 4.17
135 136 7.657354 TGCTCTAACTTGGCACTATTATATGTG 59.343 37.037 0.00 0.00 37.26 3.21
136 137 7.735917 TGCTCTAACTTGGCACTATTATATGT 58.264 34.615 0.00 0.00 0.00 2.29
137 138 8.607441 TTGCTCTAACTTGGCACTATTATATG 57.393 34.615 0.00 0.00 35.62 1.78
138 139 7.389053 GCTTGCTCTAACTTGGCACTATTATAT 59.611 37.037 0.00 0.00 35.62 0.86
139 140 6.706270 GCTTGCTCTAACTTGGCACTATTATA 59.294 38.462 0.00 0.00 35.62 0.98
140 141 5.529060 GCTTGCTCTAACTTGGCACTATTAT 59.471 40.000 0.00 0.00 35.62 1.28
141 142 4.876107 GCTTGCTCTAACTTGGCACTATTA 59.124 41.667 0.00 0.00 35.62 0.98
142 143 3.691609 GCTTGCTCTAACTTGGCACTATT 59.308 43.478 0.00 0.00 35.62 1.73
143 144 3.274288 GCTTGCTCTAACTTGGCACTAT 58.726 45.455 0.00 0.00 35.62 2.12
144 145 2.038426 TGCTTGCTCTAACTTGGCACTA 59.962 45.455 0.00 0.00 35.62 2.74
145 146 1.202806 TGCTTGCTCTAACTTGGCACT 60.203 47.619 0.00 0.00 35.62 4.40
146 147 1.068954 GTGCTTGCTCTAACTTGGCAC 60.069 52.381 0.00 0.00 40.91 5.01
147 148 1.238439 GTGCTTGCTCTAACTTGGCA 58.762 50.000 0.00 0.00 0.00 4.92
148 149 1.238439 TGTGCTTGCTCTAACTTGGC 58.762 50.000 0.00 0.00 0.00 4.52
149 150 2.816087 ACATGTGCTTGCTCTAACTTGG 59.184 45.455 0.00 0.00 0.00 3.61
150 151 3.499537 TCACATGTGCTTGCTCTAACTTG 59.500 43.478 21.38 0.00 0.00 3.16
151 152 3.743521 TCACATGTGCTTGCTCTAACTT 58.256 40.909 21.38 0.00 0.00 2.66
152 153 3.407424 TCACATGTGCTTGCTCTAACT 57.593 42.857 21.38 0.00 0.00 2.24
153 154 3.181503 CCATCACATGTGCTTGCTCTAAC 60.182 47.826 21.38 0.00 0.00 2.34
154 155 3.011818 CCATCACATGTGCTTGCTCTAA 58.988 45.455 21.38 0.43 0.00 2.10
155 156 2.026915 ACCATCACATGTGCTTGCTCTA 60.027 45.455 21.38 1.22 0.00 2.43
156 157 1.271762 ACCATCACATGTGCTTGCTCT 60.272 47.619 21.38 4.00 0.00 4.09
157 158 1.135489 CACCATCACATGTGCTTGCTC 60.135 52.381 21.38 0.00 0.00 4.26
158 159 0.885879 CACCATCACATGTGCTTGCT 59.114 50.000 21.38 5.86 0.00 3.91
159 160 0.108992 CCACCATCACATGTGCTTGC 60.109 55.000 21.38 0.00 0.00 4.01
160 161 1.471287 CTCCACCATCACATGTGCTTG 59.529 52.381 21.38 18.82 0.00 4.01
161 162 1.074405 ACTCCACCATCACATGTGCTT 59.926 47.619 21.38 8.10 0.00 3.91
162 163 0.694771 ACTCCACCATCACATGTGCT 59.305 50.000 21.38 8.92 0.00 4.40
163 164 2.283298 CTACTCCACCATCACATGTGC 58.717 52.381 21.38 0.00 0.00 4.57
164 165 2.420547 CCCTACTCCACCATCACATGTG 60.421 54.545 20.18 20.18 0.00 3.21
165 166 1.839994 CCCTACTCCACCATCACATGT 59.160 52.381 0.00 0.00 0.00 3.21
166 167 1.141657 CCCCTACTCCACCATCACATG 59.858 57.143 0.00 0.00 0.00 3.21
167 168 1.009552 TCCCCTACTCCACCATCACAT 59.990 52.381 0.00 0.00 0.00 3.21
168 169 0.415830 TCCCCTACTCCACCATCACA 59.584 55.000 0.00 0.00 0.00 3.58
169 170 1.123928 CTCCCCTACTCCACCATCAC 58.876 60.000 0.00 0.00 0.00 3.06
170 171 1.015609 TCTCCCCTACTCCACCATCA 58.984 55.000 0.00 0.00 0.00 3.07
171 172 1.974236 CATCTCCCCTACTCCACCATC 59.026 57.143 0.00 0.00 0.00 3.51
172 173 1.295292 ACATCTCCCCTACTCCACCAT 59.705 52.381 0.00 0.00 0.00 3.55
173 174 0.716591 ACATCTCCCCTACTCCACCA 59.283 55.000 0.00 0.00 0.00 4.17
174 175 1.123928 CACATCTCCCCTACTCCACC 58.876 60.000 0.00 0.00 0.00 4.61
175 176 0.466124 GCACATCTCCCCTACTCCAC 59.534 60.000 0.00 0.00 0.00 4.02
176 177 0.339859 AGCACATCTCCCCTACTCCA 59.660 55.000 0.00 0.00 0.00 3.86
177 178 1.044611 GAGCACATCTCCCCTACTCC 58.955 60.000 0.00 0.00 35.77 3.85
178 179 1.781786 TGAGCACATCTCCCCTACTC 58.218 55.000 0.00 0.00 41.18 2.59
179 180 2.324541 GATGAGCACATCTCCCCTACT 58.675 52.381 15.90 0.00 46.47 2.57
180 181 2.829741 GATGAGCACATCTCCCCTAC 57.170 55.000 15.90 0.00 46.47 3.18
188 189 5.539979 ATCTGTGTAGATGATGAGCACATC 58.460 41.667 16.26 16.26 42.04 3.06
189 190 5.548181 ATCTGTGTAGATGATGAGCACAT 57.452 39.130 0.00 0.00 42.04 3.21
190 191 5.506317 CGTATCTGTGTAGATGATGAGCACA 60.506 44.000 0.00 0.00 43.41 4.57
191 192 4.914504 CGTATCTGTGTAGATGATGAGCAC 59.085 45.833 0.00 0.00 43.41 4.40
192 193 4.580580 ACGTATCTGTGTAGATGATGAGCA 59.419 41.667 0.00 0.00 43.41 4.26
193 194 5.114785 ACGTATCTGTGTAGATGATGAGC 57.885 43.478 0.00 0.00 43.41 4.26
194 195 6.634837 GTCAACGTATCTGTGTAGATGATGAG 59.365 42.308 0.00 0.00 43.41 2.90
195 196 6.318900 AGTCAACGTATCTGTGTAGATGATGA 59.681 38.462 0.00 0.00 43.41 2.92
196 197 6.416161 CAGTCAACGTATCTGTGTAGATGATG 59.584 42.308 0.00 0.00 43.41 3.07
197 198 6.095580 ACAGTCAACGTATCTGTGTAGATGAT 59.904 38.462 15.77 0.00 43.41 2.45
198 199 5.414765 ACAGTCAACGTATCTGTGTAGATGA 59.585 40.000 15.77 0.00 43.41 2.92
199 200 5.641709 ACAGTCAACGTATCTGTGTAGATG 58.358 41.667 15.77 0.00 43.41 2.90
200 201 5.648526 AGACAGTCAACGTATCTGTGTAGAT 59.351 40.000 19.61 0.00 45.45 1.98
201 202 5.001874 AGACAGTCAACGTATCTGTGTAGA 58.998 41.667 19.61 0.00 41.58 2.59
202 203 5.298197 AGACAGTCAACGTATCTGTGTAG 57.702 43.478 19.61 0.28 41.58 2.74
203 204 5.163784 GCTAGACAGTCAACGTATCTGTGTA 60.164 44.000 19.61 18.15 41.58 2.90
204 205 4.379603 GCTAGACAGTCAACGTATCTGTGT 60.380 45.833 19.61 18.04 41.58 3.72
205 206 4.099120 GCTAGACAGTCAACGTATCTGTG 58.901 47.826 19.61 10.25 41.58 3.66
206 207 3.128938 GGCTAGACAGTCAACGTATCTGT 59.871 47.826 16.25 16.25 43.72 3.41
207 208 3.378742 AGGCTAGACAGTCAACGTATCTG 59.621 47.826 0.00 11.27 35.60 2.90
208 209 3.622630 AGGCTAGACAGTCAACGTATCT 58.377 45.455 0.00 0.00 0.00 1.98
209 210 4.106197 CAAGGCTAGACAGTCAACGTATC 58.894 47.826 0.00 0.00 0.00 2.24
210 211 3.676324 GCAAGGCTAGACAGTCAACGTAT 60.676 47.826 0.00 0.00 0.00 3.06
211 212 2.352421 GCAAGGCTAGACAGTCAACGTA 60.352 50.000 0.00 0.00 0.00 3.57
212 213 1.605712 GCAAGGCTAGACAGTCAACGT 60.606 52.381 0.00 0.00 0.00 3.99
213 214 1.071605 GCAAGGCTAGACAGTCAACG 58.928 55.000 0.00 0.00 0.00 4.10
214 215 1.071605 CGCAAGGCTAGACAGTCAAC 58.928 55.000 0.00 0.00 0.00 3.18
215 216 0.679505 ACGCAAGGCTAGACAGTCAA 59.320 50.000 0.00 0.00 46.39 3.18
216 217 0.679505 AACGCAAGGCTAGACAGTCA 59.320 50.000 0.00 0.00 46.39 3.41
217 218 1.071605 CAACGCAAGGCTAGACAGTC 58.928 55.000 0.00 0.00 46.39 3.51
218 219 0.393077 ACAACGCAAGGCTAGACAGT 59.607 50.000 0.00 0.00 46.39 3.55
219 220 1.071605 GACAACGCAAGGCTAGACAG 58.928 55.000 0.00 0.00 46.39 3.51
220 221 0.679505 AGACAACGCAAGGCTAGACA 59.320 50.000 0.00 0.00 46.39 3.41
221 222 1.461127 CAAGACAACGCAAGGCTAGAC 59.539 52.381 0.00 0.00 46.39 2.59
222 223 1.795768 CAAGACAACGCAAGGCTAGA 58.204 50.000 0.00 0.00 46.39 2.43
223 224 0.166814 GCAAGACAACGCAAGGCTAG 59.833 55.000 0.00 0.00 46.39 3.42
224 225 1.565156 CGCAAGACAACGCAAGGCTA 61.565 55.000 0.00 0.00 41.84 3.93
225 226 2.896801 CGCAAGACAACGCAAGGCT 61.897 57.895 0.00 0.00 41.84 4.58
226 227 2.427410 CGCAAGACAACGCAAGGC 60.427 61.111 0.00 0.00 41.84 4.35
227 228 3.329231 TCGCAAGACAACGCAAGG 58.671 55.556 0.00 0.00 45.01 3.61
238 239 1.470098 CCTCCCAACAAGATTCGCAAG 59.530 52.381 0.00 0.00 0.00 4.01
239 240 1.073125 TCCTCCCAACAAGATTCGCAA 59.927 47.619 0.00 0.00 0.00 4.85
240 241 0.690192 TCCTCCCAACAAGATTCGCA 59.310 50.000 0.00 0.00 0.00 5.10
241 242 1.672881 CATCCTCCCAACAAGATTCGC 59.327 52.381 0.00 0.00 0.00 4.70
242 243 2.292267 CCATCCTCCCAACAAGATTCG 58.708 52.381 0.00 0.00 0.00 3.34
243 244 2.027385 GCCATCCTCCCAACAAGATTC 58.973 52.381 0.00 0.00 0.00 2.52
244 245 1.358787 TGCCATCCTCCCAACAAGATT 59.641 47.619 0.00 0.00 0.00 2.40
245 246 1.002069 TGCCATCCTCCCAACAAGAT 58.998 50.000 0.00 0.00 0.00 2.40
246 247 0.329261 CTGCCATCCTCCCAACAAGA 59.671 55.000 0.00 0.00 0.00 3.02
247 248 0.329261 TCTGCCATCCTCCCAACAAG 59.671 55.000 0.00 0.00 0.00 3.16
248 249 0.329261 CTCTGCCATCCTCCCAACAA 59.671 55.000 0.00 0.00 0.00 2.83
249 250 0.842030 ACTCTGCCATCCTCCCAACA 60.842 55.000 0.00 0.00 0.00 3.33
250 251 1.139853 CTACTCTGCCATCCTCCCAAC 59.860 57.143 0.00 0.00 0.00 3.77
251 252 1.008327 TCTACTCTGCCATCCTCCCAA 59.992 52.381 0.00 0.00 0.00 4.12
252 253 0.636647 TCTACTCTGCCATCCTCCCA 59.363 55.000 0.00 0.00 0.00 4.37
253 254 1.794714 TTCTACTCTGCCATCCTCCC 58.205 55.000 0.00 0.00 0.00 4.30
254 255 3.006752 CAGATTCTACTCTGCCATCCTCC 59.993 52.174 0.00 0.00 36.53 4.30
255 256 3.640967 ACAGATTCTACTCTGCCATCCTC 59.359 47.826 1.14 0.00 45.37 3.71
256 257 3.652055 ACAGATTCTACTCTGCCATCCT 58.348 45.455 1.14 0.00 45.37 3.24
257 258 4.830046 TCTACAGATTCTACTCTGCCATCC 59.170 45.833 1.14 0.00 45.37 3.51
258 259 5.767665 TCTCTACAGATTCTACTCTGCCATC 59.232 44.000 1.14 0.00 45.37 3.51
259 260 5.700183 TCTCTACAGATTCTACTCTGCCAT 58.300 41.667 1.14 0.00 45.37 4.40
260 261 5.117406 TCTCTACAGATTCTACTCTGCCA 57.883 43.478 1.14 0.00 45.37 4.92
261 262 5.221165 GGTTCTCTACAGATTCTACTCTGCC 60.221 48.000 1.14 0.00 45.37 4.85
262 263 5.592688 AGGTTCTCTACAGATTCTACTCTGC 59.407 44.000 1.14 0.00 45.37 4.26
263 264 6.262273 GGAGGTTCTCTACAGATTCTACTCTG 59.738 46.154 0.00 0.00 46.59 3.35
264 265 6.362248 GGAGGTTCTCTACAGATTCTACTCT 58.638 44.000 0.00 0.00 0.00 3.24
265 266 5.237779 CGGAGGTTCTCTACAGATTCTACTC 59.762 48.000 0.00 0.00 0.00 2.59
266 267 5.127491 CGGAGGTTCTCTACAGATTCTACT 58.873 45.833 0.00 0.00 0.00 2.57
267 268 4.883006 ACGGAGGTTCTCTACAGATTCTAC 59.117 45.833 0.00 0.00 0.00 2.59
268 269 5.113446 ACGGAGGTTCTCTACAGATTCTA 57.887 43.478 0.00 0.00 0.00 2.10
269 270 3.970842 ACGGAGGTTCTCTACAGATTCT 58.029 45.455 0.00 0.00 0.00 2.40
270 271 4.722361 AACGGAGGTTCTCTACAGATTC 57.278 45.455 0.00 0.00 0.00 2.52
271 272 4.527038 TGAAACGGAGGTTCTCTACAGATT 59.473 41.667 0.00 0.00 34.62 2.40
272 273 4.087182 TGAAACGGAGGTTCTCTACAGAT 58.913 43.478 0.00 0.00 34.62 2.90
273 274 3.493334 TGAAACGGAGGTTCTCTACAGA 58.507 45.455 0.00 0.00 34.62 3.41
274 275 3.256136 ACTGAAACGGAGGTTCTCTACAG 59.744 47.826 0.00 0.00 34.62 2.74
275 276 3.228453 ACTGAAACGGAGGTTCTCTACA 58.772 45.455 0.00 0.00 34.62 2.74
276 277 3.938289 ACTGAAACGGAGGTTCTCTAC 57.062 47.619 0.00 0.00 34.62 2.59
277 278 4.150359 AGAACTGAAACGGAGGTTCTCTA 58.850 43.478 0.00 0.00 42.92 2.43
278 279 2.966516 AGAACTGAAACGGAGGTTCTCT 59.033 45.455 0.00 0.00 42.92 3.10
279 280 3.388345 AGAACTGAAACGGAGGTTCTC 57.612 47.619 0.00 0.00 42.92 2.87
281 282 2.059541 CGAGAACTGAAACGGAGGTTC 58.940 52.381 0.00 0.00 38.51 3.62
282 283 1.270147 CCGAGAACTGAAACGGAGGTT 60.270 52.381 0.00 0.00 46.94 3.50
283 284 0.317479 CCGAGAACTGAAACGGAGGT 59.683 55.000 0.00 0.00 46.94 3.85
284 285 3.123674 CCGAGAACTGAAACGGAGG 57.876 57.895 0.00 0.00 46.94 4.30
287 288 1.000506 TCCTTCCGAGAACTGAAACGG 59.999 52.381 0.00 0.00 45.61 4.44
288 289 2.059541 GTCCTTCCGAGAACTGAAACG 58.940 52.381 0.00 0.00 0.00 3.60
289 290 2.224209 TGGTCCTTCCGAGAACTGAAAC 60.224 50.000 0.00 0.00 39.52 2.78
290 291 2.043992 TGGTCCTTCCGAGAACTGAAA 58.956 47.619 0.00 0.00 39.52 2.69
291 292 1.343465 GTGGTCCTTCCGAGAACTGAA 59.657 52.381 0.00 0.00 39.52 3.02
292 293 0.966920 GTGGTCCTTCCGAGAACTGA 59.033 55.000 0.00 0.00 39.52 3.41
293 294 0.037232 GGTGGTCCTTCCGAGAACTG 60.037 60.000 0.00 0.00 39.52 3.16
294 295 0.471211 TGGTGGTCCTTCCGAGAACT 60.471 55.000 0.00 0.00 39.52 3.01
295 296 0.613777 ATGGTGGTCCTTCCGAGAAC 59.386 55.000 0.00 0.00 39.52 3.01
296 297 0.613260 CATGGTGGTCCTTCCGAGAA 59.387 55.000 0.00 0.00 39.52 2.87
297 298 1.264749 CCATGGTGGTCCTTCCGAGA 61.265 60.000 2.57 0.00 39.52 4.04
298 299 1.221840 CCATGGTGGTCCTTCCGAG 59.778 63.158 2.57 0.00 39.52 4.63
299 300 3.399046 CCATGGTGGTCCTTCCGA 58.601 61.111 2.57 0.00 39.52 4.55
307 308 9.131791 GAAATATAAGTTTCATACCATGGTGGT 57.868 33.333 28.17 13.15 43.74 4.16
308 309 8.576442 GGAAATATAAGTTTCATACCATGGTGG 58.424 37.037 28.17 18.78 40.30 4.61
309 310 8.576442 GGGAAATATAAGTTTCATACCATGGTG 58.424 37.037 28.17 12.02 39.33 4.17
310 311 8.285891 TGGGAAATATAAGTTTCATACCATGGT 58.714 33.333 23.55 23.55 39.33 3.55
311 312 8.704849 TGGGAAATATAAGTTTCATACCATGG 57.295 34.615 11.19 11.19 39.33 3.66
312 313 9.354673 ACTGGGAAATATAAGTTTCATACCATG 57.645 33.333 2.18 0.00 39.33 3.66
975 998 2.103094 CGAGAGGATAATCCAACCTGCA 59.897 50.000 0.00 0.00 39.61 4.41
1253 1277 2.250031 AGCTCATGCCAAAACAATCCA 58.750 42.857 0.00 0.00 40.80 3.41
1355 1379 1.550524 CAAACGGTGAGATCTCAGGGA 59.449 52.381 25.76 0.43 40.75 4.20
1430 1454 5.163713 GGAGCTGAATAAATCTGTTGTGGAC 60.164 44.000 0.00 0.00 0.00 4.02
1599 1638 0.033228 GATCATCCTCGGCACTCCAG 59.967 60.000 0.00 0.00 0.00 3.86
1898 1937 7.042950 AGATGATGAGTCTTCAACTTGATCAG 58.957 38.462 12.28 0.00 39.04 2.90
2006 2048 4.380843 TTGGGTAAACCTGACACATCAT 57.619 40.909 0.00 0.00 41.11 2.45
2143 2185 8.978874 TCATTAATGTGAGTAATGCCACTAAT 57.021 30.769 14.97 0.00 38.36 1.73
2640 2692 1.608025 GGTCATGAAACAGCTCACCGA 60.608 52.381 0.00 0.00 0.00 4.69
2947 3006 5.451242 GGGAACACACTTAGCACAAATTCAA 60.451 40.000 0.00 0.00 0.00 2.69
3317 3390 0.834612 GGAACATACCACCGATCCCA 59.165 55.000 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.