Multiple sequence alignment - TraesCS4B01G129400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G129400 chr4B 100.000 2647 0 0 1 2647 169596534 169599180 0.000000e+00 4889.0
1 TraesCS4B01G129400 chr4B 90.793 706 48 14 1037 1737 169792532 169793225 0.000000e+00 928.0
2 TraesCS4B01G129400 chr4D 91.678 2271 119 24 1 2239 107436326 107434094 0.000000e+00 3083.0
3 TraesCS4B01G129400 chr4D 89.744 702 57 12 1040 1737 106739280 106738590 0.000000e+00 883.0
4 TraesCS4B01G129400 chr4D 96.522 115 3 1 2338 2451 107433916 107433802 3.480000e-44 189.0
5 TraesCS4B01G129400 chr4D 95.312 64 2 1 2274 2336 107434023 107433960 1.680000e-17 100.0
6 TraesCS4B01G129400 chr4A 93.255 1868 80 26 423 2274 468756904 468758741 0.000000e+00 2710.0
7 TraesCS4B01G129400 chr4A 89.413 699 56 15 1037 1730 469101937 469102622 0.000000e+00 865.0
8 TraesCS4B01G129400 chr4A 84.062 389 43 8 1 370 468756513 468756901 9.010000e-95 357.0
9 TraesCS4B01G129400 chr4A 96.396 111 4 0 2338 2448 468758921 468759031 1.620000e-42 183.0
10 TraesCS4B01G129400 chr5B 88.963 299 33 0 1234 1532 704276900 704276602 1.160000e-98 370.0
11 TraesCS4B01G129400 chr5B 80.556 324 40 12 1113 1435 704272904 704272603 7.370000e-56 228.0
12 TraesCS4B01G129400 chr2D 88.542 96 9 2 1688 1782 381201042 381200948 5.990000e-22 115.0
13 TraesCS4B01G129400 chr2D 96.610 59 2 0 1688 1746 381301387 381301445 6.030000e-17 99.0
14 TraesCS4B01G129400 chr2B 95.238 63 3 0 1688 1750 795271347 795271285 1.680000e-17 100.0
15 TraesCS4B01G129400 chr2A 93.651 63 4 0 1688 1750 762156486 762156548 7.800000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G129400 chr4B 169596534 169599180 2646 False 4889.000000 4889 100.000000 1 2647 1 chr4B.!!$F1 2646
1 TraesCS4B01G129400 chr4B 169792532 169793225 693 False 928.000000 928 90.793000 1037 1737 1 chr4B.!!$F2 700
2 TraesCS4B01G129400 chr4D 107433802 107436326 2524 True 1124.000000 3083 94.504000 1 2451 3 chr4D.!!$R2 2450
3 TraesCS4B01G129400 chr4D 106738590 106739280 690 True 883.000000 883 89.744000 1040 1737 1 chr4D.!!$R1 697
4 TraesCS4B01G129400 chr4A 468756513 468759031 2518 False 1083.333333 2710 91.237667 1 2448 3 chr4A.!!$F2 2447
5 TraesCS4B01G129400 chr4A 469101937 469102622 685 False 865.000000 865 89.413000 1037 1730 1 chr4A.!!$F1 693
6 TraesCS4B01G129400 chr5B 704272603 704276900 4297 True 299.000000 370 84.759500 1113 1532 2 chr5B.!!$R1 419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 67 2.171448 AGAGAAAGATTACAGCGCCCAT 59.829 45.455 2.29 0.0 0.0 4.0 F
1034 1068 1.133294 CCACCCAAAACCCTAACCTGT 60.133 52.381 0.00 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1469 1507 0.462375 GACCGCCAAACTTTTTGGGT 59.538 50.0 17.36 8.98 39.90 4.51 R
2268 2394 0.032403 TCCATATAAACGGCCGGACG 59.968 55.0 32.33 32.33 40.31 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 64 2.893637 TCAGAGAAAGATTACAGCGCC 58.106 47.619 2.29 0.00 0.00 6.53
63 67 2.171448 AGAGAAAGATTACAGCGCCCAT 59.829 45.455 2.29 0.00 0.00 4.00
217 237 8.842358 AATTCTGTGAAATTTCAGCAAATCAT 57.158 26.923 21.05 5.00 37.98 2.45
226 246 9.706691 GAAATTTCAGCAAATCATCATCCATAT 57.293 29.630 13.40 0.00 30.37 1.78
298 320 3.865745 AGAGATTAAACACGAATCCGCAG 59.134 43.478 0.00 0.00 39.95 5.18
349 371 4.610945 CACTTCCGCATGAAAAATATCCC 58.389 43.478 0.00 0.00 31.06 3.85
424 449 3.682696 GGTTAGAACCCAAGAAACGGAT 58.317 45.455 0.00 0.00 43.43 4.18
548 575 5.989551 ATGGAGATTGTTTTGTTTGTTGC 57.010 34.783 0.00 0.00 0.00 4.17
675 702 4.351054 CACCTTCCCGCAAGCCCT 62.351 66.667 0.00 0.00 0.00 5.19
723 750 4.019983 GGAGAGAAGACTCCGGCA 57.980 61.111 0.00 0.00 45.30 5.69
727 754 2.284258 AGAAGACTCCGGCAGCCT 60.284 61.111 10.54 0.00 0.00 4.58
885 918 2.479560 GCCCGCATAAAGTCCAATTGAC 60.480 50.000 7.12 3.53 44.82 3.18
1034 1068 1.133294 CCACCCAAAACCCTAACCTGT 60.133 52.381 0.00 0.00 0.00 4.00
1825 1876 9.512588 AGAATCTGTGAATGAAATGTTTCTAGT 57.487 29.630 6.99 0.00 38.02 2.57
1829 1880 9.778741 TCTGTGAATGAAATGTTTCTAGTAAGT 57.221 29.630 6.99 0.00 38.02 2.24
1860 1914 7.307396 CCCATCATTTCTAGTAAGTATTGCACG 60.307 40.741 0.00 0.00 30.97 5.34
1869 1923 8.653338 TCTAGTAAGTATTGCACGAAATGTTTC 58.347 33.333 0.00 0.00 30.97 2.78
1870 1924 7.435068 AGTAAGTATTGCACGAAATGTTTCT 57.565 32.000 4.20 0.00 31.94 2.52
1889 1944 4.163441 TCTCATGTTGGAGGTGAACAAA 57.837 40.909 0.00 0.00 36.90 2.83
1890 1945 4.531854 TCTCATGTTGGAGGTGAACAAAA 58.468 39.130 0.00 0.00 36.90 2.44
1891 1946 4.338118 TCTCATGTTGGAGGTGAACAAAAC 59.662 41.667 0.00 0.00 36.90 2.43
1892 1947 4.019858 TCATGTTGGAGGTGAACAAAACA 58.980 39.130 0.00 0.00 36.90 2.83
1893 1948 4.648762 TCATGTTGGAGGTGAACAAAACAT 59.351 37.500 0.00 0.00 38.43 2.71
1894 1949 4.383850 TGTTGGAGGTGAACAAAACATG 57.616 40.909 0.00 0.00 30.35 3.21
1895 1950 3.123050 GTTGGAGGTGAACAAAACATGC 58.877 45.455 0.00 0.00 0.00 4.06
1896 1951 2.382882 TGGAGGTGAACAAAACATGCA 58.617 42.857 0.00 0.00 0.00 3.96
1897 1952 2.964464 TGGAGGTGAACAAAACATGCAT 59.036 40.909 0.00 0.00 0.00 3.96
1898 1953 3.243805 TGGAGGTGAACAAAACATGCATG 60.244 43.478 25.09 25.09 0.00 4.06
1899 1954 3.319755 GAGGTGAACAAAACATGCATGG 58.680 45.455 29.41 14.61 0.00 3.66
1900 1955 1.799994 GGTGAACAAAACATGCATGGC 59.200 47.619 29.41 10.53 0.00 4.40
1901 1956 1.799994 GTGAACAAAACATGCATGGCC 59.200 47.619 29.41 10.93 0.00 5.36
1902 1957 1.693062 TGAACAAAACATGCATGGCCT 59.307 42.857 29.41 11.64 0.00 5.19
1903 1958 2.288948 TGAACAAAACATGCATGGCCTC 60.289 45.455 29.41 16.35 0.00 4.70
1918 2034 0.391130 GCCTCACGCCTGATGTTGTA 60.391 55.000 0.00 0.00 0.00 2.41
1921 2037 3.792401 CCTCACGCCTGATGTTGTAATA 58.208 45.455 0.00 0.00 0.00 0.98
2046 2171 7.438757 GCTATCAGCCTATCATCATTGATACTG 59.561 40.741 0.00 7.03 38.85 2.74
2070 2195 8.352137 TGATGTTGTGAATTTATCCTGTGATT 57.648 30.769 0.00 0.00 32.18 2.57
2073 2198 6.152661 TGTTGTGAATTTATCCTGTGATTCCC 59.847 38.462 0.00 0.00 32.18 3.97
2151 2277 7.690301 GCATTTCTATCTGGGTTAGATTGAGGA 60.690 40.741 0.00 0.00 43.68 3.71
2175 2301 1.464734 CACTTGCTCGGGTCTCTCTA 58.535 55.000 0.00 0.00 0.00 2.43
2247 2373 0.998928 ATACCCCAGTGGCATGTTCA 59.001 50.000 2.61 0.00 37.83 3.18
2250 2376 0.612732 CCCCAGTGGCATGTTCATGT 60.613 55.000 2.61 0.00 0.00 3.21
2263 2389 7.921745 TGGCATGTTCATGTCATTATTTATGTG 59.078 33.333 14.80 0.00 35.64 3.21
2266 2392 8.964150 CATGTTCATGTCATTATTTATGTGCTG 58.036 33.333 4.80 0.00 35.64 4.41
2268 2394 6.075762 TCATGTCATTATTTATGTGCTGCC 57.924 37.500 0.00 0.00 35.64 4.85
2323 3855 4.685628 GTGTTTGATGTTACATTGGGCTTG 59.314 41.667 0.00 0.00 0.00 4.01
2336 3868 5.308237 ACATTGGGCTTGTAATTTTGGGTAA 59.692 36.000 0.00 0.00 0.00 2.85
2387 3962 0.107066 TACATGGCTGCATGTCCAGG 60.107 55.000 16.95 11.33 43.89 4.45
2388 3963 2.125326 CATGGCTGCATGTCCAGGG 61.125 63.158 0.50 1.01 35.57 4.45
2451 4250 2.335712 GCCTGGAACTTTGCCCTCG 61.336 63.158 0.00 0.00 0.00 4.63
2453 4252 1.237285 CCTGGAACTTTGCCCTCGTG 61.237 60.000 0.00 0.00 0.00 4.35
2461 5080 2.410322 TTTGCCCTCGTGTGGAGCAT 62.410 55.000 5.41 0.00 41.71 3.79
2464 5083 1.961180 GCCCTCGTGTGGAGCATACT 61.961 60.000 0.00 0.00 41.71 2.12
2465 5084 1.399714 CCCTCGTGTGGAGCATACTA 58.600 55.000 0.00 0.00 41.71 1.82
2467 5086 1.749063 CCTCGTGTGGAGCATACTACA 59.251 52.381 0.00 0.00 41.71 2.74
2471 5090 5.279006 CCTCGTGTGGAGCATACTACATATT 60.279 44.000 0.00 0.00 39.56 1.28
2475 5094 5.466728 GTGTGGAGCATACTACATATTGGTG 59.533 44.000 0.00 0.00 39.56 4.17
2476 5095 4.997395 GTGGAGCATACTACATATTGGTGG 59.003 45.833 0.00 0.00 39.56 4.61
2477 5096 4.904853 TGGAGCATACTACATATTGGTGGA 59.095 41.667 0.00 0.00 29.04 4.02
2478 5097 5.221641 TGGAGCATACTACATATTGGTGGAC 60.222 44.000 0.00 0.00 29.04 4.02
2479 5098 5.221641 GGAGCATACTACATATTGGTGGACA 60.222 44.000 0.00 0.00 0.00 4.02
2481 5100 6.233434 AGCATACTACATATTGGTGGACATG 58.767 40.000 0.00 0.00 0.00 3.21
2482 5101 5.106555 GCATACTACATATTGGTGGACATGC 60.107 44.000 0.00 0.00 35.76 4.06
2483 5102 3.820557 ACTACATATTGGTGGACATGCC 58.179 45.455 0.00 0.00 37.10 4.40
2484 5103 2.824689 ACATATTGGTGGACATGCCA 57.175 45.000 4.93 4.93 46.96 4.92
2494 5113 1.272203 TGGACATGCCATTTTACGGGT 60.272 47.619 4.93 0.00 43.33 5.28
2495 5114 1.404035 GGACATGCCATTTTACGGGTC 59.596 52.381 0.00 0.00 36.34 4.46
2496 5115 1.404035 GACATGCCATTTTACGGGTCC 59.596 52.381 0.00 0.00 0.00 4.46
2498 5117 1.676006 CATGCCATTTTACGGGTCCTC 59.324 52.381 0.00 0.00 0.00 3.71
2499 5118 0.693622 TGCCATTTTACGGGTCCTCA 59.306 50.000 0.00 0.00 0.00 3.86
2500 5119 1.074084 TGCCATTTTACGGGTCCTCAA 59.926 47.619 0.00 0.00 0.00 3.02
2501 5120 2.164338 GCCATTTTACGGGTCCTCAAA 58.836 47.619 0.00 0.00 0.00 2.69
2502 5121 2.559231 GCCATTTTACGGGTCCTCAAAA 59.441 45.455 0.00 0.00 0.00 2.44
2504 5123 4.676986 GCCATTTTACGGGTCCTCAAAATC 60.677 45.833 5.95 0.00 30.27 2.17
2505 5124 4.461081 CCATTTTACGGGTCCTCAAAATCA 59.539 41.667 5.95 0.00 30.27 2.57
2507 5126 6.451393 CATTTTACGGGTCCTCAAAATCAAA 58.549 36.000 5.95 0.00 30.27 2.69
2508 5127 6.466885 TTTTACGGGTCCTCAAAATCAAAA 57.533 33.333 0.00 0.00 0.00 2.44
2509 5128 6.658188 TTTACGGGTCCTCAAAATCAAAAT 57.342 33.333 0.00 0.00 0.00 1.82
2511 5130 5.134202 ACGGGTCCTCAAAATCAAAATTC 57.866 39.130 0.00 0.00 0.00 2.17
2513 5132 5.069781 ACGGGTCCTCAAAATCAAAATTCAA 59.930 36.000 0.00 0.00 0.00 2.69
2514 5133 6.165577 CGGGTCCTCAAAATCAAAATTCAAT 58.834 36.000 0.00 0.00 0.00 2.57
2517 5136 7.094677 GGGTCCTCAAAATCAAAATTCAATTGG 60.095 37.037 5.42 0.00 0.00 3.16
2520 5139 8.431222 TCCTCAAAATCAAAATTCAATTGGTCT 58.569 29.630 5.42 0.00 0.00 3.85
2521 5140 8.715088 CCTCAAAATCAAAATTCAATTGGTCTC 58.285 33.333 5.42 0.00 0.00 3.36
2522 5141 9.485206 CTCAAAATCAAAATTCAATTGGTCTCT 57.515 29.630 5.42 0.00 0.00 3.10
2525 5144 7.543359 AATCAAAATTCAATTGGTCTCTGGA 57.457 32.000 5.42 0.00 0.00 3.86
2526 5145 7.729124 ATCAAAATTCAATTGGTCTCTGGAT 57.271 32.000 5.42 0.00 0.00 3.41
2528 5147 6.720748 TCAAAATTCAATTGGTCTCTGGATCA 59.279 34.615 5.42 0.00 0.00 2.92
2529 5148 7.398047 TCAAAATTCAATTGGTCTCTGGATCAT 59.602 33.333 5.42 0.00 32.05 2.45
2530 5149 6.956202 AATTCAATTGGTCTCTGGATCATC 57.044 37.500 5.42 0.00 32.05 2.92
2532 5151 5.641789 TCAATTGGTCTCTGGATCATCAT 57.358 39.130 5.42 0.00 32.05 2.45
2534 5153 3.851458 TTGGTCTCTGGATCATCATGG 57.149 47.619 0.00 0.00 32.05 3.66
2535 5154 3.050523 TGGTCTCTGGATCATCATGGA 57.949 47.619 0.00 0.00 0.00 3.41
2536 5155 3.387012 TGGTCTCTGGATCATCATGGAA 58.613 45.455 0.00 0.00 0.00 3.53
2537 5156 3.135348 TGGTCTCTGGATCATCATGGAAC 59.865 47.826 0.00 0.00 0.00 3.62
2538 5157 3.495806 GGTCTCTGGATCATCATGGAACC 60.496 52.174 0.00 0.00 0.00 3.62
2539 5158 2.707791 TCTCTGGATCATCATGGAACCC 59.292 50.000 0.00 0.00 0.00 4.11
2540 5159 2.709934 CTCTGGATCATCATGGAACCCT 59.290 50.000 0.00 0.00 0.00 4.34
2541 5160 2.440627 TCTGGATCATCATGGAACCCTG 59.559 50.000 0.00 0.00 0.00 4.45
2542 5161 1.496001 TGGATCATCATGGAACCCTGG 59.504 52.381 0.00 0.00 0.00 4.45
2543 5162 1.776667 GGATCATCATGGAACCCTGGA 59.223 52.381 0.00 0.00 0.00 3.86
2544 5163 2.377869 GGATCATCATGGAACCCTGGAT 59.622 50.000 0.00 0.00 0.00 3.41
2545 5164 3.560882 GGATCATCATGGAACCCTGGATC 60.561 52.174 0.00 0.00 0.00 3.36
2547 5166 3.058341 TCATCATGGAACCCTGGATCAT 58.942 45.455 0.00 0.00 0.00 2.45
2548 5167 3.073503 TCATCATGGAACCCTGGATCATC 59.926 47.826 0.00 0.00 0.00 2.92
2549 5168 2.490961 TCATGGAACCCTGGATCATCA 58.509 47.619 0.00 0.00 0.00 3.07
2550 5169 3.058341 TCATGGAACCCTGGATCATCAT 58.942 45.455 0.00 0.00 0.00 2.45
2551 5170 3.073503 TCATGGAACCCTGGATCATCATC 59.926 47.826 0.00 0.00 0.00 2.92
2552 5171 2.490961 TGGAACCCTGGATCATCATCA 58.509 47.619 0.00 0.00 0.00 3.07
2553 5172 2.173356 TGGAACCCTGGATCATCATCAC 59.827 50.000 0.00 0.00 0.00 3.06
2554 5173 2.487934 GAACCCTGGATCATCATCACG 58.512 52.381 0.00 0.00 0.00 4.35
2555 5174 0.761187 ACCCTGGATCATCATCACGG 59.239 55.000 0.00 0.00 0.00 4.94
2557 5176 1.051008 CCTGGATCATCATCACGGGA 58.949 55.000 0.00 0.00 31.75 5.14
2559 5178 2.039480 CCTGGATCATCATCACGGGAAT 59.961 50.000 0.00 0.00 31.75 3.01
2560 5179 3.072211 CTGGATCATCATCACGGGAATG 58.928 50.000 0.00 0.00 0.00 2.67
2561 5180 2.224597 TGGATCATCATCACGGGAATGG 60.225 50.000 0.00 0.00 0.00 3.16
2562 5181 1.808945 GATCATCATCACGGGAATGGC 59.191 52.381 0.00 0.00 0.00 4.40
2563 5182 0.545646 TCATCATCACGGGAATGGCA 59.454 50.000 0.00 0.00 0.00 4.92
2565 5184 0.548031 ATCATCACGGGAATGGCACT 59.452 50.000 0.00 0.00 0.00 4.40
2567 5186 0.734889 CATCACGGGAATGGCACTTC 59.265 55.000 0.00 0.00 0.00 3.01
2569 5188 2.046314 ACGGGAATGGCACTTCGG 60.046 61.111 0.00 0.00 0.00 4.30
2571 5190 1.674322 CGGGAATGGCACTTCGGTT 60.674 57.895 0.00 0.00 0.00 4.44
2573 5192 0.893727 GGGAATGGCACTTCGGTTGT 60.894 55.000 0.00 0.00 0.00 3.32
2577 5196 0.606401 ATGGCACTTCGGTTGTGGAG 60.606 55.000 0.00 0.00 36.08 3.86
2579 5198 0.951040 GGCACTTCGGTTGTGGAGAG 60.951 60.000 0.00 0.00 36.08 3.20
2583 5202 2.804828 CTTCGGTTGTGGAGAGGGGC 62.805 65.000 0.00 0.00 0.00 5.80
2586 5205 2.360475 GTTGTGGAGAGGGGCAGC 60.360 66.667 0.00 0.00 0.00 5.25
2587 5206 3.650950 TTGTGGAGAGGGGCAGCC 61.651 66.667 1.26 1.26 0.00 4.85
2588 5207 4.664267 TGTGGAGAGGGGCAGCCT 62.664 66.667 12.43 0.00 0.00 4.58
2589 5208 2.365635 GTGGAGAGGGGCAGCCTA 60.366 66.667 12.43 0.00 0.00 3.93
2590 5209 2.365635 TGGAGAGGGGCAGCCTAC 60.366 66.667 12.43 4.86 0.00 3.18
2591 5210 3.541713 GGAGAGGGGCAGCCTACG 61.542 72.222 12.43 0.00 0.00 3.51
2592 5211 3.541713 GAGAGGGGCAGCCTACGG 61.542 72.222 12.43 0.00 0.00 4.02
2593 5212 4.400251 AGAGGGGCAGCCTACGGT 62.400 66.667 12.43 0.00 0.00 4.83
2594 5213 3.851128 GAGGGGCAGCCTACGGTC 61.851 72.222 12.43 0.00 0.00 4.79
2596 5215 3.400054 GGGGCAGCCTACGGTCTT 61.400 66.667 12.43 0.00 0.00 3.01
2597 5216 2.125106 GGGCAGCCTACGGTCTTG 60.125 66.667 12.43 0.00 0.00 3.02
2598 5217 2.656069 GGGCAGCCTACGGTCTTGA 61.656 63.158 12.43 0.00 0.00 3.02
2600 5219 1.448013 GCAGCCTACGGTCTTGACC 60.448 63.158 9.62 9.62 0.00 4.02
2601 5220 1.218316 CAGCCTACGGTCTTGACCC 59.782 63.158 13.53 0.24 0.00 4.46
2603 5222 1.218316 GCCTACGGTCTTGACCCAG 59.782 63.158 13.53 10.61 0.00 4.45
2604 5223 1.218316 CCTACGGTCTTGACCCAGC 59.782 63.158 13.53 0.00 0.00 4.85
2605 5224 1.153823 CTACGGTCTTGACCCAGCG 60.154 63.158 13.53 5.15 39.40 5.18
2606 5225 3.291101 TACGGTCTTGACCCAGCGC 62.291 63.158 13.53 0.00 37.00 5.92
2609 5228 2.435059 GTCTTGACCCAGCGCCTC 60.435 66.667 2.29 0.00 0.00 4.70
2610 5229 3.706373 TCTTGACCCAGCGCCTCC 61.706 66.667 2.29 0.00 0.00 4.30
2611 5230 4.020617 CTTGACCCAGCGCCTCCA 62.021 66.667 2.29 0.00 0.00 3.86
2613 5232 2.826777 CTTGACCCAGCGCCTCCAAT 62.827 60.000 2.29 0.00 0.00 3.16
2614 5233 2.044946 GACCCAGCGCCTCCAATT 60.045 61.111 2.29 0.00 0.00 2.32
2615 5234 2.044946 ACCCAGCGCCTCCAATTC 60.045 61.111 2.29 0.00 0.00 2.17
2616 5235 2.273449 CCCAGCGCCTCCAATTCT 59.727 61.111 2.29 0.00 0.00 2.40
2617 5236 2.117156 CCCAGCGCCTCCAATTCTG 61.117 63.158 2.29 0.00 0.00 3.02
2618 5237 1.377725 CCAGCGCCTCCAATTCTGT 60.378 57.895 2.29 0.00 0.00 3.41
2619 5238 0.962356 CCAGCGCCTCCAATTCTGTT 60.962 55.000 2.29 0.00 0.00 3.16
2620 5239 1.678728 CCAGCGCCTCCAATTCTGTTA 60.679 52.381 2.29 0.00 0.00 2.41
2622 5241 1.017387 GCGCCTCCAATTCTGTTAGG 58.983 55.000 0.00 0.00 0.00 2.69
2623 5242 1.017387 CGCCTCCAATTCTGTTAGGC 58.983 55.000 0.00 0.00 42.45 3.93
2624 5243 1.393603 GCCTCCAATTCTGTTAGGCC 58.606 55.000 0.00 0.00 41.09 5.19
2625 5244 1.064389 GCCTCCAATTCTGTTAGGCCT 60.064 52.381 11.78 11.78 41.09 5.19
2626 5245 2.621668 GCCTCCAATTCTGTTAGGCCTT 60.622 50.000 12.58 0.00 41.09 4.35
2627 5246 3.019564 CCTCCAATTCTGTTAGGCCTTG 58.980 50.000 12.58 0.00 0.00 3.61
2628 5247 3.562176 CCTCCAATTCTGTTAGGCCTTGT 60.562 47.826 12.58 0.00 0.00 3.16
2630 5249 4.079253 TCCAATTCTGTTAGGCCTTGTTC 58.921 43.478 12.58 0.00 0.00 3.18
2631 5250 3.119849 CCAATTCTGTTAGGCCTTGTTCG 60.120 47.826 12.58 0.00 0.00 3.95
2633 5252 1.053424 TCTGTTAGGCCTTGTTCGGT 58.947 50.000 12.58 0.00 0.00 4.69
2635 5254 2.633967 TCTGTTAGGCCTTGTTCGGTTA 59.366 45.455 12.58 0.00 0.00 2.85
2636 5255 3.000727 CTGTTAGGCCTTGTTCGGTTAG 58.999 50.000 12.58 0.00 0.00 2.34
2637 5256 1.736126 GTTAGGCCTTGTTCGGTTAGC 59.264 52.381 12.58 0.00 0.00 3.09
2638 5257 0.251073 TAGGCCTTGTTCGGTTAGCC 59.749 55.000 12.58 0.00 40.79 3.93
2639 5258 2.044555 GGCCTTGTTCGGTTAGCCC 61.045 63.158 0.00 0.00 34.23 5.19
2640 5259 2.044555 GCCTTGTTCGGTTAGCCCC 61.045 63.158 0.00 0.00 0.00 5.80
2642 5261 0.392595 CCTTGTTCGGTTAGCCCCTC 60.393 60.000 0.00 0.00 0.00 4.30
2643 5262 0.613777 CTTGTTCGGTTAGCCCCTCT 59.386 55.000 0.00 0.00 0.00 3.69
2644 5263 0.611714 TTGTTCGGTTAGCCCCTCTC 59.388 55.000 0.00 0.00 0.00 3.20
2645 5264 1.262640 TGTTCGGTTAGCCCCTCTCC 61.263 60.000 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 64 7.569240 AGGTGTCTAATTTCTTTAGGAGATGG 58.431 38.462 0.00 0.00 38.29 3.51
111 115 1.541233 CGAATACATGACCTGGAGGCC 60.541 57.143 0.00 0.00 39.32 5.19
113 117 2.695666 AGACGAATACATGACCTGGAGG 59.304 50.000 0.00 0.00 42.17 4.30
157 162 0.532573 ATTGCTCTCTTCGAAGCGGA 59.467 50.000 20.56 17.78 0.00 5.54
504 531 7.233348 TCCATTACTTTCTTGCTTTCTTGGAAT 59.767 33.333 0.00 0.00 0.00 3.01
624 651 1.446099 GTTGAGAGACGCGGCATCA 60.446 57.895 17.71 16.15 0.00 3.07
739 766 0.533531 TCTTATCCGAGCGAGCCGTA 60.534 55.000 0.00 0.00 0.00 4.02
796 823 2.921853 TAAGAGGGCGCGATGGGAGA 62.922 60.000 12.10 0.00 0.00 3.71
844 877 1.340114 CCTCCAAGTACTGGGCTTTCC 60.340 57.143 11.96 0.00 46.44 3.13
868 901 3.445096 AGCTGGTCAATTGGACTTTATGC 59.555 43.478 5.42 0.62 46.16 3.14
885 918 2.203209 GGTAATGGGCCGAGCTGG 60.203 66.667 0.00 0.00 42.50 4.85
1469 1507 0.462375 GACCGCCAAACTTTTTGGGT 59.538 50.000 17.36 8.98 39.90 4.51
1475 1513 3.656045 CCGCGACCGCCAAACTTT 61.656 61.111 8.23 0.00 37.98 2.66
1499 1537 2.022129 CGACTTCTGGAAACGCGCT 61.022 57.895 5.73 0.00 0.00 5.92
1814 1865 8.052748 TGATGGGCAATACTTACTAGAAACATT 58.947 33.333 0.00 0.00 0.00 2.71
1818 1869 9.120538 GAAATGATGGGCAATACTTACTAGAAA 57.879 33.333 0.00 0.00 0.00 2.52
1820 1871 8.034313 AGAAATGATGGGCAATACTTACTAGA 57.966 34.615 0.00 0.00 0.00 2.43
1821 1872 9.429359 CTAGAAATGATGGGCAATACTTACTAG 57.571 37.037 0.00 0.00 0.00 2.57
1823 1874 7.806180 ACTAGAAATGATGGGCAATACTTACT 58.194 34.615 0.00 0.00 0.00 2.24
1824 1875 9.555727 TTACTAGAAATGATGGGCAATACTTAC 57.444 33.333 0.00 0.00 0.00 2.34
1825 1876 9.778741 CTTACTAGAAATGATGGGCAATACTTA 57.221 33.333 0.00 0.00 0.00 2.24
1827 1878 7.806180 ACTTACTAGAAATGATGGGCAATACT 58.194 34.615 0.00 0.00 0.00 2.12
1828 1879 9.726438 ATACTTACTAGAAATGATGGGCAATAC 57.274 33.333 0.00 0.00 0.00 1.89
1830 1881 9.071276 CAATACTTACTAGAAATGATGGGCAAT 57.929 33.333 0.00 0.00 0.00 3.56
1831 1882 7.013274 GCAATACTTACTAGAAATGATGGGCAA 59.987 37.037 0.00 0.00 0.00 4.52
1832 1883 6.486657 GCAATACTTACTAGAAATGATGGGCA 59.513 38.462 0.00 0.00 0.00 5.36
1833 1884 6.486657 TGCAATACTTACTAGAAATGATGGGC 59.513 38.462 0.00 0.00 0.00 5.36
1860 1914 5.241506 TCACCTCCAACATGAGAAACATTTC 59.758 40.000 0.00 0.00 37.07 2.17
1869 1923 4.097741 TGTTTTGTTCACCTCCAACATGAG 59.902 41.667 0.00 0.00 33.76 2.90
1870 1924 4.019858 TGTTTTGTTCACCTCCAACATGA 58.980 39.130 0.00 0.00 33.76 3.07
1889 1944 3.594568 CGTGAGGCCATGCATGTT 58.405 55.556 24.58 10.34 0.00 2.71
1900 1955 2.093306 TTACAACATCAGGCGTGAGG 57.907 50.000 18.55 18.55 40.46 3.86
1901 1956 4.682787 TCTATTACAACATCAGGCGTGAG 58.317 43.478 15.18 9.32 35.66 3.51
1902 1957 4.729227 TCTATTACAACATCAGGCGTGA 57.271 40.909 12.13 12.13 37.02 4.35
1903 1958 5.755375 AGAATCTATTACAACATCAGGCGTG 59.245 40.000 0.00 0.00 0.00 5.34
1944 2066 8.643324 GGAAGTGGAAGTACACATAGATAAGAT 58.357 37.037 0.00 0.00 43.72 2.40
1945 2067 7.618117 TGGAAGTGGAAGTACACATAGATAAGA 59.382 37.037 0.00 0.00 43.72 2.10
2046 2171 7.917505 GGAATCACAGGATAAATTCACAACATC 59.082 37.037 0.00 0.00 32.09 3.06
2070 2195 4.341806 GCATAAACATGGTCATGAATGGGA 59.658 41.667 16.77 0.00 41.20 4.37
2073 2198 3.732219 GCGCATAAACATGGTCATGAATG 59.268 43.478 16.77 15.55 41.20 2.67
2114 2239 7.669722 ACCCAGATAGAAATGCTTGACTAAAAA 59.330 33.333 0.00 0.00 0.00 1.94
2175 2301 1.343465 AGCGGCGTAATACCAAGCTAT 59.657 47.619 9.37 0.00 0.00 2.97
2223 2349 0.839946 ATGCCACTGGGGTATCAGAC 59.160 55.000 0.00 0.00 37.43 3.51
2247 2373 4.580167 ACGGCAGCACATAAATAATGACAT 59.420 37.500 0.00 0.00 39.07 3.06
2250 2376 3.563808 GGACGGCAGCACATAAATAATGA 59.436 43.478 0.00 0.00 39.07 2.57
2268 2394 0.032403 TCCATATAAACGGCCGGACG 59.968 55.000 32.33 32.33 40.31 4.79
2323 3855 9.141400 TCGCACAAAATTATTACCCAAAATTAC 57.859 29.630 0.00 0.00 0.00 1.89
2336 3868 5.723295 AGAAATTGCCTCGCACAAAATTAT 58.277 33.333 0.00 0.00 38.71 1.28
2387 3962 2.187707 CAATAAGAAGCGCATTGTGCC 58.812 47.619 18.13 4.56 41.12 5.01
2388 3963 2.187707 CCAATAAGAAGCGCATTGTGC 58.812 47.619 14.27 14.27 40.69 4.57
2451 4250 5.466728 CACCAATATGTAGTATGCTCCACAC 59.533 44.000 0.00 0.00 0.00 3.82
2453 4252 4.997395 CCACCAATATGTAGTATGCTCCAC 59.003 45.833 0.00 0.00 0.00 4.02
2461 5080 4.410555 TGGCATGTCCACCAATATGTAGTA 59.589 41.667 4.93 0.00 40.72 1.82
2464 5083 3.941704 TGGCATGTCCACCAATATGTA 57.058 42.857 4.93 0.00 40.72 2.29
2465 5084 2.824689 TGGCATGTCCACCAATATGT 57.175 45.000 4.93 0.00 40.72 2.29
2475 5094 1.404035 GACCCGTAAAATGGCATGTCC 59.596 52.381 0.00 0.00 0.00 4.02
2476 5095 1.404035 GGACCCGTAAAATGGCATGTC 59.596 52.381 0.00 1.80 0.00 3.06
2477 5096 1.005450 AGGACCCGTAAAATGGCATGT 59.995 47.619 0.00 0.00 0.00 3.21
2478 5097 1.676006 GAGGACCCGTAAAATGGCATG 59.324 52.381 0.00 0.00 0.00 4.06
2479 5098 1.283613 TGAGGACCCGTAAAATGGCAT 59.716 47.619 0.00 0.00 0.00 4.40
2481 5100 1.828979 TTGAGGACCCGTAAAATGGC 58.171 50.000 0.00 0.00 0.00 4.40
2482 5101 4.461081 TGATTTTGAGGACCCGTAAAATGG 59.539 41.667 15.67 0.00 34.07 3.16
2483 5102 5.637006 TGATTTTGAGGACCCGTAAAATG 57.363 39.130 15.67 0.00 34.07 2.32
2484 5103 6.658188 TTTGATTTTGAGGACCCGTAAAAT 57.342 33.333 12.63 12.63 35.95 1.82
2486 5105 6.658188 ATTTTGATTTTGAGGACCCGTAAA 57.342 33.333 0.00 0.00 0.00 2.01
2487 5106 6.265649 TGAATTTTGATTTTGAGGACCCGTAA 59.734 34.615 0.00 0.00 0.00 3.18
2488 5107 5.770663 TGAATTTTGATTTTGAGGACCCGTA 59.229 36.000 0.00 0.00 0.00 4.02
2489 5108 4.586841 TGAATTTTGATTTTGAGGACCCGT 59.413 37.500 0.00 0.00 0.00 5.28
2490 5109 5.132897 TGAATTTTGATTTTGAGGACCCG 57.867 39.130 0.00 0.00 0.00 5.28
2491 5110 7.094677 CCAATTGAATTTTGATTTTGAGGACCC 60.095 37.037 7.12 0.00 0.00 4.46
2492 5111 7.445096 ACCAATTGAATTTTGATTTTGAGGACC 59.555 33.333 7.12 0.00 0.00 4.46
2494 5113 8.431222 AGACCAATTGAATTTTGATTTTGAGGA 58.569 29.630 7.12 0.00 0.00 3.71
2495 5114 8.611654 AGACCAATTGAATTTTGATTTTGAGG 57.388 30.769 7.12 0.00 0.00 3.86
2496 5115 9.485206 AGAGACCAATTGAATTTTGATTTTGAG 57.515 29.630 7.12 0.00 0.00 3.02
2498 5117 8.500773 CCAGAGACCAATTGAATTTTGATTTTG 58.499 33.333 7.12 0.00 0.00 2.44
2499 5118 8.431222 TCCAGAGACCAATTGAATTTTGATTTT 58.569 29.630 7.12 0.00 0.00 1.82
2500 5119 7.965718 TCCAGAGACCAATTGAATTTTGATTT 58.034 30.769 7.12 0.00 0.00 2.17
2501 5120 7.543359 TCCAGAGACCAATTGAATTTTGATT 57.457 32.000 7.12 0.00 0.00 2.57
2502 5121 7.398047 TGATCCAGAGACCAATTGAATTTTGAT 59.602 33.333 7.12 0.84 0.00 2.57
2504 5123 6.927416 TGATCCAGAGACCAATTGAATTTTG 58.073 36.000 7.12 0.00 0.00 2.44
2505 5124 7.398047 TGATGATCCAGAGACCAATTGAATTTT 59.602 33.333 7.12 0.00 0.00 1.82
2507 5126 6.429151 TGATGATCCAGAGACCAATTGAATT 58.571 36.000 7.12 0.00 0.00 2.17
2508 5127 6.009908 TGATGATCCAGAGACCAATTGAAT 57.990 37.500 7.12 0.00 0.00 2.57
2509 5128 5.440207 TGATGATCCAGAGACCAATTGAA 57.560 39.130 7.12 0.00 0.00 2.69
2511 5130 4.519350 CCATGATGATCCAGAGACCAATTG 59.481 45.833 0.00 0.00 0.00 2.32
2513 5132 3.978672 TCCATGATGATCCAGAGACCAAT 59.021 43.478 0.00 0.00 0.00 3.16
2514 5133 3.387012 TCCATGATGATCCAGAGACCAA 58.613 45.455 0.00 0.00 0.00 3.67
2517 5136 3.495806 GGGTTCCATGATGATCCAGAGAC 60.496 52.174 0.00 0.00 0.00 3.36
2520 5139 2.440627 CAGGGTTCCATGATGATCCAGA 59.559 50.000 0.00 0.00 0.00 3.86
2521 5140 2.488528 CCAGGGTTCCATGATGATCCAG 60.489 54.545 5.02 0.00 0.00 3.86
2522 5141 1.496001 CCAGGGTTCCATGATGATCCA 59.504 52.381 5.02 0.00 0.00 3.41
2525 5144 3.058341 TGATCCAGGGTTCCATGATGAT 58.942 45.455 5.02 0.62 0.00 2.45
2526 5145 2.490961 TGATCCAGGGTTCCATGATGA 58.509 47.619 5.02 0.00 0.00 2.92
2528 5147 3.058341 TGATGATCCAGGGTTCCATGAT 58.942 45.455 5.02 0.00 0.00 2.45
2529 5148 2.490961 TGATGATCCAGGGTTCCATGA 58.509 47.619 5.02 0.00 0.00 3.07
2530 5149 3.181437 TGATGATGATCCAGGGTTCCATG 60.181 47.826 0.00 0.00 0.00 3.66
2532 5151 2.173356 GTGATGATGATCCAGGGTTCCA 59.827 50.000 0.00 0.00 0.00 3.53
2534 5153 2.487934 CGTGATGATGATCCAGGGTTC 58.512 52.381 0.00 0.00 0.00 3.62
2535 5154 1.141657 CCGTGATGATGATCCAGGGTT 59.858 52.381 3.28 0.00 0.00 4.11
2536 5155 0.761187 CCGTGATGATGATCCAGGGT 59.239 55.000 3.28 0.00 0.00 4.34
2537 5156 0.035881 CCCGTGATGATGATCCAGGG 59.964 60.000 7.45 7.45 37.71 4.45
2538 5157 1.051008 TCCCGTGATGATGATCCAGG 58.949 55.000 0.00 0.00 0.00 4.45
2539 5158 2.916702 TTCCCGTGATGATGATCCAG 57.083 50.000 0.00 0.00 0.00 3.86
2540 5159 2.224597 CCATTCCCGTGATGATGATCCA 60.225 50.000 0.00 0.00 0.00 3.41
2541 5160 2.430465 CCATTCCCGTGATGATGATCC 58.570 52.381 0.00 0.00 0.00 3.36
2542 5161 1.808945 GCCATTCCCGTGATGATGATC 59.191 52.381 0.00 0.00 0.00 2.92
2543 5162 1.143481 TGCCATTCCCGTGATGATGAT 59.857 47.619 0.00 0.00 0.00 2.45
2544 5163 0.545646 TGCCATTCCCGTGATGATGA 59.454 50.000 0.00 0.00 0.00 2.92
2545 5164 0.664761 GTGCCATTCCCGTGATGATG 59.335 55.000 0.00 0.00 0.00 3.07
2547 5166 0.327924 AAGTGCCATTCCCGTGATGA 59.672 50.000 0.00 0.00 0.00 2.92
2548 5167 0.734889 GAAGTGCCATTCCCGTGATG 59.265 55.000 0.00 0.00 0.00 3.07
2549 5168 0.744414 CGAAGTGCCATTCCCGTGAT 60.744 55.000 0.00 0.00 0.00 3.06
2550 5169 1.375396 CGAAGTGCCATTCCCGTGA 60.375 57.895 0.00 0.00 0.00 4.35
2551 5170 2.398554 CCGAAGTGCCATTCCCGTG 61.399 63.158 0.00 0.00 0.00 4.94
2552 5171 2.046314 CCGAAGTGCCATTCCCGT 60.046 61.111 0.00 0.00 0.00 5.28
2553 5172 1.674322 AACCGAAGTGCCATTCCCG 60.674 57.895 0.00 0.00 0.00 5.14
2554 5173 0.893727 ACAACCGAAGTGCCATTCCC 60.894 55.000 0.00 0.00 0.00 3.97
2555 5174 0.240945 CACAACCGAAGTGCCATTCC 59.759 55.000 0.00 0.00 0.00 3.01
2557 5176 0.179004 TCCACAACCGAAGTGCCATT 60.179 50.000 0.00 0.00 35.69 3.16
2559 5178 1.227823 CTCCACAACCGAAGTGCCA 60.228 57.895 0.00 0.00 35.69 4.92
2560 5179 0.951040 CTCTCCACAACCGAAGTGCC 60.951 60.000 0.00 0.00 35.69 5.01
2561 5180 0.951040 CCTCTCCACAACCGAAGTGC 60.951 60.000 0.00 0.00 35.69 4.40
2562 5181 0.320771 CCCTCTCCACAACCGAAGTG 60.321 60.000 0.00 0.00 36.76 3.16
2563 5182 1.481056 CCCCTCTCCACAACCGAAGT 61.481 60.000 0.00 0.00 0.00 3.01
2565 5184 2.890766 GCCCCTCTCCACAACCGAA 61.891 63.158 0.00 0.00 0.00 4.30
2567 5186 3.612247 CTGCCCCTCTCCACAACCG 62.612 68.421 0.00 0.00 0.00 4.44
2569 5188 2.360475 GCTGCCCCTCTCCACAAC 60.360 66.667 0.00 0.00 0.00 3.32
2571 5190 3.252585 TAGGCTGCCCCTCTCCACA 62.253 63.158 16.57 0.00 44.96 4.17
2573 5192 2.365635 GTAGGCTGCCCCTCTCCA 60.366 66.667 16.57 0.00 44.96 3.86
2592 5211 2.435059 GAGGCGCTGGGTCAAGAC 60.435 66.667 7.64 0.00 0.00 3.01
2593 5212 3.706373 GGAGGCGCTGGGTCAAGA 61.706 66.667 7.64 0.00 0.00 3.02
2594 5213 2.826777 ATTGGAGGCGCTGGGTCAAG 62.827 60.000 7.64 0.00 0.00 3.02
2596 5215 2.819984 GAATTGGAGGCGCTGGGTCA 62.820 60.000 7.64 0.00 0.00 4.02
2597 5216 2.044946 AATTGGAGGCGCTGGGTC 60.045 61.111 7.64 0.00 0.00 4.46
2598 5217 2.044946 GAATTGGAGGCGCTGGGT 60.045 61.111 7.64 0.00 0.00 4.51
2600 5219 0.962356 AACAGAATTGGAGGCGCTGG 60.962 55.000 7.64 0.00 0.00 4.85
2601 5220 1.667724 CTAACAGAATTGGAGGCGCTG 59.332 52.381 7.64 0.00 0.00 5.18
2603 5222 1.017387 CCTAACAGAATTGGAGGCGC 58.983 55.000 0.00 0.00 0.00 6.53
2604 5223 1.017387 GCCTAACAGAATTGGAGGCG 58.983 55.000 6.89 0.00 43.39 5.52
2606 5225 3.019564 CAAGGCCTAACAGAATTGGAGG 58.980 50.000 5.16 0.00 35.62 4.30
2609 5228 3.119849 CGAACAAGGCCTAACAGAATTGG 60.120 47.826 5.16 0.00 0.00 3.16
2610 5229 3.119849 CCGAACAAGGCCTAACAGAATTG 60.120 47.826 5.16 0.00 0.00 2.32
2611 5230 3.081804 CCGAACAAGGCCTAACAGAATT 58.918 45.455 5.16 0.00 0.00 2.17
2613 5232 1.418637 ACCGAACAAGGCCTAACAGAA 59.581 47.619 5.16 0.00 33.69 3.02
2614 5233 1.053424 ACCGAACAAGGCCTAACAGA 58.947 50.000 5.16 0.00 33.69 3.41
2615 5234 1.892209 AACCGAACAAGGCCTAACAG 58.108 50.000 5.16 0.00 33.69 3.16
2616 5235 2.872842 GCTAACCGAACAAGGCCTAACA 60.873 50.000 5.16 0.00 33.69 2.41
2617 5236 1.736126 GCTAACCGAACAAGGCCTAAC 59.264 52.381 5.16 0.00 33.69 2.34
2618 5237 1.339342 GGCTAACCGAACAAGGCCTAA 60.339 52.381 5.16 0.00 36.96 2.69
2619 5238 0.251073 GGCTAACCGAACAAGGCCTA 59.749 55.000 5.16 0.00 36.96 3.93
2620 5239 1.002502 GGCTAACCGAACAAGGCCT 60.003 57.895 0.00 0.00 36.96 5.19
2622 5241 2.044555 GGGGCTAACCGAACAAGGC 61.045 63.158 0.00 0.00 41.60 4.35
2623 5242 0.392595 GAGGGGCTAACCGAACAAGG 60.393 60.000 0.00 0.00 41.60 3.61
2624 5243 0.613777 AGAGGGGCTAACCGAACAAG 59.386 55.000 0.00 0.00 41.60 3.16
2625 5244 0.611714 GAGAGGGGCTAACCGAACAA 59.388 55.000 0.00 0.00 41.60 2.83
2626 5245 1.262640 GGAGAGGGGCTAACCGAACA 61.263 60.000 0.00 0.00 41.60 3.18
2627 5246 1.521141 GGAGAGGGGCTAACCGAAC 59.479 63.158 0.00 0.00 41.60 3.95
2628 5247 1.688187 GGGAGAGGGGCTAACCGAA 60.688 63.158 0.00 0.00 41.60 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.