Multiple sequence alignment - TraesCS4B01G127700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G127700 chr4B 100.000 4245 0 0 1 4245 167362206 167366450 0.000000e+00 7840.0
1 TraesCS4B01G127700 chr4B 87.500 56 5 2 714 769 573506586 573506639 3.540000e-06 63.9
2 TraesCS4B01G127700 chr4A 90.712 1841 90 29 822 2613 467258512 467260320 0.000000e+00 2377.0
3 TraesCS4B01G127700 chr4A 96.586 498 13 2 2774 3267 467260319 467260816 0.000000e+00 822.0
4 TraesCS4B01G127700 chr4A 87.952 249 23 3 3997 4245 467261146 467261387 1.930000e-73 287.0
5 TraesCS4B01G127700 chr4A 84.828 145 21 1 13 157 467257822 467257965 1.230000e-30 145.0
6 TraesCS4B01G127700 chr4A 94.382 89 4 1 3270 3357 467261057 467261145 7.400000e-28 135.0
7 TraesCS4B01G127700 chr4A 89.286 56 6 0 714 769 59253659 59253714 2.120000e-08 71.3
8 TraesCS4B01G127700 chr4D 92.141 1527 61 30 822 2321 109252875 109254369 0.000000e+00 2100.0
9 TraesCS4B01G127700 chr4D 95.540 583 15 3 2774 3356 109254485 109255056 0.000000e+00 922.0
10 TraesCS4B01G127700 chr4D 84.877 324 38 6 11 325 109265309 109264988 2.460000e-82 316.0
11 TraesCS4B01G127700 chr4D 86.449 214 29 0 335 548 109252493 109252706 7.100000e-58 235.0
12 TraesCS4B01G127700 chr4D 96.522 115 4 0 2499 2613 109254372 109254486 1.560000e-44 191.0
13 TraesCS4B01G127700 chr4D 91.045 67 4 2 3292 3357 198619068 198619003 5.850000e-14 89.8
14 TraesCS4B01G127700 chr4D 88.060 67 5 3 3293 3357 394889815 394889750 4.550000e-10 76.8
15 TraesCS4B01G127700 chr3B 94.145 649 27 6 3354 3994 101924872 101925517 0.000000e+00 977.0
16 TraesCS4B01G127700 chr3B 97.159 176 5 0 2609 2784 788213091 788213266 8.920000e-77 298.0
17 TraesCS4B01G127700 chr3B 98.214 168 3 0 2608 2775 256781477 256781310 1.150000e-75 294.0
18 TraesCS4B01G127700 chr3B 97.110 173 5 0 2612 2784 178399251 178399079 4.150000e-75 292.0
19 TraesCS4B01G127700 chr5D 93.991 649 28 6 3354 3994 299972512 299971867 0.000000e+00 972.0
20 TraesCS4B01G127700 chr5D 93.972 647 29 7 3354 3994 503313498 503314140 0.000000e+00 970.0
21 TraesCS4B01G127700 chr5D 93.529 649 31 5 3354 3994 6253280 6252635 0.000000e+00 955.0
22 TraesCS4B01G127700 chr5D 90.769 65 5 1 714 777 4258684 4258748 7.560000e-13 86.1
23 TraesCS4B01G127700 chr3A 93.991 649 28 6 3354 3994 105556961 105556316 0.000000e+00 972.0
24 TraesCS4B01G127700 chr1B 93.991 649 28 6 3354 3994 633716967 633717612 0.000000e+00 972.0
25 TraesCS4B01G127700 chr1B 97.159 176 2 3 2612 2785 74246723 74246897 1.150000e-75 294.0
26 TraesCS4B01G127700 chr1B 97.093 172 5 0 2604 2775 442958256 442958085 1.490000e-74 291.0
27 TraesCS4B01G127700 chrUn 93.981 648 28 7 3354 3994 261568697 261568054 0.000000e+00 970.0
28 TraesCS4B01G127700 chrUn 87.500 56 7 0 714 769 273925358 273925303 9.850000e-07 65.8
29 TraesCS4B01G127700 chr7B 93.846 650 28 6 3354 3994 662755039 662754393 0.000000e+00 968.0
30 TraesCS4B01G127700 chr7B 99.401 167 1 0 2609 2775 657551550 657551384 1.920000e-78 303.0
31 TraesCS4B01G127700 chr7B 88.333 60 7 0 704 763 708469058 708468999 5.890000e-09 73.1
32 TraesCS4B01G127700 chr5B 93.846 650 28 6 3354 3994 57515129 57514483 0.000000e+00 968.0
33 TraesCS4B01G127700 chr5B 98.788 165 2 0 2611 2775 276913961 276913797 1.150000e-75 294.0
34 TraesCS4B01G127700 chr2B 97.647 170 4 0 2611 2780 549512432 549512601 4.150000e-75 292.0
35 TraesCS4B01G127700 chr1A 97.110 173 5 0 2611 2783 497183472 497183644 4.150000e-75 292.0
36 TraesCS4B01G127700 chr2D 92.647 68 3 2 3291 3357 228931300 228931366 3.490000e-16 97.1
37 TraesCS4B01G127700 chr2D 87.879 66 6 2 714 777 608770145 608770080 4.550000e-10 76.8
38 TraesCS4B01G127700 chr2A 92.308 65 3 1 708 770 770024767 770024831 1.630000e-14 91.6
39 TraesCS4B01G127700 chr6B 89.552 67 5 2 3292 3357 227283386 227283321 2.720000e-12 84.2
40 TraesCS4B01G127700 chr6A 89.552 67 5 2 3292 3357 219424704 219424639 2.720000e-12 84.2
41 TraesCS4B01G127700 chr6A 91.667 60 5 0 709 768 555519584 555519643 2.720000e-12 84.2
42 TraesCS4B01G127700 chr5A 93.103 58 3 1 3301 3357 454724765 454724822 2.720000e-12 84.2
43 TraesCS4B01G127700 chr3D 87.671 73 7 2 707 777 508186979 508187051 2.720000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G127700 chr4B 167362206 167366450 4244 False 7840.0 7840 100.000 1 4245 1 chr4B.!!$F1 4244
1 TraesCS4B01G127700 chr4A 467257822 467261387 3565 False 753.2 2377 90.892 13 4245 5 chr4A.!!$F2 4232
2 TraesCS4B01G127700 chr4D 109252493 109255056 2563 False 862.0 2100 92.663 335 3356 4 chr4D.!!$F1 3021
3 TraesCS4B01G127700 chr3B 101924872 101925517 645 False 977.0 977 94.145 3354 3994 1 chr3B.!!$F1 640
4 TraesCS4B01G127700 chr5D 299971867 299972512 645 True 972.0 972 93.991 3354 3994 1 chr5D.!!$R2 640
5 TraesCS4B01G127700 chr5D 503313498 503314140 642 False 970.0 970 93.972 3354 3994 1 chr5D.!!$F2 640
6 TraesCS4B01G127700 chr5D 6252635 6253280 645 True 955.0 955 93.529 3354 3994 1 chr5D.!!$R1 640
7 TraesCS4B01G127700 chr3A 105556316 105556961 645 True 972.0 972 93.991 3354 3994 1 chr3A.!!$R1 640
8 TraesCS4B01G127700 chr1B 633716967 633717612 645 False 972.0 972 93.991 3354 3994 1 chr1B.!!$F2 640
9 TraesCS4B01G127700 chrUn 261568054 261568697 643 True 970.0 970 93.981 3354 3994 1 chrUn.!!$R1 640
10 TraesCS4B01G127700 chr7B 662754393 662755039 646 True 968.0 968 93.846 3354 3994 1 chr7B.!!$R2 640
11 TraesCS4B01G127700 chr5B 57514483 57515129 646 True 968.0 968 93.846 3354 3994 1 chr5B.!!$R1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 266 0.036388 GGACCGGACATTCAGAAGCA 60.036 55.0 9.46 0.0 0.00 3.91 F
489 493 0.257328 TCACAAGAGGCCACACCAAA 59.743 50.0 5.01 0.0 43.14 3.28 F
490 494 0.385390 CACAAGAGGCCACACCAAAC 59.615 55.0 5.01 0.0 43.14 2.93 F
1438 1614 0.596600 TCGCGCCGATTATTCTCACC 60.597 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1721 1897 0.179124 CGCCAGAAGCTCAGACTACC 60.179 60.000 0.0 0.0 40.39 3.18 R
1729 1905 0.533032 AACTCTACCGCCAGAAGCTC 59.467 55.000 0.0 0.0 40.39 4.09 R
1920 2103 1.336755 CCAGAAAACCAAAGACCACGG 59.663 52.381 0.0 0.0 0.00 4.94 R
3421 3859 0.037447 GCTCAACTCAGCCCTTCCTT 59.963 55.000 0.0 0.0 32.76 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.966534 AAACATTAAATCTGGATAGCTGGG 57.033 37.500 0.00 0.00 0.00 4.45
51 52 2.196742 AATCTGGATAGCTGGGTGGA 57.803 50.000 0.00 0.00 0.00 4.02
53 54 1.043116 TCTGGATAGCTGGGTGGACG 61.043 60.000 0.00 0.00 0.00 4.79
84 85 6.424032 ACCTAAAGGAGAAAACATATGGACC 58.576 40.000 7.80 1.47 38.94 4.46
108 109 4.785346 AAGGACATATGCTCCAAGTGAT 57.215 40.909 19.88 2.95 0.00 3.06
119 120 3.869912 GCTCCAAGTGATAGTGAGCCAAA 60.870 47.826 0.00 0.00 41.95 3.28
120 121 4.521146 CTCCAAGTGATAGTGAGCCAAAT 58.479 43.478 0.00 0.00 0.00 2.32
126 127 3.624861 GTGATAGTGAGCCAAATGGACTG 59.375 47.826 2.98 0.00 37.39 3.51
129 130 1.675310 TGAGCCAAATGGACTGCCG 60.675 57.895 2.98 0.00 37.39 5.69
132 133 1.754234 GCCAAATGGACTGCCGGAT 60.754 57.895 5.05 0.00 37.39 4.18
134 135 1.103398 CCAAATGGACTGCCGGATCC 61.103 60.000 5.05 9.52 37.39 3.36
153 154 2.239654 TCCCTTCTAAAGCTCCCACATG 59.760 50.000 0.00 0.00 0.00 3.21
157 158 4.082571 CCTTCTAAAGCTCCCACATGTTTG 60.083 45.833 0.00 0.00 0.00 2.93
158 159 3.420893 TCTAAAGCTCCCACATGTTTGG 58.579 45.455 0.00 0.00 36.26 3.28
159 160 2.086610 AAAGCTCCCACATGTTTGGT 57.913 45.000 10.27 0.00 34.44 3.67
160 161 2.086610 AAGCTCCCACATGTTTGGTT 57.913 45.000 10.27 4.08 34.44 3.67
161 162 1.620822 AGCTCCCACATGTTTGGTTC 58.379 50.000 10.27 4.82 34.44 3.62
162 163 1.133513 AGCTCCCACATGTTTGGTTCA 60.134 47.619 10.27 0.00 34.44 3.18
163 164 1.270550 GCTCCCACATGTTTGGTTCAG 59.729 52.381 10.27 3.43 34.44 3.02
164 165 1.888512 CTCCCACATGTTTGGTTCAGG 59.111 52.381 10.27 0.03 34.44 3.86
165 166 1.216678 TCCCACATGTTTGGTTCAGGT 59.783 47.619 10.27 0.00 34.44 4.00
166 167 2.038659 CCCACATGTTTGGTTCAGGTT 58.961 47.619 0.00 0.00 34.44 3.50
167 168 2.433970 CCCACATGTTTGGTTCAGGTTT 59.566 45.455 0.00 0.00 34.44 3.27
168 169 3.456280 CCACATGTTTGGTTCAGGTTTG 58.544 45.455 0.00 0.00 0.00 2.93
169 170 3.118811 CCACATGTTTGGTTCAGGTTTGT 60.119 43.478 0.00 0.00 0.00 2.83
170 171 3.864583 CACATGTTTGGTTCAGGTTTGTG 59.135 43.478 0.00 0.00 0.00 3.33
171 172 3.118811 ACATGTTTGGTTCAGGTTTGTGG 60.119 43.478 0.00 0.00 0.00 4.17
172 173 2.808919 TGTTTGGTTCAGGTTTGTGGA 58.191 42.857 0.00 0.00 0.00 4.02
173 174 3.165875 TGTTTGGTTCAGGTTTGTGGAA 58.834 40.909 0.00 0.00 0.00 3.53
174 175 3.578716 TGTTTGGTTCAGGTTTGTGGAAA 59.421 39.130 0.00 0.00 0.00 3.13
175 176 4.223923 TGTTTGGTTCAGGTTTGTGGAAAT 59.776 37.500 0.00 0.00 0.00 2.17
176 177 4.664150 TTGGTTCAGGTTTGTGGAAATC 57.336 40.909 0.00 0.00 0.00 2.17
177 178 2.962421 TGGTTCAGGTTTGTGGAAATCC 59.038 45.455 0.00 0.00 0.00 3.01
178 179 2.962421 GGTTCAGGTTTGTGGAAATCCA 59.038 45.455 0.00 0.00 45.30 3.41
190 191 4.387026 TGGAAATCCAAACATCCAGACT 57.613 40.909 0.00 0.00 44.35 3.24
191 192 4.081406 TGGAAATCCAAACATCCAGACTG 58.919 43.478 0.00 0.00 44.35 3.51
192 193 4.082125 GGAAATCCAAACATCCAGACTGT 58.918 43.478 0.93 0.00 35.64 3.55
193 194 4.524328 GGAAATCCAAACATCCAGACTGTT 59.476 41.667 0.93 0.00 38.44 3.16
194 195 5.335976 GGAAATCCAAACATCCAGACTGTTC 60.336 44.000 0.93 0.00 35.84 3.18
195 196 3.140325 TCCAAACATCCAGACTGTTCC 57.860 47.619 0.93 0.00 35.84 3.62
196 197 1.806542 CCAAACATCCAGACTGTTCCG 59.193 52.381 0.93 0.00 35.84 4.30
197 198 1.197721 CAAACATCCAGACTGTTCCGC 59.802 52.381 0.93 0.00 35.84 5.54
198 199 0.670546 AACATCCAGACTGTTCCGCG 60.671 55.000 0.00 0.00 31.29 6.46
199 200 1.215382 CATCCAGACTGTTCCGCGA 59.785 57.895 8.23 0.00 0.00 5.87
200 201 0.179100 CATCCAGACTGTTCCGCGAT 60.179 55.000 8.23 0.00 0.00 4.58
201 202 0.103208 ATCCAGACTGTTCCGCGATC 59.897 55.000 8.23 0.00 0.00 3.69
202 203 1.874019 CCAGACTGTTCCGCGATCG 60.874 63.158 11.69 11.69 0.00 3.69
203 204 1.154016 CAGACTGTTCCGCGATCGT 60.154 57.895 17.81 0.00 0.00 3.73
204 205 0.732880 CAGACTGTTCCGCGATCGTT 60.733 55.000 17.81 0.00 0.00 3.85
205 206 0.038526 AGACTGTTCCGCGATCGTTT 60.039 50.000 17.81 0.00 0.00 3.60
206 207 0.093026 GACTGTTCCGCGATCGTTTG 59.907 55.000 17.81 7.06 0.00 2.93
207 208 0.319211 ACTGTTCCGCGATCGTTTGA 60.319 50.000 17.81 8.06 0.00 2.69
208 209 0.999406 CTGTTCCGCGATCGTTTGAT 59.001 50.000 17.81 0.00 37.60 2.57
209 210 0.718904 TGTTCCGCGATCGTTTGATG 59.281 50.000 17.81 0.17 34.09 3.07
210 211 0.586502 GTTCCGCGATCGTTTGATGC 60.587 55.000 17.81 0.00 34.09 3.91
211 212 1.016653 TTCCGCGATCGTTTGATGCA 61.017 50.000 17.81 0.00 34.09 3.96
212 213 0.809636 TCCGCGATCGTTTGATGCAT 60.810 50.000 17.81 0.00 34.09 3.96
213 214 0.858583 CCGCGATCGTTTGATGCATA 59.141 50.000 17.81 0.00 34.09 3.14
214 215 1.260297 CCGCGATCGTTTGATGCATAA 59.740 47.619 17.81 0.00 34.09 1.90
215 216 2.289654 CGCGATCGTTTGATGCATAAC 58.710 47.619 17.81 0.00 34.09 1.89
216 217 2.033747 CGCGATCGTTTGATGCATAACT 60.034 45.455 17.81 0.00 34.09 2.24
217 218 3.544048 CGCGATCGTTTGATGCATAACTT 60.544 43.478 17.81 0.00 34.09 2.66
218 219 4.342772 GCGATCGTTTGATGCATAACTTT 58.657 39.130 17.81 0.00 34.09 2.66
219 220 4.202959 GCGATCGTTTGATGCATAACTTTG 59.797 41.667 17.81 0.00 34.09 2.77
220 221 4.730042 CGATCGTTTGATGCATAACTTTGG 59.270 41.667 7.03 0.00 34.09 3.28
221 222 5.447144 CGATCGTTTGATGCATAACTTTGGA 60.447 40.000 7.03 0.00 34.09 3.53
222 223 5.895636 TCGTTTGATGCATAACTTTGGAT 57.104 34.783 0.00 0.00 0.00 3.41
223 224 5.639757 TCGTTTGATGCATAACTTTGGATG 58.360 37.500 0.00 0.00 0.00 3.51
224 225 4.799949 CGTTTGATGCATAACTTTGGATGG 59.200 41.667 0.00 0.00 0.00 3.51
225 226 4.389890 TTGATGCATAACTTTGGATGGC 57.610 40.909 0.00 0.00 0.00 4.40
248 249 0.695924 AAATGTCCGGACCACATGGA 59.304 50.000 31.19 11.69 34.59 3.41
261 262 1.066215 CACATGGACCGGACATTCAGA 60.066 52.381 9.46 0.00 0.00 3.27
262 263 1.628340 ACATGGACCGGACATTCAGAA 59.372 47.619 9.46 0.00 0.00 3.02
265 266 0.036388 GGACCGGACATTCAGAAGCA 60.036 55.000 9.46 0.00 0.00 3.91
273 274 4.796830 CGGACATTCAGAAGCATTTTGATG 59.203 41.667 0.00 0.00 0.00 3.07
276 277 5.717119 ACATTCAGAAGCATTTTGATGGAC 58.283 37.500 0.00 0.00 0.00 4.02
284 285 3.006110 AGCATTTTGATGGACTGTGTTGG 59.994 43.478 0.00 0.00 0.00 3.77
296 297 2.578021 ACTGTGTTGGAGATGCCCTTAT 59.422 45.455 0.00 0.00 34.97 1.73
297 298 3.780294 ACTGTGTTGGAGATGCCCTTATA 59.220 43.478 0.00 0.00 34.97 0.98
298 299 4.141620 ACTGTGTTGGAGATGCCCTTATAG 60.142 45.833 0.00 0.00 34.97 1.31
305 306 4.713814 TGGAGATGCCCTTATAGCTATCTG 59.286 45.833 10.16 4.28 32.18 2.90
312 313 5.960202 TGCCCTTATAGCTATCTGATCATCA 59.040 40.000 10.16 0.00 0.00 3.07
315 316 8.087750 GCCCTTATAGCTATCTGATCATCATAC 58.912 40.741 10.16 0.00 0.00 2.39
316 317 9.140874 CCCTTATAGCTATCTGATCATCATACA 57.859 37.037 10.16 0.00 0.00 2.29
327 328 6.558394 TCTGATCATCATACATACTTCCCCAA 59.442 38.462 0.00 0.00 0.00 4.12
328 329 7.238305 TCTGATCATCATACATACTTCCCCAAT 59.762 37.037 0.00 0.00 0.00 3.16
329 330 7.397221 TGATCATCATACATACTTCCCCAATC 58.603 38.462 0.00 0.00 0.00 2.67
330 331 6.126863 TCATCATACATACTTCCCCAATCC 57.873 41.667 0.00 0.00 0.00 3.01
331 332 5.610557 TCATCATACATACTTCCCCAATCCA 59.389 40.000 0.00 0.00 0.00 3.41
343 347 6.332901 ACTTCCCCAATCCATTAGTAGCTAAT 59.667 38.462 0.00 0.00 37.16 1.73
362 366 7.219322 AGCTAATTTTCACAATTTTTGAGGCT 58.781 30.769 0.00 0.00 0.00 4.58
391 395 6.079336 TCGGTTAGTAGGGATCCAATCATAA 58.921 40.000 15.23 3.01 0.00 1.90
404 408 8.514594 GGATCCAATCATAAAGAAATTCGCATA 58.485 33.333 6.95 0.00 0.00 3.14
409 413 9.454585 CAATCATAAAGAAATTCGCATACACAT 57.545 29.630 0.00 0.00 0.00 3.21
453 457 2.287427 CCTCATGATTGCTTTGCGATCC 60.287 50.000 14.87 1.45 45.89 3.36
455 459 1.064505 CATGATTGCTTTGCGATCCGT 59.935 47.619 14.87 3.94 45.89 4.69
472 476 5.106869 CGATCCGTAAAGTTGTTGGATTTCA 60.107 40.000 4.94 0.00 39.47 2.69
475 479 5.357314 TCCGTAAAGTTGTTGGATTTCACAA 59.643 36.000 0.00 0.00 0.00 3.33
478 482 6.632834 CGTAAAGTTGTTGGATTTCACAAGAG 59.367 38.462 0.00 0.00 0.00 2.85
480 484 3.319122 AGTTGTTGGATTTCACAAGAGGC 59.681 43.478 0.00 0.00 0.00 4.70
485 489 1.541588 GGATTTCACAAGAGGCCACAC 59.458 52.381 5.01 0.00 0.00 3.82
489 493 0.257328 TCACAAGAGGCCACACCAAA 59.743 50.000 5.01 0.00 43.14 3.28
490 494 0.385390 CACAAGAGGCCACACCAAAC 59.615 55.000 5.01 0.00 43.14 2.93
501 505 5.600898 AGGCCACACCAAACTTTAAGTATTT 59.399 36.000 5.01 0.00 43.14 1.40
526 530 8.221965 TGTTTTTAAAACTTGGTGGTTTTGTT 57.778 26.923 19.39 0.00 45.33 2.83
527 531 8.683615 TGTTTTTAAAACTTGGTGGTTTTGTTT 58.316 25.926 19.39 0.00 45.33 2.83
576 580 8.706492 TTCTCTTTTGTAAGACGTTTTAGACA 57.294 30.769 0.00 0.00 35.49 3.41
577 581 8.348983 TCTCTTTTGTAAGACGTTTTAGACAG 57.651 34.615 0.00 0.00 35.49 3.51
578 582 7.437267 TCTCTTTTGTAAGACGTTTTAGACAGG 59.563 37.037 0.00 0.00 35.49 4.00
579 583 7.043565 TCTTTTGTAAGACGTTTTAGACAGGT 58.956 34.615 0.00 0.00 35.49 4.00
580 584 6.833342 TTTGTAAGACGTTTTAGACAGGTC 57.167 37.500 0.00 0.00 0.00 3.85
581 585 5.518848 TGTAAGACGTTTTAGACAGGTCA 57.481 39.130 0.00 0.00 0.00 4.02
582 586 5.526115 TGTAAGACGTTTTAGACAGGTCAG 58.474 41.667 0.00 0.00 0.00 3.51
583 587 4.931661 AAGACGTTTTAGACAGGTCAGA 57.068 40.909 1.84 0.00 0.00 3.27
584 588 5.470047 AAGACGTTTTAGACAGGTCAGAT 57.530 39.130 1.84 0.00 0.00 2.90
585 589 5.470047 AGACGTTTTAGACAGGTCAGATT 57.530 39.130 1.84 0.00 0.00 2.40
586 590 5.230942 AGACGTTTTAGACAGGTCAGATTG 58.769 41.667 1.84 0.00 0.00 2.67
587 591 4.957296 ACGTTTTAGACAGGTCAGATTGT 58.043 39.130 1.84 0.00 0.00 2.71
588 592 4.989168 ACGTTTTAGACAGGTCAGATTGTC 59.011 41.667 9.09 9.09 43.08 3.18
606 610 8.316640 AGATTGTCTGAGTTGTCTAAAACATC 57.683 34.615 0.00 0.00 37.82 3.06
607 611 8.153550 AGATTGTCTGAGTTGTCTAAAACATCT 58.846 33.333 0.00 0.00 39.99 2.90
608 612 8.682936 ATTGTCTGAGTTGTCTAAAACATCTT 57.317 30.769 0.00 0.00 37.91 2.40
609 613 9.778741 ATTGTCTGAGTTGTCTAAAACATCTTA 57.221 29.630 0.00 0.00 37.91 2.10
610 614 8.818141 TGTCTGAGTTGTCTAAAACATCTTAG 57.182 34.615 0.00 0.00 40.28 2.18
611 615 7.872993 TGTCTGAGTTGTCTAAAACATCTTAGG 59.127 37.037 7.68 0.00 39.78 2.69
612 616 8.088981 GTCTGAGTTGTCTAAAACATCTTAGGA 58.911 37.037 7.68 0.00 39.78 2.94
613 617 8.647796 TCTGAGTTGTCTAAAACATCTTAGGAA 58.352 33.333 7.68 0.00 39.78 3.36
614 618 9.273016 CTGAGTTGTCTAAAACATCTTAGGAAA 57.727 33.333 0.00 0.00 37.91 3.13
615 619 9.273016 TGAGTTGTCTAAAACATCTTAGGAAAG 57.727 33.333 0.00 0.00 37.91 2.62
616 620 9.274206 GAGTTGTCTAAAACATCTTAGGAAAGT 57.726 33.333 0.00 0.00 37.91 2.66
617 621 9.057089 AGTTGTCTAAAACATCTTAGGAAAGTG 57.943 33.333 0.00 0.00 37.82 3.16
618 622 9.052759 GTTGTCTAAAACATCTTAGGAAAGTGA 57.947 33.333 0.00 0.00 37.82 3.41
619 623 9.621629 TTGTCTAAAACATCTTAGGAAAGTGAA 57.378 29.630 0.00 0.00 37.82 3.18
620 624 9.052759 TGTCTAAAACATCTTAGGAAAGTGAAC 57.947 33.333 0.00 0.00 31.49 3.18
621 625 9.274206 GTCTAAAACATCTTAGGAAAGTGAACT 57.726 33.333 0.00 0.00 34.13 3.01
622 626 9.273016 TCTAAAACATCTTAGGAAAGTGAACTG 57.727 33.333 0.00 0.00 34.13 3.16
623 627 9.273016 CTAAAACATCTTAGGAAAGTGAACTGA 57.727 33.333 0.00 0.00 34.13 3.41
624 628 7.736447 AAACATCTTAGGAAAGTGAACTGAG 57.264 36.000 0.00 0.00 34.13 3.35
625 629 6.672266 ACATCTTAGGAAAGTGAACTGAGA 57.328 37.500 0.00 0.00 34.13 3.27
626 630 6.696411 ACATCTTAGGAAAGTGAACTGAGAG 58.304 40.000 0.00 0.00 31.62 3.20
627 631 6.495181 ACATCTTAGGAAAGTGAACTGAGAGA 59.505 38.462 0.00 0.00 31.62 3.10
628 632 6.582677 TCTTAGGAAAGTGAACTGAGAGAG 57.417 41.667 0.00 0.00 34.13 3.20
723 737 9.982651 TCTCAGATTTATAAATTACTCCCTTCG 57.017 33.333 11.92 0.00 0.00 3.79
724 738 9.765795 CTCAGATTTATAAATTACTCCCTTCGT 57.234 33.333 11.92 0.00 0.00 3.85
740 754 7.873505 ACTCCCTTCGTTTCATAATATAAGAGC 59.126 37.037 0.00 0.00 0.00 4.09
741 755 6.866770 TCCCTTCGTTTCATAATATAAGAGCG 59.133 38.462 0.00 0.00 0.00 5.03
742 756 6.401153 CCCTTCGTTTCATAATATAAGAGCGC 60.401 42.308 0.00 0.00 0.00 5.92
743 757 6.366332 CCTTCGTTTCATAATATAAGAGCGCT 59.634 38.462 11.27 11.27 0.00 5.92
744 758 7.095607 CCTTCGTTTCATAATATAAGAGCGCTT 60.096 37.037 13.26 8.09 38.15 4.68
745 759 7.709269 TCGTTTCATAATATAAGAGCGCTTT 57.291 32.000 13.26 1.42 35.56 3.51
746 760 8.138365 TCGTTTCATAATATAAGAGCGCTTTT 57.862 30.769 17.98 17.98 35.56 2.27
747 761 8.609176 TCGTTTCATAATATAAGAGCGCTTTTT 58.391 29.630 19.12 15.06 35.56 1.94
748 762 9.858247 CGTTTCATAATATAAGAGCGCTTTTTA 57.142 29.630 19.12 16.70 35.56 1.52
752 766 9.542462 TCATAATATAAGAGCGCTTTTTACACT 57.458 29.630 19.12 2.20 35.56 3.55
755 769 7.948278 ATATAAGAGCGCTTTTTACACTAGG 57.052 36.000 19.12 0.00 35.56 3.02
756 770 2.973945 AGAGCGCTTTTTACACTAGGG 58.026 47.619 13.26 0.00 0.00 3.53
757 771 1.397343 GAGCGCTTTTTACACTAGGGC 59.603 52.381 13.26 0.00 45.11 5.19
758 772 1.161843 GCGCTTTTTACACTAGGGCA 58.838 50.000 0.00 0.00 44.43 5.36
759 773 1.130561 GCGCTTTTTACACTAGGGCAG 59.869 52.381 0.00 0.00 44.43 4.85
760 774 2.423577 CGCTTTTTACACTAGGGCAGT 58.576 47.619 0.00 0.00 38.32 4.40
770 784 2.218603 ACTAGGGCAGTGTCAAAAACG 58.781 47.619 0.00 0.00 35.62 3.60
771 785 2.218603 CTAGGGCAGTGTCAAAAACGT 58.781 47.619 0.00 0.00 0.00 3.99
772 786 2.335316 AGGGCAGTGTCAAAAACGTA 57.665 45.000 0.00 0.00 0.00 3.57
773 787 2.858745 AGGGCAGTGTCAAAAACGTAT 58.141 42.857 0.00 0.00 0.00 3.06
774 788 3.219281 AGGGCAGTGTCAAAAACGTATT 58.781 40.909 0.00 0.00 0.00 1.89
775 789 4.391155 AGGGCAGTGTCAAAAACGTATTA 58.609 39.130 0.00 0.00 0.00 0.98
776 790 5.007682 AGGGCAGTGTCAAAAACGTATTAT 58.992 37.500 0.00 0.00 0.00 1.28
777 791 5.092781 GGGCAGTGTCAAAAACGTATTATG 58.907 41.667 0.00 0.00 0.00 1.90
778 792 5.092781 GGCAGTGTCAAAAACGTATTATGG 58.907 41.667 0.00 0.00 0.00 2.74
779 793 5.106475 GGCAGTGTCAAAAACGTATTATGGA 60.106 40.000 0.00 0.00 0.00 3.41
780 794 6.375377 GCAGTGTCAAAAACGTATTATGGAA 58.625 36.000 0.00 0.00 0.00 3.53
781 795 6.523201 GCAGTGTCAAAAACGTATTATGGAAG 59.477 38.462 0.00 0.00 0.00 3.46
782 796 7.021196 CAGTGTCAAAAACGTATTATGGAAGG 58.979 38.462 0.00 0.00 0.00 3.46
783 797 6.150474 AGTGTCAAAAACGTATTATGGAAGGG 59.850 38.462 0.00 0.00 0.00 3.95
784 798 6.149807 GTGTCAAAAACGTATTATGGAAGGGA 59.850 38.462 0.00 0.00 0.00 4.20
785 799 6.373216 TGTCAAAAACGTATTATGGAAGGGAG 59.627 38.462 0.00 0.00 0.00 4.30
786 800 5.883673 TCAAAAACGTATTATGGAAGGGAGG 59.116 40.000 0.00 0.00 0.00 4.30
787 801 4.432980 AAACGTATTATGGAAGGGAGGG 57.567 45.455 0.00 0.00 0.00 4.30
788 802 3.339713 ACGTATTATGGAAGGGAGGGA 57.660 47.619 0.00 0.00 0.00 4.20
789 803 3.240302 ACGTATTATGGAAGGGAGGGAG 58.760 50.000 0.00 0.00 0.00 4.30
839 965 2.867472 GTTTGTGTCCGATGGGCG 59.133 61.111 0.00 0.00 40.47 6.13
912 1038 1.427819 CGTCACGGCCCTATTTTGC 59.572 57.895 0.00 0.00 0.00 3.68
916 1042 1.834896 TCACGGCCCTATTTTGCTCTA 59.165 47.619 0.00 0.00 0.00 2.43
944 1085 3.808728 TCGATCCAAATAGGCCTTCAAG 58.191 45.455 12.58 0.00 37.29 3.02
954 1095 3.092851 GCCTTCAAGCCTCCTCATC 57.907 57.895 0.00 0.00 0.00 2.92
958 1099 3.424703 CCTTCAAGCCTCCTCATCAAAA 58.575 45.455 0.00 0.00 0.00 2.44
959 1100 3.442977 CCTTCAAGCCTCCTCATCAAAAG 59.557 47.826 0.00 0.00 0.00 2.27
960 1101 3.077484 TCAAGCCTCCTCATCAAAAGG 57.923 47.619 0.00 0.00 35.05 3.11
965 1106 4.085009 AGCCTCCTCATCAAAAGGAAAAG 58.915 43.478 0.00 0.00 42.31 2.27
973 1114 8.757877 TCCTCATCAAAAGGAAAAGAAAAAGAA 58.242 29.630 0.00 0.00 39.99 2.52
974 1115 9.382275 CCTCATCAAAAGGAAAAGAAAAAGAAA 57.618 29.630 0.00 0.00 35.83 2.52
1015 1156 1.407437 CCATCGTCTTCTTCCCCCTTG 60.407 57.143 0.00 0.00 0.00 3.61
1053 1194 3.381045 GGAAAGGAAAACAAAAGCCGAG 58.619 45.455 0.00 0.00 0.00 4.63
1102 1249 1.008206 AGAGAGGAGATTGCAGGAGGT 59.992 52.381 0.00 0.00 0.00 3.85
1202 1373 3.036819 CCTAGACCCTAAACCTACACCC 58.963 54.545 0.00 0.00 0.00 4.61
1272 1443 1.674322 CATCGGGCCCTTCGTTTGT 60.674 57.895 22.43 0.00 0.00 2.83
1325 1496 7.166804 GCGGTAATTTTTGTGCGATGTAATAAT 59.833 33.333 0.00 0.00 0.00 1.28
1337 1508 4.671964 CGATGTAATAATCGTCGACGGAAA 59.328 41.667 35.05 21.26 44.02 3.13
1350 1526 2.159099 CGACGGAAAAGGATGATCTGGA 60.159 50.000 0.00 0.00 0.00 3.86
1351 1527 3.678806 CGACGGAAAAGGATGATCTGGAA 60.679 47.826 0.00 0.00 0.00 3.53
1361 1537 3.200825 GGATGATCTGGAACTCCCTTCAA 59.799 47.826 0.00 0.00 35.38 2.69
1438 1614 0.596600 TCGCGCCGATTATTCTCACC 60.597 55.000 0.00 0.00 0.00 4.02
1441 1617 1.784525 CGCCGATTATTCTCACCCTC 58.215 55.000 0.00 0.00 0.00 4.30
1442 1618 1.068588 CGCCGATTATTCTCACCCTCA 59.931 52.381 0.00 0.00 0.00 3.86
1588 1764 7.099266 TGAATCCAGCATTACAAATTGTAGG 57.901 36.000 5.94 4.27 33.92 3.18
1723 1899 4.102210 CAGATCCATTGTACATCTGGAGGT 59.898 45.833 24.10 13.94 42.10 3.85
1728 1904 4.651503 CCATTGTACATCTGGAGGTAGTCT 59.348 45.833 16.41 0.00 31.38 3.24
1729 1905 5.452496 CCATTGTACATCTGGAGGTAGTCTG 60.452 48.000 16.41 0.00 31.38 3.51
1751 1927 1.079503 CTTCTGGCGGTAGAGTTTGC 58.920 55.000 0.00 0.00 0.00 3.68
1806 1989 6.342111 CCCTTACTCTAAACTGAACCATCTC 58.658 44.000 0.00 0.00 0.00 2.75
1864 2047 5.520288 CCACGTCCATTAGTCAGTTAATCAG 59.480 44.000 0.00 0.00 0.00 2.90
1920 2103 3.487372 AGGGTACAAGGAAGCTTGAAAC 58.513 45.455 2.10 0.00 37.72 2.78
1954 2138 4.215613 GGTTTTCTGGCAACCTGTAGTTAG 59.784 45.833 0.00 0.00 40.66 2.34
2005 2189 8.854117 GTCATTGAAATTAGAATAGCCCTGAAT 58.146 33.333 0.00 0.00 0.00 2.57
2019 2205 2.615493 CCCTGAATACCAAGTGCGTCTT 60.615 50.000 0.00 0.00 36.75 3.01
2027 2213 8.952278 TGAATACCAAGTGCGTCTTTAATTATT 58.048 29.630 0.00 0.00 33.63 1.40
2296 2483 6.071952 CCATGTAGTGGTATTTCACAAGCTTT 60.072 38.462 0.00 0.00 43.44 3.51
2377 2564 2.644418 GCATGCAACTTGCCGTCA 59.356 55.556 14.21 0.00 44.23 4.35
2378 2565 1.213537 GCATGCAACTTGCCGTCAT 59.786 52.632 14.21 0.00 44.23 3.06
2398 2585 6.073548 CGTCATATCTTGGAAGCTTATGTTCC 60.074 42.308 0.00 0.00 43.45 3.62
2413 2600 6.095440 GCTTATGTTCCTGGTCATTTATGTGT 59.905 38.462 10.94 0.00 0.00 3.72
2464 2651 4.151689 TCAGAGTGCACGTTTAATAGTTGC 59.848 41.667 12.01 0.00 0.00 4.17
2465 2652 3.122948 AGAGTGCACGTTTAATAGTTGCG 59.877 43.478 12.01 0.00 0.00 4.85
2614 2809 9.740710 AATAGTTGGTTTCATTTAGCTTCTACT 57.259 29.630 0.00 0.00 0.00 2.57
2615 2810 7.674471 AGTTGGTTTCATTTAGCTTCTACTC 57.326 36.000 0.00 0.00 0.00 2.59
2616 2811 6.655425 AGTTGGTTTCATTTAGCTTCTACTCC 59.345 38.462 0.00 0.00 0.00 3.85
2617 2812 5.497474 TGGTTTCATTTAGCTTCTACTCCC 58.503 41.667 0.00 0.00 0.00 4.30
2618 2813 5.250774 TGGTTTCATTTAGCTTCTACTCCCT 59.749 40.000 0.00 0.00 0.00 4.20
2619 2814 5.818336 GGTTTCATTTAGCTTCTACTCCCTC 59.182 44.000 0.00 0.00 0.00 4.30
2620 2815 4.920640 TCATTTAGCTTCTACTCCCTCG 57.079 45.455 0.00 0.00 0.00 4.63
2621 2816 3.637229 TCATTTAGCTTCTACTCCCTCGG 59.363 47.826 0.00 0.00 0.00 4.63
2622 2817 2.822707 TTAGCTTCTACTCCCTCGGT 57.177 50.000 0.00 0.00 0.00 4.69
2623 2818 2.822707 TAGCTTCTACTCCCTCGGTT 57.177 50.000 0.00 0.00 0.00 4.44
2624 2819 1.476477 AGCTTCTACTCCCTCGGTTC 58.524 55.000 0.00 0.00 0.00 3.62
2625 2820 0.460722 GCTTCTACTCCCTCGGTTCC 59.539 60.000 0.00 0.00 0.00 3.62
2626 2821 1.112950 CTTCTACTCCCTCGGTTCCC 58.887 60.000 0.00 0.00 0.00 3.97
2627 2822 0.410663 TTCTACTCCCTCGGTTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
2628 2823 0.410663 TCTACTCCCTCGGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
2629 2824 1.203212 TCTACTCCCTCGGTTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
2630 2825 1.838077 CTACTCCCTCGGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
2631 2826 1.961133 ACTCCCTCGGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2632 2827 1.558294 ACTCCCTCGGTTCCCAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
2633 2828 1.838077 CTCCCTCGGTTCCCAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
2634 2829 2.238898 CTCCCTCGGTTCCCAAATACTT 59.761 50.000 0.00 0.00 0.00 2.24
2635 2830 2.026636 TCCCTCGGTTCCCAAATACTTG 60.027 50.000 0.00 0.00 0.00 3.16
2636 2831 2.290705 CCCTCGGTTCCCAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
2637 2832 3.007635 CCTCGGTTCCCAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
2638 2833 3.307480 CCTCGGTTCCCAAATACTTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2639 2834 4.324267 CTCGGTTCCCAAATACTTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2640 2835 4.721132 TCGGTTCCCAAATACTTGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
2641 2836 4.758165 TCGGTTCCCAAATACTTGTCTTTC 59.242 41.667 0.00 0.00 0.00 2.62
2642 2837 4.760204 CGGTTCCCAAATACTTGTCTTTCT 59.240 41.667 0.00 0.00 0.00 2.52
2643 2838 5.935789 CGGTTCCCAAATACTTGTCTTTCTA 59.064 40.000 0.00 0.00 0.00 2.10
2644 2839 6.092259 CGGTTCCCAAATACTTGTCTTTCTAG 59.908 42.308 0.00 0.00 0.00 2.43
2645 2840 6.374613 GGTTCCCAAATACTTGTCTTTCTAGG 59.625 42.308 0.00 0.00 0.00 3.02
2646 2841 5.497474 TCCCAAATACTTGTCTTTCTAGGC 58.503 41.667 0.00 0.00 0.00 3.93
2647 2842 5.013704 TCCCAAATACTTGTCTTTCTAGGCA 59.986 40.000 0.00 0.00 33.22 4.75
2648 2843 5.888161 CCCAAATACTTGTCTTTCTAGGCAT 59.112 40.000 0.00 0.00 35.56 4.40
2649 2844 6.378280 CCCAAATACTTGTCTTTCTAGGCATT 59.622 38.462 0.00 0.00 35.56 3.56
2650 2845 7.093771 CCCAAATACTTGTCTTTCTAGGCATTT 60.094 37.037 0.00 0.00 35.56 2.32
2651 2846 7.970614 CCAAATACTTGTCTTTCTAGGCATTTC 59.029 37.037 0.00 0.00 35.56 2.17
2652 2847 8.514594 CAAATACTTGTCTTTCTAGGCATTTCA 58.485 33.333 0.00 0.00 35.56 2.69
2653 2848 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
2654 2849 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
2655 2850 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
2656 2851 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
2657 2852 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
2658 2853 5.185635 TGTCTTTCTAGGCATTTCAAATGGG 59.814 40.000 12.14 0.00 29.10 4.00
2659 2854 4.160252 TCTTTCTAGGCATTTCAAATGGGC 59.840 41.667 12.14 5.32 0.00 5.36
2660 2855 3.386932 TCTAGGCATTTCAAATGGGCT 57.613 42.857 12.14 11.77 39.64 5.19
2661 2856 3.290710 TCTAGGCATTTCAAATGGGCTC 58.709 45.455 12.14 0.00 37.36 4.70
2662 2857 1.941377 AGGCATTTCAAATGGGCTCA 58.059 45.000 12.14 0.00 0.00 4.26
2663 2858 2.259012 AGGCATTTCAAATGGGCTCAA 58.741 42.857 12.14 0.00 0.00 3.02
2664 2859 2.027837 AGGCATTTCAAATGGGCTCAAC 60.028 45.455 12.14 0.00 0.00 3.18
2665 2860 2.289569 GGCATTTCAAATGGGCTCAACA 60.290 45.455 12.14 0.00 0.00 3.33
2666 2861 3.602483 GCATTTCAAATGGGCTCAACAT 58.398 40.909 12.14 0.00 0.00 2.71
2667 2862 4.382901 GGCATTTCAAATGGGCTCAACATA 60.383 41.667 12.14 0.00 0.00 2.29
2668 2863 4.567959 GCATTTCAAATGGGCTCAACATAC 59.432 41.667 12.14 0.00 0.00 2.39
2669 2864 4.433186 TTTCAAATGGGCTCAACATACG 57.567 40.909 0.00 0.00 0.00 3.06
2670 2865 2.364632 TCAAATGGGCTCAACATACGG 58.635 47.619 0.00 0.00 0.00 4.02
2671 2866 2.026729 TCAAATGGGCTCAACATACGGA 60.027 45.455 0.00 0.00 0.00 4.69
2672 2867 2.951642 CAAATGGGCTCAACATACGGAT 59.048 45.455 0.00 0.00 0.00 4.18
2673 2868 2.260844 ATGGGCTCAACATACGGATG 57.739 50.000 5.94 5.94 39.16 3.51
2675 2870 2.112190 TGGGCTCAACATACGGATGTA 58.888 47.619 15.10 0.00 45.93 2.29
2676 2871 2.703536 TGGGCTCAACATACGGATGTAT 59.296 45.455 15.10 1.45 45.93 2.29
2713 2908 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
2714 2909 5.536554 AGTGTAGATTCACTCATTTTGCG 57.463 39.130 0.00 0.00 44.07 4.85
2715 2910 4.091424 GTGTAGATTCACTCATTTTGCGC 58.909 43.478 0.00 0.00 35.68 6.09
2716 2911 2.927553 AGATTCACTCATTTTGCGCC 57.072 45.000 4.18 0.00 0.00 6.53
2717 2912 1.131126 AGATTCACTCATTTTGCGCCG 59.869 47.619 4.18 0.00 0.00 6.46
2718 2913 0.881118 ATTCACTCATTTTGCGCCGT 59.119 45.000 4.18 0.00 0.00 5.68
2719 2914 1.514003 TTCACTCATTTTGCGCCGTA 58.486 45.000 4.18 0.00 0.00 4.02
2720 2915 1.732941 TCACTCATTTTGCGCCGTAT 58.267 45.000 4.18 0.00 0.00 3.06
2721 2916 1.396648 TCACTCATTTTGCGCCGTATG 59.603 47.619 4.18 5.63 0.00 2.39
2722 2917 1.130373 CACTCATTTTGCGCCGTATGT 59.870 47.619 4.18 0.00 0.00 2.29
2723 2918 2.350192 CACTCATTTTGCGCCGTATGTA 59.650 45.455 4.18 0.00 0.00 2.29
2724 2919 2.607635 ACTCATTTTGCGCCGTATGTAG 59.392 45.455 4.18 7.56 0.00 2.74
2725 2920 2.607635 CTCATTTTGCGCCGTATGTAGT 59.392 45.455 4.18 0.00 0.00 2.73
2726 2921 2.605818 TCATTTTGCGCCGTATGTAGTC 59.394 45.455 4.18 0.00 0.00 2.59
2727 2922 2.081725 TTTTGCGCCGTATGTAGTCA 57.918 45.000 4.18 0.00 0.00 3.41
2728 2923 1.352114 TTTGCGCCGTATGTAGTCAC 58.648 50.000 4.18 0.00 0.00 3.67
2729 2924 0.528924 TTGCGCCGTATGTAGTCACT 59.471 50.000 4.18 0.00 0.00 3.41
2730 2925 0.528924 TGCGCCGTATGTAGTCACTT 59.471 50.000 4.18 0.00 0.00 3.16
2731 2926 0.921347 GCGCCGTATGTAGTCACTTG 59.079 55.000 0.00 0.00 0.00 3.16
2732 2927 1.734707 GCGCCGTATGTAGTCACTTGT 60.735 52.381 0.00 0.00 0.00 3.16
2733 2928 2.602878 CGCCGTATGTAGTCACTTGTT 58.397 47.619 0.00 0.00 0.00 2.83
2734 2929 2.344441 CGCCGTATGTAGTCACTTGTTG 59.656 50.000 0.00 0.00 0.00 3.33
2735 2930 3.581755 GCCGTATGTAGTCACTTGTTGA 58.418 45.455 0.00 0.00 0.00 3.18
2736 2931 3.991773 GCCGTATGTAGTCACTTGTTGAA 59.008 43.478 0.00 0.00 35.39 2.69
2737 2932 4.449743 GCCGTATGTAGTCACTTGTTGAAA 59.550 41.667 0.00 0.00 35.39 2.69
2738 2933 5.121768 GCCGTATGTAGTCACTTGTTGAAAT 59.878 40.000 0.00 0.00 35.39 2.17
2739 2934 6.672357 GCCGTATGTAGTCACTTGTTGAAATC 60.672 42.308 0.00 0.00 35.39 2.17
2740 2935 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2741 2936 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
2742 2937 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2743 2938 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2744 2939 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2745 2940 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2746 2941 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2747 2942 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2748 2943 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2749 2944 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2750 2945 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2751 2946 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2752 2947 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2753 2948 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
2754 2949 8.964476 TTGTTGAAATCTCTAGAAAGACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2765 2960 9.291664 CTCTAGAAAGACAAGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
2766 2961 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
2767 2962 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2768 2963 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2769 2964 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2770 2965 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2771 2966 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2772 2967 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2773 2968 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
2774 2969 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
2921 3116 1.180029 GCTGGGACAAATGCATCACT 58.820 50.000 0.00 0.00 38.70 3.41
3056 3255 2.559381 ACCAGAATAGGTCTCCTGCT 57.441 50.000 0.00 0.00 37.28 4.24
3077 3276 4.082895 GCTGCATCTGAATATGGAATCCAC 60.083 45.833 3.09 0.00 35.80 4.02
3116 3315 3.310774 CACCTATCTTTCTCCGCAACATG 59.689 47.826 0.00 0.00 0.00 3.21
3120 3319 5.991606 CCTATCTTTCTCCGCAACATGAATA 59.008 40.000 0.00 0.00 0.00 1.75
3159 3358 2.334838 CTGTTGGACCGTAGTTAGTGC 58.665 52.381 0.00 0.00 0.00 4.40
3307 3744 5.045140 TGCTCTTATAGTACTTGGGCCTTTT 60.045 40.000 4.53 0.00 0.00 2.27
3345 3783 1.002857 AGGGGTTTGGAGAGGATTGG 58.997 55.000 0.00 0.00 0.00 3.16
3357 3795 3.201363 AGAGGATTGGAGGGGAATTTGA 58.799 45.455 0.00 0.00 0.00 2.69
3358 3796 3.796119 AGAGGATTGGAGGGGAATTTGAT 59.204 43.478 0.00 0.00 0.00 2.57
3369 3807 9.332713 TGGAGGGGAATTTGATTTAATTTACTT 57.667 29.630 0.00 0.00 0.00 2.24
3371 3809 9.817809 GAGGGGAATTTGATTTAATTTACTTCC 57.182 33.333 0.00 0.00 0.00 3.46
3421 3859 4.407329 TCGGGACAGATAATACCCCATA 57.593 45.455 0.00 0.00 39.20 2.74
3440 3880 0.037447 AAGGAAGGGCTGAGTTGAGC 59.963 55.000 0.00 0.00 38.34 4.26
3706 4149 7.162761 TGTTCGTCCTATCTATAAGAGGAGAG 58.837 42.308 0.00 0.00 40.07 3.20
3707 4150 7.016366 TGTTCGTCCTATCTATAAGAGGAGAGA 59.984 40.741 0.00 0.00 40.07 3.10
3726 4169 8.049117 AGGAGAGAGCATATGAAAAATGTAACA 58.951 33.333 6.97 0.00 0.00 2.41
3780 4227 4.098501 GCTGGCAATTTCAGGCTTAATACT 59.901 41.667 7.44 0.00 33.16 2.12
3904 4351 2.289002 GGATCTATTCGGCTGCACTTTG 59.711 50.000 0.50 0.00 0.00 2.77
3911 4358 4.875544 TTCGGCTGCACTTTGTAATATC 57.124 40.909 0.50 0.00 0.00 1.63
3945 4393 9.607988 ATTTTTCGAAAAATAAGAAAAGGGTGT 57.392 25.926 35.70 15.94 44.36 4.16
3948 4396 7.804843 TCGAAAAATAAGAAAAGGGTGTACA 57.195 32.000 0.00 0.00 0.00 2.90
3957 4405 4.039973 AGAAAAGGGTGTACAATCTCGACA 59.960 41.667 0.00 0.00 0.00 4.35
3963 4411 6.106673 AGGGTGTACAATCTCGACAAATTAG 58.893 40.000 0.00 0.00 0.00 1.73
3968 4416 9.350357 GTGTACAATCTCGACAAATTAGTTCTA 57.650 33.333 0.00 0.00 0.00 2.10
4011 4459 1.209621 AGGCGCTTGTAGGGGATTTA 58.790 50.000 7.64 0.00 0.00 1.40
4037 4485 1.382522 CACAATCCCTGTCAATCCCG 58.617 55.000 0.00 0.00 35.47 5.14
4044 4497 1.451936 CTGTCAATCCCGATCCCCC 59.548 63.158 0.00 0.00 0.00 5.40
4052 4505 1.076995 CCCGATCCCCCTGAAAACC 60.077 63.158 0.00 0.00 0.00 3.27
4054 4507 0.394352 CCGATCCCCCTGAAAACCAG 60.394 60.000 0.00 0.00 42.55 4.00
4055 4508 1.032114 CGATCCCCCTGAAAACCAGC 61.032 60.000 0.00 0.00 41.57 4.85
4056 4509 0.039618 GATCCCCCTGAAAACCAGCA 59.960 55.000 0.00 0.00 41.57 4.41
4057 4510 0.712380 ATCCCCCTGAAAACCAGCAT 59.288 50.000 0.00 0.00 41.57 3.79
4058 4511 0.251742 TCCCCCTGAAAACCAGCATG 60.252 55.000 0.00 0.00 41.57 4.06
4122 4575 0.032678 CGCCATCGCTGATAGGAAGT 59.967 55.000 0.00 0.00 0.00 3.01
4128 4581 1.941294 TCGCTGATAGGAAGTCGACTC 59.059 52.381 20.33 12.14 0.00 3.36
4157 4610 0.884704 GAACACACACCAGCCGACAT 60.885 55.000 0.00 0.00 0.00 3.06
4172 4625 1.766494 GACATGGCCACCAATGATGA 58.234 50.000 8.16 0.00 36.95 2.92
4184 4637 2.885266 CCAATGATGAGATGCAGAAGGG 59.115 50.000 0.00 0.00 0.00 3.95
4189 4642 2.494888 TGAGATGCAGAAGGGGGATA 57.505 50.000 0.00 0.00 0.00 2.59
4194 4647 2.806945 TGCAGAAGGGGGATACAAAG 57.193 50.000 0.00 0.00 39.74 2.77
4196 4649 1.340991 GCAGAAGGGGGATACAAAGCA 60.341 52.381 0.00 0.00 39.74 3.91
4199 4652 2.852449 AGAAGGGGGATACAAAGCATGA 59.148 45.455 0.00 0.00 39.74 3.07
4206 4659 2.939103 GGATACAAAGCATGAAGTCGCT 59.061 45.455 0.00 0.00 41.20 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.763793 CCACCCAGCTATCCAGATTTAATG 59.236 45.833 0.00 0.00 0.00 1.90
28 29 4.665009 TCCACCCAGCTATCCAGATTTAAT 59.335 41.667 0.00 0.00 0.00 1.40
40 41 0.970937 CTTCCTCGTCCACCCAGCTA 60.971 60.000 0.00 0.00 0.00 3.32
42 43 2.266055 CTTCCTCGTCCACCCAGC 59.734 66.667 0.00 0.00 0.00 4.85
43 44 1.592223 GTCTTCCTCGTCCACCCAG 59.408 63.158 0.00 0.00 0.00 4.45
44 45 1.911766 GGTCTTCCTCGTCCACCCA 60.912 63.158 0.00 0.00 0.00 4.51
47 48 2.094130 CCTTTAGGTCTTCCTCGTCCAC 60.094 54.545 0.00 0.00 43.94 4.02
51 52 3.453059 TCTCCTTTAGGTCTTCCTCGT 57.547 47.619 0.00 0.00 43.94 4.18
53 54 5.866207 TGTTTTCTCCTTTAGGTCTTCCTC 58.134 41.667 0.00 0.00 43.94 3.71
84 85 3.804325 CACTTGGAGCATATGTCCTTACG 59.196 47.826 18.94 10.68 34.86 3.18
100 101 3.379372 CCATTTGGCTCACTATCACTTGG 59.621 47.826 0.00 0.00 0.00 3.61
101 102 4.095483 GTCCATTTGGCTCACTATCACTTG 59.905 45.833 0.00 0.00 34.44 3.16
102 103 4.018960 AGTCCATTTGGCTCACTATCACTT 60.019 41.667 0.00 0.00 34.44 3.16
104 105 3.624861 CAGTCCATTTGGCTCACTATCAC 59.375 47.826 0.00 0.00 34.44 3.06
108 109 1.340017 GGCAGTCCATTTGGCTCACTA 60.340 52.381 0.00 0.00 38.03 2.74
119 120 1.694169 AAGGGATCCGGCAGTCCAT 60.694 57.895 18.23 11.04 36.19 3.41
120 121 2.285368 AAGGGATCCGGCAGTCCA 60.285 61.111 18.23 0.00 36.19 4.02
126 127 0.470341 AGCTTTAGAAGGGATCCGGC 59.530 55.000 5.45 0.00 0.00 6.13
129 130 2.127708 TGGGAGCTTTAGAAGGGATCC 58.872 52.381 1.92 1.92 35.11 3.36
132 133 2.038863 TGTGGGAGCTTTAGAAGGGA 57.961 50.000 0.00 0.00 0.00 4.20
134 135 3.356529 ACATGTGGGAGCTTTAGAAGG 57.643 47.619 0.00 0.00 0.00 3.46
153 154 3.878160 TTCCACAAACCTGAACCAAAC 57.122 42.857 0.00 0.00 0.00 2.93
157 158 2.962421 TGGATTTCCACAAACCTGAACC 59.038 45.455 0.00 0.00 42.01 3.62
169 170 4.081406 CAGTCTGGATGTTTGGATTTCCA 58.919 43.478 0.00 0.00 45.94 3.53
170 171 4.082125 ACAGTCTGGATGTTTGGATTTCC 58.918 43.478 4.53 0.00 0.00 3.13
171 172 5.335976 GGAACAGTCTGGATGTTTGGATTTC 60.336 44.000 4.53 0.00 40.86 2.17
172 173 4.524328 GGAACAGTCTGGATGTTTGGATTT 59.476 41.667 4.53 0.00 40.86 2.17
173 174 4.082125 GGAACAGTCTGGATGTTTGGATT 58.918 43.478 4.53 0.00 40.86 3.01
174 175 3.690460 GGAACAGTCTGGATGTTTGGAT 58.310 45.455 4.53 0.00 40.86 3.41
175 176 2.549992 CGGAACAGTCTGGATGTTTGGA 60.550 50.000 4.53 0.00 40.86 3.53
176 177 1.806542 CGGAACAGTCTGGATGTTTGG 59.193 52.381 4.53 0.00 40.86 3.28
177 178 1.197721 GCGGAACAGTCTGGATGTTTG 59.802 52.381 4.53 0.00 40.86 2.93
178 179 1.523758 GCGGAACAGTCTGGATGTTT 58.476 50.000 4.53 0.00 40.86 2.83
179 180 0.670546 CGCGGAACAGTCTGGATGTT 60.671 55.000 4.53 0.00 43.38 2.71
180 181 1.079819 CGCGGAACAGTCTGGATGT 60.080 57.895 4.53 0.00 0.00 3.06
181 182 0.179100 ATCGCGGAACAGTCTGGATG 60.179 55.000 6.13 0.00 0.00 3.51
182 183 0.103208 GATCGCGGAACAGTCTGGAT 59.897 55.000 6.13 0.00 0.00 3.41
183 184 1.511305 GATCGCGGAACAGTCTGGA 59.489 57.895 6.13 0.00 0.00 3.86
184 185 1.874019 CGATCGCGGAACAGTCTGG 60.874 63.158 6.13 0.00 0.00 3.86
185 186 0.732880 AACGATCGCGGAACAGTCTG 60.733 55.000 16.60 0.00 43.17 3.51
186 187 0.038526 AAACGATCGCGGAACAGTCT 60.039 50.000 16.60 0.00 43.17 3.24
187 188 0.093026 CAAACGATCGCGGAACAGTC 59.907 55.000 16.60 0.00 43.17 3.51
188 189 0.319211 TCAAACGATCGCGGAACAGT 60.319 50.000 16.60 0.00 43.17 3.55
189 190 0.999406 ATCAAACGATCGCGGAACAG 59.001 50.000 16.60 0.00 43.17 3.16
190 191 0.718904 CATCAAACGATCGCGGAACA 59.281 50.000 16.60 0.00 43.17 3.18
191 192 0.586502 GCATCAAACGATCGCGGAAC 60.587 55.000 16.60 3.78 43.17 3.62
192 193 1.016653 TGCATCAAACGATCGCGGAA 61.017 50.000 16.60 0.00 43.17 4.30
193 194 0.809636 ATGCATCAAACGATCGCGGA 60.810 50.000 16.60 10.72 43.17 5.54
194 195 0.858583 TATGCATCAAACGATCGCGG 59.141 50.000 16.60 4.88 43.17 6.46
195 196 2.033747 AGTTATGCATCAAACGATCGCG 60.034 45.455 16.60 0.00 44.79 5.87
196 197 3.592381 AGTTATGCATCAAACGATCGC 57.408 42.857 16.60 0.00 0.00 4.58
197 198 4.730042 CCAAAGTTATGCATCAAACGATCG 59.270 41.667 14.88 14.88 0.00 3.69
198 199 5.879237 TCCAAAGTTATGCATCAAACGATC 58.121 37.500 0.19 0.00 0.00 3.69
199 200 5.895636 TCCAAAGTTATGCATCAAACGAT 57.104 34.783 0.19 0.00 0.00 3.73
200 201 5.392919 CCATCCAAAGTTATGCATCAAACGA 60.393 40.000 0.19 0.00 0.00 3.85
201 202 4.799949 CCATCCAAAGTTATGCATCAAACG 59.200 41.667 0.19 0.00 0.00 3.60
202 203 4.567959 GCCATCCAAAGTTATGCATCAAAC 59.432 41.667 0.19 2.88 0.00 2.93
203 204 4.222366 TGCCATCCAAAGTTATGCATCAAA 59.778 37.500 0.19 0.00 0.00 2.69
204 205 3.768215 TGCCATCCAAAGTTATGCATCAA 59.232 39.130 0.19 0.00 0.00 2.57
205 206 3.363627 TGCCATCCAAAGTTATGCATCA 58.636 40.909 0.19 0.00 0.00 3.07
206 207 4.389890 TTGCCATCCAAAGTTATGCATC 57.610 40.909 0.19 0.00 0.00 3.91
207 208 4.822685 TTTGCCATCCAAAGTTATGCAT 57.177 36.364 3.79 3.79 38.46 3.96
208 209 4.613925 TTTTGCCATCCAAAGTTATGCA 57.386 36.364 0.00 0.00 43.77 3.96
231 232 1.602237 GTCCATGTGGTCCGGACAT 59.398 57.895 34.40 18.55 46.98 3.06
248 249 2.496899 AATGCTTCTGAATGTCCGGT 57.503 45.000 0.00 0.00 0.00 5.28
249 250 3.191162 TCAAAATGCTTCTGAATGTCCGG 59.809 43.478 0.00 0.00 0.00 5.14
261 262 4.501915 CCAACACAGTCCATCAAAATGCTT 60.502 41.667 0.00 0.00 0.00 3.91
262 263 3.006110 CCAACACAGTCCATCAAAATGCT 59.994 43.478 0.00 0.00 0.00 3.79
265 266 4.728772 TCTCCAACACAGTCCATCAAAAT 58.271 39.130 0.00 0.00 0.00 1.82
273 274 0.678048 GGGCATCTCCAACACAGTCC 60.678 60.000 0.00 0.00 36.21 3.85
276 277 2.787473 TAAGGGCATCTCCAACACAG 57.213 50.000 0.00 0.00 36.21 3.66
284 285 6.323482 TGATCAGATAGCTATAAGGGCATCTC 59.677 42.308 6.13 0.00 30.96 2.75
297 298 8.694540 GGAAGTATGTATGATGATCAGATAGCT 58.305 37.037 0.09 0.00 0.00 3.32
298 299 7.925483 GGGAAGTATGTATGATGATCAGATAGC 59.075 40.741 0.09 0.00 0.00 2.97
305 306 6.825721 GGATTGGGGAAGTATGTATGATGATC 59.174 42.308 0.00 0.00 0.00 2.92
312 313 7.648177 ACTAATGGATTGGGGAAGTATGTAT 57.352 36.000 0.00 0.00 0.00 2.29
315 316 5.940470 GCTACTAATGGATTGGGGAAGTATG 59.060 44.000 0.00 0.00 0.00 2.39
316 317 5.852250 AGCTACTAATGGATTGGGGAAGTAT 59.148 40.000 0.00 0.00 0.00 2.12
317 318 5.224441 AGCTACTAATGGATTGGGGAAGTA 58.776 41.667 0.00 0.00 0.00 2.24
322 323 7.505585 TGAAAATTAGCTACTAATGGATTGGGG 59.494 37.037 0.00 0.00 36.85 4.96
343 347 7.446001 AACAAAGCCTCAAAAATTGTGAAAA 57.554 28.000 0.00 0.00 34.67 2.29
353 357 3.949113 ACTAACCGAACAAAGCCTCAAAA 59.051 39.130 0.00 0.00 0.00 2.44
354 358 3.547746 ACTAACCGAACAAAGCCTCAAA 58.452 40.909 0.00 0.00 0.00 2.69
357 361 3.259902 CCTACTAACCGAACAAAGCCTC 58.740 50.000 0.00 0.00 0.00 4.70
362 366 3.839490 TGGATCCCTACTAACCGAACAAA 59.161 43.478 9.90 0.00 0.00 2.83
404 408 1.079127 GCTCGGTAGGTGCATGTGT 60.079 57.895 0.00 0.00 0.00 3.72
409 413 2.056223 GTAGGGCTCGGTAGGTGCA 61.056 63.158 0.00 0.00 0.00 4.57
416 420 3.066814 GGTCGTGTAGGGCTCGGT 61.067 66.667 0.00 0.00 35.12 4.69
419 423 0.103208 CATGAGGTCGTGTAGGGCTC 59.897 60.000 0.00 0.00 0.00 4.70
453 457 6.491394 TCTTGTGAAATCCAACAACTTTACG 58.509 36.000 0.00 0.00 0.00 3.18
455 459 6.460953 GCCTCTTGTGAAATCCAACAACTTTA 60.461 38.462 0.00 0.00 0.00 1.85
461 465 2.238521 GGCCTCTTGTGAAATCCAACA 58.761 47.619 0.00 0.00 0.00 3.33
472 476 0.258774 AGTTTGGTGTGGCCTCTTGT 59.741 50.000 3.32 0.00 38.35 3.16
475 479 3.222603 CTTAAAGTTTGGTGTGGCCTCT 58.777 45.455 3.32 0.00 38.35 3.69
478 482 5.462530 AATACTTAAAGTTTGGTGTGGCC 57.537 39.130 0.00 0.00 37.90 5.36
480 484 8.710835 AAACAAATACTTAAAGTTTGGTGTGG 57.289 30.769 0.00 0.00 37.20 4.17
501 505 7.803279 ACAAAACCACCAAGTTTTAAAAACA 57.197 28.000 1.31 0.00 45.73 2.83
550 554 9.153721 TGTCTAAAACGTCTTACAAAAGAGAAA 57.846 29.630 0.00 0.00 42.40 2.52
551 555 8.706492 TGTCTAAAACGTCTTACAAAAGAGAA 57.294 30.769 0.00 0.00 42.40 2.87
552 556 7.437267 CCTGTCTAAAACGTCTTACAAAAGAGA 59.563 37.037 0.00 0.00 42.40 3.10
553 557 7.224167 ACCTGTCTAAAACGTCTTACAAAAGAG 59.776 37.037 0.00 0.00 42.40 2.85
554 558 7.043565 ACCTGTCTAAAACGTCTTACAAAAGA 58.956 34.615 0.00 0.00 39.47 2.52
555 559 7.010738 TGACCTGTCTAAAACGTCTTACAAAAG 59.989 37.037 0.00 0.00 0.00 2.27
556 560 6.817641 TGACCTGTCTAAAACGTCTTACAAAA 59.182 34.615 0.00 0.00 0.00 2.44
557 561 6.339730 TGACCTGTCTAAAACGTCTTACAAA 58.660 36.000 0.00 0.00 0.00 2.83
558 562 5.904941 TGACCTGTCTAAAACGTCTTACAA 58.095 37.500 0.00 0.00 0.00 2.41
559 563 5.300034 TCTGACCTGTCTAAAACGTCTTACA 59.700 40.000 0.00 0.00 0.00 2.41
560 564 5.766222 TCTGACCTGTCTAAAACGTCTTAC 58.234 41.667 0.00 0.00 0.00 2.34
561 565 6.585695 ATCTGACCTGTCTAAAACGTCTTA 57.414 37.500 0.00 0.00 0.00 2.10
562 566 4.931661 TCTGACCTGTCTAAAACGTCTT 57.068 40.909 0.00 0.00 0.00 3.01
563 567 5.221461 ACAATCTGACCTGTCTAAAACGTCT 60.221 40.000 0.00 0.00 0.00 4.18
564 568 4.989168 ACAATCTGACCTGTCTAAAACGTC 59.011 41.667 0.00 0.00 0.00 4.34
565 569 4.957296 ACAATCTGACCTGTCTAAAACGT 58.043 39.130 0.00 0.00 0.00 3.99
566 570 5.517037 GACAATCTGACCTGTCTAAAACG 57.483 43.478 12.27 0.00 39.11 3.60
578 582 7.224753 TGTTTTAGACAACTCAGACAATCTGAC 59.775 37.037 4.40 0.00 40.89 3.51
579 583 7.272244 TGTTTTAGACAACTCAGACAATCTGA 58.728 34.615 8.21 8.21 42.29 3.27
580 584 7.482654 TGTTTTAGACAACTCAGACAATCTG 57.517 36.000 0.00 0.00 39.51 2.90
581 585 8.153550 AGATGTTTTAGACAACTCAGACAATCT 58.846 33.333 0.00 0.00 42.62 2.40
582 586 8.316640 AGATGTTTTAGACAACTCAGACAATC 57.683 34.615 0.00 0.00 42.62 2.67
583 587 8.682936 AAGATGTTTTAGACAACTCAGACAAT 57.317 30.769 0.00 0.00 40.12 2.71
584 588 9.261180 CTAAGATGTTTTAGACAACTCAGACAA 57.739 33.333 0.00 0.00 40.12 3.18
585 589 7.872993 CCTAAGATGTTTTAGACAACTCAGACA 59.127 37.037 0.00 0.00 40.12 3.41
586 590 8.088981 TCCTAAGATGTTTTAGACAACTCAGAC 58.911 37.037 0.00 0.00 40.12 3.51
587 591 8.190326 TCCTAAGATGTTTTAGACAACTCAGA 57.810 34.615 0.00 0.00 40.12 3.27
588 592 8.833231 TTCCTAAGATGTTTTAGACAACTCAG 57.167 34.615 0.00 0.00 40.12 3.35
589 593 9.273016 CTTTCCTAAGATGTTTTAGACAACTCA 57.727 33.333 0.00 0.00 40.12 3.41
590 594 9.274206 ACTTTCCTAAGATGTTTTAGACAACTC 57.726 33.333 0.00 0.00 40.12 3.01
591 595 9.057089 CACTTTCCTAAGATGTTTTAGACAACT 57.943 33.333 0.00 0.00 42.51 3.16
592 596 9.052759 TCACTTTCCTAAGATGTTTTAGACAAC 57.947 33.333 0.00 0.00 37.00 3.32
593 597 9.621629 TTCACTTTCCTAAGATGTTTTAGACAA 57.378 29.630 0.00 0.00 37.00 3.18
594 598 9.052759 GTTCACTTTCCTAAGATGTTTTAGACA 57.947 33.333 0.00 0.00 37.46 3.41
595 599 9.274206 AGTTCACTTTCCTAAGATGTTTTAGAC 57.726 33.333 0.00 0.00 33.42 2.59
596 600 9.273016 CAGTTCACTTTCCTAAGATGTTTTAGA 57.727 33.333 0.00 0.00 33.42 2.10
597 601 9.273016 TCAGTTCACTTTCCTAAGATGTTTTAG 57.727 33.333 0.00 0.00 35.30 1.85
598 602 9.273016 CTCAGTTCACTTTCCTAAGATGTTTTA 57.727 33.333 0.00 0.00 35.30 1.52
599 603 7.993183 TCTCAGTTCACTTTCCTAAGATGTTTT 59.007 33.333 0.00 0.00 35.30 2.43
600 604 7.509546 TCTCAGTTCACTTTCCTAAGATGTTT 58.490 34.615 0.00 0.00 35.30 2.83
601 605 7.015682 TCTCTCAGTTCACTTTCCTAAGATGTT 59.984 37.037 0.00 0.00 35.30 2.71
602 606 6.495181 TCTCTCAGTTCACTTTCCTAAGATGT 59.505 38.462 0.00 0.00 35.30 3.06
603 607 6.929625 TCTCTCAGTTCACTTTCCTAAGATG 58.070 40.000 0.00 0.00 35.30 2.90
604 608 6.723977 ACTCTCTCAGTTCACTTTCCTAAGAT 59.276 38.462 0.00 0.00 30.98 2.40
605 609 6.071984 ACTCTCTCAGTTCACTTTCCTAAGA 58.928 40.000 0.00 0.00 30.98 2.10
606 610 6.339587 ACTCTCTCAGTTCACTTTCCTAAG 57.660 41.667 0.00 0.00 32.17 2.18
607 611 7.834881 TTACTCTCTCAGTTCACTTTCCTAA 57.165 36.000 0.00 0.00 36.43 2.69
608 612 9.702253 ATATTACTCTCTCAGTTCACTTTCCTA 57.298 33.333 0.00 0.00 36.43 2.94
609 613 6.926630 ATTACTCTCTCAGTTCACTTTCCT 57.073 37.500 0.00 0.00 36.43 3.36
714 728 7.873505 GCTCTTATATTATGAAACGAAGGGAGT 59.126 37.037 0.00 0.00 0.00 3.85
715 729 7.062371 CGCTCTTATATTATGAAACGAAGGGAG 59.938 40.741 0.00 0.00 0.00 4.30
716 730 6.866770 CGCTCTTATATTATGAAACGAAGGGA 59.133 38.462 0.00 0.00 0.00 4.20
717 731 6.401153 GCGCTCTTATATTATGAAACGAAGGG 60.401 42.308 0.00 0.00 0.00 3.95
718 732 6.366332 AGCGCTCTTATATTATGAAACGAAGG 59.634 38.462 2.64 0.00 0.00 3.46
719 733 7.339732 AGCGCTCTTATATTATGAAACGAAG 57.660 36.000 2.64 0.00 0.00 3.79
720 734 7.709269 AAGCGCTCTTATATTATGAAACGAA 57.291 32.000 12.06 0.00 0.00 3.85
721 735 7.709269 AAAGCGCTCTTATATTATGAAACGA 57.291 32.000 12.06 0.00 31.02 3.85
722 736 8.767944 AAAAAGCGCTCTTATATTATGAAACG 57.232 30.769 12.06 0.00 31.02 3.60
726 740 9.542462 AGTGTAAAAAGCGCTCTTATATTATGA 57.458 29.630 12.06 0.00 31.02 2.15
729 743 9.472361 CCTAGTGTAAAAAGCGCTCTTATATTA 57.528 33.333 12.06 10.08 31.02 0.98
730 744 7.441458 CCCTAGTGTAAAAAGCGCTCTTATATT 59.559 37.037 12.06 9.47 31.02 1.28
731 745 6.929606 CCCTAGTGTAAAAAGCGCTCTTATAT 59.070 38.462 12.06 4.96 31.02 0.86
732 746 6.278363 CCCTAGTGTAAAAAGCGCTCTTATA 58.722 40.000 12.06 7.48 31.02 0.98
733 747 5.116882 CCCTAGTGTAAAAAGCGCTCTTAT 58.883 41.667 12.06 0.00 31.02 1.73
734 748 4.501071 CCCTAGTGTAAAAAGCGCTCTTA 58.499 43.478 12.06 9.23 31.02 2.10
735 749 3.335579 CCCTAGTGTAAAAAGCGCTCTT 58.664 45.455 12.06 10.38 0.00 2.85
736 750 2.935676 GCCCTAGTGTAAAAAGCGCTCT 60.936 50.000 12.06 3.67 0.00 4.09
737 751 1.397343 GCCCTAGTGTAAAAAGCGCTC 59.603 52.381 12.06 0.00 0.00 5.03
738 752 1.271163 TGCCCTAGTGTAAAAAGCGCT 60.271 47.619 2.64 2.64 0.00 5.92
739 753 1.130561 CTGCCCTAGTGTAAAAAGCGC 59.869 52.381 0.00 0.00 0.00 5.92
740 754 2.423577 ACTGCCCTAGTGTAAAAAGCG 58.576 47.619 0.00 0.00 38.49 4.68
750 764 2.218603 CGTTTTTGACACTGCCCTAGT 58.781 47.619 0.00 0.00 41.36 2.57
751 765 2.218603 ACGTTTTTGACACTGCCCTAG 58.781 47.619 0.00 0.00 0.00 3.02
752 766 2.335316 ACGTTTTTGACACTGCCCTA 57.665 45.000 0.00 0.00 0.00 3.53
753 767 2.335316 TACGTTTTTGACACTGCCCT 57.665 45.000 0.00 0.00 0.00 5.19
754 768 3.636282 AATACGTTTTTGACACTGCCC 57.364 42.857 0.00 0.00 0.00 5.36
755 769 5.092781 CCATAATACGTTTTTGACACTGCC 58.907 41.667 0.00 0.00 0.00 4.85
756 770 5.933790 TCCATAATACGTTTTTGACACTGC 58.066 37.500 0.00 0.00 0.00 4.40
757 771 7.021196 CCTTCCATAATACGTTTTTGACACTG 58.979 38.462 0.00 0.00 0.00 3.66
758 772 6.150474 CCCTTCCATAATACGTTTTTGACACT 59.850 38.462 0.00 0.00 0.00 3.55
759 773 6.149807 TCCCTTCCATAATACGTTTTTGACAC 59.850 38.462 0.00 0.00 0.00 3.67
760 774 6.239396 TCCCTTCCATAATACGTTTTTGACA 58.761 36.000 0.00 0.00 0.00 3.58
761 775 6.183360 CCTCCCTTCCATAATACGTTTTTGAC 60.183 42.308 0.00 0.00 0.00 3.18
762 776 5.883673 CCTCCCTTCCATAATACGTTTTTGA 59.116 40.000 0.00 0.00 0.00 2.69
763 777 5.067283 CCCTCCCTTCCATAATACGTTTTTG 59.933 44.000 0.00 0.00 0.00 2.44
764 778 5.044698 TCCCTCCCTTCCATAATACGTTTTT 60.045 40.000 0.00 0.00 0.00 1.94
765 779 4.475747 TCCCTCCCTTCCATAATACGTTTT 59.524 41.667 0.00 0.00 0.00 2.43
766 780 4.042174 TCCCTCCCTTCCATAATACGTTT 58.958 43.478 0.00 0.00 0.00 3.60
767 781 3.646637 CTCCCTCCCTTCCATAATACGTT 59.353 47.826 0.00 0.00 0.00 3.99
768 782 3.240302 CTCCCTCCCTTCCATAATACGT 58.760 50.000 0.00 0.00 0.00 3.57
769 783 3.240302 ACTCCCTCCCTTCCATAATACG 58.760 50.000 0.00 0.00 0.00 3.06
770 784 6.758806 TTTACTCCCTCCCTTCCATAATAC 57.241 41.667 0.00 0.00 0.00 1.89
771 785 7.774694 TTTTTACTCCCTCCCTTCCATAATA 57.225 36.000 0.00 0.00 0.00 0.98
772 786 6.668133 TTTTTACTCCCTCCCTTCCATAAT 57.332 37.500 0.00 0.00 0.00 1.28
773 787 6.450352 AGATTTTTACTCCCTCCCTTCCATAA 59.550 38.462 0.00 0.00 0.00 1.90
774 788 5.976870 AGATTTTTACTCCCTCCCTTCCATA 59.023 40.000 0.00 0.00 0.00 2.74
775 789 4.796265 AGATTTTTACTCCCTCCCTTCCAT 59.204 41.667 0.00 0.00 0.00 3.41
776 790 4.183916 AGATTTTTACTCCCTCCCTTCCA 58.816 43.478 0.00 0.00 0.00 3.53
777 791 4.864483 AGATTTTTACTCCCTCCCTTCC 57.136 45.455 0.00 0.00 0.00 3.46
778 792 5.105023 ACGTAGATTTTTACTCCCTCCCTTC 60.105 44.000 0.00 0.00 0.00 3.46
779 793 4.781621 ACGTAGATTTTTACTCCCTCCCTT 59.218 41.667 0.00 0.00 0.00 3.95
780 794 4.161754 CACGTAGATTTTTACTCCCTCCCT 59.838 45.833 0.00 0.00 0.00 4.20
781 795 4.081254 ACACGTAGATTTTTACTCCCTCCC 60.081 45.833 0.00 0.00 0.00 4.30
782 796 5.082251 ACACGTAGATTTTTACTCCCTCC 57.918 43.478 0.00 0.00 0.00 4.30
783 797 5.350640 CCAACACGTAGATTTTTACTCCCTC 59.649 44.000 0.00 0.00 0.00 4.30
784 798 5.012354 TCCAACACGTAGATTTTTACTCCCT 59.988 40.000 0.00 0.00 0.00 4.20
785 799 5.240121 TCCAACACGTAGATTTTTACTCCC 58.760 41.667 0.00 0.00 0.00 4.30
786 800 6.980051 ATCCAACACGTAGATTTTTACTCC 57.020 37.500 0.00 0.00 0.00 3.85
815 829 0.796312 ATCGGACACAAACGCACATC 59.204 50.000 0.00 0.00 0.00 3.06
817 831 1.502990 CCATCGGACACAAACGCACA 61.503 55.000 0.00 0.00 0.00 4.57
897 1023 2.325583 TAGAGCAAAATAGGGCCGTG 57.674 50.000 8.57 0.00 0.00 4.94
907 1033 3.863424 GGATCGAACACGATAGAGCAAAA 59.137 43.478 5.14 0.00 44.97 2.44
912 1038 5.859114 CCTATTTGGATCGAACACGATAGAG 59.141 44.000 16.41 0.00 44.97 2.43
944 1085 4.082125 TCTTTTCCTTTTGATGAGGAGGC 58.918 43.478 0.00 0.00 43.79 4.70
975 1116 2.291865 GGAGGAAGGGAGGATGCTTTTT 60.292 50.000 0.00 0.00 0.00 1.94
976 1117 1.286257 GGAGGAAGGGAGGATGCTTTT 59.714 52.381 0.00 0.00 0.00 2.27
977 1118 0.922626 GGAGGAAGGGAGGATGCTTT 59.077 55.000 0.00 0.00 0.00 3.51
978 1119 0.253347 TGGAGGAAGGGAGGATGCTT 60.253 55.000 0.00 0.00 0.00 3.91
979 1120 0.029267 ATGGAGGAAGGGAGGATGCT 60.029 55.000 0.00 0.00 0.00 3.79
1015 1156 0.693049 TCCCCTGGAGCAAGAAAGAC 59.307 55.000 0.00 0.00 0.00 3.01
1053 1194 4.154347 CAGACGGGCAGAGGGAGC 62.154 72.222 0.00 0.00 0.00 4.70
1079 1226 2.765135 CTCCTGCAATCTCCTCTCTTCA 59.235 50.000 0.00 0.00 0.00 3.02
1202 1373 1.614241 CCCCTGTTACCCCGACTGAG 61.614 65.000 0.00 0.00 0.00 3.35
1261 1432 1.787847 CTGCGCTACAAACGAAGGG 59.212 57.895 9.73 0.00 32.26 3.95
1266 1437 0.656205 AAAACGCTGCGCTACAAACG 60.656 50.000 23.51 5.86 34.83 3.60
1272 1443 0.942410 AGAACGAAAACGCTGCGCTA 60.942 50.000 23.51 0.00 0.00 4.26
1286 1457 0.860533 TTACCGCCGAAAACAGAACG 59.139 50.000 0.00 0.00 0.00 3.95
1325 1496 0.883153 TCATCCTTTTCCGTCGACGA 59.117 50.000 37.65 21.13 43.02 4.20
1333 1504 4.203226 GGAGTTCCAGATCATCCTTTTCC 58.797 47.826 0.00 0.00 35.64 3.13
1337 1508 3.142579 AGGGAGTTCCAGATCATCCTT 57.857 47.619 0.00 0.00 38.24 3.36
1350 1526 1.137697 ACGAAGGGTTGAAGGGAGTT 58.862 50.000 0.00 0.00 0.00 3.01
1351 1527 0.396811 CACGAAGGGTTGAAGGGAGT 59.603 55.000 0.00 0.00 0.00 3.85
1361 1537 1.539827 GCAAAATACAGCACGAAGGGT 59.460 47.619 0.00 0.00 0.00 4.34
1438 1614 2.016961 CCGACGGATTTGCATGAGG 58.983 57.895 8.64 0.00 0.00 3.86
1441 1617 2.023181 CGCCGACGGATTTGCATG 59.977 61.111 20.50 0.00 34.97 4.06
1442 1618 2.435938 ACGCCGACGGATTTGCAT 60.436 55.556 20.50 0.00 46.04 3.96
1500 1676 2.975489 CAGGAGCACTATCACCCCTAAT 59.025 50.000 0.00 0.00 0.00 1.73
1506 1682 3.618690 AAGTTCAGGAGCACTATCACC 57.381 47.619 0.00 0.00 0.00 4.02
1512 1688 4.390264 GAACCTAAAAGTTCAGGAGCACT 58.610 43.478 9.83 0.00 44.55 4.40
1721 1897 0.179124 CGCCAGAAGCTCAGACTACC 60.179 60.000 0.00 0.00 40.39 3.18
1723 1899 0.612174 ACCGCCAGAAGCTCAGACTA 60.612 55.000 0.00 0.00 40.39 2.59
1728 1904 0.612174 ACTCTACCGCCAGAAGCTCA 60.612 55.000 0.00 0.00 40.39 4.26
1729 1905 0.533032 AACTCTACCGCCAGAAGCTC 59.467 55.000 0.00 0.00 40.39 4.09
1740 1916 3.087370 AGGAATTGGGCAAACTCTACC 57.913 47.619 0.00 0.00 0.00 3.18
1751 1927 5.316987 AGTTCTTCTACACAAGGAATTGGG 58.683 41.667 0.00 0.00 0.00 4.12
1806 1989 4.260538 GCTGCTTGAAACCAGATAGATTCG 60.261 45.833 0.00 0.00 0.00 3.34
1886 2069 5.012768 TCCTTGTACCCTCCAAGTAAAAGAG 59.987 44.000 3.02 0.00 37.25 2.85
1920 2103 1.336755 CCAGAAAACCAAAGACCACGG 59.663 52.381 0.00 0.00 0.00 4.94
1954 2138 6.372659 CCACCTAATGAGCCATGTATATTCAC 59.627 42.308 0.00 0.00 0.00 3.18
2373 2560 6.073548 GGAACATAAGCTTCCAAGATATGACG 60.074 42.308 0.00 0.00 37.68 4.35
2377 2564 6.126361 ACCAGGAACATAAGCTTCCAAGATAT 60.126 38.462 0.00 0.00 39.91 1.63
2378 2565 5.191722 ACCAGGAACATAAGCTTCCAAGATA 59.808 40.000 0.00 0.00 39.91 1.98
2438 2625 3.747099 ATTAAACGTGCACTCTGATGC 57.253 42.857 16.19 5.49 46.32 3.91
2448 2635 2.475022 GGGTCGCAACTATTAAACGTGC 60.475 50.000 0.00 0.00 0.00 5.34
2464 2651 5.959618 ATTTTTCCTCTTAAGTTGGGTCG 57.040 39.130 14.16 0.00 0.00 4.79
2465 2652 6.377429 CCCTATTTTTCCTCTTAAGTTGGGTC 59.623 42.308 14.16 0.00 0.00 4.46
2621 2816 6.127980 GCCTAGAAAGACAAGTATTTGGGAAC 60.128 42.308 2.81 0.00 38.66 3.62
2622 2817 5.944007 GCCTAGAAAGACAAGTATTTGGGAA 59.056 40.000 2.81 0.00 38.66 3.97
2623 2818 5.013704 TGCCTAGAAAGACAAGTATTTGGGA 59.986 40.000 2.81 0.00 38.66 4.37
2624 2819 5.253330 TGCCTAGAAAGACAAGTATTTGGG 58.747 41.667 2.81 0.00 38.66 4.12
2625 2820 7.396540 AATGCCTAGAAAGACAAGTATTTGG 57.603 36.000 2.81 0.00 38.66 3.28
2626 2821 8.514594 TGAAATGCCTAGAAAGACAAGTATTTG 58.485 33.333 0.00 0.00 40.24 2.32
2627 2822 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
2628 2823 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
2629 2824 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
2630 2825 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
2631 2826 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
2632 2827 6.810182 CCATTTGAAATGCCTAGAAAGACAAG 59.190 38.462 12.26 0.00 0.00 3.16
2633 2828 6.295236 CCCATTTGAAATGCCTAGAAAGACAA 60.295 38.462 12.26 0.00 0.00 3.18
2634 2829 5.185635 CCCATTTGAAATGCCTAGAAAGACA 59.814 40.000 12.26 0.00 0.00 3.41
2635 2830 5.654497 CCCATTTGAAATGCCTAGAAAGAC 58.346 41.667 12.26 0.00 0.00 3.01
2636 2831 4.160252 GCCCATTTGAAATGCCTAGAAAGA 59.840 41.667 12.26 0.00 0.00 2.52
2637 2832 4.161001 AGCCCATTTGAAATGCCTAGAAAG 59.839 41.667 12.26 0.00 0.00 2.62
2638 2833 4.095946 AGCCCATTTGAAATGCCTAGAAA 58.904 39.130 12.26 0.00 0.00 2.52
2639 2834 3.701040 GAGCCCATTTGAAATGCCTAGAA 59.299 43.478 12.26 0.00 0.00 2.10
2640 2835 3.290710 GAGCCCATTTGAAATGCCTAGA 58.709 45.455 12.26 0.00 0.00 2.43
2641 2836 3.025978 TGAGCCCATTTGAAATGCCTAG 58.974 45.455 12.26 2.44 0.00 3.02
2642 2837 3.098774 TGAGCCCATTTGAAATGCCTA 57.901 42.857 12.26 0.00 0.00 3.93
2643 2838 1.941377 TGAGCCCATTTGAAATGCCT 58.059 45.000 12.26 10.08 0.00 4.75
2644 2839 2.289569 TGTTGAGCCCATTTGAAATGCC 60.290 45.455 12.26 5.68 0.00 4.40
2645 2840 3.042871 TGTTGAGCCCATTTGAAATGC 57.957 42.857 12.26 2.38 0.00 3.56
2646 2841 4.799949 CGTATGTTGAGCCCATTTGAAATG 59.200 41.667 10.84 10.84 0.00 2.32
2647 2842 4.142182 CCGTATGTTGAGCCCATTTGAAAT 60.142 41.667 0.00 0.00 0.00 2.17
2648 2843 3.192422 CCGTATGTTGAGCCCATTTGAAA 59.808 43.478 0.00 0.00 0.00 2.69
2649 2844 2.752354 CCGTATGTTGAGCCCATTTGAA 59.248 45.455 0.00 0.00 0.00 2.69
2650 2845 2.026729 TCCGTATGTTGAGCCCATTTGA 60.027 45.455 0.00 0.00 0.00 2.69
2651 2846 2.364632 TCCGTATGTTGAGCCCATTTG 58.635 47.619 0.00 0.00 0.00 2.32
2652 2847 2.799126 TCCGTATGTTGAGCCCATTT 57.201 45.000 0.00 0.00 0.00 2.32
2653 2848 2.092429 ACATCCGTATGTTGAGCCCATT 60.092 45.455 0.00 0.00 44.07 3.16
2654 2849 1.490490 ACATCCGTATGTTGAGCCCAT 59.510 47.619 0.00 0.00 44.07 4.00
2655 2850 0.908910 ACATCCGTATGTTGAGCCCA 59.091 50.000 0.00 0.00 44.07 5.36
2656 2851 2.902705 TACATCCGTATGTTGAGCCC 57.097 50.000 0.00 0.00 44.07 5.19
2693 2888 4.091424 GCGCAAAATGAGTGAATCTACAC 58.909 43.478 0.30 0.00 40.60 2.90
2694 2889 3.126858 GGCGCAAAATGAGTGAATCTACA 59.873 43.478 10.83 0.00 0.00 2.74
2695 2890 3.685058 GGCGCAAAATGAGTGAATCTAC 58.315 45.455 10.83 0.00 0.00 2.59
2696 2891 2.351418 CGGCGCAAAATGAGTGAATCTA 59.649 45.455 10.83 0.00 0.00 1.98
2697 2892 1.131126 CGGCGCAAAATGAGTGAATCT 59.869 47.619 10.83 0.00 0.00 2.40
2698 2893 1.135689 ACGGCGCAAAATGAGTGAATC 60.136 47.619 10.83 0.00 0.00 2.52
2699 2894 0.881118 ACGGCGCAAAATGAGTGAAT 59.119 45.000 10.83 0.00 0.00 2.57
2700 2895 1.514003 TACGGCGCAAAATGAGTGAA 58.486 45.000 10.83 0.00 0.00 3.18
2701 2896 1.396648 CATACGGCGCAAAATGAGTGA 59.603 47.619 10.83 0.00 0.00 3.41
2702 2897 1.130373 ACATACGGCGCAAAATGAGTG 59.870 47.619 10.83 0.00 0.00 3.51
2703 2898 1.448985 ACATACGGCGCAAAATGAGT 58.551 45.000 10.83 0.00 0.00 3.41
2704 2899 2.607635 ACTACATACGGCGCAAAATGAG 59.392 45.455 10.83 10.39 0.00 2.90
2705 2900 2.605818 GACTACATACGGCGCAAAATGA 59.394 45.455 10.83 0.00 0.00 2.57
2706 2901 2.350192 TGACTACATACGGCGCAAAATG 59.650 45.455 10.83 11.57 0.00 2.32
2707 2902 2.350498 GTGACTACATACGGCGCAAAAT 59.650 45.455 10.83 0.00 0.00 1.82
2708 2903 1.727880 GTGACTACATACGGCGCAAAA 59.272 47.619 10.83 0.00 0.00 2.44
2709 2904 1.067425 AGTGACTACATACGGCGCAAA 60.067 47.619 10.83 0.00 0.00 3.68
2710 2905 0.528924 AGTGACTACATACGGCGCAA 59.471 50.000 10.83 0.00 0.00 4.85
2711 2906 0.528924 AAGTGACTACATACGGCGCA 59.471 50.000 10.83 0.00 0.00 6.09
2712 2907 0.921347 CAAGTGACTACATACGGCGC 59.079 55.000 6.90 0.00 0.00 6.53
2713 2908 2.273370 ACAAGTGACTACATACGGCG 57.727 50.000 4.80 4.80 0.00 6.46
2714 2909 3.581755 TCAACAAGTGACTACATACGGC 58.418 45.455 0.00 0.00 0.00 5.68
2715 2910 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2716 2911 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2717 2912 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2719 2914 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2720 2915 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2721 2916 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2722 2917 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2723 2918 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2724 2919 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2725 2920 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2726 2921 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2727 2922 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2728 2923 9.050601 ACTTGTCTTTCTAGAGATTTCAACAAG 57.949 33.333 18.42 18.42 32.73 3.16
2729 2924 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
2739 2934 9.291664 CGTTCCTAAATACTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
2740 2935 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
2741 2936 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
2742 2937 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
2743 2938 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
2744 2939 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2745 2940 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2746 2941 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2747 2942 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2748 2943 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
2749 2944 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
2750 2945 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
2751 2946 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
2752 2947 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2753 2948 6.416631 AATACTCCCTCCGTTCCTAAATAC 57.583 41.667 0.00 0.00 0.00 1.89
2754 2949 7.441903 AAAATACTCCCTCCGTTCCTAAATA 57.558 36.000 0.00 0.00 0.00 1.40
2755 2950 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
2756 2951 5.767277 AAAATACTCCCTCCGTTCCTAAA 57.233 39.130 0.00 0.00 0.00 1.85
2757 2952 5.721000 TGTAAAATACTCCCTCCGTTCCTAA 59.279 40.000 0.00 0.00 0.00 2.69
2758 2953 5.271598 TGTAAAATACTCCCTCCGTTCCTA 58.728 41.667 0.00 0.00 0.00 2.94
2759 2954 4.098894 TGTAAAATACTCCCTCCGTTCCT 58.901 43.478 0.00 0.00 0.00 3.36
2760 2955 4.476628 TGTAAAATACTCCCTCCGTTCC 57.523 45.455 0.00 0.00 0.00 3.62
2761 2956 6.822170 AGATTTGTAAAATACTCCCTCCGTTC 59.178 38.462 0.00 0.00 0.00 3.95
2762 2957 6.718294 AGATTTGTAAAATACTCCCTCCGTT 58.282 36.000 0.00 0.00 0.00 4.44
2763 2958 6.156429 AGAGATTTGTAAAATACTCCCTCCGT 59.844 38.462 0.00 0.00 0.00 4.69
2764 2959 6.583562 AGAGATTTGTAAAATACTCCCTCCG 58.416 40.000 0.00 0.00 0.00 4.63
2921 3116 2.586245 CTGCTCCCGATGCTTCCA 59.414 61.111 0.00 0.00 0.00 3.53
3056 3255 5.314718 AGTGGATTCCATATTCAGATGCA 57.685 39.130 9.01 0.00 35.28 3.96
3077 3276 3.679389 AGGTGGTTTGCATCAACTCTAG 58.321 45.455 1.52 0.00 0.00 2.43
3120 3319 7.821846 TCCAACAGCAAAAGAAGTAACAAAATT 59.178 29.630 0.00 0.00 0.00 1.82
3159 3358 1.685302 CAAATTTCTGGCAACCGTCG 58.315 50.000 0.00 0.00 0.00 5.12
3267 3466 5.700402 AAGAGCAGGGTGTTTCATACTAT 57.300 39.130 0.00 0.00 0.00 2.12
3307 3744 2.642807 CCTAGGAGGAGGTTGAACCAAA 59.357 50.000 17.83 0.00 41.95 3.28
3310 3747 1.205055 CCCTAGGAGGAGGTTGAACC 58.795 60.000 11.48 6.16 37.67 3.62
3345 3783 9.817809 GGAAGTAAATTAAATCAAATTCCCCTC 57.182 33.333 0.00 0.00 0.00 4.30
3421 3859 0.037447 GCTCAACTCAGCCCTTCCTT 59.963 55.000 0.00 0.00 32.76 3.36
3538 3978 8.093927 TGAAAGACTTCCTTTGTTGAAATGTTT 58.906 29.630 0.00 0.00 44.63 2.83
3647 4090 3.842732 TTCGATCACTTACTTCGCTCA 57.157 42.857 0.00 0.00 33.08 4.26
3842 4289 0.180406 ACTCGCACACACTCCCTTTT 59.820 50.000 0.00 0.00 0.00 2.27
3977 4425 4.623932 AGCGCCTTCCATATGATTTCTA 57.376 40.909 2.29 0.00 0.00 2.10
3994 4442 2.552743 GGATTAAATCCCCTACAAGCGC 59.447 50.000 0.00 0.00 43.88 5.92
4011 4459 0.631212 GACAGGGATTGTGGGGGATT 59.369 55.000 0.00 0.00 41.05 3.01
4016 4464 1.686115 GGGATTGACAGGGATTGTGGG 60.686 57.143 0.00 0.00 41.05 4.61
4037 4485 0.039618 TGCTGGTTTTCAGGGGGATC 59.960 55.000 0.00 0.00 43.54 3.36
4044 4497 1.069022 CGTGTCCATGCTGGTTTTCAG 60.069 52.381 2.68 0.00 46.03 3.02
4052 4505 3.490759 GTCCGCGTGTCCATGCTG 61.491 66.667 4.92 3.52 41.02 4.41
4054 4507 2.740714 GAAGTCCGCGTGTCCATGC 61.741 63.158 4.92 1.32 39.85 4.06
4055 4508 1.374125 TGAAGTCCGCGTGTCCATG 60.374 57.895 4.92 0.00 0.00 3.66
4056 4509 1.374252 GTGAAGTCCGCGTGTCCAT 60.374 57.895 4.92 0.00 0.00 3.41
4057 4510 2.028484 GTGAAGTCCGCGTGTCCA 59.972 61.111 4.92 0.00 0.00 4.02
4058 4511 2.028484 TGTGAAGTCCGCGTGTCC 59.972 61.111 4.92 0.00 0.00 4.02
4059 4512 2.308039 GGTGTGAAGTCCGCGTGTC 61.308 63.158 4.92 0.00 0.00 3.67
4060 4513 2.279918 GGTGTGAAGTCCGCGTGT 60.280 61.111 4.92 0.00 0.00 4.49
4061 4514 2.279851 TGGTGTGAAGTCCGCGTG 60.280 61.111 4.92 0.00 0.00 5.34
4062 4515 2.029073 CTGGTGTGAAGTCCGCGT 59.971 61.111 4.92 0.00 0.00 6.01
4063 4516 3.414700 GCTGGTGTGAAGTCCGCG 61.415 66.667 0.00 0.00 0.00 6.46
4064 4517 3.050275 GGCTGGTGTGAAGTCCGC 61.050 66.667 0.00 0.00 0.00 5.54
4065 4518 1.669115 CAGGCTGGTGTGAAGTCCG 60.669 63.158 6.61 0.00 0.00 4.79
4066 4519 0.685097 TACAGGCTGGTGTGAAGTCC 59.315 55.000 20.34 0.00 31.46 3.85
4100 4553 1.730902 CCTATCAGCGATGGCGACG 60.731 63.158 0.00 0.00 46.35 5.12
4140 4593 1.597854 CATGTCGGCTGGTGTGTGT 60.598 57.895 0.00 0.00 0.00 3.72
4157 4610 2.025344 GCATCTCATCATTGGTGGCCA 61.025 52.381 0.00 0.00 0.00 5.36
4160 4613 2.927028 TCTGCATCTCATCATTGGTGG 58.073 47.619 0.00 0.00 0.00 4.61
4172 4625 2.196742 TGTATCCCCCTTCTGCATCT 57.803 50.000 0.00 0.00 0.00 2.90
4184 4637 2.032178 GCGACTTCATGCTTTGTATCCC 59.968 50.000 0.00 0.00 0.00 3.85
4194 4647 0.302890 CATCGGAAGCGACTTCATGC 59.697 55.000 17.39 4.10 41.77 4.06
4196 4649 0.811616 GGCATCGGAAGCGACTTCAT 60.812 55.000 17.39 4.91 41.77 2.57
4199 4652 2.509336 CGGCATCGGAAGCGACTT 60.509 61.111 0.00 0.00 0.00 3.01
4206 4659 0.611200 TCCTTTTCTCGGCATCGGAA 59.389 50.000 0.00 0.00 36.95 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.