Multiple sequence alignment - TraesCS4B01G129000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G129000 chr4B 100.000 4854 0 0 1 4854 168709093 168704240 0.000000e+00 8964.0
1 TraesCS4B01G129000 chr4D 95.307 4262 119 30 1 4236 108010920 108015126 0.000000e+00 6687.0
2 TraesCS4B01G129000 chr4D 93.367 196 9 3 4434 4629 108015279 108015470 2.210000e-73 287.0
3 TraesCS4B01G129000 chr4D 94.318 88 3 1 4263 4350 108015195 108015280 3.050000e-27 134.0
4 TraesCS4B01G129000 chr4A 94.558 4263 139 38 5 4236 468252439 468248239 0.000000e+00 6501.0
5 TraesCS4B01G129000 chrUn 90.909 110 8 2 2034 2143 277176621 277176514 3.910000e-31 147.0
6 TraesCS4B01G129000 chrUn 91.589 107 7 2 2034 2140 300683334 300683438 3.910000e-31 147.0
7 TraesCS4B01G129000 chr7D 88.430 121 10 3 2027 2146 400205244 400205127 5.060000e-30 143.0
8 TraesCS4B01G129000 chr3D 88.430 121 10 3 2027 2146 141406650 141406767 5.060000e-30 143.0
9 TraesCS4B01G129000 chr3D 90.526 95 7 1 4348 4442 283326056 283325964 1.830000e-24 124.0
10 TraesCS4B01G129000 chr2A 88.596 114 10 2 2034 2146 23429830 23429719 8.470000e-28 135.0
11 TraesCS4B01G129000 chr2A 87.500 112 5 7 4331 4436 348617576 348617684 2.370000e-23 121.0
12 TraesCS4B01G129000 chr2A 89.109 101 6 4 4348 4447 362443163 362443067 2.370000e-23 121.0
13 TraesCS4B01G129000 chr6B 87.826 115 11 2 2026 2140 430583885 430583774 1.100000e-26 132.0
14 TraesCS4B01G129000 chr2D 92.553 94 3 3 4347 4439 536926292 536926382 1.100000e-26 132.0
15 TraesCS4B01G129000 chr1B 87.719 114 11 2 2034 2146 53255417 53255528 3.940000e-26 130.0
16 TraesCS4B01G129000 chr3B 93.258 89 3 2 4349 4436 270890802 270890888 1.420000e-25 128.0
17 TraesCS4B01G129000 chr7B 90.625 96 5 3 4348 4441 201496562 201496469 1.830000e-24 124.0
18 TraesCS4B01G129000 chr5B 90.625 96 6 2 4347 4441 344333005 344333098 1.830000e-24 124.0
19 TraesCS4B01G129000 chr5B 87.736 106 8 4 4347 4451 517217415 517217516 8.530000e-23 119.0
20 TraesCS4B01G129000 chr3A 87.736 106 8 4 4349 4451 488042632 488042529 8.530000e-23 119.0
21 TraesCS4B01G129000 chr5A 78.846 104 19 3 4552 4653 529370744 529370642 3.140000e-07 67.6
22 TraesCS4B01G129000 chr5D 100.000 30 0 0 4772 4801 416602038 416602009 6.790000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G129000 chr4B 168704240 168709093 4853 True 8964.000000 8964 100.000000 1 4854 1 chr4B.!!$R1 4853
1 TraesCS4B01G129000 chr4D 108010920 108015470 4550 False 2369.333333 6687 94.330667 1 4629 3 chr4D.!!$F1 4628
2 TraesCS4B01G129000 chr4A 468248239 468252439 4200 True 6501.000000 6501 94.558000 5 4236 1 chr4A.!!$R1 4231

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 199 1.482593 ACGTTTGGTTGCCATTCCAAA 59.517 42.857 9.52 9.52 46.93 3.28 F
261 263 1.637553 AGGAATCAGGATGCAGGTTGT 59.362 47.619 0.00 0.00 34.76 3.32 F
876 882 1.679139 TGGTGGCTGTGTTTCAGAAG 58.321 50.000 0.00 0.00 46.27 2.85 F
1670 1692 1.153168 AACCAGCACACTTCACGCT 60.153 52.632 0.00 0.00 36.10 5.07 F
3442 3470 0.250338 AGGCGAAGAAGTTGGTGGAC 60.250 55.000 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1106 1114 0.040058 TGATGGAACTTGCAGCCCAT 59.960 50.000 9.89 9.89 41.70 4.00 R
1107 1115 0.178967 TTGATGGAACTTGCAGCCCA 60.179 50.000 0.00 0.00 0.00 5.36 R
2720 2745 1.303888 CTCTGTGGGGCAAGTGCAT 60.304 57.895 5.52 0.00 44.36 3.96 R
3736 3764 1.758783 CGATCTCGACGATGAATGCA 58.241 50.000 0.00 0.00 43.02 3.96 R
4810 4887 0.109723 CCACCTTTGACCCCGAAAGA 59.890 55.000 0.00 0.00 33.01 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.031870 ACTTGGAAAAGGCTGGTCAAC 58.968 47.619 0.00 0.00 0.00 3.18
75 76 6.389906 AGCTTGCCAACATAATTTACAAGAC 58.610 36.000 0.00 0.00 36.08 3.01
81 82 9.688091 TGCCAACATAATTTACAAGACCTATTA 57.312 29.630 0.00 0.00 0.00 0.98
102 103 3.740115 ACACACATACACACTTCCCTTC 58.260 45.455 0.00 0.00 0.00 3.46
197 199 1.482593 ACGTTTGGTTGCCATTCCAAA 59.517 42.857 9.52 9.52 46.93 3.28
207 209 6.781507 TGGTTGCCATTCCAAATATATGATCA 59.218 34.615 0.00 0.00 0.00 2.92
247 249 3.062234 CGGTTTAGTTCTTGCGAGGAATC 59.938 47.826 0.00 0.00 0.00 2.52
261 263 1.637553 AGGAATCAGGATGCAGGTTGT 59.362 47.619 0.00 0.00 34.76 3.32
267 269 3.146066 TCAGGATGCAGGTTGTTACAAC 58.854 45.455 18.85 18.85 34.76 3.32
271 273 3.505680 GGATGCAGGTTGTTACAACATGA 59.494 43.478 36.15 24.33 38.95 3.07
295 297 4.133820 TGCTAGTGTGCTAACAAATGTGT 58.866 39.130 0.00 0.00 38.27 3.72
296 298 4.024133 TGCTAGTGTGCTAACAAATGTGTG 60.024 41.667 0.00 0.00 38.27 3.82
297 299 4.213270 GCTAGTGTGCTAACAAATGTGTGA 59.787 41.667 0.00 0.00 38.27 3.58
298 300 5.277779 GCTAGTGTGCTAACAAATGTGTGAA 60.278 40.000 0.00 0.00 38.27 3.18
535 541 4.873746 TCAAAGAAGACTAGGACACCTG 57.126 45.455 0.00 0.00 34.61 4.00
635 641 2.931969 CACATGCTTTGCTATCGTCTGA 59.068 45.455 0.00 0.00 0.00 3.27
735 741 3.976015 TGGTATTTGAGGGAATGGGTTC 58.024 45.455 0.00 0.00 0.00 3.62
758 764 5.010012 TCTCCTTTTTGAAATCAGTCCTTGC 59.990 40.000 0.00 0.00 0.00 4.01
782 788 6.575162 TTGTTCCTTTCTTTTCTGATAGGC 57.425 37.500 0.00 0.00 35.87 3.93
876 882 1.679139 TGGTGGCTGTGTTTCAGAAG 58.321 50.000 0.00 0.00 46.27 2.85
887 893 5.189928 TGTGTTTCAGAAGAACAAGCCTTA 58.810 37.500 0.00 0.00 32.39 2.69
942 948 6.560003 TTTCCATCTGCCTGACTTATTCTA 57.440 37.500 0.00 0.00 0.00 2.10
1096 1104 6.604735 AGGTAACGTCTATTCATTTGATGC 57.395 37.500 0.00 0.00 46.39 3.91
1097 1105 6.112734 AGGTAACGTCTATTCATTTGATGCA 58.887 36.000 0.00 0.00 46.39 3.96
1098 1106 6.258727 AGGTAACGTCTATTCATTTGATGCAG 59.741 38.462 0.00 0.00 46.39 4.41
1099 1107 6.037172 GGTAACGTCTATTCATTTGATGCAGT 59.963 38.462 0.00 0.00 0.00 4.40
1100 1108 7.223971 GGTAACGTCTATTCATTTGATGCAGTA 59.776 37.037 0.00 0.00 0.00 2.74
1101 1109 6.834959 ACGTCTATTCATTTGATGCAGTAG 57.165 37.500 0.00 0.00 0.00 2.57
1102 1110 6.573434 ACGTCTATTCATTTGATGCAGTAGA 58.427 36.000 0.00 0.00 0.00 2.59
1103 1111 7.212976 ACGTCTATTCATTTGATGCAGTAGAT 58.787 34.615 0.00 0.00 0.00 1.98
1104 1112 7.170489 ACGTCTATTCATTTGATGCAGTAGATG 59.830 37.037 0.00 0.00 34.34 2.90
1105 1113 7.383300 CGTCTATTCATTTGATGCAGTAGATGA 59.617 37.037 0.00 0.00 32.37 2.92
1106 1114 9.049523 GTCTATTCATTTGATGCAGTAGATGAA 57.950 33.333 16.23 16.23 37.74 2.57
1107 1115 9.788889 TCTATTCATTTGATGCAGTAGATGAAT 57.211 29.630 23.28 23.28 43.06 2.57
1108 1116 9.827411 CTATTCATTTGATGCAGTAGATGAATG 57.173 33.333 25.72 17.74 41.60 2.67
1109 1117 6.628919 TCATTTGATGCAGTAGATGAATGG 57.371 37.500 0.00 0.00 0.00 3.16
1220 1228 3.025262 GGTAGGAACTCTTCATCGAGGT 58.975 50.000 0.00 0.00 41.75 3.85
1320 1329 1.795286 CACCGTGTTTCTCTCTTCTGC 59.205 52.381 0.00 0.00 0.00 4.26
1335 1344 8.430431 TCTCTCTTCTGCAATTCATGATAAGAT 58.570 33.333 0.00 0.00 0.00 2.40
1434 1443 7.657336 TGGTTAAGACTAAAAAGCAATCCAAG 58.343 34.615 0.00 0.00 0.00 3.61
1481 1490 6.364976 GCTAAAGTAATTCGGTGTTTGCATTT 59.635 34.615 0.00 0.00 0.00 2.32
1523 1532 1.228583 AGTCCAGAGCACTCACCGA 60.229 57.895 0.00 0.00 0.00 4.69
1573 1582 6.182507 TCCTTCTTCAAAAGTACAAGCCTA 57.817 37.500 0.00 0.00 0.00 3.93
1585 1594 6.013842 AGTACAAGCCTAAAATTCAGCAAC 57.986 37.500 0.00 0.00 0.00 4.17
1587 1596 6.940298 AGTACAAGCCTAAAATTCAGCAACTA 59.060 34.615 0.00 0.00 0.00 2.24
1670 1692 1.153168 AACCAGCACACTTCACGCT 60.153 52.632 0.00 0.00 36.10 5.07
1679 1701 3.626977 CACACTTCACGCTGCAAATAAA 58.373 40.909 0.00 0.00 0.00 1.40
1725 1748 8.340618 TCAAATTCAGATAGTTTTCCTCCTTG 57.659 34.615 0.00 0.00 0.00 3.61
2117 2142 3.457234 GGGTTCTTTTGCTTGAAAGGTG 58.543 45.455 7.58 0.00 37.27 4.00
2600 2625 4.390556 AGCCAGTCCGCCTCTCCT 62.391 66.667 0.00 0.00 0.00 3.69
2654 2679 2.767536 CGACCCATCGCAGTTTCAT 58.232 52.632 0.00 0.00 42.43 2.57
2660 2685 4.526970 ACCCATCGCAGTTTCATAAGAAT 58.473 39.130 0.00 0.00 32.89 2.40
2733 2758 1.153524 AAGTCATGCACTTGCCCCA 59.846 52.632 9.00 0.00 44.28 4.96
2735 2760 1.902918 GTCATGCACTTGCCCCACA 60.903 57.895 0.00 0.00 41.18 4.17
3442 3470 0.250338 AGGCGAAGAAGTTGGTGGAC 60.250 55.000 0.00 0.00 0.00 4.02
3443 3471 0.534203 GGCGAAGAAGTTGGTGGACA 60.534 55.000 0.00 0.00 0.00 4.02
3583 3611 2.680312 ACTCCGACAGCTACTACGTA 57.320 50.000 0.00 0.00 0.00 3.57
3862 3890 0.459585 GGCAACCGTAGCGAGAATCA 60.460 55.000 0.00 0.00 33.17 2.57
3885 3913 0.171007 ATCGATTTGCGCAAGTTGGG 59.829 50.000 26.87 15.22 40.61 4.12
3946 3978 5.067153 CGCCACTGATAATCTAGGAGATAGG 59.933 48.000 0.00 0.00 32.89 2.57
4054 4086 3.406764 GCTCTCTCTGACACCAAATGTT 58.593 45.455 0.00 0.00 43.56 2.71
4055 4087 3.817647 GCTCTCTCTGACACCAAATGTTT 59.182 43.478 0.00 0.00 43.56 2.83
4056 4088 4.083590 GCTCTCTCTGACACCAAATGTTTC 60.084 45.833 0.00 0.00 43.56 2.78
4057 4089 4.389374 TCTCTCTGACACCAAATGTTTCC 58.611 43.478 0.00 0.00 43.56 3.13
4058 4090 3.486383 TCTCTGACACCAAATGTTTCCC 58.514 45.455 0.00 0.00 43.56 3.97
4215 4252 4.858692 GGATCAATTGTCCATTTGTCAACG 59.141 41.667 17.20 0.00 35.76 4.10
4270 4322 8.697507 ACTGACTTTTAGAAGATGGTTTGATT 57.302 30.769 0.00 0.00 36.69 2.57
4271 4323 9.136323 ACTGACTTTTAGAAGATGGTTTGATTT 57.864 29.630 0.00 0.00 36.69 2.17
4300 4377 8.897752 ACTAGCCTTATTGAATTCTGTGAAATC 58.102 33.333 7.05 0.00 0.00 2.17
4303 4380 6.470235 GCCTTATTGAATTCTGTGAAATCGTG 59.530 38.462 7.05 0.00 0.00 4.35
4314 4391 4.051237 TGTGAAATCGTGTGAAGACAGAG 58.949 43.478 0.00 0.00 30.74 3.35
4352 4429 3.971245 CTGGAAGCTTCTGGTCTACTT 57.029 47.619 25.05 0.00 0.00 2.24
4353 4430 3.855858 CTGGAAGCTTCTGGTCTACTTC 58.144 50.000 25.05 5.81 36.78 3.01
4354 4431 3.254470 GGAAGCTTCTGGTCTACTTCC 57.746 52.381 25.05 4.48 46.85 3.46
4356 4433 4.118093 GAAGCTTCTGGTCTACTTCCTC 57.882 50.000 19.44 0.00 32.45 3.71
4357 4434 2.462723 AGCTTCTGGTCTACTTCCTCC 58.537 52.381 0.00 0.00 0.00 4.30
4358 4435 1.135333 GCTTCTGGTCTACTTCCTCCG 59.865 57.143 0.00 0.00 0.00 4.63
4359 4436 2.448453 CTTCTGGTCTACTTCCTCCGT 58.552 52.381 0.00 0.00 0.00 4.69
4360 4437 2.599408 TCTGGTCTACTTCCTCCGTT 57.401 50.000 0.00 0.00 0.00 4.44
4361 4438 2.444421 TCTGGTCTACTTCCTCCGTTC 58.556 52.381 0.00 0.00 0.00 3.95
4362 4439 1.477295 CTGGTCTACTTCCTCCGTTCC 59.523 57.143 0.00 0.00 0.00 3.62
4363 4440 1.203087 TGGTCTACTTCCTCCGTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
4364 4441 1.897802 GGTCTACTTCCTCCGTTCCAA 59.102 52.381 0.00 0.00 0.00 3.53
4365 4442 2.301009 GGTCTACTTCCTCCGTTCCAAA 59.699 50.000 0.00 0.00 0.00 3.28
4366 4443 3.244318 GGTCTACTTCCTCCGTTCCAAAA 60.244 47.826 0.00 0.00 0.00 2.44
4367 4444 4.565028 GGTCTACTTCCTCCGTTCCAAAAT 60.565 45.833 0.00 0.00 0.00 1.82
4368 4445 5.337813 GGTCTACTTCCTCCGTTCCAAAATA 60.338 44.000 0.00 0.00 0.00 1.40
4369 4446 5.811100 GTCTACTTCCTCCGTTCCAAAATAG 59.189 44.000 0.00 0.00 0.00 1.73
4370 4447 4.903045 ACTTCCTCCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
4371 4448 5.437191 ACTTCCTCCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
4372 4449 5.186198 ACTTCCTCCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
4373 4450 5.045869 ACTTCCTCCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
4374 4451 4.766375 TCCTCCGTTCCAAAATAGATGAC 58.234 43.478 0.00 0.00 0.00 3.06
4375 4452 4.469945 TCCTCCGTTCCAAAATAGATGACT 59.530 41.667 0.00 0.00 0.00 3.41
4376 4453 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
4377 4454 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4378 4455 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4379 4456 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4380 4457 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4381 4458 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4382 4459 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4383 4460 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
4384 4461 8.567948 GTTCCAAAATAGATGACTCAACTTTGA 58.432 33.333 0.00 0.00 35.57 2.69
4385 4462 8.099364 TCCAAAATAGATGACTCAACTTTGAC 57.901 34.615 0.00 0.00 32.90 3.18
4386 4463 7.939039 TCCAAAATAGATGACTCAACTTTGACT 59.061 33.333 0.00 0.00 32.90 3.41
4387 4464 9.219603 CCAAAATAGATGACTCAACTTTGACTA 57.780 33.333 0.00 0.00 32.90 2.59
4408 4485 9.745880 TGACTAAAGTTAGTACAAAGTCTTGAG 57.254 33.333 3.72 0.00 43.64 3.02
4409 4486 9.747293 GACTAAAGTTAGTACAAAGTCTTGAGT 57.253 33.333 3.72 1.42 43.64 3.41
4426 4503 9.706691 AGTCTTGAGTAATCTATTTTGAAACGA 57.293 29.630 0.00 0.00 0.00 3.85
4429 4506 9.760660 CTTGAGTAATCTATTTTGAAACGAAGG 57.239 33.333 0.00 0.00 0.00 3.46
4430 4507 8.263940 TGAGTAATCTATTTTGAAACGAAGGG 57.736 34.615 0.00 0.00 0.00 3.95
4431 4508 8.098286 TGAGTAATCTATTTTGAAACGAAGGGA 58.902 33.333 0.00 0.00 0.00 4.20
4432 4509 8.494016 AGTAATCTATTTTGAAACGAAGGGAG 57.506 34.615 0.00 0.00 0.00 4.30
4433 4510 8.101419 AGTAATCTATTTTGAAACGAAGGGAGT 58.899 33.333 0.00 0.00 0.00 3.85
4474 4551 5.549619 TGGTTAATTTTGGTGGGATTCCATT 59.450 36.000 0.00 0.00 46.09 3.16
4481 4558 3.902218 TGGTGGGATTCCATTTGATCTC 58.098 45.455 0.00 0.00 46.09 2.75
4499 4576 9.607988 TTTGATCTCAAAGTTTGTACTACTTGA 57.392 29.630 15.08 11.18 40.55 3.02
4549 4626 4.976540 ATGTACCTGTAATAAGCCCTCC 57.023 45.455 0.00 0.00 0.00 4.30
4559 4636 7.400339 CCTGTAATAAGCCCTCCAGATAATCTA 59.600 40.741 0.00 0.00 0.00 1.98
4568 4645 4.420168 CTCCAGATAATCTAGCTAAGCGC 58.580 47.826 0.00 0.00 39.57 5.92
4573 4650 4.520874 AGATAATCTAGCTAAGCGCAGACA 59.479 41.667 11.47 0.00 42.61 3.41
4594 4671 7.328982 CAGACATGTAGATGATCTATCTTGTGC 59.671 40.741 18.62 13.46 43.68 4.57
4610 4687 3.290948 TGTGCCTTTTGTAGTGAACCT 57.709 42.857 0.00 0.00 0.00 3.50
4659 4736 2.228138 CATTGTTGCAAAGCACACCT 57.772 45.000 0.00 0.00 38.71 4.00
4660 4737 1.862201 CATTGTTGCAAAGCACACCTG 59.138 47.619 0.00 0.00 38.71 4.00
4661 4738 0.175302 TTGTTGCAAAGCACACCTGG 59.825 50.000 0.00 0.00 38.71 4.45
4662 4739 1.067916 GTTGCAAAGCACACCTGGG 59.932 57.895 0.00 0.00 38.71 4.45
4663 4740 1.076412 TTGCAAAGCACACCTGGGA 60.076 52.632 0.00 0.00 38.71 4.37
4664 4741 0.685785 TTGCAAAGCACACCTGGGAA 60.686 50.000 0.00 0.00 38.71 3.97
4665 4742 1.363807 GCAAAGCACACCTGGGAAC 59.636 57.895 0.00 0.00 0.00 3.62
4684 4761 6.136541 GGAACCTATTGCTCATAAACTTGG 57.863 41.667 0.00 0.00 0.00 3.61
4685 4762 5.652452 GGAACCTATTGCTCATAAACTTGGT 59.348 40.000 0.00 0.00 0.00 3.67
4686 4763 6.826741 GGAACCTATTGCTCATAAACTTGGTA 59.173 38.462 0.00 0.00 0.00 3.25
4687 4764 7.502561 GGAACCTATTGCTCATAAACTTGGTAT 59.497 37.037 0.00 0.00 0.00 2.73
4688 4765 8.823220 AACCTATTGCTCATAAACTTGGTATT 57.177 30.769 0.00 0.00 0.00 1.89
4689 4766 8.225603 ACCTATTGCTCATAAACTTGGTATTG 57.774 34.615 0.00 0.00 0.00 1.90
4690 4767 7.834181 ACCTATTGCTCATAAACTTGGTATTGT 59.166 33.333 0.00 0.00 0.00 2.71
4691 4768 8.686334 CCTATTGCTCATAAACTTGGTATTGTT 58.314 33.333 0.00 0.00 0.00 2.83
4692 4769 9.507280 CTATTGCTCATAAACTTGGTATTGTTG 57.493 33.333 0.00 0.00 0.00 3.33
4693 4770 6.892658 TGCTCATAAACTTGGTATTGTTGT 57.107 33.333 0.00 0.00 0.00 3.32
4694 4771 7.987750 TGCTCATAAACTTGGTATTGTTGTA 57.012 32.000 0.00 0.00 0.00 2.41
4695 4772 7.812648 TGCTCATAAACTTGGTATTGTTGTAC 58.187 34.615 0.00 0.00 0.00 2.90
4696 4773 7.094549 TGCTCATAAACTTGGTATTGTTGTACC 60.095 37.037 0.00 0.00 43.61 3.34
4697 4774 7.627726 GCTCATAAACTTGGTATTGTTGTACCC 60.628 40.741 1.01 0.00 42.85 3.69
4698 4775 7.463431 TCATAAACTTGGTATTGTTGTACCCT 58.537 34.615 1.01 0.00 42.85 4.34
4699 4776 7.392113 TCATAAACTTGGTATTGTTGTACCCTG 59.608 37.037 1.01 0.00 42.85 4.45
4700 4777 4.717279 ACTTGGTATTGTTGTACCCTGT 57.283 40.909 1.01 0.00 42.85 4.00
4701 4778 5.056553 ACTTGGTATTGTTGTACCCTGTT 57.943 39.130 1.01 0.00 42.85 3.16
4702 4779 5.067954 ACTTGGTATTGTTGTACCCTGTTC 58.932 41.667 1.01 0.00 42.85 3.18
4703 4780 4.986054 TGGTATTGTTGTACCCTGTTCT 57.014 40.909 1.01 0.00 42.85 3.01
4704 4781 5.313280 TGGTATTGTTGTACCCTGTTCTT 57.687 39.130 1.01 0.00 42.85 2.52
4705 4782 5.697067 TGGTATTGTTGTACCCTGTTCTTT 58.303 37.500 1.01 0.00 42.85 2.52
4706 4783 5.766174 TGGTATTGTTGTACCCTGTTCTTTC 59.234 40.000 1.01 0.00 42.85 2.62
4707 4784 6.002082 GGTATTGTTGTACCCTGTTCTTTCT 58.998 40.000 0.00 0.00 38.54 2.52
4708 4785 6.148976 GGTATTGTTGTACCCTGTTCTTTCTC 59.851 42.308 0.00 0.00 38.54 2.87
4709 4786 5.367945 TTGTTGTACCCTGTTCTTTCTCT 57.632 39.130 0.00 0.00 0.00 3.10
4710 4787 6.488769 TTGTTGTACCCTGTTCTTTCTCTA 57.511 37.500 0.00 0.00 0.00 2.43
4711 4788 6.488769 TGTTGTACCCTGTTCTTTCTCTAA 57.511 37.500 0.00 0.00 0.00 2.10
4712 4789 7.074653 TGTTGTACCCTGTTCTTTCTCTAAT 57.925 36.000 0.00 0.00 0.00 1.73
4713 4790 7.514721 TGTTGTACCCTGTTCTTTCTCTAATT 58.485 34.615 0.00 0.00 0.00 1.40
4714 4791 7.996644 TGTTGTACCCTGTTCTTTCTCTAATTT 59.003 33.333 0.00 0.00 0.00 1.82
4715 4792 9.498176 GTTGTACCCTGTTCTTTCTCTAATTTA 57.502 33.333 0.00 0.00 0.00 1.40
4716 4793 9.720769 TTGTACCCTGTTCTTTCTCTAATTTAG 57.279 33.333 0.00 0.00 0.00 1.85
4717 4794 7.822822 TGTACCCTGTTCTTTCTCTAATTTAGC 59.177 37.037 0.00 0.00 0.00 3.09
4718 4795 7.021998 ACCCTGTTCTTTCTCTAATTTAGCT 57.978 36.000 0.00 0.00 0.00 3.32
4719 4796 6.881602 ACCCTGTTCTTTCTCTAATTTAGCTG 59.118 38.462 0.00 0.00 0.00 4.24
4720 4797 6.881602 CCCTGTTCTTTCTCTAATTTAGCTGT 59.118 38.462 0.00 0.00 0.00 4.40
4721 4798 7.391833 CCCTGTTCTTTCTCTAATTTAGCTGTT 59.608 37.037 0.00 0.00 0.00 3.16
4722 4799 9.436957 CCTGTTCTTTCTCTAATTTAGCTGTTA 57.563 33.333 0.00 0.00 0.00 2.41
4727 4804 9.823647 TCTTTCTCTAATTTAGCTGTTATCTGG 57.176 33.333 0.00 0.00 0.00 3.86
4728 4805 9.823647 CTTTCTCTAATTTAGCTGTTATCTGGA 57.176 33.333 0.00 0.00 0.00 3.86
4731 4808 9.601217 TCTCTAATTTAGCTGTTATCTGGAAAC 57.399 33.333 0.00 0.00 0.00 2.78
4732 4809 9.383519 CTCTAATTTAGCTGTTATCTGGAAACA 57.616 33.333 0.00 0.00 35.61 2.83
4733 4810 9.733556 TCTAATTTAGCTGTTATCTGGAAACAA 57.266 29.630 0.00 0.00 42.06 2.83
4734 4811 9.994432 CTAATTTAGCTGTTATCTGGAAACAAG 57.006 33.333 0.00 0.00 42.06 3.16
4735 4812 8.635765 AATTTAGCTGTTATCTGGAAACAAGA 57.364 30.769 0.00 0.00 42.06 3.02
4736 4813 8.635765 ATTTAGCTGTTATCTGGAAACAAGAA 57.364 30.769 0.00 0.00 42.06 2.52
4737 4814 8.458573 TTTAGCTGTTATCTGGAAACAAGAAA 57.541 30.769 0.00 0.00 42.06 2.52
4738 4815 6.959639 AGCTGTTATCTGGAAACAAGAAAA 57.040 33.333 0.00 0.00 42.06 2.29
4739 4816 6.974965 AGCTGTTATCTGGAAACAAGAAAAG 58.025 36.000 0.00 0.00 42.06 2.27
4740 4817 6.772716 AGCTGTTATCTGGAAACAAGAAAAGA 59.227 34.615 0.00 0.00 42.06 2.52
4741 4818 7.285401 AGCTGTTATCTGGAAACAAGAAAAGAA 59.715 33.333 0.00 0.00 42.06 2.52
4742 4819 7.920682 GCTGTTATCTGGAAACAAGAAAAGAAA 59.079 33.333 0.00 0.00 42.06 2.52
4743 4820 9.455847 CTGTTATCTGGAAACAAGAAAAGAAAG 57.544 33.333 0.00 0.00 42.06 2.62
4744 4821 8.966868 TGTTATCTGGAAACAAGAAAAGAAAGT 58.033 29.630 0.00 0.00 42.06 2.66
4745 4822 9.803315 GTTATCTGGAAACAAGAAAAGAAAGTT 57.197 29.630 0.00 0.00 42.06 2.66
4746 4823 9.801873 TTATCTGGAAACAAGAAAAGAAAGTTG 57.198 29.630 0.00 0.00 42.06 3.16
4747 4824 7.461182 TCTGGAAACAAGAAAAGAAAGTTGA 57.539 32.000 0.00 0.00 42.06 3.18
4748 4825 7.891561 TCTGGAAACAAGAAAAGAAAGTTGAA 58.108 30.769 0.00 0.00 42.06 2.69
4749 4826 8.028938 TCTGGAAACAAGAAAAGAAAGTTGAAG 58.971 33.333 0.00 0.00 42.06 3.02
4750 4827 7.666623 TGGAAACAAGAAAAGAAAGTTGAAGT 58.333 30.769 0.00 0.00 37.44 3.01
4751 4828 7.598493 TGGAAACAAGAAAAGAAAGTTGAAGTG 59.402 33.333 0.00 0.00 37.44 3.16
4752 4829 7.812669 GGAAACAAGAAAAGAAAGTTGAAGTGA 59.187 33.333 0.00 0.00 0.00 3.41
4753 4830 9.358872 GAAACAAGAAAAGAAAGTTGAAGTGAT 57.641 29.630 0.00 0.00 0.00 3.06
4754 4831 9.710900 AAACAAGAAAAGAAAGTTGAAGTGATT 57.289 25.926 0.00 0.00 0.00 2.57
4756 4833 9.788960 ACAAGAAAAGAAAGTTGAAGTGATTAC 57.211 29.630 0.00 0.00 0.00 1.89
4764 4841 9.660180 AGAAAGTTGAAGTGATTACTATCTTCC 57.340 33.333 0.00 0.00 35.69 3.46
4765 4842 9.436957 GAAAGTTGAAGTGATTACTATCTTCCA 57.563 33.333 0.00 0.00 35.69 3.53
4766 4843 9.965902 AAAGTTGAAGTGATTACTATCTTCCAT 57.034 29.630 0.00 0.00 35.69 3.41
4767 4844 8.954950 AGTTGAAGTGATTACTATCTTCCATG 57.045 34.615 0.00 0.00 35.69 3.66
4768 4845 8.543774 AGTTGAAGTGATTACTATCTTCCATGT 58.456 33.333 0.00 0.00 35.69 3.21
4769 4846 9.167311 GTTGAAGTGATTACTATCTTCCATGTT 57.833 33.333 0.00 0.00 35.69 2.71
4770 4847 8.722480 TGAAGTGATTACTATCTTCCATGTTG 57.278 34.615 0.00 0.00 35.69 3.33
4771 4848 7.280876 TGAAGTGATTACTATCTTCCATGTTGC 59.719 37.037 0.00 0.00 35.69 4.17
4772 4849 6.893583 AGTGATTACTATCTTCCATGTTGCT 58.106 36.000 0.00 0.00 34.74 3.91
4773 4850 8.023021 AGTGATTACTATCTTCCATGTTGCTA 57.977 34.615 0.00 0.00 34.74 3.49
4774 4851 7.928706 AGTGATTACTATCTTCCATGTTGCTAC 59.071 37.037 0.00 0.00 34.74 3.58
4775 4852 7.171678 GTGATTACTATCTTCCATGTTGCTACC 59.828 40.741 0.00 0.00 0.00 3.18
4776 4853 6.808321 TTACTATCTTCCATGTTGCTACCT 57.192 37.500 0.00 0.00 0.00 3.08
4777 4854 5.700402 ACTATCTTCCATGTTGCTACCTT 57.300 39.130 0.00 0.00 0.00 3.50
4778 4855 5.431765 ACTATCTTCCATGTTGCTACCTTG 58.568 41.667 0.00 0.00 0.00 3.61
4779 4856 3.788227 TCTTCCATGTTGCTACCTTGT 57.212 42.857 0.00 0.00 0.00 3.16
4780 4857 3.411446 TCTTCCATGTTGCTACCTTGTG 58.589 45.455 0.00 0.00 0.00 3.33
4781 4858 3.072330 TCTTCCATGTTGCTACCTTGTGA 59.928 43.478 0.00 0.00 0.00 3.58
4782 4859 3.057969 TCCATGTTGCTACCTTGTGAG 57.942 47.619 0.00 0.00 0.00 3.51
4816 4893 8.412676 GCTTTTGCGAATTAATATCATCTTTCG 58.587 33.333 0.00 0.00 39.03 3.46
4817 4894 8.781067 TTTTGCGAATTAATATCATCTTTCGG 57.219 30.769 0.00 0.00 37.15 4.30
4818 4895 6.480524 TGCGAATTAATATCATCTTTCGGG 57.519 37.500 0.00 0.00 37.15 5.14
4819 4896 5.411361 TGCGAATTAATATCATCTTTCGGGG 59.589 40.000 0.00 0.00 37.15 5.73
4820 4897 5.411669 GCGAATTAATATCATCTTTCGGGGT 59.588 40.000 0.00 0.00 37.15 4.95
4821 4898 6.402226 GCGAATTAATATCATCTTTCGGGGTC 60.402 42.308 0.00 0.00 37.15 4.46
4822 4899 6.649141 CGAATTAATATCATCTTTCGGGGTCA 59.351 38.462 0.00 0.00 34.06 4.02
4823 4900 7.172532 CGAATTAATATCATCTTTCGGGGTCAA 59.827 37.037 0.00 0.00 34.06 3.18
4824 4901 8.760980 AATTAATATCATCTTTCGGGGTCAAA 57.239 30.769 0.00 0.00 0.00 2.69
4825 4902 7.801716 TTAATATCATCTTTCGGGGTCAAAG 57.198 36.000 0.00 0.00 32.89 2.77
4826 4903 2.489938 TCATCTTTCGGGGTCAAAGG 57.510 50.000 0.00 0.00 32.55 3.11
4827 4904 1.702957 TCATCTTTCGGGGTCAAAGGT 59.297 47.619 0.00 0.00 32.55 3.50
4828 4905 1.812571 CATCTTTCGGGGTCAAAGGTG 59.187 52.381 0.00 0.00 36.02 4.00
4829 4906 0.109723 TCTTTCGGGGTCAAAGGTGG 59.890 55.000 0.00 0.00 32.55 4.61
4830 4907 1.524008 CTTTCGGGGTCAAAGGTGGC 61.524 60.000 0.00 0.00 0.00 5.01
4831 4908 3.835790 TTCGGGGTCAAAGGTGGCG 62.836 63.158 0.00 0.00 0.00 5.69
4832 4909 4.323477 CGGGGTCAAAGGTGGCGA 62.323 66.667 0.00 0.00 0.00 5.54
4833 4910 2.114411 GGGGTCAAAGGTGGCGAA 59.886 61.111 0.00 0.00 0.00 4.70
4834 4911 1.971695 GGGGTCAAAGGTGGCGAAG 60.972 63.158 0.00 0.00 0.00 3.79
4848 4925 3.932459 CGAAGCCTGAAATGCATCC 57.068 52.632 0.00 0.00 0.00 3.51
4849 4926 1.386533 CGAAGCCTGAAATGCATCCT 58.613 50.000 0.00 0.00 0.00 3.24
4850 4927 1.065102 CGAAGCCTGAAATGCATCCTG 59.935 52.381 0.00 0.00 0.00 3.86
4851 4928 1.407979 GAAGCCTGAAATGCATCCTGG 59.592 52.381 15.91 15.91 0.00 4.45
4852 4929 1.041447 AGCCTGAAATGCATCCTGGC 61.041 55.000 27.55 27.55 37.86 4.85
4853 4930 1.041447 GCCTGAAATGCATCCTGGCT 61.041 55.000 27.54 2.27 36.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.530701 AGGTATAGAAGGCGATGGAGG 58.469 52.381 0.00 0.00 0.00 4.30
75 76 5.815740 GGGAAGTGTGTATGTGTGTAATAGG 59.184 44.000 0.00 0.00 0.00 2.57
81 82 3.391296 AGAAGGGAAGTGTGTATGTGTGT 59.609 43.478 0.00 0.00 0.00 3.72
85 86 3.193691 CGAGAGAAGGGAAGTGTGTATGT 59.806 47.826 0.00 0.00 0.00 2.29
116 118 3.706594 TCCTTGAGACAAGATATCGCCTT 59.293 43.478 12.25 0.00 0.00 4.35
197 199 8.554528 CGTTGCAAAGAAACTCTGATCATATAT 58.445 33.333 6.52 0.00 0.00 0.86
207 209 0.307760 CGCCGTTGCAAAGAAACTCT 59.692 50.000 14.32 0.00 37.32 3.24
247 249 2.884012 TGTTGTAACAACCTGCATCCTG 59.116 45.455 1.21 0.00 35.67 3.86
261 263 5.003160 AGCACACTAGCAATCATGTTGTAA 58.997 37.500 8.97 0.03 36.85 2.41
267 269 5.550232 TTGTTAGCACACTAGCAATCATG 57.450 39.130 0.00 0.00 42.52 3.07
271 273 5.241506 ACACATTTGTTAGCACACTAGCAAT 59.758 36.000 3.68 0.00 45.43 3.56
295 297 2.569853 ACATGACTACCCGTGGAATTCA 59.430 45.455 7.93 0.00 0.00 2.57
296 298 3.195661 GACATGACTACCCGTGGAATTC 58.804 50.000 0.00 0.00 0.00 2.17
297 299 2.569853 TGACATGACTACCCGTGGAATT 59.430 45.455 0.00 0.00 0.00 2.17
298 300 2.184533 TGACATGACTACCCGTGGAAT 58.815 47.619 0.00 0.00 0.00 3.01
635 641 3.876589 AATTGGTGTCGCGGTCGCT 62.877 57.895 6.13 0.00 39.32 4.93
735 741 5.010415 AGCAAGGACTGATTTCAAAAAGGAG 59.990 40.000 0.00 0.00 0.00 3.69
758 764 6.432472 AGCCTATCAGAAAAGAAAGGAACAAG 59.568 38.462 0.00 0.00 0.00 3.16
876 882 5.453567 AACCAACAATCTAAGGCTTGTTC 57.546 39.130 10.69 0.00 42.16 3.18
897 903 5.885449 ATTTCCTTGTTTCCATGGTGAAA 57.115 34.783 12.58 2.76 37.23 2.69
919 925 5.441718 AGAATAAGTCAGGCAGATGGAAA 57.558 39.130 0.00 0.00 0.00 3.13
942 948 8.712228 AATCTAATTCCTGAAAAAGTGTTCCT 57.288 30.769 0.00 0.00 0.00 3.36
1001 1009 2.429250 CCAGCATCAAATGAATGGCTCA 59.571 45.455 5.09 0.00 38.81 4.26
1088 1096 4.280174 GCCCATTCATCTACTGCATCAAAT 59.720 41.667 0.00 0.00 0.00 2.32
1089 1097 3.633525 GCCCATTCATCTACTGCATCAAA 59.366 43.478 0.00 0.00 0.00 2.69
1090 1098 3.117776 AGCCCATTCATCTACTGCATCAA 60.118 43.478 0.00 0.00 0.00 2.57
1092 1100 2.812591 CAGCCCATTCATCTACTGCATC 59.187 50.000 0.00 0.00 0.00 3.91
1093 1101 2.860009 CAGCCCATTCATCTACTGCAT 58.140 47.619 0.00 0.00 0.00 3.96
1094 1102 2.336945 CAGCCCATTCATCTACTGCA 57.663 50.000 0.00 0.00 0.00 4.41
1095 1103 0.950116 GCAGCCCATTCATCTACTGC 59.050 55.000 0.00 0.00 43.09 4.40
1096 1104 2.336945 TGCAGCCCATTCATCTACTG 57.663 50.000 0.00 0.00 0.00 2.74
1097 1105 2.240667 ACTTGCAGCCCATTCATCTACT 59.759 45.455 0.00 0.00 0.00 2.57
1098 1106 2.648059 ACTTGCAGCCCATTCATCTAC 58.352 47.619 0.00 0.00 0.00 2.59
1099 1107 3.282021 GAACTTGCAGCCCATTCATCTA 58.718 45.455 0.00 0.00 0.00 1.98
1100 1108 2.097825 GAACTTGCAGCCCATTCATCT 58.902 47.619 0.00 0.00 0.00 2.90
1101 1109 1.135721 GGAACTTGCAGCCCATTCATC 59.864 52.381 0.00 0.00 0.00 2.92
1102 1110 1.188863 GGAACTTGCAGCCCATTCAT 58.811 50.000 0.00 0.00 0.00 2.57
1103 1111 0.178967 TGGAACTTGCAGCCCATTCA 60.179 50.000 0.00 0.00 0.00 2.57
1104 1112 1.135721 GATGGAACTTGCAGCCCATTC 59.864 52.381 10.98 0.00 39.33 2.67
1105 1113 1.188863 GATGGAACTTGCAGCCCATT 58.811 50.000 10.98 0.00 39.33 3.16
1106 1114 0.040058 TGATGGAACTTGCAGCCCAT 59.960 50.000 9.89 9.89 41.70 4.00
1107 1115 0.178967 TTGATGGAACTTGCAGCCCA 60.179 50.000 0.00 0.00 0.00 5.36
1108 1116 1.135721 GATTGATGGAACTTGCAGCCC 59.864 52.381 0.00 0.00 0.00 5.19
1109 1117 1.135721 GGATTGATGGAACTTGCAGCC 59.864 52.381 0.00 0.00 0.00 4.85
1152 1160 3.447229 GGGAGACTGAAGAAGGAGAAGAG 59.553 52.174 0.00 0.00 0.00 2.85
1193 1201 4.678309 CGATGAAGAGTTCCTACCCTTCAC 60.678 50.000 4.68 0.47 45.01 3.18
1207 1215 1.534175 GCACCGTACCTCGATGAAGAG 60.534 57.143 0.00 0.00 42.86 2.85
1286 1295 3.955429 CGGTGACTTTGCTTCATCG 57.045 52.632 0.00 0.00 40.94 3.84
1320 1329 8.086522 GGAATGGGTTGATCTTATCATGAATTG 58.913 37.037 0.00 0.00 39.39 2.32
1335 1344 1.426983 TCACACATGGGAATGGGTTGA 59.573 47.619 0.00 0.00 35.71 3.18
1425 1434 5.870978 ACACAAAATTAGCATCTTGGATTGC 59.129 36.000 0.00 0.00 39.17 3.56
1434 1443 4.622740 GCACCTTCACACAAAATTAGCATC 59.377 41.667 0.00 0.00 0.00 3.91
1573 1582 6.016777 CAGGAGAACTGTAGTTGCTGAATTTT 60.017 38.462 1.35 0.00 42.42 1.82
1599 1608 3.802866 TCAATATGCGTGCTGGTTGATA 58.197 40.909 0.00 0.00 0.00 2.15
1648 1657 2.412870 CGTGAAGTGTGCTGGTTGATA 58.587 47.619 0.00 0.00 0.00 2.15
1649 1658 1.229428 CGTGAAGTGTGCTGGTTGAT 58.771 50.000 0.00 0.00 0.00 2.57
1650 1659 1.436195 GCGTGAAGTGTGCTGGTTGA 61.436 55.000 0.00 0.00 0.00 3.18
1651 1660 1.009675 GCGTGAAGTGTGCTGGTTG 60.010 57.895 0.00 0.00 0.00 3.77
1653 1662 2.505982 AGCGTGAAGTGTGCTGGT 59.494 55.556 0.00 0.00 37.62 4.00
1679 1701 7.433708 TTGATCGTCACACAGAAATACAAAT 57.566 32.000 0.00 0.00 0.00 2.32
1725 1748 3.487576 TGTGAAACACAGACCACCC 57.512 52.632 0.25 0.00 45.67 4.61
2117 2142 7.978982 TGAAACATAGCTTTCAGAAGAATAGC 58.021 34.615 0.00 0.00 35.63 2.97
2374 2399 4.392138 GCACTTGAAACTGATGGTACTACC 59.608 45.833 0.00 0.00 39.22 3.18
2647 2672 5.117406 GGAGGACCCATTCTTATGAAACT 57.883 43.478 0.00 0.00 35.63 2.66
2720 2745 1.303888 CTCTGTGGGGCAAGTGCAT 60.304 57.895 5.52 0.00 44.36 3.96
3736 3764 1.758783 CGATCTCGACGATGAATGCA 58.241 50.000 0.00 0.00 43.02 3.96
3802 3830 3.197790 CCGACCTTCATGCTGGCG 61.198 66.667 4.09 8.09 0.00 5.69
3855 3883 2.349249 CGCAAATCGATGGCTGATTCTC 60.349 50.000 17.17 0.00 41.67 2.87
3862 3890 1.308069 ACTTGCGCAAATCGATGGCT 61.308 50.000 25.01 0.00 41.67 4.75
3885 3913 1.431036 GCGATGAGCTTCTTTGGCC 59.569 57.895 0.00 0.00 44.04 5.36
3946 3978 3.617538 GCATCAGTACGCGCCGAC 61.618 66.667 5.73 1.33 0.00 4.79
4054 4086 5.273208 AGCTGAGTGATTTAGTCTAGGGAA 58.727 41.667 0.00 0.00 0.00 3.97
4055 4087 4.873010 AGCTGAGTGATTTAGTCTAGGGA 58.127 43.478 0.00 0.00 0.00 4.20
4056 4088 4.892934 AGAGCTGAGTGATTTAGTCTAGGG 59.107 45.833 0.00 0.00 0.00 3.53
4057 4089 7.575414 TTAGAGCTGAGTGATTTAGTCTAGG 57.425 40.000 0.00 0.00 0.00 3.02
4058 4090 9.066892 AGATTAGAGCTGAGTGATTTAGTCTAG 57.933 37.037 0.00 0.00 0.00 2.43
4191 4227 5.170748 GTTGACAAATGGACAATTGATCCC 58.829 41.667 13.59 10.48 35.12 3.85
4201 4238 2.489971 TCCTGTCGTTGACAAATGGAC 58.510 47.619 0.89 7.85 42.26 4.02
4242 4279 8.966868 TCAAACCATCTTCTAAAAGTCAGTTTT 58.033 29.630 0.00 0.00 41.45 2.43
4270 4322 8.318412 TCACAGAATTCAATAAGGCTAGTGTAA 58.682 33.333 8.44 0.00 0.00 2.41
4271 4323 7.847096 TCACAGAATTCAATAAGGCTAGTGTA 58.153 34.615 8.44 0.00 0.00 2.90
4272 4324 6.711277 TCACAGAATTCAATAAGGCTAGTGT 58.289 36.000 8.44 0.00 0.00 3.55
4273 4325 7.615582 TTCACAGAATTCAATAAGGCTAGTG 57.384 36.000 8.44 0.00 0.00 2.74
4300 4377 3.634448 AGGGATATCTCTGTCTTCACACG 59.366 47.826 3.68 0.00 0.00 4.49
4303 4380 5.814705 CACAAAGGGATATCTCTGTCTTCAC 59.185 44.000 5.69 0.00 0.00 3.18
4314 4391 3.152341 CCAGCATCCACAAAGGGATATC 58.848 50.000 0.00 0.00 45.91 1.63
4349 4426 4.903045 TCTATTTTGGAACGGAGGAAGT 57.097 40.909 0.00 0.00 0.00 3.01
4350 4427 5.294552 GTCATCTATTTTGGAACGGAGGAAG 59.705 44.000 0.00 0.00 0.00 3.46
4351 4428 5.045869 AGTCATCTATTTTGGAACGGAGGAA 60.046 40.000 0.00 0.00 0.00 3.36
4352 4429 4.469945 AGTCATCTATTTTGGAACGGAGGA 59.530 41.667 0.00 0.00 0.00 3.71
4353 4430 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
4354 4431 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
4355 4432 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4356 4433 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
4357 4434 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
4358 4435 8.567948 TCAAAGTTGAGTCATCTATTTTGGAAC 58.432 33.333 4.14 0.00 37.96 3.62
4359 4436 8.567948 GTCAAAGTTGAGTCATCTATTTTGGAA 58.432 33.333 4.14 0.00 37.96 3.53
4360 4437 7.939039 AGTCAAAGTTGAGTCATCTATTTTGGA 59.061 33.333 4.14 0.00 37.96 3.53
4361 4438 8.103948 AGTCAAAGTTGAGTCATCTATTTTGG 57.896 34.615 4.14 0.00 37.96 3.28
4382 4459 9.745880 CTCAAGACTTTGTACTAACTTTAGTCA 57.254 33.333 4.90 2.04 37.78 3.41
4383 4460 9.747293 ACTCAAGACTTTGTACTAACTTTAGTC 57.253 33.333 4.90 0.00 37.78 2.59
4400 4477 9.706691 TCGTTTCAAAATAGATTACTCAAGACT 57.293 29.630 0.00 0.00 0.00 3.24
4403 4480 9.760660 CCTTCGTTTCAAAATAGATTACTCAAG 57.239 33.333 0.00 0.00 0.00 3.02
4404 4481 8.726988 CCCTTCGTTTCAAAATAGATTACTCAA 58.273 33.333 0.00 0.00 0.00 3.02
4405 4482 8.098286 TCCCTTCGTTTCAAAATAGATTACTCA 58.902 33.333 0.00 0.00 0.00 3.41
4406 4483 8.488651 TCCCTTCGTTTCAAAATAGATTACTC 57.511 34.615 0.00 0.00 0.00 2.59
4407 4484 8.101419 ACTCCCTTCGTTTCAAAATAGATTACT 58.899 33.333 0.00 0.00 0.00 2.24
4408 4485 8.265165 ACTCCCTTCGTTTCAAAATAGATTAC 57.735 34.615 0.00 0.00 0.00 1.89
4409 4486 9.595823 CTACTCCCTTCGTTTCAAAATAGATTA 57.404 33.333 0.00 0.00 0.00 1.75
4410 4487 8.101419 ACTACTCCCTTCGTTTCAAAATAGATT 58.899 33.333 0.00 0.00 0.00 2.40
4411 4488 7.621796 ACTACTCCCTTCGTTTCAAAATAGAT 58.378 34.615 0.00 0.00 0.00 1.98
4412 4489 7.001099 ACTACTCCCTTCGTTTCAAAATAGA 57.999 36.000 0.00 0.00 0.00 1.98
4413 4490 7.668525 AACTACTCCCTTCGTTTCAAAATAG 57.331 36.000 0.00 0.00 0.00 1.73
4414 4491 8.370182 AGTAACTACTCCCTTCGTTTCAAAATA 58.630 33.333 0.00 0.00 0.00 1.40
4415 4492 7.222161 AGTAACTACTCCCTTCGTTTCAAAAT 58.778 34.615 0.00 0.00 0.00 1.82
4416 4493 6.585416 AGTAACTACTCCCTTCGTTTCAAAA 58.415 36.000 0.00 0.00 0.00 2.44
4417 4494 6.165700 AGTAACTACTCCCTTCGTTTCAAA 57.834 37.500 0.00 0.00 0.00 2.69
4418 4495 5.796424 AGTAACTACTCCCTTCGTTTCAA 57.204 39.130 0.00 0.00 0.00 2.69
4419 4496 5.796424 AAGTAACTACTCCCTTCGTTTCA 57.204 39.130 0.00 0.00 34.99 2.69
4420 4497 7.653311 TGTAAAAGTAACTACTCCCTTCGTTTC 59.347 37.037 0.00 0.00 34.99 2.78
4421 4498 7.500141 TGTAAAAGTAACTACTCCCTTCGTTT 58.500 34.615 0.00 0.00 34.99 3.60
4422 4499 7.054491 TGTAAAAGTAACTACTCCCTTCGTT 57.946 36.000 0.00 0.00 34.99 3.85
4423 4500 6.655078 TGTAAAAGTAACTACTCCCTTCGT 57.345 37.500 0.00 0.00 34.99 3.85
4424 4501 7.951530 TTTGTAAAAGTAACTACTCCCTTCG 57.048 36.000 0.00 0.00 34.99 3.79
4426 4503 9.074576 CCATTTTGTAAAAGTAACTACTCCCTT 57.925 33.333 0.00 0.00 34.99 3.95
4427 4504 8.222637 ACCATTTTGTAAAAGTAACTACTCCCT 58.777 33.333 0.00 0.00 34.99 4.20
4428 4505 8.400184 ACCATTTTGTAAAAGTAACTACTCCC 57.600 34.615 0.00 0.00 34.99 4.30
4474 4551 9.607988 TTCAAGTAGTACAAACTTTGAGATCAA 57.392 29.630 8.55 0.00 35.14 2.57
4568 4645 7.328982 GCACAAGATAGATCATCTACATGTCTG 59.671 40.741 0.00 0.00 43.56 3.51
4573 4650 6.931790 AGGCACAAGATAGATCATCTACAT 57.068 37.500 0.00 0.00 43.56 2.29
4594 4671 4.962155 AGACTCAGGTTCACTACAAAAGG 58.038 43.478 0.00 0.00 0.00 3.11
4640 4717 1.862201 CAGGTGTGCTTTGCAACAATG 59.138 47.619 0.00 0.00 41.47 2.82
4641 4718 1.202557 CCAGGTGTGCTTTGCAACAAT 60.203 47.619 0.00 0.00 41.47 2.71
4642 4719 0.175302 CCAGGTGTGCTTTGCAACAA 59.825 50.000 0.00 0.00 41.47 2.83
4643 4720 1.674764 CCCAGGTGTGCTTTGCAACA 61.675 55.000 0.00 0.00 41.47 3.33
4644 4721 1.067916 CCCAGGTGTGCTTTGCAAC 59.932 57.895 0.00 0.00 41.47 4.17
4645 4722 0.685785 TTCCCAGGTGTGCTTTGCAA 60.686 50.000 0.00 0.00 41.47 4.08
4646 4723 1.076412 TTCCCAGGTGTGCTTTGCA 60.076 52.632 0.00 0.00 35.60 4.08
4647 4724 1.363807 GTTCCCAGGTGTGCTTTGC 59.636 57.895 0.00 0.00 0.00 3.68
4648 4725 0.468029 AGGTTCCCAGGTGTGCTTTG 60.468 55.000 0.00 0.00 0.00 2.77
4649 4726 1.145571 TAGGTTCCCAGGTGTGCTTT 58.854 50.000 0.00 0.00 0.00 3.51
4650 4727 1.372501 ATAGGTTCCCAGGTGTGCTT 58.627 50.000 0.00 0.00 0.00 3.91
4651 4728 1.004745 CAATAGGTTCCCAGGTGTGCT 59.995 52.381 0.00 0.00 0.00 4.40
4652 4729 1.463674 CAATAGGTTCCCAGGTGTGC 58.536 55.000 0.00 0.00 0.00 4.57
4653 4730 1.004745 AGCAATAGGTTCCCAGGTGTG 59.995 52.381 0.00 0.00 0.00 3.82
4654 4731 1.282157 GAGCAATAGGTTCCCAGGTGT 59.718 52.381 0.00 0.00 0.00 4.16
4655 4732 1.281867 TGAGCAATAGGTTCCCAGGTG 59.718 52.381 0.00 0.00 0.00 4.00
4656 4733 1.668826 TGAGCAATAGGTTCCCAGGT 58.331 50.000 0.00 0.00 0.00 4.00
4657 4734 4.437682 TTATGAGCAATAGGTTCCCAGG 57.562 45.455 0.00 0.00 0.00 4.45
4658 4735 5.440610 AGTTTATGAGCAATAGGTTCCCAG 58.559 41.667 0.00 0.00 0.00 4.45
4659 4736 5.450818 AGTTTATGAGCAATAGGTTCCCA 57.549 39.130 0.00 0.00 0.00 4.37
4660 4737 5.067805 CCAAGTTTATGAGCAATAGGTTCCC 59.932 44.000 0.00 0.00 0.00 3.97
4661 4738 5.652452 ACCAAGTTTATGAGCAATAGGTTCC 59.348 40.000 0.00 0.00 0.00 3.62
4662 4739 6.759497 ACCAAGTTTATGAGCAATAGGTTC 57.241 37.500 0.00 0.00 0.00 3.62
4663 4740 8.686334 CAATACCAAGTTTATGAGCAATAGGTT 58.314 33.333 0.00 0.00 0.00 3.50
4664 4741 7.834181 ACAATACCAAGTTTATGAGCAATAGGT 59.166 33.333 0.00 0.00 0.00 3.08
4665 4742 8.225603 ACAATACCAAGTTTATGAGCAATAGG 57.774 34.615 0.00 0.00 0.00 2.57
4666 4743 9.507280 CAACAATACCAAGTTTATGAGCAATAG 57.493 33.333 0.00 0.00 0.00 1.73
4667 4744 9.019656 ACAACAATACCAAGTTTATGAGCAATA 57.980 29.630 0.00 0.00 0.00 1.90
4668 4745 7.895759 ACAACAATACCAAGTTTATGAGCAAT 58.104 30.769 0.00 0.00 0.00 3.56
4669 4746 7.283625 ACAACAATACCAAGTTTATGAGCAA 57.716 32.000 0.00 0.00 0.00 3.91
4670 4747 6.892658 ACAACAATACCAAGTTTATGAGCA 57.107 33.333 0.00 0.00 0.00 4.26
4671 4748 7.248437 GGTACAACAATACCAAGTTTATGAGC 58.752 38.462 0.00 0.00 43.69 4.26
4672 4749 7.610305 AGGGTACAACAATACCAAGTTTATGAG 59.390 37.037 4.45 0.00 45.72 2.90
4673 4750 7.392113 CAGGGTACAACAATACCAAGTTTATGA 59.608 37.037 4.45 0.00 45.72 2.15
4674 4751 7.175990 ACAGGGTACAACAATACCAAGTTTATG 59.824 37.037 4.45 0.00 45.72 1.90
4675 4752 7.235804 ACAGGGTACAACAATACCAAGTTTAT 58.764 34.615 4.45 0.00 45.72 1.40
4676 4753 6.603224 ACAGGGTACAACAATACCAAGTTTA 58.397 36.000 4.45 0.00 45.72 2.01
4677 4754 5.451354 ACAGGGTACAACAATACCAAGTTT 58.549 37.500 4.45 0.00 45.72 2.66
4678 4755 5.056553 ACAGGGTACAACAATACCAAGTT 57.943 39.130 4.45 0.00 45.72 2.66
4679 4756 4.717279 ACAGGGTACAACAATACCAAGT 57.283 40.909 4.45 0.00 45.72 3.16
4680 4757 5.313712 AGAACAGGGTACAACAATACCAAG 58.686 41.667 4.45 0.00 45.72 3.61
4681 4758 5.313280 AGAACAGGGTACAACAATACCAA 57.687 39.130 4.45 0.00 45.72 3.67
4682 4759 4.986054 AGAACAGGGTACAACAATACCA 57.014 40.909 4.45 0.00 45.72 3.25
4683 4760 6.002082 AGAAAGAACAGGGTACAACAATACC 58.998 40.000 0.00 0.00 43.53 2.73
4684 4761 6.935208 AGAGAAAGAACAGGGTACAACAATAC 59.065 38.462 0.00 0.00 0.00 1.89
4685 4762 7.074653 AGAGAAAGAACAGGGTACAACAATA 57.925 36.000 0.00 0.00 0.00 1.90
4686 4763 5.941788 AGAGAAAGAACAGGGTACAACAAT 58.058 37.500 0.00 0.00 0.00 2.71
4687 4764 5.367945 AGAGAAAGAACAGGGTACAACAA 57.632 39.130 0.00 0.00 0.00 2.83
4688 4765 6.488769 TTAGAGAAAGAACAGGGTACAACA 57.511 37.500 0.00 0.00 0.00 3.33
4689 4766 7.981102 AATTAGAGAAAGAACAGGGTACAAC 57.019 36.000 0.00 0.00 0.00 3.32
4690 4767 9.720769 CTAAATTAGAGAAAGAACAGGGTACAA 57.279 33.333 0.00 0.00 0.00 2.41
4691 4768 7.822822 GCTAAATTAGAGAAAGAACAGGGTACA 59.177 37.037 3.88 0.00 0.00 2.90
4692 4769 8.041919 AGCTAAATTAGAGAAAGAACAGGGTAC 58.958 37.037 3.88 0.00 0.00 3.34
4693 4770 8.041323 CAGCTAAATTAGAGAAAGAACAGGGTA 58.959 37.037 3.88 0.00 0.00 3.69
4694 4771 6.881602 CAGCTAAATTAGAGAAAGAACAGGGT 59.118 38.462 3.88 0.00 0.00 4.34
4695 4772 6.881602 ACAGCTAAATTAGAGAAAGAACAGGG 59.118 38.462 3.88 0.00 0.00 4.45
4696 4773 7.913674 ACAGCTAAATTAGAGAAAGAACAGG 57.086 36.000 3.88 0.00 0.00 4.00
4701 4778 9.823647 CCAGATAACAGCTAAATTAGAGAAAGA 57.176 33.333 3.88 0.00 0.00 2.52
4702 4779 9.823647 TCCAGATAACAGCTAAATTAGAGAAAG 57.176 33.333 3.88 0.00 0.00 2.62
4705 4782 9.601217 GTTTCCAGATAACAGCTAAATTAGAGA 57.399 33.333 3.88 0.00 0.00 3.10
4706 4783 9.383519 TGTTTCCAGATAACAGCTAAATTAGAG 57.616 33.333 3.88 0.00 32.15 2.43
4707 4784 9.733556 TTGTTTCCAGATAACAGCTAAATTAGA 57.266 29.630 3.88 0.00 36.89 2.10
4708 4785 9.994432 CTTGTTTCCAGATAACAGCTAAATTAG 57.006 33.333 0.00 0.00 36.89 1.73
4709 4786 9.733556 TCTTGTTTCCAGATAACAGCTAAATTA 57.266 29.630 0.00 0.00 36.89 1.40
4710 4787 8.635765 TCTTGTTTCCAGATAACAGCTAAATT 57.364 30.769 0.00 0.00 36.89 1.82
4711 4788 8.635765 TTCTTGTTTCCAGATAACAGCTAAAT 57.364 30.769 0.00 0.00 36.89 1.40
4712 4789 8.458573 TTTCTTGTTTCCAGATAACAGCTAAA 57.541 30.769 0.00 0.00 36.89 1.85
4713 4790 8.458573 TTTTCTTGTTTCCAGATAACAGCTAA 57.541 30.769 0.00 0.00 36.89 3.09
4714 4791 7.936847 TCTTTTCTTGTTTCCAGATAACAGCTA 59.063 33.333 0.00 0.00 36.89 3.32
4715 4792 6.772716 TCTTTTCTTGTTTCCAGATAACAGCT 59.227 34.615 0.00 0.00 36.89 4.24
4716 4793 6.970484 TCTTTTCTTGTTTCCAGATAACAGC 58.030 36.000 0.00 0.00 36.89 4.40
4717 4794 9.455847 CTTTCTTTTCTTGTTTCCAGATAACAG 57.544 33.333 0.00 0.00 36.89 3.16
4718 4795 8.966868 ACTTTCTTTTCTTGTTTCCAGATAACA 58.033 29.630 0.00 0.00 33.92 2.41
4719 4796 9.803315 AACTTTCTTTTCTTGTTTCCAGATAAC 57.197 29.630 0.00 0.00 0.00 1.89
4720 4797 9.801873 CAACTTTCTTTTCTTGTTTCCAGATAA 57.198 29.630 0.00 0.00 0.00 1.75
4721 4798 9.184523 TCAACTTTCTTTTCTTGTTTCCAGATA 57.815 29.630 0.00 0.00 0.00 1.98
4722 4799 8.066612 TCAACTTTCTTTTCTTGTTTCCAGAT 57.933 30.769 0.00 0.00 0.00 2.90
4723 4800 7.461182 TCAACTTTCTTTTCTTGTTTCCAGA 57.539 32.000 0.00 0.00 0.00 3.86
4724 4801 7.814587 ACTTCAACTTTCTTTTCTTGTTTCCAG 59.185 33.333 0.00 0.00 0.00 3.86
4725 4802 7.598493 CACTTCAACTTTCTTTTCTTGTTTCCA 59.402 33.333 0.00 0.00 0.00 3.53
4726 4803 7.812669 TCACTTCAACTTTCTTTTCTTGTTTCC 59.187 33.333 0.00 0.00 0.00 3.13
4727 4804 8.742554 TCACTTCAACTTTCTTTTCTTGTTTC 57.257 30.769 0.00 0.00 0.00 2.78
4728 4805 9.710900 AATCACTTCAACTTTCTTTTCTTGTTT 57.289 25.926 0.00 0.00 0.00 2.83
4730 4807 9.788960 GTAATCACTTCAACTTTCTTTTCTTGT 57.211 29.630 0.00 0.00 0.00 3.16
4738 4815 9.660180 GGAAGATAGTAATCACTTCAACTTTCT 57.340 33.333 0.00 0.00 39.99 2.52
4739 4816 9.436957 TGGAAGATAGTAATCACTTCAACTTTC 57.563 33.333 0.00 0.00 39.99 2.62
4740 4817 9.965902 ATGGAAGATAGTAATCACTTCAACTTT 57.034 29.630 0.00 0.00 39.99 2.66
4741 4818 9.388506 CATGGAAGATAGTAATCACTTCAACTT 57.611 33.333 0.00 0.00 39.99 2.66
4742 4819 8.543774 ACATGGAAGATAGTAATCACTTCAACT 58.456 33.333 0.00 0.00 39.99 3.16
4743 4820 8.723942 ACATGGAAGATAGTAATCACTTCAAC 57.276 34.615 0.00 0.00 39.99 3.18
4744 4821 9.166173 CAACATGGAAGATAGTAATCACTTCAA 57.834 33.333 0.00 0.00 39.99 2.69
4745 4822 7.280876 GCAACATGGAAGATAGTAATCACTTCA 59.719 37.037 0.00 0.00 39.99 3.02
4746 4823 7.497249 AGCAACATGGAAGATAGTAATCACTTC 59.503 37.037 0.00 0.00 38.26 3.01
4747 4824 7.341805 AGCAACATGGAAGATAGTAATCACTT 58.658 34.615 0.00 0.00 36.14 3.16
4748 4825 6.893583 AGCAACATGGAAGATAGTAATCACT 58.106 36.000 0.00 0.00 38.91 3.41
4749 4826 7.171678 GGTAGCAACATGGAAGATAGTAATCAC 59.828 40.741 0.00 0.00 34.28 3.06
4750 4827 7.071196 AGGTAGCAACATGGAAGATAGTAATCA 59.929 37.037 0.00 0.00 34.28 2.57
4751 4828 7.445945 AGGTAGCAACATGGAAGATAGTAATC 58.554 38.462 0.00 0.00 0.00 1.75
4752 4829 7.380423 AGGTAGCAACATGGAAGATAGTAAT 57.620 36.000 0.00 0.00 0.00 1.89
4753 4830 6.808321 AGGTAGCAACATGGAAGATAGTAA 57.192 37.500 0.00 0.00 0.00 2.24
4754 4831 6.156256 ACAAGGTAGCAACATGGAAGATAGTA 59.844 38.462 0.00 0.00 0.00 1.82
4755 4832 5.045578 ACAAGGTAGCAACATGGAAGATAGT 60.046 40.000 0.00 0.00 0.00 2.12
4756 4833 5.295292 CACAAGGTAGCAACATGGAAGATAG 59.705 44.000 0.00 0.00 0.00 2.08
4757 4834 5.045942 TCACAAGGTAGCAACATGGAAGATA 60.046 40.000 0.00 0.00 0.00 1.98
4758 4835 4.012374 CACAAGGTAGCAACATGGAAGAT 58.988 43.478 0.00 0.00 0.00 2.40
4759 4836 3.072330 TCACAAGGTAGCAACATGGAAGA 59.928 43.478 0.00 0.00 0.00 2.87
4760 4837 3.411446 TCACAAGGTAGCAACATGGAAG 58.589 45.455 0.00 0.00 0.00 3.46
4761 4838 3.411446 CTCACAAGGTAGCAACATGGAA 58.589 45.455 0.00 0.00 0.00 3.53
4762 4839 2.290260 CCTCACAAGGTAGCAACATGGA 60.290 50.000 0.00 0.00 37.94 3.41
4763 4840 2.086869 CCTCACAAGGTAGCAACATGG 58.913 52.381 0.00 0.00 37.94 3.66
4764 4841 1.470098 GCCTCACAAGGTAGCAACATG 59.530 52.381 0.00 0.00 45.34 3.21
4765 4842 1.352352 AGCCTCACAAGGTAGCAACAT 59.648 47.619 0.00 0.00 45.34 2.71
4766 4843 0.764890 AGCCTCACAAGGTAGCAACA 59.235 50.000 0.00 0.00 45.34 3.33
4767 4844 1.897560 AAGCCTCACAAGGTAGCAAC 58.102 50.000 0.00 0.00 45.34 4.17
4768 4845 3.609853 CATAAGCCTCACAAGGTAGCAA 58.390 45.455 0.00 0.00 45.34 3.91
4769 4846 2.092968 CCATAAGCCTCACAAGGTAGCA 60.093 50.000 0.00 0.00 45.34 3.49
4770 4847 2.565841 CCATAAGCCTCACAAGGTAGC 58.434 52.381 0.00 0.00 45.34 3.58
4771 4848 2.171448 AGCCATAAGCCTCACAAGGTAG 59.829 50.000 0.00 0.00 45.34 3.18
4772 4849 2.196595 AGCCATAAGCCTCACAAGGTA 58.803 47.619 0.00 0.00 45.34 3.08
4773 4850 0.995024 AGCCATAAGCCTCACAAGGT 59.005 50.000 0.00 0.00 45.34 3.50
4774 4851 2.134789 AAGCCATAAGCCTCACAAGG 57.865 50.000 0.00 0.00 45.47 3.61
4775 4852 3.841643 CAAAAGCCATAAGCCTCACAAG 58.158 45.455 0.00 0.00 45.47 3.16
4776 4853 2.029110 GCAAAAGCCATAAGCCTCACAA 60.029 45.455 0.00 0.00 45.47 3.33
4777 4854 1.545582 GCAAAAGCCATAAGCCTCACA 59.454 47.619 0.00 0.00 45.47 3.58
4778 4855 1.468054 CGCAAAAGCCATAAGCCTCAC 60.468 52.381 0.00 0.00 45.47 3.51
4779 4856 0.810648 CGCAAAAGCCATAAGCCTCA 59.189 50.000 0.00 0.00 45.47 3.86
4780 4857 1.094785 TCGCAAAAGCCATAAGCCTC 58.905 50.000 0.00 0.00 45.47 4.70
4781 4858 1.544724 TTCGCAAAAGCCATAAGCCT 58.455 45.000 0.00 0.00 45.47 4.58
4782 4859 2.584492 ATTCGCAAAAGCCATAAGCC 57.416 45.000 0.00 0.00 45.47 4.35
4783 4860 7.594758 TGATATTAATTCGCAAAAGCCATAAGC 59.405 33.333 0.00 0.00 44.25 3.09
4784 4861 9.630098 ATGATATTAATTCGCAAAAGCCATAAG 57.370 29.630 0.00 0.00 0.00 1.73
4785 4862 9.624697 GATGATATTAATTCGCAAAAGCCATAA 57.375 29.630 0.00 0.00 0.00 1.90
4786 4863 9.013229 AGATGATATTAATTCGCAAAAGCCATA 57.987 29.630 0.00 0.00 0.00 2.74
4787 4864 7.889469 AGATGATATTAATTCGCAAAAGCCAT 58.111 30.769 0.00 0.00 0.00 4.40
4788 4865 7.275888 AGATGATATTAATTCGCAAAAGCCA 57.724 32.000 0.00 0.00 0.00 4.75
4789 4866 8.579682 AAAGATGATATTAATTCGCAAAAGCC 57.420 30.769 0.00 0.00 0.00 4.35
4790 4867 8.412676 CGAAAGATGATATTAATTCGCAAAAGC 58.587 33.333 0.00 0.00 34.17 3.51
4791 4868 8.895845 CCGAAAGATGATATTAATTCGCAAAAG 58.104 33.333 0.00 0.00 38.55 2.27
4792 4869 7.860373 CCCGAAAGATGATATTAATTCGCAAAA 59.140 33.333 0.00 0.00 38.55 2.44
4793 4870 7.359595 CCCGAAAGATGATATTAATTCGCAAA 58.640 34.615 0.00 0.00 38.55 3.68
4794 4871 6.072728 CCCCGAAAGATGATATTAATTCGCAA 60.073 38.462 0.00 0.00 38.55 4.85
4795 4872 5.411361 CCCCGAAAGATGATATTAATTCGCA 59.589 40.000 0.00 0.00 38.55 5.10
4796 4873 5.411669 ACCCCGAAAGATGATATTAATTCGC 59.588 40.000 0.00 0.00 38.55 4.70
4797 4874 6.649141 TGACCCCGAAAGATGATATTAATTCG 59.351 38.462 0.00 0.00 39.32 3.34
4798 4875 7.979444 TGACCCCGAAAGATGATATTAATTC 57.021 36.000 0.00 0.00 0.00 2.17
4799 4876 8.760980 TTTGACCCCGAAAGATGATATTAATT 57.239 30.769 0.00 0.00 0.00 1.40
4800 4877 7.448469 CCTTTGACCCCGAAAGATGATATTAAT 59.552 37.037 0.00 0.00 33.01 1.40
4801 4878 6.770785 CCTTTGACCCCGAAAGATGATATTAA 59.229 38.462 0.00 0.00 33.01 1.40
4802 4879 6.126594 ACCTTTGACCCCGAAAGATGATATTA 60.127 38.462 0.00 0.00 33.01 0.98
4803 4880 5.133221 CCTTTGACCCCGAAAGATGATATT 58.867 41.667 0.00 0.00 33.01 1.28
4804 4881 4.166144 ACCTTTGACCCCGAAAGATGATAT 59.834 41.667 0.00 0.00 33.01 1.63
4805 4882 3.521937 ACCTTTGACCCCGAAAGATGATA 59.478 43.478 0.00 0.00 33.01 2.15
4806 4883 2.308866 ACCTTTGACCCCGAAAGATGAT 59.691 45.455 0.00 0.00 33.01 2.45
4807 4884 1.702957 ACCTTTGACCCCGAAAGATGA 59.297 47.619 0.00 0.00 33.01 2.92
4808 4885 1.812571 CACCTTTGACCCCGAAAGATG 59.187 52.381 0.00 0.00 33.01 2.90
4809 4886 1.271926 CCACCTTTGACCCCGAAAGAT 60.272 52.381 0.00 0.00 33.01 2.40
4810 4887 0.109723 CCACCTTTGACCCCGAAAGA 59.890 55.000 0.00 0.00 33.01 2.52
4811 4888 1.524008 GCCACCTTTGACCCCGAAAG 61.524 60.000 0.00 0.00 0.00 2.62
4812 4889 1.529713 GCCACCTTTGACCCCGAAA 60.530 57.895 0.00 0.00 0.00 3.46
4813 4890 2.114411 GCCACCTTTGACCCCGAA 59.886 61.111 0.00 0.00 0.00 4.30
4814 4891 4.323477 CGCCACCTTTGACCCCGA 62.323 66.667 0.00 0.00 0.00 5.14
4815 4892 3.835790 TTCGCCACCTTTGACCCCG 62.836 63.158 0.00 0.00 0.00 5.73
4816 4893 1.971695 CTTCGCCACCTTTGACCCC 60.972 63.158 0.00 0.00 0.00 4.95
4817 4894 2.626780 GCTTCGCCACCTTTGACCC 61.627 63.158 0.00 0.00 0.00 4.46
4818 4895 2.954611 GCTTCGCCACCTTTGACC 59.045 61.111 0.00 0.00 0.00 4.02
4829 4906 0.248784 GGATGCATTTCAGGCTTCGC 60.249 55.000 0.00 0.00 36.58 4.70
4830 4907 1.065102 CAGGATGCATTTCAGGCTTCG 59.935 52.381 0.00 0.00 36.58 3.79
4831 4908 1.407979 CCAGGATGCATTTCAGGCTTC 59.592 52.381 0.00 0.00 35.40 3.86
4832 4909 1.481871 CCAGGATGCATTTCAGGCTT 58.518 50.000 0.00 0.00 31.97 4.35
4833 4910 1.041447 GCCAGGATGCATTTCAGGCT 61.041 55.000 21.61 0.00 36.18 4.58
4834 4911 1.041447 AGCCAGGATGCATTTCAGGC 61.041 55.000 21.47 21.47 38.13 4.85
4835 4912 3.202548 AGCCAGGATGCATTTCAGG 57.797 52.632 0.00 4.39 31.97 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.