Multiple sequence alignment - TraesCS4B01G128300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G128300 | chr4B | 100.000 | 2679 | 0 | 0 | 1 | 2679 | 167943173 | 167940495 | 0.000000e+00 | 4948 |
1 | TraesCS4B01G128300 | chr4A | 88.772 | 1906 | 94 | 36 | 3 | 1830 | 467540987 | 467539124 | 0.000000e+00 | 2224 |
2 | TraesCS4B01G128300 | chr4A | 96.795 | 624 | 14 | 2 | 2056 | 2679 | 467539053 | 467538436 | 0.000000e+00 | 1037 |
3 | TraesCS4B01G128300 | chr4D | 93.456 | 978 | 44 | 7 | 1 | 969 | 108850740 | 108851706 | 0.000000e+00 | 1434 |
4 | TraesCS4B01G128300 | chr4D | 98.237 | 624 | 11 | 0 | 2056 | 2679 | 108852665 | 108853288 | 0.000000e+00 | 1092 |
5 | TraesCS4B01G128300 | chr4D | 89.394 | 726 | 32 | 14 | 967 | 1656 | 108851734 | 108852450 | 0.000000e+00 | 872 |
6 | TraesCS4B01G128300 | chr4D | 94.009 | 217 | 8 | 2 | 1712 | 1928 | 108852451 | 108852662 | 9.250000e-85 | 324 |
7 | TraesCS4B01G128300 | chrUn | 100.000 | 129 | 0 | 0 | 1929 | 2057 | 396963000 | 396963128 | 3.450000e-59 | 239 |
8 | TraesCS4B01G128300 | chr3A | 97.794 | 136 | 2 | 1 | 1930 | 2065 | 159530328 | 159530462 | 1.600000e-57 | 233 |
9 | TraesCS4B01G128300 | chr3A | 89.474 | 171 | 9 | 8 | 1897 | 2061 | 686615272 | 686615439 | 9.720000e-50 | 207 |
10 | TraesCS4B01G128300 | chr6D | 97.727 | 132 | 3 | 0 | 1930 | 2061 | 160470645 | 160470776 | 7.460000e-56 | 228 |
11 | TraesCS4B01G128300 | chr6B | 97.037 | 135 | 4 | 0 | 1924 | 2058 | 542584875 | 542584741 | 7.460000e-56 | 228 |
12 | TraesCS4B01G128300 | chr6B | 92.105 | 152 | 10 | 2 | 1931 | 2081 | 220575562 | 220575412 | 2.090000e-51 | 213 |
13 | TraesCS4B01G128300 | chr3B | 97.744 | 133 | 2 | 1 | 1926 | 2057 | 236361941 | 236362073 | 7.460000e-56 | 228 |
14 | TraesCS4B01G128300 | chr2D | 92.903 | 155 | 9 | 2 | 1915 | 2067 | 62390566 | 62390412 | 9.650000e-55 | 224 |
15 | TraesCS4B01G128300 | chr2B | 95.588 | 136 | 6 | 0 | 1932 | 2067 | 97944880 | 97944745 | 4.490000e-53 | 219 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G128300 | chr4B | 167940495 | 167943173 | 2678 | True | 4948.0 | 4948 | 100.0000 | 1 | 2679 | 1 | chr4B.!!$R1 | 2678 |
1 | TraesCS4B01G128300 | chr4A | 467538436 | 467540987 | 2551 | True | 1630.5 | 2224 | 92.7835 | 3 | 2679 | 2 | chr4A.!!$R1 | 2676 |
2 | TraesCS4B01G128300 | chr4D | 108850740 | 108853288 | 2548 | False | 930.5 | 1434 | 93.7740 | 1 | 2679 | 4 | chr4D.!!$F1 | 2678 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
932 | 964 | 0.459585 | CCATGTTCCCACGTACTCCG | 60.46 | 60.0 | 0.0 | 0.0 | 44.03 | 4.63 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2035 | 2152 | 1.004394 | ACTCCCTCCGTCCCAAAATTC | 59.996 | 52.381 | 0.0 | 0.0 | 0.0 | 2.17 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
63 | 64 | 6.252599 | TCAGATCACTGCCATTTTATAGGT | 57.747 | 37.500 | 0.00 | 0.00 | 43.17 | 3.08 |
67 | 68 | 7.386299 | CAGATCACTGCCATTTTATAGGTACTC | 59.614 | 40.741 | 0.00 | 0.00 | 37.30 | 2.59 |
73 | 74 | 6.068010 | TGCCATTTTATAGGTACTCCATTGG | 58.932 | 40.000 | 0.00 | 0.00 | 41.75 | 3.16 |
75 | 76 | 5.476945 | CCATTTTATAGGTACTCCATTGGGC | 59.523 | 44.000 | 2.09 | 0.00 | 41.75 | 5.36 |
76 | 77 | 4.345859 | TTTATAGGTACTCCATTGGGCG | 57.654 | 45.455 | 2.09 | 0.00 | 41.75 | 6.13 |
117 | 127 | 9.398170 | CACATTTTCAATTAACTGGTAGTTCAG | 57.602 | 33.333 | 0.00 | 0.00 | 39.51 | 3.02 |
188 | 198 | 6.437928 | TGAATCAACTTTCCAAACTTGATCG | 58.562 | 36.000 | 7.13 | 0.00 | 33.35 | 3.69 |
345 | 363 | 6.966632 | TCCGTGTATGATACGTTTGTAACTAC | 59.033 | 38.462 | 0.00 | 0.00 | 39.76 | 2.73 |
378 | 396 | 1.734137 | CCCTCCACGATCTACCACG | 59.266 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
391 | 409 | 7.012138 | CACGATCTACCACGCCTATACTTATAT | 59.988 | 40.741 | 0.00 | 0.00 | 0.00 | 0.86 |
392 | 410 | 8.206867 | ACGATCTACCACGCCTATACTTATATA | 58.793 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
393 | 411 | 9.049523 | CGATCTACCACGCCTATACTTATATAA | 57.950 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
538 | 557 | 3.416156 | ACCAGTCAAAAAGATCAGCTCC | 58.584 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
728 | 754 | 1.361668 | CGGGGCGCTGCACATATATC | 61.362 | 60.000 | 7.64 | 0.00 | 30.93 | 1.63 |
736 | 762 | 4.742167 | GCGCTGCACATATATCCTATGTAG | 59.258 | 45.833 | 0.00 | 0.00 | 36.49 | 2.74 |
744 | 770 | 7.041303 | GCACATATATCCTATGTAGCGCTAGTA | 60.041 | 40.741 | 19.48 | 12.87 | 36.49 | 1.82 |
858 | 890 | 1.043816 | CCCATATGCTCCGTGACTCT | 58.956 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
871 | 903 | 3.070018 | CGTGACTCTCTTTTGCTCCATT | 58.930 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
886 | 918 | 4.280174 | TGCTCCATTCCCGACTAGTATAAC | 59.720 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
887 | 919 | 4.523558 | GCTCCATTCCCGACTAGTATAACT | 59.476 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
888 | 920 | 5.010820 | GCTCCATTCCCGACTAGTATAACTT | 59.989 | 44.000 | 0.00 | 0.00 | 0.00 | 2.66 |
889 | 921 | 6.208204 | GCTCCATTCCCGACTAGTATAACTTA | 59.792 | 42.308 | 0.00 | 0.00 | 0.00 | 2.24 |
890 | 922 | 7.255730 | GCTCCATTCCCGACTAGTATAACTTAA | 60.256 | 40.741 | 0.00 | 0.00 | 0.00 | 1.85 |
894 | 926 | 8.627403 | CATTCCCGACTAGTATAACTTAAGACA | 58.373 | 37.037 | 10.09 | 0.00 | 0.00 | 3.41 |
932 | 964 | 0.459585 | CCATGTTCCCACGTACTCCG | 60.460 | 60.000 | 0.00 | 0.00 | 44.03 | 4.63 |
933 | 965 | 1.082117 | CATGTTCCCACGTACTCCGC | 61.082 | 60.000 | 0.00 | 0.00 | 41.42 | 5.54 |
1068 | 1141 | 2.083774 | GGTTCGATCAAGTGCCATGAA | 58.916 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
1138 | 1228 | 1.834378 | CTGCCTCCTCGCCTCCATA | 60.834 | 63.158 | 0.00 | 0.00 | 0.00 | 2.74 |
1319 | 1412 | 0.391597 | GGAGACCAACGAGTTCCACA | 59.608 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1329 | 1422 | 0.036388 | GAGTTCCACATCAAGGGCGA | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
1411 | 1504 | 0.681243 | AATTTCCCAAGAGCGGCTCC | 60.681 | 55.000 | 25.49 | 8.71 | 0.00 | 4.70 |
1423 | 1516 | 1.000274 | AGCGGCTCCAACAAAAATCAC | 60.000 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
1431 | 1524 | 6.705825 | GGCTCCAACAAAAATCACAATTAGTT | 59.294 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
1469 | 1580 | 4.734398 | TCCTTCTCTCTTTGATCAGCTC | 57.266 | 45.455 | 0.00 | 0.00 | 0.00 | 4.09 |
1662 | 1773 | 7.598189 | GATAGATCATCTGTCCATGTCAATG | 57.402 | 40.000 | 0.00 | 0.00 | 29.60 | 2.82 |
1663 | 1774 | 5.625568 | AGATCATCTGTCCATGTCAATGA | 57.374 | 39.130 | 0.00 | 4.35 | 35.67 | 2.57 |
1665 | 1776 | 6.602278 | AGATCATCTGTCCATGTCAATGAAT | 58.398 | 36.000 | 0.00 | 0.00 | 35.67 | 2.57 |
1666 | 1777 | 7.742767 | AGATCATCTGTCCATGTCAATGAATA | 58.257 | 34.615 | 0.00 | 0.00 | 35.67 | 1.75 |
1667 | 1778 | 8.383947 | AGATCATCTGTCCATGTCAATGAATAT | 58.616 | 33.333 | 0.00 | 0.00 | 35.67 | 1.28 |
1697 | 1808 | 2.499289 | AGTTTTGCCACAACCATCACAA | 59.501 | 40.909 | 0.00 | 0.00 | 0.00 | 3.33 |
1702 | 1813 | 2.762887 | TGCCACAACCATCACAAGAAAA | 59.237 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
1703 | 1814 | 3.387374 | TGCCACAACCATCACAAGAAAAT | 59.613 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
1704 | 1815 | 4.141756 | TGCCACAACCATCACAAGAAAATT | 60.142 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
1705 | 1816 | 4.448732 | GCCACAACCATCACAAGAAAATTC | 59.551 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
1706 | 1817 | 4.681025 | CCACAACCATCACAAGAAAATTCG | 59.319 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
1707 | 1818 | 5.507149 | CCACAACCATCACAAGAAAATTCGA | 60.507 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1743 | 1854 | 3.700038 | ACCTGTACTACCTCAAATCCGAG | 59.300 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
1757 | 1872 | 2.953466 | TCCGAGTTTCTTGTATCCCG | 57.047 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
1786 | 1902 | 1.029947 | CGGCGAGCCCCACTAAATTT | 61.030 | 55.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1842 | 1958 | 7.415095 | CGGTTAAATCAAACATCCTTCATGCTA | 60.415 | 37.037 | 0.00 | 0.00 | 35.65 | 3.49 |
1843 | 1959 | 7.702348 | GGTTAAATCAAACATCCTTCATGCTAC | 59.298 | 37.037 | 0.00 | 0.00 | 35.65 | 3.58 |
1844 | 1960 | 8.462016 | GTTAAATCAAACATCCTTCATGCTACT | 58.538 | 33.333 | 0.00 | 0.00 | 35.65 | 2.57 |
1845 | 1961 | 6.446781 | AATCAAACATCCTTCATGCTACTG | 57.553 | 37.500 | 0.00 | 0.00 | 35.65 | 2.74 |
1846 | 1962 | 4.910195 | TCAAACATCCTTCATGCTACTGT | 58.090 | 39.130 | 0.00 | 0.00 | 35.65 | 3.55 |
1847 | 1963 | 6.048732 | TCAAACATCCTTCATGCTACTGTA | 57.951 | 37.500 | 0.00 | 0.00 | 35.65 | 2.74 |
1928 | 2045 | 5.009610 | ACAGCAGGACGAACATTACAAAATT | 59.990 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1932 | 2049 | 8.395633 | AGCAGGACGAACATTACAAAATTATAC | 58.604 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
1934 | 2051 | 9.916397 | CAGGACGAACATTACAAAATTATACTC | 57.084 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
1935 | 2052 | 9.106070 | AGGACGAACATTACAAAATTATACTCC | 57.894 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
1936 | 2053 | 8.340443 | GGACGAACATTACAAAATTATACTCCC | 58.660 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
1937 | 2054 | 9.106070 | GACGAACATTACAAAATTATACTCCCT | 57.894 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
1938 | 2055 | 9.106070 | ACGAACATTACAAAATTATACTCCCTC | 57.894 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
1939 | 2056 | 8.557029 | CGAACATTACAAAATTATACTCCCTCC | 58.443 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
1940 | 2057 | 8.446599 | AACATTACAAAATTATACTCCCTCCG | 57.553 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
1941 | 2058 | 7.571025 | ACATTACAAAATTATACTCCCTCCGT | 58.429 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
1942 | 2059 | 7.713942 | ACATTACAAAATTATACTCCCTCCGTC | 59.286 | 37.037 | 0.00 | 0.00 | 0.00 | 4.79 |
1943 | 2060 | 5.032327 | ACAAAATTATACTCCCTCCGTCC | 57.968 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
1944 | 2061 | 4.141551 | ACAAAATTATACTCCCTCCGTCCC | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 4.46 |
1945 | 2062 | 3.339713 | AATTATACTCCCTCCGTCCCA | 57.660 | 47.619 | 0.00 | 0.00 | 0.00 | 4.37 |
1946 | 2063 | 2.852714 | TTATACTCCCTCCGTCCCAA | 57.147 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
1947 | 2064 | 2.852714 | TATACTCCCTCCGTCCCAAA | 57.147 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
1948 | 2065 | 1.961133 | ATACTCCCTCCGTCCCAAAA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1949 | 2066 | 1.961133 | TACTCCCTCCGTCCCAAAAT | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1950 | 2067 | 1.073098 | ACTCCCTCCGTCCCAAAATT | 58.927 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1951 | 2068 | 1.004394 | ACTCCCTCCGTCCCAAAATTC | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
1952 | 2069 | 1.282157 | CTCCCTCCGTCCCAAAATTCT | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
1953 | 2070 | 1.708551 | TCCCTCCGTCCCAAAATTCTT | 59.291 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
1954 | 2071 | 1.818674 | CCCTCCGTCCCAAAATTCTTG | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
1955 | 2072 | 2.514803 | CCTCCGTCCCAAAATTCTTGT | 58.485 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
1956 | 2073 | 2.488153 | CCTCCGTCCCAAAATTCTTGTC | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1957 | 2074 | 3.412386 | CTCCGTCCCAAAATTCTTGTCT | 58.588 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1958 | 2075 | 3.821033 | CTCCGTCCCAAAATTCTTGTCTT | 59.179 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
1959 | 2076 | 4.975631 | TCCGTCCCAAAATTCTTGTCTTA | 58.024 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
1960 | 2077 | 5.378332 | TCCGTCCCAAAATTCTTGTCTTAA | 58.622 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
1961 | 2078 | 5.828859 | TCCGTCCCAAAATTCTTGTCTTAAA | 59.171 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
1962 | 2079 | 6.492087 | TCCGTCCCAAAATTCTTGTCTTAAAT | 59.508 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
1963 | 2080 | 7.014808 | TCCGTCCCAAAATTCTTGTCTTAAATT | 59.985 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
1964 | 2081 | 7.655732 | CCGTCCCAAAATTCTTGTCTTAAATTT | 59.344 | 33.333 | 0.00 | 0.00 | 34.86 | 1.82 |
1965 | 2082 | 8.487176 | CGTCCCAAAATTCTTGTCTTAAATTTG | 58.513 | 33.333 | 0.00 | 0.00 | 33.95 | 2.32 |
1966 | 2083 | 9.325198 | GTCCCAAAATTCTTGTCTTAAATTTGT | 57.675 | 29.630 | 0.00 | 0.00 | 33.95 | 2.83 |
1967 | 2084 | 9.541143 | TCCCAAAATTCTTGTCTTAAATTTGTC | 57.459 | 29.630 | 0.00 | 0.00 | 33.95 | 3.18 |
1968 | 2085 | 9.546428 | CCCAAAATTCTTGTCTTAAATTTGTCT | 57.454 | 29.630 | 0.00 | 0.00 | 33.95 | 3.41 |
1976 | 2093 | 9.582431 | TCTTGTCTTAAATTTGTCTAGATACGG | 57.418 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
1977 | 2094 | 9.582431 | CTTGTCTTAAATTTGTCTAGATACGGA | 57.418 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
1979 | 2096 | 9.529325 | TGTCTTAAATTTGTCTAGATACGGATG | 57.471 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
1980 | 2097 | 9.530633 | GTCTTAAATTTGTCTAGATACGGATGT | 57.469 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
1983 | 2100 | 9.754382 | TTAAATTTGTCTAGATACGGATGTACC | 57.246 | 33.333 | 0.00 | 0.00 | 32.26 | 3.34 |
1984 | 2101 | 7.598759 | AATTTGTCTAGATACGGATGTACCT | 57.401 | 36.000 | 0.00 | 0.00 | 36.31 | 3.08 |
1985 | 2102 | 8.701908 | AATTTGTCTAGATACGGATGTACCTA | 57.298 | 34.615 | 0.00 | 0.00 | 36.31 | 3.08 |
1986 | 2103 | 8.701908 | ATTTGTCTAGATACGGATGTACCTAA | 57.298 | 34.615 | 0.00 | 0.00 | 36.31 | 2.69 |
1987 | 2104 | 8.701908 | TTTGTCTAGATACGGATGTACCTAAT | 57.298 | 34.615 | 0.00 | 0.00 | 36.31 | 1.73 |
1988 | 2105 | 9.797642 | TTTGTCTAGATACGGATGTACCTAATA | 57.202 | 33.333 | 0.00 | 0.00 | 36.31 | 0.98 |
1989 | 2106 | 8.783833 | TGTCTAGATACGGATGTACCTAATAC | 57.216 | 38.462 | 0.00 | 0.00 | 36.31 | 1.89 |
1990 | 2107 | 8.600668 | TGTCTAGATACGGATGTACCTAATACT | 58.399 | 37.037 | 0.00 | 0.00 | 34.56 | 2.12 |
1998 | 2115 | 8.882415 | ACGGATGTACCTAATACTAAAATGTG | 57.118 | 34.615 | 0.00 | 0.00 | 34.56 | 3.21 |
1999 | 2116 | 8.698210 | ACGGATGTACCTAATACTAAAATGTGA | 58.302 | 33.333 | 0.00 | 0.00 | 34.56 | 3.58 |
2000 | 2117 | 8.975439 | CGGATGTACCTAATACTAAAATGTGAC | 58.025 | 37.037 | 0.00 | 0.00 | 34.56 | 3.67 |
2003 | 2120 | 9.745880 | ATGTACCTAATACTAAAATGTGACTCG | 57.254 | 33.333 | 0.00 | 0.00 | 34.56 | 4.18 |
2004 | 2121 | 8.959548 | TGTACCTAATACTAAAATGTGACTCGA | 58.040 | 33.333 | 0.00 | 0.00 | 34.56 | 4.04 |
2005 | 2122 | 9.962783 | GTACCTAATACTAAAATGTGACTCGAT | 57.037 | 33.333 | 0.00 | 0.00 | 0.00 | 3.59 |
2007 | 2124 | 9.962783 | ACCTAATACTAAAATGTGACTCGATAC | 57.037 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2008 | 2125 | 9.961265 | CCTAATACTAAAATGTGACTCGATACA | 57.039 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2011 | 2128 | 9.477484 | AATACTAAAATGTGACTCGATACATCC | 57.523 | 33.333 | 9.59 | 0.00 | 36.56 | 3.51 |
2012 | 2129 | 5.977725 | ACTAAAATGTGACTCGATACATCCG | 59.022 | 40.000 | 9.59 | 0.00 | 36.56 | 4.18 |
2013 | 2130 | 4.386867 | AAATGTGACTCGATACATCCGT | 57.613 | 40.909 | 9.59 | 0.00 | 36.56 | 4.69 |
2014 | 2131 | 5.509716 | AAATGTGACTCGATACATCCGTA | 57.490 | 39.130 | 9.59 | 0.00 | 36.56 | 4.02 |
2015 | 2132 | 5.707242 | AATGTGACTCGATACATCCGTAT | 57.293 | 39.130 | 9.59 | 0.00 | 41.16 | 3.06 |
2016 | 2133 | 5.707242 | ATGTGACTCGATACATCCGTATT | 57.293 | 39.130 | 4.76 | 0.00 | 38.48 | 1.89 |
2017 | 2134 | 5.509716 | TGTGACTCGATACATCCGTATTT | 57.490 | 39.130 | 0.00 | 0.00 | 38.48 | 1.40 |
2018 | 2135 | 6.622833 | TGTGACTCGATACATCCGTATTTA | 57.377 | 37.500 | 0.00 | 0.00 | 38.48 | 1.40 |
2019 | 2136 | 6.665465 | TGTGACTCGATACATCCGTATTTAG | 58.335 | 40.000 | 0.00 | 0.00 | 38.48 | 1.85 |
2020 | 2137 | 6.484308 | TGTGACTCGATACATCCGTATTTAGA | 59.516 | 38.462 | 0.00 | 0.00 | 38.48 | 2.10 |
2021 | 2138 | 6.796072 | GTGACTCGATACATCCGTATTTAGAC | 59.204 | 42.308 | 0.00 | 0.00 | 38.48 | 2.59 |
2022 | 2139 | 6.484308 | TGACTCGATACATCCGTATTTAGACA | 59.516 | 38.462 | 0.00 | 0.00 | 38.48 | 3.41 |
2023 | 2140 | 7.012610 | TGACTCGATACATCCGTATTTAGACAA | 59.987 | 37.037 | 0.00 | 0.00 | 38.48 | 3.18 |
2024 | 2141 | 7.709947 | ACTCGATACATCCGTATTTAGACAAA | 58.290 | 34.615 | 0.00 | 0.00 | 38.48 | 2.83 |
2025 | 2142 | 8.358148 | ACTCGATACATCCGTATTTAGACAAAT | 58.642 | 33.333 | 0.00 | 0.00 | 38.48 | 2.32 |
2026 | 2143 | 8.738199 | TCGATACATCCGTATTTAGACAAATC | 57.262 | 34.615 | 0.00 | 0.00 | 38.48 | 2.17 |
2027 | 2144 | 8.573885 | TCGATACATCCGTATTTAGACAAATCT | 58.426 | 33.333 | 0.00 | 0.00 | 38.48 | 2.40 |
2028 | 2145 | 9.836076 | CGATACATCCGTATTTAGACAAATCTA | 57.164 | 33.333 | 0.00 | 0.00 | 38.48 | 1.98 |
2032 | 2149 | 9.530633 | ACATCCGTATTTAGACAAATCTAAGAC | 57.469 | 33.333 | 0.00 | 0.83 | 45.93 | 3.01 |
2033 | 2150 | 9.529325 | CATCCGTATTTAGACAAATCTAAGACA | 57.471 | 33.333 | 9.81 | 0.00 | 45.93 | 3.41 |
2035 | 2152 | 9.582431 | TCCGTATTTAGACAAATCTAAGACAAG | 57.418 | 33.333 | 9.81 | 3.88 | 45.93 | 3.16 |
2036 | 2153 | 9.582431 | CCGTATTTAGACAAATCTAAGACAAGA | 57.418 | 33.333 | 9.81 | 0.00 | 45.93 | 3.02 |
2044 | 2161 | 8.579863 | AGACAAATCTAAGACAAGAATTTTGGG | 58.420 | 33.333 | 0.00 | 0.00 | 33.04 | 4.12 |
2045 | 2162 | 8.477419 | ACAAATCTAAGACAAGAATTTTGGGA | 57.523 | 30.769 | 0.00 | 0.00 | 33.04 | 4.37 |
2046 | 2163 | 8.360390 | ACAAATCTAAGACAAGAATTTTGGGAC | 58.640 | 33.333 | 0.00 | 0.00 | 33.04 | 4.46 |
2047 | 2164 | 6.743575 | ATCTAAGACAAGAATTTTGGGACG | 57.256 | 37.500 | 5.68 | 0.00 | 0.00 | 4.79 |
2048 | 2165 | 5.001232 | TCTAAGACAAGAATTTTGGGACGG | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
2049 | 2166 | 3.502123 | AGACAAGAATTTTGGGACGGA | 57.498 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
2050 | 2167 | 3.412386 | AGACAAGAATTTTGGGACGGAG | 58.588 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
2051 | 2168 | 2.488153 | GACAAGAATTTTGGGACGGAGG | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2052 | 2169 | 1.818674 | CAAGAATTTTGGGACGGAGGG | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
2053 | 2170 | 1.368374 | AGAATTTTGGGACGGAGGGA | 58.632 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2054 | 2171 | 1.282157 | AGAATTTTGGGACGGAGGGAG | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
2139 | 2256 | 5.334724 | CCATCTATCGGTAAGTTCTACGACC | 60.335 | 48.000 | 0.00 | 0.00 | 38.24 | 4.79 |
2334 | 2451 | 2.004017 | CAAGCCGTACGCCTATTTTCA | 58.996 | 47.619 | 10.49 | 0.00 | 38.78 | 2.69 |
2507 | 2624 | 0.110486 | GCACCTGAACTGGAGGGAAA | 59.890 | 55.000 | 4.82 | 0.00 | 34.56 | 3.13 |
2526 | 2643 | 4.503910 | GAAAAACCCAGTGCTTGAAGTTT | 58.496 | 39.130 | 0.00 | 0.00 | 35.74 | 2.66 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
63 | 64 | 0.546122 | AATGAGCGCCCAATGGAGTA | 59.454 | 50.000 | 2.29 | 0.00 | 33.30 | 2.59 |
67 | 68 | 0.179020 | TCCTAATGAGCGCCCAATGG | 60.179 | 55.000 | 2.29 | 2.52 | 0.00 | 3.16 |
73 | 74 | 2.072298 | GTGATGATCCTAATGAGCGCC | 58.928 | 52.381 | 2.29 | 0.00 | 29.76 | 6.53 |
75 | 76 | 5.936686 | AAATGTGATGATCCTAATGAGCG | 57.063 | 39.130 | 0.00 | 0.00 | 29.76 | 5.03 |
76 | 77 | 7.268199 | TGAAAATGTGATGATCCTAATGAGC | 57.732 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
143 | 153 | 2.416747 | TCTCAACACATGCTGCTACAC | 58.583 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
254 | 272 | 8.961634 | GTCTGGACTCATCATACTAGCATTATA | 58.038 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
260 | 278 | 3.891977 | TGGTCTGGACTCATCATACTAGC | 59.108 | 47.826 | 0.67 | 0.00 | 0.00 | 3.42 |
266 | 284 | 3.070734 | GCTGTATGGTCTGGACTCATCAT | 59.929 | 47.826 | 0.67 | 0.00 | 0.00 | 2.45 |
538 | 557 | 3.628487 | ACCTACGATCTTCCTCTTCTTCG | 59.372 | 47.826 | 0.00 | 0.00 | 0.00 | 3.79 |
584 | 603 | 9.276590 | CCATGTGATGCTTATCTTTGACTAATA | 57.723 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
728 | 754 | 7.818642 | AGAAACTAATACTAGCGCTACATAGG | 58.181 | 38.462 | 14.45 | 6.02 | 0.00 | 2.57 |
736 | 762 | 8.576936 | AATTCTGTAGAAACTAATACTAGCGC | 57.423 | 34.615 | 0.00 | 0.00 | 37.61 | 5.92 |
858 | 890 | 1.351017 | AGTCGGGAATGGAGCAAAAGA | 59.649 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
871 | 903 | 7.230108 | CCATGTCTTAAGTTATACTAGTCGGGA | 59.770 | 40.741 | 0.00 | 0.00 | 0.00 | 5.14 |
894 | 926 | 1.442769 | GAGTGAACATGTGACGCCAT | 58.557 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1107 | 1197 | 4.477975 | GGCAGGAGACGACGACGG | 62.478 | 72.222 | 12.58 | 0.00 | 44.46 | 4.79 |
1110 | 1200 | 2.750637 | GGAGGCAGGAGACGACGA | 60.751 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
1138 | 1228 | 0.636101 | AGAGGAGATGGAGCAGGAGT | 59.364 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1360 | 1453 | 3.307906 | TCGAACCCCACCTCCACG | 61.308 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
1411 | 1504 | 8.334632 | GTTCCCAACTAATTGTGATTTTTGTTG | 58.665 | 33.333 | 0.00 | 0.00 | 33.60 | 3.33 |
1423 | 1516 | 6.183347 | AGGAGATTCAGTTCCCAACTAATTG | 58.817 | 40.000 | 0.00 | 0.00 | 40.46 | 2.32 |
1431 | 1524 | 2.921221 | AGGAAGGAGATTCAGTTCCCA | 58.079 | 47.619 | 7.66 | 0.00 | 39.54 | 4.37 |
1503 | 1614 | 5.247337 | TCTCTACAAGTGAGAGAGAGAGTGA | 59.753 | 44.000 | 11.29 | 0.00 | 43.57 | 3.41 |
1674 | 1785 | 3.055530 | TGTGATGGTTGTGGCAAAACTTT | 60.056 | 39.130 | 19.43 | 7.85 | 0.00 | 2.66 |
1682 | 1793 | 3.451141 | TTTTCTTGTGATGGTTGTGGC | 57.549 | 42.857 | 0.00 | 0.00 | 0.00 | 5.01 |
1697 | 1808 | 8.186821 | GGTCAGATGAATTGAATCGAATTTTCT | 58.813 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1702 | 1813 | 6.118170 | ACAGGTCAGATGAATTGAATCGAAT | 58.882 | 36.000 | 0.00 | 0.00 | 0.00 | 3.34 |
1703 | 1814 | 5.491070 | ACAGGTCAGATGAATTGAATCGAA | 58.509 | 37.500 | 0.00 | 0.00 | 0.00 | 3.71 |
1704 | 1815 | 5.089970 | ACAGGTCAGATGAATTGAATCGA | 57.910 | 39.130 | 0.00 | 0.00 | 0.00 | 3.59 |
1705 | 1816 | 6.045318 | AGTACAGGTCAGATGAATTGAATCG | 58.955 | 40.000 | 0.00 | 0.00 | 0.00 | 3.34 |
1706 | 1817 | 7.439655 | GGTAGTACAGGTCAGATGAATTGAATC | 59.560 | 40.741 | 2.06 | 0.00 | 0.00 | 2.52 |
1707 | 1818 | 7.126421 | AGGTAGTACAGGTCAGATGAATTGAAT | 59.874 | 37.037 | 2.06 | 0.00 | 0.00 | 2.57 |
1743 | 1854 | 6.238022 | CGGAAATCTAACGGGATACAAGAAAC | 60.238 | 42.308 | 0.00 | 0.00 | 39.74 | 2.78 |
1757 | 1872 | 1.158484 | GGGCTCGCCGGAAATCTAAC | 61.158 | 60.000 | 5.05 | 0.00 | 36.85 | 2.34 |
1817 | 1933 | 6.633856 | AGCATGAAGGATGTTTGATTTAACC | 58.366 | 36.000 | 0.00 | 0.00 | 34.14 | 2.85 |
1842 | 1958 | 4.935808 | GGTGTTGCTGCTAGTTTATACAGT | 59.064 | 41.667 | 0.00 | 0.00 | 32.65 | 3.55 |
1843 | 1959 | 4.935205 | TGGTGTTGCTGCTAGTTTATACAG | 59.065 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
1844 | 1960 | 4.900684 | TGGTGTTGCTGCTAGTTTATACA | 58.099 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
1845 | 1961 | 5.873179 | TTGGTGTTGCTGCTAGTTTATAC | 57.127 | 39.130 | 0.00 | 0.00 | 0.00 | 1.47 |
1846 | 1962 | 6.176896 | TCATTGGTGTTGCTGCTAGTTTATA | 58.823 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
1847 | 1963 | 5.009631 | TCATTGGTGTTGCTGCTAGTTTAT | 58.990 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
1928 | 2045 | 2.852714 | TTTGGGACGGAGGGAGTATA | 57.147 | 50.000 | 0.00 | 0.00 | 0.00 | 1.47 |
1932 | 2049 | 1.282157 | AGAATTTTGGGACGGAGGGAG | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
1934 | 2051 | 1.818674 | CAAGAATTTTGGGACGGAGGG | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
1935 | 2052 | 2.488153 | GACAAGAATTTTGGGACGGAGG | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1936 | 2053 | 3.412386 | AGACAAGAATTTTGGGACGGAG | 58.588 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
1937 | 2054 | 3.502123 | AGACAAGAATTTTGGGACGGA | 57.498 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
1938 | 2055 | 5.699097 | TTAAGACAAGAATTTTGGGACGG | 57.301 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
1939 | 2056 | 8.487176 | CAAATTTAAGACAAGAATTTTGGGACG | 58.513 | 33.333 | 0.00 | 0.00 | 32.35 | 4.79 |
1940 | 2057 | 9.325198 | ACAAATTTAAGACAAGAATTTTGGGAC | 57.675 | 29.630 | 0.00 | 0.00 | 33.39 | 4.46 |
1941 | 2058 | 9.541143 | GACAAATTTAAGACAAGAATTTTGGGA | 57.459 | 29.630 | 0.00 | 0.00 | 33.39 | 4.37 |
1942 | 2059 | 9.546428 | AGACAAATTTAAGACAAGAATTTTGGG | 57.454 | 29.630 | 0.00 | 0.00 | 33.39 | 4.12 |
1950 | 2067 | 9.582431 | CCGTATCTAGACAAATTTAAGACAAGA | 57.418 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
1951 | 2068 | 9.582431 | TCCGTATCTAGACAAATTTAAGACAAG | 57.418 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
1953 | 2070 | 9.529325 | CATCCGTATCTAGACAAATTTAAGACA | 57.471 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1954 | 2071 | 9.530633 | ACATCCGTATCTAGACAAATTTAAGAC | 57.469 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1957 | 2074 | 9.754382 | GGTACATCCGTATCTAGACAAATTTAA | 57.246 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
1958 | 2075 | 9.139734 | AGGTACATCCGTATCTAGACAAATTTA | 57.860 | 33.333 | 0.00 | 0.00 | 37.29 | 1.40 |
1959 | 2076 | 8.019656 | AGGTACATCCGTATCTAGACAAATTT | 57.980 | 34.615 | 0.00 | 0.00 | 37.29 | 1.82 |
1960 | 2077 | 7.598759 | AGGTACATCCGTATCTAGACAAATT | 57.401 | 36.000 | 0.00 | 0.00 | 37.29 | 1.82 |
1961 | 2078 | 8.701908 | TTAGGTACATCCGTATCTAGACAAAT | 57.298 | 34.615 | 0.00 | 0.00 | 41.33 | 2.32 |
1962 | 2079 | 8.701908 | ATTAGGTACATCCGTATCTAGACAAA | 57.298 | 34.615 | 0.00 | 0.00 | 41.33 | 2.83 |
1963 | 2080 | 9.224267 | GTATTAGGTACATCCGTATCTAGACAA | 57.776 | 37.037 | 0.00 | 0.00 | 41.33 | 3.18 |
1964 | 2081 | 8.600668 | AGTATTAGGTACATCCGTATCTAGACA | 58.399 | 37.037 | 0.00 | 0.00 | 41.33 | 3.41 |
1972 | 2089 | 9.970395 | CACATTTTAGTATTAGGTACATCCGTA | 57.030 | 33.333 | 0.00 | 0.00 | 41.99 | 4.02 |
1973 | 2090 | 8.698210 | TCACATTTTAGTATTAGGTACATCCGT | 58.302 | 33.333 | 0.00 | 0.00 | 41.99 | 4.69 |
1974 | 2091 | 8.975439 | GTCACATTTTAGTATTAGGTACATCCG | 58.025 | 37.037 | 0.00 | 0.00 | 41.99 | 4.18 |
1977 | 2094 | 9.745880 | CGAGTCACATTTTAGTATTAGGTACAT | 57.254 | 33.333 | 0.00 | 0.00 | 35.67 | 2.29 |
1978 | 2095 | 8.959548 | TCGAGTCACATTTTAGTATTAGGTACA | 58.040 | 33.333 | 0.00 | 0.00 | 35.67 | 2.90 |
1979 | 2096 | 9.962783 | ATCGAGTCACATTTTAGTATTAGGTAC | 57.037 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
1981 | 2098 | 9.962783 | GTATCGAGTCACATTTTAGTATTAGGT | 57.037 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
1982 | 2099 | 9.961265 | TGTATCGAGTCACATTTTAGTATTAGG | 57.039 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
1985 | 2102 | 9.477484 | GGATGTATCGAGTCACATTTTAGTATT | 57.523 | 33.333 | 10.38 | 0.00 | 35.55 | 1.89 |
1986 | 2103 | 7.808381 | CGGATGTATCGAGTCACATTTTAGTAT | 59.192 | 37.037 | 10.38 | 0.00 | 35.55 | 2.12 |
1987 | 2104 | 7.136772 | CGGATGTATCGAGTCACATTTTAGTA | 58.863 | 38.462 | 10.38 | 0.00 | 35.55 | 1.82 |
1988 | 2105 | 5.977725 | CGGATGTATCGAGTCACATTTTAGT | 59.022 | 40.000 | 10.38 | 0.00 | 35.55 | 2.24 |
1989 | 2106 | 5.977725 | ACGGATGTATCGAGTCACATTTTAG | 59.022 | 40.000 | 10.38 | 6.39 | 35.55 | 1.85 |
1990 | 2107 | 5.898174 | ACGGATGTATCGAGTCACATTTTA | 58.102 | 37.500 | 10.38 | 0.00 | 35.55 | 1.52 |
1991 | 2108 | 4.755411 | ACGGATGTATCGAGTCACATTTT | 58.245 | 39.130 | 10.38 | 0.00 | 35.55 | 1.82 |
1992 | 2109 | 4.386867 | ACGGATGTATCGAGTCACATTT | 57.613 | 40.909 | 10.38 | 0.00 | 35.55 | 2.32 |
1993 | 2110 | 5.707242 | ATACGGATGTATCGAGTCACATT | 57.293 | 39.130 | 10.38 | 0.55 | 36.56 | 2.71 |
1994 | 2111 | 5.707242 | AATACGGATGTATCGAGTCACAT | 57.293 | 39.130 | 9.18 | 9.18 | 40.42 | 3.21 |
1995 | 2112 | 5.509716 | AAATACGGATGTATCGAGTCACA | 57.490 | 39.130 | 0.00 | 0.00 | 40.42 | 3.58 |
1996 | 2113 | 6.796072 | GTCTAAATACGGATGTATCGAGTCAC | 59.204 | 42.308 | 0.00 | 0.00 | 40.42 | 3.67 |
1997 | 2114 | 6.484308 | TGTCTAAATACGGATGTATCGAGTCA | 59.516 | 38.462 | 0.00 | 0.00 | 40.42 | 3.41 |
1998 | 2115 | 6.895898 | TGTCTAAATACGGATGTATCGAGTC | 58.104 | 40.000 | 0.00 | 0.00 | 40.42 | 3.36 |
1999 | 2116 | 6.872628 | TGTCTAAATACGGATGTATCGAGT | 57.127 | 37.500 | 0.00 | 0.00 | 40.42 | 4.18 |
2000 | 2117 | 8.744008 | ATTTGTCTAAATACGGATGTATCGAG | 57.256 | 34.615 | 0.00 | 0.00 | 40.42 | 4.04 |
2001 | 2118 | 8.573885 | AGATTTGTCTAAATACGGATGTATCGA | 58.426 | 33.333 | 0.00 | 0.00 | 40.42 | 3.59 |
2002 | 2119 | 8.744008 | AGATTTGTCTAAATACGGATGTATCG | 57.256 | 34.615 | 0.00 | 0.00 | 40.42 | 2.92 |
2006 | 2123 | 9.530633 | GTCTTAGATTTGTCTAAATACGGATGT | 57.469 | 33.333 | 0.26 | 0.00 | 36.66 | 3.06 |
2007 | 2124 | 9.529325 | TGTCTTAGATTTGTCTAAATACGGATG | 57.471 | 33.333 | 0.26 | 0.00 | 36.66 | 3.51 |
2009 | 2126 | 9.582431 | CTTGTCTTAGATTTGTCTAAATACGGA | 57.418 | 33.333 | 0.26 | 0.00 | 36.66 | 4.69 |
2010 | 2127 | 9.582431 | TCTTGTCTTAGATTTGTCTAAATACGG | 57.418 | 33.333 | 0.26 | 0.99 | 36.66 | 4.02 |
2018 | 2135 | 8.579863 | CCCAAAATTCTTGTCTTAGATTTGTCT | 58.420 | 33.333 | 0.00 | 0.00 | 28.79 | 3.41 |
2019 | 2136 | 8.576442 | TCCCAAAATTCTTGTCTTAGATTTGTC | 58.424 | 33.333 | 0.00 | 0.00 | 28.79 | 3.18 |
2020 | 2137 | 8.360390 | GTCCCAAAATTCTTGTCTTAGATTTGT | 58.640 | 33.333 | 0.00 | 0.00 | 28.79 | 2.83 |
2021 | 2138 | 7.538678 | CGTCCCAAAATTCTTGTCTTAGATTTG | 59.461 | 37.037 | 0.00 | 0.00 | 29.84 | 2.32 |
2022 | 2139 | 7.309194 | CCGTCCCAAAATTCTTGTCTTAGATTT | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
2023 | 2140 | 6.151144 | CCGTCCCAAAATTCTTGTCTTAGATT | 59.849 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
2024 | 2141 | 5.648092 | CCGTCCCAAAATTCTTGTCTTAGAT | 59.352 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2025 | 2142 | 5.001232 | CCGTCCCAAAATTCTTGTCTTAGA | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
2026 | 2143 | 5.001232 | TCCGTCCCAAAATTCTTGTCTTAG | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 2.18 |
2027 | 2144 | 4.975631 | TCCGTCCCAAAATTCTTGTCTTA | 58.024 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
2028 | 2145 | 3.821033 | CTCCGTCCCAAAATTCTTGTCTT | 59.179 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
2029 | 2146 | 3.412386 | CTCCGTCCCAAAATTCTTGTCT | 58.588 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
2030 | 2147 | 2.488153 | CCTCCGTCCCAAAATTCTTGTC | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2031 | 2148 | 2.514803 | CCTCCGTCCCAAAATTCTTGT | 58.485 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
2032 | 2149 | 1.818674 | CCCTCCGTCCCAAAATTCTTG | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
2033 | 2150 | 1.708551 | TCCCTCCGTCCCAAAATTCTT | 59.291 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
2034 | 2151 | 1.282157 | CTCCCTCCGTCCCAAAATTCT | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
2035 | 2152 | 1.004394 | ACTCCCTCCGTCCCAAAATTC | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
2036 | 2153 | 1.073098 | ACTCCCTCCGTCCCAAAATT | 58.927 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2037 | 2154 | 1.961133 | TACTCCCTCCGTCCCAAAAT | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2038 | 2155 | 1.732117 | TTACTCCCTCCGTCCCAAAA | 58.268 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2039 | 2156 | 1.961133 | ATTACTCCCTCCGTCCCAAA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2040 | 2157 | 2.767960 | GTTATTACTCCCTCCGTCCCAA | 59.232 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
2041 | 2158 | 2.292389 | TGTTATTACTCCCTCCGTCCCA | 60.292 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2042 | 2159 | 2.391678 | TGTTATTACTCCCTCCGTCCC | 58.608 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
2043 | 2160 | 4.476628 | TTTGTTATTACTCCCTCCGTCC | 57.523 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
2044 | 2161 | 7.254218 | CGTTTATTTGTTATTACTCCCTCCGTC | 60.254 | 40.741 | 0.00 | 0.00 | 0.00 | 4.79 |
2045 | 2162 | 6.536224 | CGTTTATTTGTTATTACTCCCTCCGT | 59.464 | 38.462 | 0.00 | 0.00 | 0.00 | 4.69 |
2046 | 2163 | 6.536224 | ACGTTTATTTGTTATTACTCCCTCCG | 59.464 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
2047 | 2164 | 7.550196 | TCACGTTTATTTGTTATTACTCCCTCC | 59.450 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2048 | 2165 | 8.483307 | TCACGTTTATTTGTTATTACTCCCTC | 57.517 | 34.615 | 0.00 | 0.00 | 0.00 | 4.30 |
2049 | 2166 | 8.724229 | GTTCACGTTTATTTGTTATTACTCCCT | 58.276 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
2050 | 2167 | 8.505625 | TGTTCACGTTTATTTGTTATTACTCCC | 58.494 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
2051 | 2168 | 9.881529 | TTGTTCACGTTTATTTGTTATTACTCC | 57.118 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
2139 | 2256 | 6.934645 | TGATATTAACATTTTAGGGCTCCTCG | 59.065 | 38.462 | 0.00 | 0.00 | 34.61 | 4.63 |
2507 | 2624 | 2.168313 | CCAAACTTCAAGCACTGGGTTT | 59.832 | 45.455 | 0.00 | 0.00 | 34.26 | 3.27 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.