Multiple sequence alignment - TraesCS4B01G127900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G127900 chr4B 100.000 3461 0 0 1 3461 167391241 167394701 0.000000e+00 6392.0
1 TraesCS4B01G127900 chr4B 99.273 550 4 0 1 550 434354631 434354082 0.000000e+00 994.0
2 TraesCS4B01G127900 chr4B 99.451 546 3 0 1 546 306594655 306594110 0.000000e+00 992.0
3 TraesCS4B01G127900 chr4B 99.451 546 3 0 1 546 655246748 655246203 0.000000e+00 992.0
4 TraesCS4B01G127900 chr4B 99.269 547 4 0 1 547 306587607 306587061 0.000000e+00 989.0
5 TraesCS4B01G127900 chr4B 95.745 94 3 1 2587 2679 115550346 115550253 2.150000e-32 150.0
6 TraesCS4B01G127900 chr4D 95.709 2051 83 4 546 2592 109216389 109214340 0.000000e+00 3295.0
7 TraesCS4B01G127900 chr4D 93.814 388 15 5 2676 3062 109214343 109213964 3.000000e-160 575.0
8 TraesCS4B01G127900 chr4D 97.656 256 6 0 3206 3461 6901331 6901076 1.140000e-119 440.0
9 TraesCS4B01G127900 chr4D 96.887 257 8 0 3205 3461 473813370 473813114 6.860000e-117 431.0
10 TraesCS4B01G127900 chr4D 92.513 187 12 1 3021 3205 109213879 109213693 2.050000e-67 267.0
11 TraesCS4B01G127900 chr4D 90.090 111 9 2 2591 2700 9296466 9296575 3.600000e-30 143.0
12 TraesCS4B01G127900 chr4D 92.982 57 2 1 3023 3077 109213952 109213896 7.960000e-12 82.4
13 TraesCS4B01G127900 chr4A 94.294 2068 98 7 546 2593 467297028 467299095 0.000000e+00 3147.0
14 TraesCS4B01G127900 chr4A 91.026 546 31 9 2677 3205 467299097 467299641 0.000000e+00 721.0
15 TraesCS4B01G127900 chr4A 96.094 256 10 0 3206 3461 626962784 626963039 5.340000e-113 418.0
16 TraesCS4B01G127900 chr7B 99.817 546 1 0 1 546 381565889 381566434 0.000000e+00 1003.0
17 TraesCS4B01G127900 chr7B 99.093 551 5 0 1 551 634327115 634326565 0.000000e+00 990.0
18 TraesCS4B01G127900 chr5B 99.451 546 3 0 1 546 665592161 665591616 0.000000e+00 992.0
19 TraesCS4B01G127900 chr5B 94.949 99 4 1 2586 2683 644346844 644346942 1.660000e-33 154.0
20 TraesCS4B01G127900 chr1B 99.451 546 3 0 1 546 610328442 610328987 0.000000e+00 992.0
21 TraesCS4B01G127900 chr1B 99.451 546 3 0 1 546 610519102 610518557 0.000000e+00 992.0
22 TraesCS4B01G127900 chr7A 96.169 261 7 2 3202 3461 110944171 110943913 1.150000e-114 424.0
23 TraesCS4B01G127900 chr7A 96.109 257 9 1 3206 3461 563822703 563822447 5.340000e-113 418.0
24 TraesCS4B01G127900 chr7A 94.697 264 10 2 3198 3461 403181876 403182135 1.160000e-109 407.0
25 TraesCS4B01G127900 chr7A 94.697 264 10 2 3198 3461 403186178 403186437 1.160000e-109 407.0
26 TraesCS4B01G127900 chr3D 96.484 256 9 0 3206 3461 209674727 209674982 1.150000e-114 424.0
27 TraesCS4B01G127900 chr5A 95.736 258 10 1 3205 3461 26686520 26686263 6.910000e-112 414.0
28 TraesCS4B01G127900 chr5A 90.000 110 9 2 2592 2700 623008647 623008755 1.300000e-29 141.0
29 TraesCS4B01G127900 chr1A 97.727 88 2 0 2589 2676 548488448 548488361 5.980000e-33 152.0
30 TraesCS4B01G127900 chr2B 92.453 106 6 2 2581 2685 142245574 142245678 2.150000e-32 150.0
31 TraesCS4B01G127900 chr2B 90.265 113 10 1 2588 2699 443758929 443759041 2.780000e-31 147.0
32 TraesCS4B01G127900 chr6B 93.878 98 5 1 2588 2684 369484926 369484829 2.780000e-31 147.0
33 TraesCS4B01G127900 chr2A 92.308 104 6 2 2592 2694 723624715 723624817 2.780000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G127900 chr4B 167391241 167394701 3460 False 6392.00 6392 100.0000 1 3461 1 chr4B.!!$F1 3460
1 TraesCS4B01G127900 chr4B 434354082 434354631 549 True 994.00 994 99.2730 1 550 1 chr4B.!!$R4 549
2 TraesCS4B01G127900 chr4B 306594110 306594655 545 True 992.00 992 99.4510 1 546 1 chr4B.!!$R3 545
3 TraesCS4B01G127900 chr4B 655246203 655246748 545 True 992.00 992 99.4510 1 546 1 chr4B.!!$R5 545
4 TraesCS4B01G127900 chr4B 306587061 306587607 546 True 989.00 989 99.2690 1 547 1 chr4B.!!$R2 546
5 TraesCS4B01G127900 chr4D 109213693 109216389 2696 True 1054.85 3295 93.7545 546 3205 4 chr4D.!!$R3 2659
6 TraesCS4B01G127900 chr4A 467297028 467299641 2613 False 1934.00 3147 92.6600 546 3205 2 chr4A.!!$F2 2659
7 TraesCS4B01G127900 chr7B 381565889 381566434 545 False 1003.00 1003 99.8170 1 546 1 chr7B.!!$F1 545
8 TraesCS4B01G127900 chr7B 634326565 634327115 550 True 990.00 990 99.0930 1 551 1 chr7B.!!$R1 550
9 TraesCS4B01G127900 chr5B 665591616 665592161 545 True 992.00 992 99.4510 1 546 1 chr5B.!!$R1 545
10 TraesCS4B01G127900 chr1B 610328442 610328987 545 False 992.00 992 99.4510 1 546 1 chr1B.!!$F1 545
11 TraesCS4B01G127900 chr1B 610518557 610519102 545 True 992.00 992 99.4510 1 546 1 chr1B.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 830 0.392998 GGAAATCAGCGAGAAGGCCA 60.393 55.0 5.01 0.0 0.0 5.36 F
1389 1396 0.613260 TCCATGTTCAGGTCCCTTCG 59.387 55.0 0.00 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 2044 1.153289 GGCATGCATCCACGAGTCT 60.153 57.895 21.36 0.0 0.0 3.24 R
3218 3385 0.099791 CGCTTCAACGTGGTGGTTTT 59.900 50.000 0.00 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
588 589 1.867233 GCTTCCGACGATTGTATGCAT 59.133 47.619 3.79 3.79 0.00 3.96
590 591 1.864565 TCCGACGATTGTATGCATGG 58.135 50.000 10.16 0.00 0.00 3.66
714 718 7.055667 TGATACTCACTGTGAAGAGAAAAGT 57.944 36.000 12.16 6.17 35.83 2.66
738 742 3.947196 TCACATTTGTGGCAGATGATACC 59.053 43.478 10.60 0.00 45.65 2.73
778 782 6.688922 GCCTTGTAACCATCCTGAGATCAATA 60.689 42.308 0.00 0.00 0.00 1.90
779 783 7.282585 CCTTGTAACCATCCTGAGATCAATAA 58.717 38.462 0.00 0.00 0.00 1.40
826 830 0.392998 GGAAATCAGCGAGAAGGCCA 60.393 55.000 5.01 0.00 0.00 5.36
871 875 5.247564 ACCTGTACTGGAAGCTGTAACAATA 59.752 40.000 24.19 0.00 37.60 1.90
877 881 6.947464 ACTGGAAGCTGTAACAATAGTGTAT 58.053 36.000 0.00 0.00 34.73 2.29
948 952 5.070981 TGTTATGAGGCAGGATCTTCCTTAG 59.929 44.000 0.00 0.00 46.91 2.18
1087 1091 0.979665 CTTGGCCTCCAGAGAGAACA 59.020 55.000 3.32 0.00 43.39 3.18
1218 1225 7.093771 GGAGTTTATTGGAAGGATGTTGTTCAT 60.094 37.037 0.00 0.00 39.77 2.57
1261 1268 7.346698 TGGAGCAAAATGATAAATTGGGGAATA 59.653 33.333 0.00 0.00 0.00 1.75
1315 1322 3.777106 AGTTTGAGCTTGACATGAGGA 57.223 42.857 0.00 0.00 0.00 3.71
1326 1333 5.491070 CTTGACATGAGGACAATTGACCTA 58.509 41.667 26.14 15.94 40.17 3.08
1373 1380 4.204799 CTGAAGGATGCATCAAGATTCCA 58.795 43.478 27.25 13.17 0.00 3.53
1389 1396 0.613260 TCCATGTTCAGGTCCCTTCG 59.387 55.000 0.00 0.00 0.00 3.79
1523 1530 5.104527 ACCTATTTGATCTTCCATTCGACCA 60.105 40.000 0.00 0.00 0.00 4.02
1570 1577 1.014564 GGAAAGTTGGACTCCTCGCG 61.015 60.000 0.00 0.00 0.00 5.87
1587 1594 3.558411 GCGCGCTTTCGATCAGCT 61.558 61.111 26.67 0.00 38.10 4.24
1598 1605 2.071540 TCGATCAGCTCAAGCACAAAG 58.928 47.619 4.59 0.00 45.16 2.77
1621 1628 5.246203 AGCATGAAGTACAGGAACTCTTGTA 59.754 40.000 0.00 0.00 37.38 2.41
1643 1662 9.692749 TTGTAGACAAAATCACTCTACTTACAG 57.307 33.333 0.00 0.00 38.06 2.74
1655 1674 5.542635 ACTCTACTTACAGTGGTGAAATGGA 59.457 40.000 0.00 0.00 0.00 3.41
1656 1675 6.213600 ACTCTACTTACAGTGGTGAAATGGAT 59.786 38.462 0.00 0.00 0.00 3.41
1667 1686 5.882557 GTGGTGAAATGGATGATAGTCACTT 59.117 40.000 0.00 0.00 36.48 3.16
1700 1719 1.352017 TGAGCAAGAAGGGAGCAATGA 59.648 47.619 0.00 0.00 0.00 2.57
1701 1720 2.224843 TGAGCAAGAAGGGAGCAATGAA 60.225 45.455 0.00 0.00 0.00 2.57
1749 1768 6.810182 CACATTTGGGTGAAGAGATGAAAATC 59.190 38.462 0.00 0.00 41.32 2.17
1796 1815 1.153449 TGCTGGGCGAGGTAAATCG 60.153 57.895 0.00 0.00 45.48 3.34
1859 1878 1.972660 GCAGCCTCATTACCCGGAGT 61.973 60.000 0.73 0.99 0.00 3.85
1903 1922 2.497675 GTGGAAGCAGACTCCATGAGTA 59.502 50.000 0.00 0.00 43.53 2.59
2016 2035 1.745320 AAGCTATACCGAGTGCCCCG 61.745 60.000 0.00 0.00 0.00 5.73
2025 2044 0.174845 CGAGTGCCCCGTTATCTTCA 59.825 55.000 0.00 0.00 0.00 3.02
2201 2220 2.688446 TGGTATACGAGCAGAGTTCAGG 59.312 50.000 0.00 0.00 0.00 3.86
2263 2282 5.471116 TCTGAACCAAATGAGACATTGACTG 59.529 40.000 0.00 0.00 0.00 3.51
2307 2326 5.220381 GTCGTAGAAGTTGTCAATGTCTCA 58.780 41.667 4.68 0.00 39.69 3.27
2420 2439 0.984230 TGTCAAGTGGAGGTGGATCC 59.016 55.000 4.20 4.20 40.03 3.36
2468 2487 1.883084 CGGCGCCATAACTCTGGAC 60.883 63.158 28.98 0.00 38.69 4.02
2548 2567 0.466543 AGGTGTGTGAGGTTTGCGTA 59.533 50.000 0.00 0.00 0.00 4.42
2556 2575 2.415512 GTGAGGTTTGCGTAACAGGATC 59.584 50.000 4.22 0.00 38.55 3.36
2561 2580 0.613260 TTGCGTAACAGGATCCAGCT 59.387 50.000 15.82 0.00 0.00 4.24
2585 2606 5.690409 TGTTCGTTCAGCTACTTGTAGAAAG 59.310 40.000 11.54 1.24 0.00 2.62
2594 2615 9.409918 TCAGCTACTTGTAGAAAGACATATACT 57.590 33.333 11.54 0.00 0.00 2.12
2595 2616 9.672086 CAGCTACTTGTAGAAAGACATATACTC 57.328 37.037 11.54 0.00 0.00 2.59
2596 2617 8.852135 AGCTACTTGTAGAAAGACATATACTCC 58.148 37.037 11.54 0.00 0.00 3.85
2597 2618 8.083462 GCTACTTGTAGAAAGACATATACTCCC 58.917 40.741 11.54 0.00 0.00 4.30
2598 2619 9.357161 CTACTTGTAGAAAGACATATACTCCCT 57.643 37.037 1.81 0.00 0.00 4.20
2599 2620 8.240267 ACTTGTAGAAAGACATATACTCCCTC 57.760 38.462 0.00 0.00 0.00 4.30
2600 2621 7.288158 ACTTGTAGAAAGACATATACTCCCTCC 59.712 40.741 0.00 0.00 0.00 4.30
2601 2622 5.768662 TGTAGAAAGACATATACTCCCTCCG 59.231 44.000 0.00 0.00 0.00 4.63
2602 2623 4.805744 AGAAAGACATATACTCCCTCCGT 58.194 43.478 0.00 0.00 0.00 4.69
2603 2624 5.209659 AGAAAGACATATACTCCCTCCGTT 58.790 41.667 0.00 0.00 0.00 4.44
2604 2625 5.302313 AGAAAGACATATACTCCCTCCGTTC 59.698 44.000 0.00 0.00 0.00 3.95
2605 2626 3.498334 AGACATATACTCCCTCCGTTCC 58.502 50.000 0.00 0.00 0.00 3.62
2606 2627 3.117246 AGACATATACTCCCTCCGTTCCA 60.117 47.826 0.00 0.00 0.00 3.53
2607 2628 3.640029 GACATATACTCCCTCCGTTCCAA 59.360 47.826 0.00 0.00 0.00 3.53
2608 2629 4.035112 ACATATACTCCCTCCGTTCCAAA 58.965 43.478 0.00 0.00 0.00 3.28
2609 2630 4.472108 ACATATACTCCCTCCGTTCCAAAA 59.528 41.667 0.00 0.00 0.00 2.44
2610 2631 5.132144 ACATATACTCCCTCCGTTCCAAAAT 59.868 40.000 0.00 0.00 0.00 1.82
2611 2632 6.328148 ACATATACTCCCTCCGTTCCAAAATA 59.672 38.462 0.00 0.00 0.00 1.40
2612 2633 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2613 2634 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2614 2635 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2615 2636 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2616 2637 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2617 2638 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2618 2639 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2619 2640 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2620 2641 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2621 2642 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2622 2643 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2623 2644 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2624 2645 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2625 2646 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2626 2647 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
2627 2648 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2628 2649 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2629 2650 9.739276 TCCAAAATAGATGACTCAACTTTGTAT 57.261 29.630 0.00 0.00 0.00 2.29
2667 2688 9.893305 AAAGTTGAGTCATCTATTTTAAAACGG 57.107 29.630 1.97 0.00 0.00 4.44
2668 2689 8.842358 AGTTGAGTCATCTATTTTAAAACGGA 57.158 30.769 1.97 5.09 0.00 4.69
2669 2690 8.936864 AGTTGAGTCATCTATTTTAAAACGGAG 58.063 33.333 1.97 1.74 0.00 4.63
2670 2691 7.843490 TGAGTCATCTATTTTAAAACGGAGG 57.157 36.000 1.97 6.55 0.00 4.30
2671 2692 6.821665 TGAGTCATCTATTTTAAAACGGAGGG 59.178 38.462 1.97 2.46 0.00 4.30
2672 2693 6.954232 AGTCATCTATTTTAAAACGGAGGGA 58.046 36.000 1.97 4.48 0.00 4.20
2673 2694 7.048512 AGTCATCTATTTTAAAACGGAGGGAG 58.951 38.462 1.97 0.00 0.00 4.30
2674 2695 6.822170 GTCATCTATTTTAAAACGGAGGGAGT 59.178 38.462 1.97 0.00 0.00 3.85
2675 2696 7.983484 GTCATCTATTTTAAAACGGAGGGAGTA 59.017 37.037 1.97 0.00 0.00 2.59
2732 2753 2.224354 TGAGATGCTGCACTGAGACAAA 60.224 45.455 3.57 0.00 0.00 2.83
2764 2785 9.352191 CAAGGATCTCAGAAATATTTGGAGAAT 57.648 33.333 22.97 15.55 38.05 2.40
2873 2896 5.597182 TGTAGTAATGTCATGTACTCCCTCC 59.403 44.000 9.54 0.53 32.79 4.30
2874 2897 4.884961 AGTAATGTCATGTACTCCCTCCT 58.115 43.478 0.00 0.00 0.00 3.69
2961 3000 3.193782 AGCTCTAAAGAAACTGGGGGAT 58.806 45.455 0.00 0.00 0.00 3.85
2993 3032 0.329596 AAGTCATGGTTCTGCCCTCC 59.670 55.000 0.00 0.00 36.04 4.30
3026 3065 8.654215 GCGAACTTAGCTAAACTATTGTTAACT 58.346 33.333 7.74 0.00 34.96 2.24
3065 3232 6.642131 GGTTAACACGAGTAATACAAGTCACA 59.358 38.462 8.10 0.00 0.00 3.58
3111 3278 7.164230 CTCTGTAACAATAGAGGAGTGAACT 57.836 40.000 0.00 0.00 37.39 3.01
3132 3299 5.215069 ACTGATCTATCCAGTTCCTGTGAT 58.785 41.667 0.00 0.00 41.68 3.06
3137 3304 6.566079 TCTATCCAGTTCCTGTGATTGAAT 57.434 37.500 0.00 0.00 29.11 2.57
3205 3372 1.135024 CCCACGGCATGAAAAATGAGG 60.135 52.381 0.00 0.00 0.00 3.86
3206 3373 1.818060 CCACGGCATGAAAAATGAGGA 59.182 47.619 0.00 0.00 0.00 3.71
3207 3374 2.159338 CCACGGCATGAAAAATGAGGAG 60.159 50.000 0.00 0.00 0.00 3.69
3208 3375 2.489329 CACGGCATGAAAAATGAGGAGT 59.511 45.455 0.00 0.00 0.00 3.85
3209 3376 2.489329 ACGGCATGAAAAATGAGGAGTG 59.511 45.455 0.00 0.00 0.00 3.51
3210 3377 2.749076 CGGCATGAAAAATGAGGAGTGA 59.251 45.455 0.00 0.00 0.00 3.41
3211 3378 3.191162 CGGCATGAAAAATGAGGAGTGAA 59.809 43.478 0.00 0.00 0.00 3.18
3212 3379 4.142315 CGGCATGAAAAATGAGGAGTGAAT 60.142 41.667 0.00 0.00 0.00 2.57
3213 3380 5.622914 CGGCATGAAAAATGAGGAGTGAATT 60.623 40.000 0.00 0.00 0.00 2.17
3214 3381 5.579511 GGCATGAAAAATGAGGAGTGAATTG 59.420 40.000 0.00 0.00 0.00 2.32
3215 3382 5.579511 GCATGAAAAATGAGGAGTGAATTGG 59.420 40.000 0.00 0.00 0.00 3.16
3216 3383 5.726980 TGAAAAATGAGGAGTGAATTGGG 57.273 39.130 0.00 0.00 0.00 4.12
3217 3384 5.392995 TGAAAAATGAGGAGTGAATTGGGA 58.607 37.500 0.00 0.00 0.00 4.37
3218 3385 5.837979 TGAAAAATGAGGAGTGAATTGGGAA 59.162 36.000 0.00 0.00 0.00 3.97
3219 3386 6.326064 TGAAAAATGAGGAGTGAATTGGGAAA 59.674 34.615 0.00 0.00 0.00 3.13
3220 3387 6.745794 AAAATGAGGAGTGAATTGGGAAAA 57.254 33.333 0.00 0.00 0.00 2.29
3221 3388 6.745794 AAATGAGGAGTGAATTGGGAAAAA 57.254 33.333 0.00 0.00 0.00 1.94
3222 3389 5.728637 ATGAGGAGTGAATTGGGAAAAAC 57.271 39.130 0.00 0.00 0.00 2.43
3223 3390 3.895041 TGAGGAGTGAATTGGGAAAAACC 59.105 43.478 0.00 0.00 38.08 3.27
3224 3391 3.895041 GAGGAGTGAATTGGGAAAAACCA 59.105 43.478 0.00 0.00 41.20 3.67
3225 3392 3.641436 AGGAGTGAATTGGGAAAAACCAC 59.359 43.478 0.00 0.00 41.03 4.16
3226 3393 3.244078 GGAGTGAATTGGGAAAAACCACC 60.244 47.826 0.00 0.00 41.03 4.61
3227 3394 3.379452 AGTGAATTGGGAAAAACCACCA 58.621 40.909 0.00 0.00 41.03 4.17
3228 3395 3.133901 AGTGAATTGGGAAAAACCACCAC 59.866 43.478 0.00 0.00 41.03 4.16
3229 3396 2.101582 TGAATTGGGAAAAACCACCACG 59.898 45.455 0.00 0.00 41.03 4.94
3230 3397 1.783071 ATTGGGAAAAACCACCACGT 58.217 45.000 0.00 0.00 41.03 4.49
3231 3398 1.558233 TTGGGAAAAACCACCACGTT 58.442 45.000 0.00 0.00 41.03 3.99
3232 3399 0.818296 TGGGAAAAACCACCACGTTG 59.182 50.000 0.00 0.00 41.20 4.10
3233 3400 1.104630 GGGAAAAACCACCACGTTGA 58.895 50.000 0.00 0.00 41.20 3.18
3234 3401 1.477295 GGGAAAAACCACCACGTTGAA 59.523 47.619 0.00 0.00 41.20 2.69
3235 3402 2.480587 GGGAAAAACCACCACGTTGAAG 60.481 50.000 0.00 0.00 41.20 3.02
3236 3403 2.190161 GAAAAACCACCACGTTGAAGC 58.810 47.619 0.00 0.00 0.00 3.86
3237 3404 0.099791 AAAACCACCACGTTGAAGCG 59.900 50.000 0.00 0.00 37.94 4.68
3238 3405 1.027792 AAACCACCACGTTGAAGCGT 61.028 50.000 0.00 0.00 46.88 5.07
3239 3406 0.179078 AACCACCACGTTGAAGCGTA 60.179 50.000 0.00 0.00 43.83 4.42
3240 3407 0.599204 ACCACCACGTTGAAGCGTAG 60.599 55.000 0.00 0.00 43.83 3.51
3241 3408 1.289109 CCACCACGTTGAAGCGTAGG 61.289 60.000 0.00 0.05 43.83 3.18
3242 3409 0.599204 CACCACGTTGAAGCGTAGGT 60.599 55.000 0.00 7.58 43.83 3.08
3252 3419 3.717842 AGCGTAGGTTTGCAGGAAA 57.282 47.368 0.00 0.00 27.67 3.13
3253 3420 1.523758 AGCGTAGGTTTGCAGGAAAG 58.476 50.000 0.00 0.00 27.67 2.62
3254 3421 1.071699 AGCGTAGGTTTGCAGGAAAGA 59.928 47.619 0.00 0.00 27.67 2.52
3255 3422 1.197036 GCGTAGGTTTGCAGGAAAGAC 59.803 52.381 0.00 0.00 0.00 3.01
3256 3423 2.767505 CGTAGGTTTGCAGGAAAGACT 58.232 47.619 0.00 0.00 0.00 3.24
3257 3424 2.737252 CGTAGGTTTGCAGGAAAGACTC 59.263 50.000 0.00 0.00 0.00 3.36
3258 3425 3.555168 CGTAGGTTTGCAGGAAAGACTCT 60.555 47.826 0.00 0.00 0.00 3.24
3259 3426 3.584733 AGGTTTGCAGGAAAGACTCTT 57.415 42.857 0.00 0.00 0.00 2.85
3260 3427 3.481453 AGGTTTGCAGGAAAGACTCTTC 58.519 45.455 0.00 0.00 0.00 2.87
3261 3428 3.137360 AGGTTTGCAGGAAAGACTCTTCT 59.863 43.478 0.00 0.00 0.00 2.85
3262 3429 4.348168 AGGTTTGCAGGAAAGACTCTTCTA 59.652 41.667 0.00 0.00 0.00 2.10
3263 3430 4.452795 GGTTTGCAGGAAAGACTCTTCTAC 59.547 45.833 0.00 0.00 0.00 2.59
3264 3431 3.577649 TGCAGGAAAGACTCTTCTACG 57.422 47.619 0.00 0.00 0.00 3.51
3265 3432 3.154710 TGCAGGAAAGACTCTTCTACGA 58.845 45.455 0.00 0.00 0.00 3.43
3266 3433 3.572682 TGCAGGAAAGACTCTTCTACGAA 59.427 43.478 0.00 0.00 0.00 3.85
3267 3434 4.220821 TGCAGGAAAGACTCTTCTACGAAT 59.779 41.667 0.00 0.00 0.00 3.34
3268 3435 5.172205 GCAGGAAAGACTCTTCTACGAATT 58.828 41.667 0.00 0.00 0.00 2.17
3269 3436 5.639931 GCAGGAAAGACTCTTCTACGAATTT 59.360 40.000 0.00 0.00 0.00 1.82
3270 3437 6.401581 GCAGGAAAGACTCTTCTACGAATTTG 60.402 42.308 0.00 0.00 0.00 2.32
3271 3438 6.647067 CAGGAAAGACTCTTCTACGAATTTGT 59.353 38.462 3.29 3.29 0.00 2.83
3272 3439 6.647067 AGGAAAGACTCTTCTACGAATTTGTG 59.353 38.462 8.70 0.00 0.00 3.33
3273 3440 5.847670 AAGACTCTTCTACGAATTTGTGC 57.152 39.130 8.70 0.00 0.00 4.57
3274 3441 4.246458 AGACTCTTCTACGAATTTGTGCC 58.754 43.478 8.70 0.00 0.00 5.01
3275 3442 3.994392 GACTCTTCTACGAATTTGTGCCA 59.006 43.478 8.70 0.00 0.00 4.92
3276 3443 3.997021 ACTCTTCTACGAATTTGTGCCAG 59.003 43.478 8.70 0.00 0.00 4.85
3277 3444 4.245660 CTCTTCTACGAATTTGTGCCAGA 58.754 43.478 8.70 0.77 0.00 3.86
3278 3445 4.637276 TCTTCTACGAATTTGTGCCAGAA 58.363 39.130 8.70 8.62 0.00 3.02
3279 3446 5.060506 TCTTCTACGAATTTGTGCCAGAAA 58.939 37.500 8.70 0.00 0.00 2.52
3280 3447 5.529430 TCTTCTACGAATTTGTGCCAGAAAA 59.471 36.000 8.70 0.00 0.00 2.29
3281 3448 5.103290 TCTACGAATTTGTGCCAGAAAAC 57.897 39.130 8.70 0.00 0.00 2.43
3282 3449 3.791973 ACGAATTTGTGCCAGAAAACA 57.208 38.095 0.00 0.00 0.00 2.83
3283 3450 3.443976 ACGAATTTGTGCCAGAAAACAC 58.556 40.909 0.00 0.00 37.31 3.32
3284 3451 3.130340 ACGAATTTGTGCCAGAAAACACT 59.870 39.130 0.00 0.00 37.68 3.55
3285 3452 3.486841 CGAATTTGTGCCAGAAAACACTG 59.513 43.478 0.00 0.00 37.68 3.66
3286 3453 4.681744 GAATTTGTGCCAGAAAACACTGA 58.318 39.130 0.00 0.00 39.94 3.41
3287 3454 4.942761 ATTTGTGCCAGAAAACACTGAT 57.057 36.364 0.00 0.00 39.94 2.90
3288 3455 4.734398 TTTGTGCCAGAAAACACTGATT 57.266 36.364 0.00 0.00 39.94 2.57
3289 3456 4.734398 TTGTGCCAGAAAACACTGATTT 57.266 36.364 0.00 0.00 39.94 2.17
3290 3457 4.734398 TGTGCCAGAAAACACTGATTTT 57.266 36.364 0.00 0.00 39.94 1.82
3291 3458 5.843673 TGTGCCAGAAAACACTGATTTTA 57.156 34.783 0.00 0.00 39.94 1.52
3292 3459 5.830912 TGTGCCAGAAAACACTGATTTTAG 58.169 37.500 0.00 0.00 39.94 1.85
3293 3460 5.359576 TGTGCCAGAAAACACTGATTTTAGT 59.640 36.000 0.00 0.00 39.94 2.24
3294 3461 5.915196 GTGCCAGAAAACACTGATTTTAGTC 59.085 40.000 0.00 0.00 39.94 2.59
3295 3462 5.009610 TGCCAGAAAACACTGATTTTAGTCC 59.990 40.000 0.00 0.00 39.94 3.85
3296 3463 5.241728 GCCAGAAAACACTGATTTTAGTCCT 59.758 40.000 0.00 0.00 39.94 3.85
3297 3464 6.430000 GCCAGAAAACACTGATTTTAGTCCTA 59.570 38.462 0.00 0.00 39.94 2.94
3298 3465 7.040686 GCCAGAAAACACTGATTTTAGTCCTAA 60.041 37.037 0.00 0.00 39.94 2.69
3299 3466 9.014297 CCAGAAAACACTGATTTTAGTCCTAAT 57.986 33.333 0.00 0.00 39.94 1.73
3306 3473 8.515414 ACACTGATTTTAGTCCTAATCTTTTGC 58.485 33.333 0.00 0.00 33.08 3.68
3307 3474 8.514594 CACTGATTTTAGTCCTAATCTTTTGCA 58.485 33.333 0.00 0.00 33.08 4.08
3308 3475 9.077885 ACTGATTTTAGTCCTAATCTTTTGCAA 57.922 29.630 0.00 0.00 33.08 4.08
3309 3476 9.912634 CTGATTTTAGTCCTAATCTTTTGCAAA 57.087 29.630 8.05 8.05 33.08 3.68
3330 3497 4.974368 AAAACACTGATCAACCGTTTCA 57.026 36.364 13.96 0.00 0.00 2.69
3331 3498 5.514274 AAAACACTGATCAACCGTTTCAT 57.486 34.783 13.96 1.87 0.00 2.57
3332 3499 4.488126 AACACTGATCAACCGTTTCATG 57.512 40.909 0.00 0.00 0.00 3.07
3333 3500 2.226437 ACACTGATCAACCGTTTCATGC 59.774 45.455 0.00 0.00 0.00 4.06
3334 3501 2.226200 CACTGATCAACCGTTTCATGCA 59.774 45.455 0.00 0.00 0.00 3.96
3335 3502 3.084039 ACTGATCAACCGTTTCATGCAT 58.916 40.909 0.00 0.00 0.00 3.96
3336 3503 3.507233 ACTGATCAACCGTTTCATGCATT 59.493 39.130 0.00 0.00 0.00 3.56
3337 3504 4.022068 ACTGATCAACCGTTTCATGCATTT 60.022 37.500 0.00 0.00 0.00 2.32
3338 3505 4.880759 TGATCAACCGTTTCATGCATTTT 58.119 34.783 0.00 0.00 0.00 1.82
3339 3506 6.018589 TGATCAACCGTTTCATGCATTTTA 57.981 33.333 0.00 0.00 0.00 1.52
3340 3507 6.450545 TGATCAACCGTTTCATGCATTTTAA 58.549 32.000 0.00 0.00 0.00 1.52
3341 3508 6.364706 TGATCAACCGTTTCATGCATTTTAAC 59.635 34.615 0.00 0.78 0.00 2.01
3342 3509 4.985409 TCAACCGTTTCATGCATTTTAACC 59.015 37.500 0.00 0.00 0.00 2.85
3343 3510 4.864704 ACCGTTTCATGCATTTTAACCT 57.135 36.364 0.00 0.00 0.00 3.50
3344 3511 4.805219 ACCGTTTCATGCATTTTAACCTC 58.195 39.130 0.00 0.00 0.00 3.85
3345 3512 3.851403 CCGTTTCATGCATTTTAACCTCG 59.149 43.478 0.00 0.00 0.00 4.63
3346 3513 4.378978 CCGTTTCATGCATTTTAACCTCGA 60.379 41.667 0.00 0.00 0.00 4.04
3347 3514 5.331902 CGTTTCATGCATTTTAACCTCGAT 58.668 37.500 0.00 0.00 0.00 3.59
3348 3515 5.799936 CGTTTCATGCATTTTAACCTCGATT 59.200 36.000 0.00 0.00 0.00 3.34
3349 3516 6.964370 CGTTTCATGCATTTTAACCTCGATTA 59.036 34.615 0.00 0.00 0.00 1.75
3350 3517 7.643764 CGTTTCATGCATTTTAACCTCGATTAT 59.356 33.333 0.00 0.00 0.00 1.28
3351 3518 8.745837 GTTTCATGCATTTTAACCTCGATTATG 58.254 33.333 0.00 0.00 0.00 1.90
3352 3519 7.800155 TCATGCATTTTAACCTCGATTATGA 57.200 32.000 0.00 0.00 0.00 2.15
3353 3520 7.639039 TCATGCATTTTAACCTCGATTATGAC 58.361 34.615 0.00 0.00 0.00 3.06
3354 3521 6.993786 TGCATTTTAACCTCGATTATGACA 57.006 33.333 0.00 0.00 0.00 3.58
3355 3522 7.566760 TGCATTTTAACCTCGATTATGACAT 57.433 32.000 0.00 0.00 0.00 3.06
3356 3523 7.416817 TGCATTTTAACCTCGATTATGACATG 58.583 34.615 0.00 0.00 0.00 3.21
3357 3524 7.066887 TGCATTTTAACCTCGATTATGACATGT 59.933 33.333 0.00 0.00 0.00 3.21
3358 3525 7.376866 GCATTTTAACCTCGATTATGACATGTG 59.623 37.037 1.15 0.00 0.00 3.21
3359 3526 6.918892 TTTAACCTCGATTATGACATGTGG 57.081 37.500 1.15 0.00 0.00 4.17
3360 3527 3.475566 ACCTCGATTATGACATGTGGG 57.524 47.619 1.15 0.00 0.00 4.61
3361 3528 2.104792 ACCTCGATTATGACATGTGGGG 59.895 50.000 1.15 0.00 0.00 4.96
3362 3529 2.146342 CTCGATTATGACATGTGGGGC 58.854 52.381 1.15 0.00 0.00 5.80
3363 3530 1.202758 TCGATTATGACATGTGGGGCC 60.203 52.381 1.15 0.00 0.00 5.80
3364 3531 1.476652 CGATTATGACATGTGGGGCCA 60.477 52.381 1.15 0.00 0.00 5.36
3365 3532 2.815215 CGATTATGACATGTGGGGCCAT 60.815 50.000 1.15 2.28 0.00 4.40
3366 3533 2.070305 TTATGACATGTGGGGCCATG 57.930 50.000 1.15 2.88 46.14 3.66
3367 3534 0.185658 TATGACATGTGGGGCCATGG 59.814 55.000 7.63 7.63 45.21 3.66
3368 3535 1.877672 ATGACATGTGGGGCCATGGT 61.878 55.000 14.67 0.00 45.21 3.55
3369 3536 1.210885 TGACATGTGGGGCCATGGTA 61.211 55.000 14.67 0.00 45.21 3.25
3370 3537 0.185901 GACATGTGGGGCCATGGTAT 59.814 55.000 14.67 0.00 45.21 2.73
3371 3538 0.636101 ACATGTGGGGCCATGGTATT 59.364 50.000 14.67 0.00 45.21 1.89
3372 3539 1.008206 ACATGTGGGGCCATGGTATTT 59.992 47.619 14.67 0.00 45.21 1.40
3373 3540 2.117865 CATGTGGGGCCATGGTATTTT 58.882 47.619 14.67 0.00 38.83 1.82
3374 3541 2.334006 TGTGGGGCCATGGTATTTTT 57.666 45.000 14.67 0.00 0.00 1.94
3375 3542 1.905215 TGTGGGGCCATGGTATTTTTG 59.095 47.619 14.67 0.00 0.00 2.44
3376 3543 0.908198 TGGGGCCATGGTATTTTTGC 59.092 50.000 14.67 0.00 0.00 3.68
3377 3544 0.908198 GGGGCCATGGTATTTTTGCA 59.092 50.000 14.67 0.00 0.00 4.08
3378 3545 1.490069 GGGGCCATGGTATTTTTGCAT 59.510 47.619 14.67 0.00 0.00 3.96
3379 3546 2.703007 GGGGCCATGGTATTTTTGCATA 59.297 45.455 14.67 0.00 0.00 3.14
3380 3547 3.244181 GGGGCCATGGTATTTTTGCATAG 60.244 47.826 14.67 0.00 0.00 2.23
3381 3548 3.387699 GGGCCATGGTATTTTTGCATAGT 59.612 43.478 14.67 0.00 0.00 2.12
3382 3549 4.501400 GGGCCATGGTATTTTTGCATAGTC 60.501 45.833 14.67 0.00 0.00 2.59
3383 3550 4.099266 GGCCATGGTATTTTTGCATAGTCA 59.901 41.667 14.67 0.00 0.00 3.41
3384 3551 5.043248 GCCATGGTATTTTTGCATAGTCAC 58.957 41.667 14.67 0.00 0.00 3.67
3385 3552 5.591099 CCATGGTATTTTTGCATAGTCACC 58.409 41.667 2.57 0.00 0.00 4.02
3386 3553 5.451798 CCATGGTATTTTTGCATAGTCACCC 60.452 44.000 2.57 0.00 0.00 4.61
3387 3554 4.929479 TGGTATTTTTGCATAGTCACCCT 58.071 39.130 0.00 0.00 0.00 4.34
3388 3555 5.329399 TGGTATTTTTGCATAGTCACCCTT 58.671 37.500 0.00 0.00 0.00 3.95
3389 3556 5.417580 TGGTATTTTTGCATAGTCACCCTTC 59.582 40.000 0.00 0.00 0.00 3.46
3390 3557 4.701956 ATTTTTGCATAGTCACCCTTCG 57.298 40.909 0.00 0.00 0.00 3.79
3391 3558 2.107950 TTTGCATAGTCACCCTTCGG 57.892 50.000 0.00 0.00 0.00 4.30
3392 3559 1.271856 TTGCATAGTCACCCTTCGGA 58.728 50.000 0.00 0.00 0.00 4.55
3393 3560 1.496060 TGCATAGTCACCCTTCGGAT 58.504 50.000 0.00 0.00 0.00 4.18
3394 3561 2.673258 TGCATAGTCACCCTTCGGATA 58.327 47.619 0.00 0.00 0.00 2.59
3395 3562 3.035363 TGCATAGTCACCCTTCGGATAA 58.965 45.455 0.00 0.00 0.00 1.75
3396 3563 3.452990 TGCATAGTCACCCTTCGGATAAA 59.547 43.478 0.00 0.00 0.00 1.40
3397 3564 4.080807 TGCATAGTCACCCTTCGGATAAAA 60.081 41.667 0.00 0.00 0.00 1.52
3398 3565 4.511826 GCATAGTCACCCTTCGGATAAAAG 59.488 45.833 0.00 0.00 0.00 2.27
3399 3566 5.671493 CATAGTCACCCTTCGGATAAAAGT 58.329 41.667 0.00 0.00 0.00 2.66
3400 3567 6.684613 GCATAGTCACCCTTCGGATAAAAGTA 60.685 42.308 0.00 0.00 0.00 2.24
3401 3568 5.082251 AGTCACCCTTCGGATAAAAGTAC 57.918 43.478 0.00 0.00 0.00 2.73
3402 3569 4.529377 AGTCACCCTTCGGATAAAAGTACA 59.471 41.667 0.00 0.00 0.00 2.90
3403 3570 5.012354 AGTCACCCTTCGGATAAAAGTACAA 59.988 40.000 0.00 0.00 0.00 2.41
3404 3571 5.702209 GTCACCCTTCGGATAAAAGTACAAA 59.298 40.000 0.00 0.00 0.00 2.83
3405 3572 6.205270 GTCACCCTTCGGATAAAAGTACAAAA 59.795 38.462 0.00 0.00 0.00 2.44
3406 3573 6.205270 TCACCCTTCGGATAAAAGTACAAAAC 59.795 38.462 0.00 0.00 0.00 2.43
3407 3574 5.179929 ACCCTTCGGATAAAAGTACAAAACG 59.820 40.000 0.00 0.00 0.00 3.60
3408 3575 5.084055 CCTTCGGATAAAAGTACAAAACGC 58.916 41.667 0.00 0.00 0.00 4.84
3409 3576 5.334260 CCTTCGGATAAAAGTACAAAACGCA 60.334 40.000 0.00 0.00 0.00 5.24
3410 3577 5.670149 TCGGATAAAAGTACAAAACGCAA 57.330 34.783 0.00 0.00 0.00 4.85
3411 3578 6.243811 TCGGATAAAAGTACAAAACGCAAT 57.756 33.333 0.00 0.00 0.00 3.56
3412 3579 6.308675 TCGGATAAAAGTACAAAACGCAATC 58.691 36.000 0.00 0.00 0.00 2.67
3413 3580 6.073167 TCGGATAAAAGTACAAAACGCAATCA 60.073 34.615 0.00 0.00 0.00 2.57
3414 3581 6.248420 CGGATAAAAGTACAAAACGCAATCAG 59.752 38.462 0.00 0.00 0.00 2.90
3415 3582 6.033513 GGATAAAAGTACAAAACGCAATCAGC 59.966 38.462 0.00 0.00 40.87 4.26
3416 3583 4.568152 AAAGTACAAAACGCAATCAGCT 57.432 36.364 0.00 0.00 42.61 4.24
3417 3584 3.813529 AGTACAAAACGCAATCAGCTC 57.186 42.857 0.00 0.00 42.61 4.09
3418 3585 2.484264 AGTACAAAACGCAATCAGCTCC 59.516 45.455 0.00 0.00 42.61 4.70
3419 3586 1.609208 ACAAAACGCAATCAGCTCCT 58.391 45.000 0.00 0.00 42.61 3.69
3420 3587 1.956477 ACAAAACGCAATCAGCTCCTT 59.044 42.857 0.00 0.00 42.61 3.36
3421 3588 2.287788 ACAAAACGCAATCAGCTCCTTG 60.288 45.455 1.20 1.20 42.61 3.61
3422 3589 1.609208 AAACGCAATCAGCTCCTTGT 58.391 45.000 6.64 0.00 42.61 3.16
3423 3590 1.160137 AACGCAATCAGCTCCTTGTC 58.840 50.000 6.64 0.17 42.61 3.18
3424 3591 1.016130 ACGCAATCAGCTCCTTGTCG 61.016 55.000 14.39 14.39 42.61 4.35
3425 3592 1.427020 GCAATCAGCTCCTTGTCGC 59.573 57.895 6.64 0.00 41.15 5.19
3426 3593 1.986575 GCAATCAGCTCCTTGTCGCC 61.987 60.000 6.64 0.00 41.15 5.54
3427 3594 1.448540 AATCAGCTCCTTGTCGCCG 60.449 57.895 0.00 0.00 0.00 6.46
3428 3595 2.859273 AATCAGCTCCTTGTCGCCGG 62.859 60.000 0.00 0.00 0.00 6.13
3446 3613 2.895865 CCTGCAGCAGAGGCATCG 60.896 66.667 24.90 0.68 44.61 3.84
3447 3614 2.895865 CTGCAGCAGAGGCATCGG 60.896 66.667 18.42 0.00 44.61 4.18
3453 3620 4.519437 CAGAGGCATCGGCGCTCA 62.519 66.667 7.64 0.00 42.47 4.26
3454 3621 3.544607 AGAGGCATCGGCGCTCAT 61.545 61.111 7.64 0.00 42.47 2.90
3455 3622 3.344215 GAGGCATCGGCGCTCATG 61.344 66.667 7.64 11.05 42.47 3.07
3456 3623 4.923942 AGGCATCGGCGCTCATGG 62.924 66.667 7.64 0.00 42.47 3.66
3458 3625 3.643978 GCATCGGCGCTCATGGTC 61.644 66.667 7.64 0.00 0.00 4.02
3459 3626 2.969238 CATCGGCGCTCATGGTCC 60.969 66.667 7.64 0.00 0.00 4.46
3460 3627 3.157252 ATCGGCGCTCATGGTCCT 61.157 61.111 7.64 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
738 742 0.886490 AAGGCTCTGCACTTGGAACG 60.886 55.000 0.00 0.00 0.00 3.95
778 782 2.154462 CTCTTCGCATTCCAAGGTGTT 58.846 47.619 0.00 0.00 0.00 3.32
779 783 1.813513 CTCTTCGCATTCCAAGGTGT 58.186 50.000 0.00 0.00 0.00 4.16
871 875 9.422681 ACCAAACTGATACTGATAGTATACACT 57.577 33.333 5.50 0.00 41.21 3.55
877 881 9.817809 GAATTCACCAAACTGATACTGATAGTA 57.182 33.333 0.00 0.00 34.82 1.82
948 952 6.751425 CAGTAAGATCAGATTCAGAGTCACAC 59.249 42.308 0.00 0.00 0.00 3.82
1159 1166 1.656652 CGTTCCGCTCCTTCATCATT 58.343 50.000 0.00 0.00 0.00 2.57
1218 1225 7.953005 TTGCTCCATATCCAAACAATTTAGA 57.047 32.000 0.00 0.00 0.00 2.10
1261 1268 1.074405 TGCTCTTTGAAGCTCCACCAT 59.926 47.619 0.00 0.00 42.94 3.55
1315 1322 2.816087 CAGCAGCTTGTAGGTCAATTGT 59.184 45.455 5.13 0.00 35.35 2.71
1373 1380 3.347216 CAAATCGAAGGGACCTGAACAT 58.653 45.455 0.00 0.00 0.00 2.71
1389 1396 3.253230 GTTATGCCTTGGTGTGCAAATC 58.747 45.455 0.00 0.00 41.50 2.17
1570 1577 3.484177 GAGCTGATCGAAAGCGCGC 62.484 63.158 26.66 26.66 45.59 6.86
1598 1605 4.319177 ACAAGAGTTCCTGTACTTCATGC 58.681 43.478 0.00 0.00 0.00 4.06
1643 1662 5.431765 AGTGACTATCATCCATTTCACCAC 58.568 41.667 0.00 0.00 35.06 4.16
1655 1674 3.014623 TCGTCGTCCAAGTGACTATCAT 58.985 45.455 0.00 0.00 42.13 2.45
1656 1675 2.429478 TCGTCGTCCAAGTGACTATCA 58.571 47.619 0.00 0.00 42.13 2.15
1667 1686 2.153547 TTGCTCAGCATCGTCGTCCA 62.154 55.000 0.00 0.00 38.76 4.02
1700 1719 3.153919 TCCAGCGAACCAAATAGCTTTT 58.846 40.909 0.00 0.00 37.94 2.27
1701 1720 2.790433 TCCAGCGAACCAAATAGCTTT 58.210 42.857 0.00 0.00 37.94 3.51
1731 1750 6.317391 CACTTAGGATTTTCATCTCTTCACCC 59.683 42.308 0.00 0.00 0.00 4.61
1749 1768 2.083774 TCTGAAATTGCGGCACTTAGG 58.916 47.619 0.05 0.00 0.00 2.69
1785 1804 3.059044 CGTCTGTTTCACGATTTACCTCG 59.941 47.826 0.00 0.00 44.14 4.63
1796 1815 3.869246 TCTGTTTCCTTCGTCTGTTTCAC 59.131 43.478 0.00 0.00 0.00 3.18
1859 1878 2.267426 CGTGCGGTTCAGAATCATGTA 58.733 47.619 0.00 0.00 0.00 2.29
2016 2035 3.799420 GCATCCACGAGTCTGAAGATAAC 59.201 47.826 0.00 0.00 0.00 1.89
2025 2044 1.153289 GGCATGCATCCACGAGTCT 60.153 57.895 21.36 0.00 0.00 3.24
2051 2070 3.438297 TCAATTCCTCGATCGAACTCC 57.562 47.619 19.92 0.00 0.00 3.85
2136 2155 2.159824 GTCTCGAATCGACTCACTGTGA 59.840 50.000 10.50 10.50 0.00 3.58
2178 2197 2.426024 TGAACTCTGCTCGTATACCACC 59.574 50.000 0.00 0.00 0.00 4.61
2201 2220 2.743928 CTCCTGCGGTTGACAGCC 60.744 66.667 0.00 0.00 36.20 4.85
2263 2282 2.349886 CAGGAAGCTCGTCACAATAAGC 59.650 50.000 0.00 0.00 34.95 3.09
2337 2356 2.125912 TGCGCCTCTTCTTCGAGC 60.126 61.111 4.18 0.00 0.00 5.03
2388 2407 3.822735 CCACTTGACACAATCCATCTTGT 59.177 43.478 0.00 0.00 39.91 3.16
2420 2439 3.795150 GCGATCTAGAGAAAGCTCCACTG 60.795 52.174 0.00 0.00 42.30 3.66
2468 2487 4.987285 ACTTTATAGCTGTCAGATGCATCG 59.013 41.667 20.67 15.25 0.00 3.84
2523 2542 3.181476 GCAAACCTCACACACCTTCATTT 60.181 43.478 0.00 0.00 0.00 2.32
2561 2580 4.841443 TCTACAAGTAGCTGAACGAACA 57.159 40.909 0.00 0.00 33.32 3.18
2585 2606 3.228453 TGGAACGGAGGGAGTATATGTC 58.772 50.000 0.00 0.00 0.00 3.06
2593 2614 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2594 2615 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2595 2616 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2596 2617 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2597 2618 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2598 2619 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2599 2620 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2600 2621 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2601 2622 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
2602 2623 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
2603 2624 9.739276 ATACAAAGTTGAGTCATCTATTTTGGA 57.261 29.630 14.35 9.09 40.00 3.53
2641 2662 9.893305 CCGTTTTAAAATAGATGACTCAACTTT 57.107 29.630 3.52 0.00 0.00 2.66
2642 2663 9.280174 TCCGTTTTAAAATAGATGACTCAACTT 57.720 29.630 3.52 0.00 0.00 2.66
2643 2664 8.842358 TCCGTTTTAAAATAGATGACTCAACT 57.158 30.769 3.52 0.00 0.00 3.16
2644 2665 8.175716 CCTCCGTTTTAAAATAGATGACTCAAC 58.824 37.037 3.52 0.00 0.00 3.18
2645 2666 7.335924 CCCTCCGTTTTAAAATAGATGACTCAA 59.664 37.037 3.52 0.00 0.00 3.02
2646 2667 6.821665 CCCTCCGTTTTAAAATAGATGACTCA 59.178 38.462 3.52 0.00 0.00 3.41
2647 2668 7.046033 TCCCTCCGTTTTAAAATAGATGACTC 58.954 38.462 3.52 0.00 0.00 3.36
2648 2669 6.954232 TCCCTCCGTTTTAAAATAGATGACT 58.046 36.000 3.52 0.00 0.00 3.41
2649 2670 6.822170 ACTCCCTCCGTTTTAAAATAGATGAC 59.178 38.462 3.52 0.00 0.00 3.06
2650 2671 6.954232 ACTCCCTCCGTTTTAAAATAGATGA 58.046 36.000 3.52 3.96 0.00 2.92
2651 2672 8.904099 ATACTCCCTCCGTTTTAAAATAGATG 57.096 34.615 3.52 2.01 0.00 2.90
2653 2674 9.991906 CATATACTCCCTCCGTTTTAAAATAGA 57.008 33.333 3.52 3.61 0.00 1.98
2654 2675 9.774413 ACATATACTCCCTCCGTTTTAAAATAG 57.226 33.333 3.52 1.99 0.00 1.73
2655 2676 9.550406 CACATATACTCCCTCCGTTTTAAAATA 57.450 33.333 3.52 0.00 0.00 1.40
2656 2677 8.050930 ACACATATACTCCCTCCGTTTTAAAAT 58.949 33.333 3.52 0.00 0.00 1.82
2657 2678 7.396418 ACACATATACTCCCTCCGTTTTAAAA 58.604 34.615 0.00 0.00 0.00 1.52
2658 2679 6.949715 ACACATATACTCCCTCCGTTTTAAA 58.050 36.000 0.00 0.00 0.00 1.52
2659 2680 6.549433 ACACATATACTCCCTCCGTTTTAA 57.451 37.500 0.00 0.00 0.00 1.52
2660 2681 6.549433 AACACATATACTCCCTCCGTTTTA 57.451 37.500 0.00 0.00 0.00 1.52
2661 2682 5.431179 AACACATATACTCCCTCCGTTTT 57.569 39.130 0.00 0.00 0.00 2.43
2662 2683 5.431179 AAACACATATACTCCCTCCGTTT 57.569 39.130 0.00 0.00 0.00 3.60
2663 2684 5.183228 CAAAACACATATACTCCCTCCGTT 58.817 41.667 0.00 0.00 0.00 4.44
2664 2685 4.224370 ACAAAACACATATACTCCCTCCGT 59.776 41.667 0.00 0.00 0.00 4.69
2665 2686 4.766375 ACAAAACACATATACTCCCTCCG 58.234 43.478 0.00 0.00 0.00 4.63
2666 2687 7.120923 TCTACAAAACACATATACTCCCTCC 57.879 40.000 0.00 0.00 0.00 4.30
2667 2688 7.147707 ACCTCTACAAAACACATATACTCCCTC 60.148 40.741 0.00 0.00 0.00 4.30
2668 2689 6.672657 ACCTCTACAAAACACATATACTCCCT 59.327 38.462 0.00 0.00 0.00 4.20
2669 2690 6.885922 ACCTCTACAAAACACATATACTCCC 58.114 40.000 0.00 0.00 0.00 4.30
2670 2691 8.788325 AAACCTCTACAAAACACATATACTCC 57.212 34.615 0.00 0.00 0.00 3.85
2671 2692 9.431887 TGAAACCTCTACAAAACACATATACTC 57.568 33.333 0.00 0.00 0.00 2.59
2672 2693 9.787435 TTGAAACCTCTACAAAACACATATACT 57.213 29.630 0.00 0.00 0.00 2.12
2675 2696 9.965824 CTTTTGAAACCTCTACAAAACACATAT 57.034 29.630 0.00 0.00 38.17 1.78
2732 2753 9.781633 CAAATATTTCTGAGATCCTTGAGAGAT 57.218 33.333 0.00 0.00 0.00 2.75
2743 2764 9.298250 CCATCATTCTCCAAATATTTCTGAGAT 57.702 33.333 19.98 11.88 32.54 2.75
2745 2766 8.687292 TCCATCATTCTCCAAATATTTCTGAG 57.313 34.615 14.22 14.22 0.00 3.35
2764 2785 4.980339 ACATAGCCATGTACATCCATCA 57.020 40.909 5.07 0.00 43.74 3.07
2821 2843 9.694137 ACTGACAGTTAGAGTTATACAAGAAAC 57.306 33.333 1.07 0.00 0.00 2.78
2832 2854 9.477484 CATTACTACAAACTGACAGTTAGAGTT 57.523 33.333 23.80 12.84 37.47 3.01
2899 2935 6.949352 ATGGCCAAATGACTTGAGTAATAG 57.051 37.500 10.96 0.00 37.17 1.73
2914 2953 3.831333 TCAAGCTGATTGTAATGGCCAAA 59.169 39.130 10.96 0.00 40.05 3.28
2961 3000 0.768622 ATGACTTGGGTTGGTTCGGA 59.231 50.000 0.00 0.00 0.00 4.55
2993 3032 1.609932 TAGCTAAGTTCGCGACAACG 58.390 50.000 9.15 0.00 42.93 4.10
3026 3065 6.676950 TCGTGTTAACCGTACTCAGAATAAA 58.323 36.000 13.67 0.00 0.00 1.40
3132 3299 5.771153 TCATTGCAGTCAAGTTGATTCAA 57.229 34.783 9.18 12.99 35.37 2.69
3137 3304 3.753815 TCCATCATTGCAGTCAAGTTGA 58.246 40.909 0.08 0.08 35.37 3.18
3205 3372 3.386402 TGGTGGTTTTTCCCAATTCACTC 59.614 43.478 0.00 0.00 35.92 3.51
3206 3373 3.133901 GTGGTGGTTTTTCCCAATTCACT 59.866 43.478 0.00 0.00 35.92 3.41
3207 3374 3.462982 GTGGTGGTTTTTCCCAATTCAC 58.537 45.455 0.00 0.00 35.92 3.18
3208 3375 2.101582 CGTGGTGGTTTTTCCCAATTCA 59.898 45.455 0.00 0.00 35.92 2.57
3209 3376 2.101750 ACGTGGTGGTTTTTCCCAATTC 59.898 45.455 0.00 0.00 35.92 2.17
3210 3377 2.112190 ACGTGGTGGTTTTTCCCAATT 58.888 42.857 0.00 0.00 35.92 2.32
3211 3378 1.783071 ACGTGGTGGTTTTTCCCAAT 58.217 45.000 0.00 0.00 35.92 3.16
3212 3379 1.204941 CAACGTGGTGGTTTTTCCCAA 59.795 47.619 0.00 0.00 35.92 4.12
3213 3380 0.818296 CAACGTGGTGGTTTTTCCCA 59.182 50.000 0.00 0.00 34.77 4.37
3214 3381 1.104630 TCAACGTGGTGGTTTTTCCC 58.895 50.000 0.00 0.00 34.77 3.97
3215 3382 2.804647 CTTCAACGTGGTGGTTTTTCC 58.195 47.619 0.00 0.00 0.00 3.13
3216 3383 2.190161 GCTTCAACGTGGTGGTTTTTC 58.810 47.619 0.00 0.00 0.00 2.29
3217 3384 1.468395 CGCTTCAACGTGGTGGTTTTT 60.468 47.619 0.00 0.00 0.00 1.94
3218 3385 0.099791 CGCTTCAACGTGGTGGTTTT 59.900 50.000 0.00 0.00 0.00 2.43
3219 3386 1.027792 ACGCTTCAACGTGGTGGTTT 61.028 50.000 0.00 0.00 46.28 3.27
3220 3387 1.450669 ACGCTTCAACGTGGTGGTT 60.451 52.632 0.00 0.00 46.28 3.67
3221 3388 2.188469 ACGCTTCAACGTGGTGGT 59.812 55.556 0.00 0.00 46.28 4.16
3228 3395 0.584396 TGCAAACCTACGCTTCAACG 59.416 50.000 0.00 0.00 39.50 4.10
3229 3396 1.069227 CCTGCAAACCTACGCTTCAAC 60.069 52.381 0.00 0.00 0.00 3.18
3230 3397 1.202710 TCCTGCAAACCTACGCTTCAA 60.203 47.619 0.00 0.00 0.00 2.69
3231 3398 0.394938 TCCTGCAAACCTACGCTTCA 59.605 50.000 0.00 0.00 0.00 3.02
3232 3399 1.519408 TTCCTGCAAACCTACGCTTC 58.481 50.000 0.00 0.00 0.00 3.86
3233 3400 1.880027 CTTTCCTGCAAACCTACGCTT 59.120 47.619 0.00 0.00 0.00 4.68
3234 3401 1.071699 TCTTTCCTGCAAACCTACGCT 59.928 47.619 0.00 0.00 0.00 5.07
3235 3402 1.197036 GTCTTTCCTGCAAACCTACGC 59.803 52.381 0.00 0.00 0.00 4.42
3236 3403 2.737252 GAGTCTTTCCTGCAAACCTACG 59.263 50.000 0.00 0.00 0.00 3.51
3237 3404 4.009370 AGAGTCTTTCCTGCAAACCTAC 57.991 45.455 0.00 0.00 0.00 3.18
3238 3405 4.348168 AGAAGAGTCTTTCCTGCAAACCTA 59.652 41.667 6.88 0.00 0.00 3.08
3239 3406 3.137360 AGAAGAGTCTTTCCTGCAAACCT 59.863 43.478 6.88 0.00 0.00 3.50
3240 3407 3.481453 AGAAGAGTCTTTCCTGCAAACC 58.519 45.455 6.88 0.00 0.00 3.27
3241 3408 4.150804 CGTAGAAGAGTCTTTCCTGCAAAC 59.849 45.833 6.88 0.00 35.12 2.93
3242 3409 4.038763 TCGTAGAAGAGTCTTTCCTGCAAA 59.961 41.667 6.88 0.00 35.12 3.68
3243 3410 3.572682 TCGTAGAAGAGTCTTTCCTGCAA 59.427 43.478 6.88 0.00 35.12 4.08
3244 3411 3.154710 TCGTAGAAGAGTCTTTCCTGCA 58.845 45.455 6.88 0.00 35.12 4.41
3245 3412 3.851976 TCGTAGAAGAGTCTTTCCTGC 57.148 47.619 6.88 3.42 35.12 4.85
3246 3413 6.647067 ACAAATTCGTAGAAGAGTCTTTCCTG 59.353 38.462 6.88 0.00 45.90 3.86
3247 3414 6.647067 CACAAATTCGTAGAAGAGTCTTTCCT 59.353 38.462 6.88 3.10 45.90 3.36
3248 3415 6.618805 GCACAAATTCGTAGAAGAGTCTTTCC 60.619 42.308 6.88 0.00 45.90 3.13
3249 3416 6.300356 GCACAAATTCGTAGAAGAGTCTTTC 58.700 40.000 6.88 0.75 45.90 2.62
3250 3417 5.179555 GGCACAAATTCGTAGAAGAGTCTTT 59.820 40.000 6.88 0.15 45.90 2.52
3251 3418 4.691216 GGCACAAATTCGTAGAAGAGTCTT 59.309 41.667 4.68 4.68 45.90 3.01
3252 3419 4.246458 GGCACAAATTCGTAGAAGAGTCT 58.754 43.478 0.00 0.00 45.90 3.24
3253 3420 3.994392 TGGCACAAATTCGTAGAAGAGTC 59.006 43.478 0.00 0.00 37.14 3.36
3254 3421 3.997021 CTGGCACAAATTCGTAGAAGAGT 59.003 43.478 0.00 0.00 39.88 3.24
3255 3422 4.245660 TCTGGCACAAATTCGTAGAAGAG 58.754 43.478 0.00 0.00 39.88 2.85
3256 3423 4.265904 TCTGGCACAAATTCGTAGAAGA 57.734 40.909 0.00 0.00 39.88 2.87
3257 3424 5.356882 TTTCTGGCACAAATTCGTAGAAG 57.643 39.130 0.00 0.00 39.88 2.85
3258 3425 5.066634 TGTTTTCTGGCACAAATTCGTAGAA 59.933 36.000 0.00 0.00 39.88 2.10
3259 3426 4.576873 TGTTTTCTGGCACAAATTCGTAGA 59.423 37.500 0.00 0.00 38.70 2.59
3260 3427 4.675114 GTGTTTTCTGGCACAAATTCGTAG 59.325 41.667 0.00 0.00 38.70 3.51
3261 3428 4.336993 AGTGTTTTCTGGCACAAATTCGTA 59.663 37.500 0.00 0.00 38.70 3.43
3262 3429 3.130340 AGTGTTTTCTGGCACAAATTCGT 59.870 39.130 0.00 0.00 38.70 3.85
3263 3430 3.486841 CAGTGTTTTCTGGCACAAATTCG 59.513 43.478 0.00 0.00 38.70 3.34
3264 3431 4.681744 TCAGTGTTTTCTGGCACAAATTC 58.318 39.130 0.00 0.00 38.70 2.17
3265 3432 4.734398 TCAGTGTTTTCTGGCACAAATT 57.266 36.364 0.00 0.00 38.70 1.82
3266 3433 4.942761 ATCAGTGTTTTCTGGCACAAAT 57.057 36.364 0.00 0.00 38.70 2.32
3267 3434 4.734398 AATCAGTGTTTTCTGGCACAAA 57.266 36.364 0.00 0.00 38.70 2.83
3268 3435 4.734398 AAATCAGTGTTTTCTGGCACAA 57.266 36.364 0.00 0.00 38.70 3.33
3269 3436 4.734398 AAAATCAGTGTTTTCTGGCACA 57.266 36.364 0.00 0.00 38.02 4.57
3270 3437 5.831997 ACTAAAATCAGTGTTTTCTGGCAC 58.168 37.500 0.00 0.00 36.25 5.01
3271 3438 5.009610 GGACTAAAATCAGTGTTTTCTGGCA 59.990 40.000 0.00 0.00 36.25 4.92
3272 3439 5.241728 AGGACTAAAATCAGTGTTTTCTGGC 59.758 40.000 0.00 0.00 36.25 4.85
3273 3440 6.884280 AGGACTAAAATCAGTGTTTTCTGG 57.116 37.500 0.00 0.00 36.25 3.86
3280 3447 8.515414 GCAAAAGATTAGGACTAAAATCAGTGT 58.485 33.333 0.00 0.00 35.07 3.55
3281 3448 8.514594 TGCAAAAGATTAGGACTAAAATCAGTG 58.485 33.333 0.00 0.00 35.07 3.66
3282 3449 8.635765 TGCAAAAGATTAGGACTAAAATCAGT 57.364 30.769 0.00 0.00 35.07 3.41
3283 3450 9.912634 TTTGCAAAAGATTAGGACTAAAATCAG 57.087 29.630 10.02 0.00 35.07 2.90
3308 3475 5.317733 TGAAACGGTTGATCAGTGTTTTT 57.682 34.783 17.57 7.10 33.27 1.94
3309 3476 4.974368 TGAAACGGTTGATCAGTGTTTT 57.026 36.364 17.57 8.21 33.27 2.43
3310 3477 4.792704 GCATGAAACGGTTGATCAGTGTTT 60.793 41.667 16.91 16.91 35.61 2.83
3311 3478 3.304659 GCATGAAACGGTTGATCAGTGTT 60.305 43.478 0.00 0.00 0.00 3.32
3312 3479 2.226437 GCATGAAACGGTTGATCAGTGT 59.774 45.455 0.00 0.00 0.00 3.55
3313 3480 2.226200 TGCATGAAACGGTTGATCAGTG 59.774 45.455 0.00 0.00 0.00 3.66
3314 3481 2.503331 TGCATGAAACGGTTGATCAGT 58.497 42.857 0.00 0.00 0.00 3.41
3315 3482 3.770263 ATGCATGAAACGGTTGATCAG 57.230 42.857 0.00 0.00 0.00 2.90
3316 3483 4.517952 AAATGCATGAAACGGTTGATCA 57.482 36.364 0.00 0.00 0.00 2.92
3317 3484 6.183360 GGTTAAAATGCATGAAACGGTTGATC 60.183 38.462 0.00 0.00 0.00 2.92
3318 3485 5.637387 GGTTAAAATGCATGAAACGGTTGAT 59.363 36.000 0.00 0.00 0.00 2.57
3319 3486 4.985409 GGTTAAAATGCATGAAACGGTTGA 59.015 37.500 0.00 0.00 0.00 3.18
3320 3487 4.987912 AGGTTAAAATGCATGAAACGGTTG 59.012 37.500 0.00 0.00 0.00 3.77
3321 3488 5.208463 AGGTTAAAATGCATGAAACGGTT 57.792 34.783 0.00 0.00 0.00 4.44
3322 3489 4.614993 CGAGGTTAAAATGCATGAAACGGT 60.615 41.667 0.00 0.00 0.00 4.83
3323 3490 3.851403 CGAGGTTAAAATGCATGAAACGG 59.149 43.478 0.00 0.00 0.00 4.44
3324 3491 4.717991 TCGAGGTTAAAATGCATGAAACG 58.282 39.130 0.00 3.33 0.00 3.60
3325 3492 8.745837 CATAATCGAGGTTAAAATGCATGAAAC 58.254 33.333 0.00 5.25 0.00 2.78
3326 3493 8.681806 TCATAATCGAGGTTAAAATGCATGAAA 58.318 29.630 0.00 0.00 0.00 2.69
3327 3494 8.128582 GTCATAATCGAGGTTAAAATGCATGAA 58.871 33.333 0.00 0.00 0.00 2.57
3328 3495 7.281999 TGTCATAATCGAGGTTAAAATGCATGA 59.718 33.333 0.00 0.00 0.00 3.07
3329 3496 7.416817 TGTCATAATCGAGGTTAAAATGCATG 58.583 34.615 0.00 0.00 0.00 4.06
3330 3497 7.566760 TGTCATAATCGAGGTTAAAATGCAT 57.433 32.000 0.00 0.00 0.00 3.96
3331 3498 6.993786 TGTCATAATCGAGGTTAAAATGCA 57.006 33.333 0.00 0.00 0.00 3.96
3332 3499 7.376866 CACATGTCATAATCGAGGTTAAAATGC 59.623 37.037 0.00 0.00 0.00 3.56
3333 3500 7.857389 CCACATGTCATAATCGAGGTTAAAATG 59.143 37.037 0.00 0.00 0.00 2.32
3334 3501 7.013274 CCCACATGTCATAATCGAGGTTAAAAT 59.987 37.037 0.00 0.00 0.00 1.82
3335 3502 6.317642 CCCACATGTCATAATCGAGGTTAAAA 59.682 38.462 0.00 0.00 0.00 1.52
3336 3503 5.820423 CCCACATGTCATAATCGAGGTTAAA 59.180 40.000 0.00 0.00 0.00 1.52
3337 3504 5.364778 CCCACATGTCATAATCGAGGTTAA 58.635 41.667 0.00 0.00 0.00 2.01
3338 3505 4.202315 CCCCACATGTCATAATCGAGGTTA 60.202 45.833 0.00 0.00 0.00 2.85
3339 3506 3.433598 CCCCACATGTCATAATCGAGGTT 60.434 47.826 0.00 0.00 0.00 3.50
3340 3507 2.104792 CCCCACATGTCATAATCGAGGT 59.895 50.000 0.00 0.00 0.00 3.85
3341 3508 2.771089 CCCCACATGTCATAATCGAGG 58.229 52.381 0.00 0.00 0.00 4.63
3342 3509 2.146342 GCCCCACATGTCATAATCGAG 58.854 52.381 0.00 0.00 0.00 4.04
3343 3510 1.202758 GGCCCCACATGTCATAATCGA 60.203 52.381 0.00 0.00 0.00 3.59
3344 3511 1.238439 GGCCCCACATGTCATAATCG 58.762 55.000 0.00 0.00 0.00 3.34
3345 3512 2.363306 TGGCCCCACATGTCATAATC 57.637 50.000 0.00 0.00 0.00 1.75
3346 3513 2.600790 CATGGCCCCACATGTCATAAT 58.399 47.619 0.00 0.00 42.48 1.28
3347 3514 1.411359 CCATGGCCCCACATGTCATAA 60.411 52.381 0.00 0.00 45.21 1.90
3348 3515 0.185658 CCATGGCCCCACATGTCATA 59.814 55.000 0.00 0.00 45.21 2.15
3349 3516 1.075822 CCATGGCCCCACATGTCAT 60.076 57.895 0.00 0.00 45.21 3.06
3350 3517 1.210885 TACCATGGCCCCACATGTCA 61.211 55.000 13.04 0.00 45.21 3.58
3351 3518 0.185901 ATACCATGGCCCCACATGTC 59.814 55.000 13.04 0.00 45.21 3.06
3352 3519 0.636101 AATACCATGGCCCCACATGT 59.364 50.000 13.04 0.00 45.21 3.21
3353 3520 1.792115 AAATACCATGGCCCCACATG 58.208 50.000 13.04 0.00 46.02 3.21
3354 3521 2.504996 CAAAAATACCATGGCCCCACAT 59.495 45.455 13.04 0.00 0.00 3.21
3355 3522 1.905215 CAAAAATACCATGGCCCCACA 59.095 47.619 13.04 0.00 0.00 4.17
3356 3523 1.406751 GCAAAAATACCATGGCCCCAC 60.407 52.381 13.04 0.00 0.00 4.61
3357 3524 0.908198 GCAAAAATACCATGGCCCCA 59.092 50.000 13.04 0.00 0.00 4.96
3358 3525 0.908198 TGCAAAAATACCATGGCCCC 59.092 50.000 13.04 0.00 0.00 5.80
3359 3526 3.387699 ACTATGCAAAAATACCATGGCCC 59.612 43.478 13.04 0.00 0.00 5.80
3360 3527 4.099266 TGACTATGCAAAAATACCATGGCC 59.901 41.667 13.04 0.00 0.00 5.36
3361 3528 5.043248 GTGACTATGCAAAAATACCATGGC 58.957 41.667 13.04 0.00 0.00 4.40
3362 3529 5.451798 GGGTGACTATGCAAAAATACCATGG 60.452 44.000 11.19 11.19 0.00 3.66
3363 3530 5.360714 AGGGTGACTATGCAAAAATACCATG 59.639 40.000 12.80 0.00 0.00 3.66
3364 3531 5.518865 AGGGTGACTATGCAAAAATACCAT 58.481 37.500 12.80 5.04 0.00 3.55
3365 3532 4.929479 AGGGTGACTATGCAAAAATACCA 58.071 39.130 12.80 0.00 0.00 3.25
3366 3533 5.448632 CGAAGGGTGACTATGCAAAAATACC 60.449 44.000 0.00 0.00 0.00 2.73
3367 3534 5.569413 CGAAGGGTGACTATGCAAAAATAC 58.431 41.667 0.00 0.00 0.00 1.89
3368 3535 5.811399 CGAAGGGTGACTATGCAAAAATA 57.189 39.130 0.00 0.00 0.00 1.40
3369 3536 4.701956 CGAAGGGTGACTATGCAAAAAT 57.298 40.909 0.00 0.00 0.00 1.82
3370 3537 4.809349 ATCCGAAGGGTGACTATGCAAAAA 60.809 41.667 0.00 0.00 44.06 1.94
3371 3538 3.308117 ATCCGAAGGGTGACTATGCAAAA 60.308 43.478 0.00 0.00 44.06 2.44
3372 3539 2.238646 ATCCGAAGGGTGACTATGCAAA 59.761 45.455 0.00 0.00 44.06 3.68
3373 3540 1.837439 ATCCGAAGGGTGACTATGCAA 59.163 47.619 0.00 0.00 44.06 4.08
3374 3541 1.496060 ATCCGAAGGGTGACTATGCA 58.504 50.000 0.00 0.00 44.06 3.96
3375 3542 3.746045 TTATCCGAAGGGTGACTATGC 57.254 47.619 0.00 0.00 44.06 3.14
3376 3543 5.671493 ACTTTTATCCGAAGGGTGACTATG 58.329 41.667 0.00 0.00 44.06 2.23
3377 3544 5.952347 ACTTTTATCCGAAGGGTGACTAT 57.048 39.130 0.00 0.00 44.06 2.12
3378 3545 5.716228 TGTACTTTTATCCGAAGGGTGACTA 59.284 40.000 0.00 0.00 44.06 2.59
3379 3546 4.529377 TGTACTTTTATCCGAAGGGTGACT 59.471 41.667 0.00 0.00 44.06 3.41
3380 3547 4.824289 TGTACTTTTATCCGAAGGGTGAC 58.176 43.478 0.00 0.00 44.06 3.67
3381 3548 5.486735 TTGTACTTTTATCCGAAGGGTGA 57.513 39.130 0.00 0.00 44.06 4.02
3382 3549 6.376177 GTTTTGTACTTTTATCCGAAGGGTG 58.624 40.000 0.00 0.00 44.06 4.61
3386 3553 5.681880 TGCGTTTTGTACTTTTATCCGAAG 58.318 37.500 0.00 0.00 0.00 3.79
3387 3554 5.670149 TGCGTTTTGTACTTTTATCCGAA 57.330 34.783 0.00 0.00 0.00 4.30
3388 3555 5.670149 TTGCGTTTTGTACTTTTATCCGA 57.330 34.783 0.00 0.00 0.00 4.55
3389 3556 6.081049 TGATTGCGTTTTGTACTTTTATCCG 58.919 36.000 0.00 0.00 0.00 4.18
3390 3557 6.033513 GCTGATTGCGTTTTGTACTTTTATCC 59.966 38.462 0.00 0.00 0.00 2.59
3391 3558 6.967498 GCTGATTGCGTTTTGTACTTTTATC 58.033 36.000 0.00 0.00 0.00 1.75
3392 3559 6.927933 GCTGATTGCGTTTTGTACTTTTAT 57.072 33.333 0.00 0.00 0.00 1.40
3407 3574 1.427020 GCGACAAGGAGCTGATTGC 59.573 57.895 0.00 0.00 43.29 3.56
3408 3575 1.699656 CGGCGACAAGGAGCTGATTG 61.700 60.000 0.00 0.00 42.01 2.67
3409 3576 1.448540 CGGCGACAAGGAGCTGATT 60.449 57.895 0.00 0.00 42.01 2.57
3410 3577 2.185350 CGGCGACAAGGAGCTGAT 59.815 61.111 0.00 0.00 42.01 2.90
3411 3578 4.069232 CCGGCGACAAGGAGCTGA 62.069 66.667 9.30 0.00 42.01 4.26
3429 3596 2.895865 CGATGCCTCTGCTGCAGG 60.896 66.667 27.79 16.03 42.92 4.85
3430 3597 2.895865 CCGATGCCTCTGCTGCAG 60.896 66.667 23.31 23.31 42.92 4.41
3436 3603 3.804153 ATGAGCGCCGATGCCTCTG 62.804 63.158 2.29 0.00 36.40 3.35
3437 3604 3.544607 ATGAGCGCCGATGCCTCT 61.545 61.111 2.29 0.00 36.40 3.69
3438 3605 3.344215 CATGAGCGCCGATGCCTC 61.344 66.667 2.29 0.00 36.15 4.70
3439 3606 4.923942 CCATGAGCGCCGATGCCT 62.924 66.667 2.29 0.00 34.65 4.75
3441 3608 3.643978 GACCATGAGCGCCGATGC 61.644 66.667 2.29 0.00 0.00 3.91
3442 3609 2.969238 GGACCATGAGCGCCGATG 60.969 66.667 2.29 6.52 0.00 3.84
3443 3610 3.157252 AGGACCATGAGCGCCGAT 61.157 61.111 2.29 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.