Multiple sequence alignment - TraesCS4B01G127500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G127500 chr4B 100.000 5000 0 0 1 5000 167343206 167348205 0.000000e+00 9234.0
1 TraesCS4B01G127500 chr4B 85.222 203 17 8 4318 4509 85872699 85872499 3.950000e-46 196.0
2 TraesCS4B01G127500 chr4B 85.222 203 17 10 4318 4509 85897115 85896915 3.950000e-46 196.0
3 TraesCS4B01G127500 chr4B 100.000 49 0 0 4902 4950 167348002 167348050 1.920000e-14 91.6
4 TraesCS4B01G127500 chr4D 97.627 4256 60 9 1 4253 109364188 109359971 0.000000e+00 7262.0
5 TraesCS4B01G127500 chr4D 94.149 376 13 5 4307 4675 109359906 109359533 9.400000e-157 564.0
6 TraesCS4B01G127500 chr4D 94.340 106 3 3 4792 4895 509117803 509117699 5.180000e-35 159.0
7 TraesCS4B01G127500 chr4A 97.177 2763 62 6 1493 4253 467143207 467145955 0.000000e+00 4656.0
8 TraesCS4B01G127500 chr4A 93.746 1503 60 7 1 1494 467141696 467143173 0.000000e+00 2224.0
9 TraesCS4B01G127500 chr4A 92.992 371 13 6 4307 4668 467146020 467146386 3.430000e-146 529.0
10 TraesCS4B01G127500 chr6B 89.583 336 20 7 4467 4795 715738096 715737769 3.600000e-111 412.0
11 TraesCS4B01G127500 chr6B 95.146 103 4 1 4792 4893 276558772 276558670 1.440000e-35 161.0
12 TraesCS4B01G127500 chr6B 96.341 82 3 0 4354 4435 715738180 715738099 8.730000e-28 135.0
13 TraesCS4B01G127500 chr3A 88.670 203 9 7 4560 4755 250042973 250043168 8.370000e-58 235.0
14 TraesCS4B01G127500 chr3A 79.535 215 36 4 4355 4564 584936677 584936466 4.030000e-31 147.0
15 TraesCS4B01G127500 chr3B 84.729 203 18 8 4318 4509 391143627 391143427 1.840000e-44 191.0
16 TraesCS4B01G127500 chr2B 84.314 204 20 5 4318 4509 368943357 368943560 6.610000e-44 189.0
17 TraesCS4B01G127500 chr5D 94.495 109 4 2 4791 4898 228447059 228446952 3.100000e-37 167.0
18 TraesCS4B01G127500 chr5D 100.000 49 0 0 4902 4950 228447053 228447005 1.920000e-14 91.6
19 TraesCS4B01G127500 chr5D 93.220 59 3 1 4888 4945 209313265 209313323 8.920000e-13 86.1
20 TraesCS4B01G127500 chr2A 95.098 102 4 1 4787 4887 68155925 68155824 5.180000e-35 159.0
21 TraesCS4B01G127500 chr2A 95.000 100 4 1 4789 4887 728602564 728602663 6.700000e-34 156.0
22 TraesCS4B01G127500 chr2A 85.000 80 8 4 4871 4949 173354801 173354877 1.490000e-10 78.7
23 TraesCS4B01G127500 chr5B 93.458 107 5 2 4786 4890 316712598 316712704 1.860000e-34 158.0
24 TraesCS4B01G127500 chr5B 94.915 59 2 1 4888 4945 222371177 222371235 1.920000e-14 91.6
25 TraesCS4B01G127500 chr5B 96.296 54 1 1 4899 4951 418373426 418373479 2.480000e-13 87.9
26 TraesCS4B01G127500 chr7D 93.396 106 5 2 4791 4895 168579918 168580022 6.700000e-34 156.0
27 TraesCS4B01G127500 chr7D 93.396 106 6 1 4789 4893 190163116 190163221 6.700000e-34 156.0
28 TraesCS4B01G127500 chr2D 91.964 112 5 4 4782 4891 367506391 367506500 2.410000e-33 154.0
29 TraesCS4B01G127500 chr2D 91.803 61 2 3 4902 4962 124806566 124806623 1.150000e-11 82.4
30 TraesCS4B01G127500 chr6A 89.256 121 5 5 4560 4673 273934852 273934971 1.450000e-30 145.0
31 TraesCS4B01G127500 chr6A 89.256 121 5 5 4560 4673 274008717 274008836 1.450000e-30 145.0
32 TraesCS4B01G127500 chr1D 100.000 49 0 0 4902 4950 323640244 323640292 1.920000e-14 91.6
33 TraesCS4B01G127500 chr6D 100.000 46 0 0 4900 4945 68866240 68866195 8.920000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G127500 chr4B 167343206 167348205 4999 False 4662.800000 9234 100.000000 1 5000 2 chr4B.!!$F1 4999
1 TraesCS4B01G127500 chr4D 109359533 109364188 4655 True 3913.000000 7262 95.888000 1 4675 2 chr4D.!!$R2 4674
2 TraesCS4B01G127500 chr4A 467141696 467146386 4690 False 2469.666667 4656 94.638333 1 4668 3 chr4A.!!$F1 4667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 335 1.369091 ATCGACGGCCACATTTCTGC 61.369 55.000 2.24 0.00 0.00 4.26 F
900 904 1.493871 TGGACCCCTTTGTAAAACCGA 59.506 47.619 0.00 0.00 0.00 4.69 F
901 905 2.108601 TGGACCCCTTTGTAAAACCGAT 59.891 45.455 0.00 0.00 0.00 4.18 F
902 906 2.751259 GGACCCCTTTGTAAAACCGATC 59.249 50.000 0.00 0.00 0.00 3.69 F
1856 1901 2.108157 GGCAGTGACACGGTGACA 59.892 61.111 16.29 12.47 0.00 3.58 F
1976 2021 0.324614 TTTCGCTGCTTCCAGATCCA 59.675 50.000 0.00 0.00 41.77 3.41 F
1977 2022 0.391661 TTCGCTGCTTCCAGATCCAC 60.392 55.000 0.00 0.00 41.77 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1850 1895 1.150536 TTGCCCTTCAGGTGTCACC 59.849 57.895 14.68 14.68 38.99 4.02 R
1851 1896 1.172812 GGTTGCCCTTCAGGTGTCAC 61.173 60.000 0.00 0.00 38.26 3.67 R
1852 1897 1.150536 GGTTGCCCTTCAGGTGTCA 59.849 57.895 0.00 0.00 38.26 3.58 R
1959 2004 1.219124 GTGGATCTGGAAGCAGCGA 59.781 57.895 0.00 0.00 0.00 4.93 R
3693 3745 0.179070 CCTTCTTTAGCGCCTCCTCC 60.179 60.000 2.29 0.00 0.00 4.30 R
3910 3962 2.032204 GCATGAAGCTCTTCCGCAATAG 60.032 50.000 0.00 0.00 41.15 1.73 R
4004 4056 0.698238 TTGCATGTAAGAGCCTGGGT 59.302 50.000 0.00 0.00 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.411394 CGTGAATTTTGTGGCAGCTG 58.589 50.000 10.11 10.11 0.00 4.24
252 256 2.189191 CTAGCTCAAGGTGCAGGCCA 62.189 60.000 5.01 0.00 0.00 5.36
331 335 1.369091 ATCGACGGCCACATTTCTGC 61.369 55.000 2.24 0.00 0.00 4.26
371 375 5.253096 ACCATCATTGTAGTTTAGGAACCCT 59.747 40.000 0.00 0.00 36.39 4.34
424 428 5.698741 TGTCATGGATGGTGAAAGTATCT 57.301 39.130 0.00 0.00 0.00 1.98
440 444 8.730680 TGAAAGTATCTCTTTGAACTTATTGCC 58.269 33.333 0.00 0.00 45.15 4.52
891 895 4.143986 GAGAATCTACTGGACCCCTTTG 57.856 50.000 0.00 0.00 0.00 2.77
892 896 3.519913 GAGAATCTACTGGACCCCTTTGT 59.480 47.826 0.00 0.00 0.00 2.83
893 897 4.695606 AGAATCTACTGGACCCCTTTGTA 58.304 43.478 0.00 0.00 0.00 2.41
894 898 5.098663 AGAATCTACTGGACCCCTTTGTAA 58.901 41.667 0.00 0.00 0.00 2.41
895 899 5.550403 AGAATCTACTGGACCCCTTTGTAAA 59.450 40.000 0.00 0.00 0.00 2.01
896 900 5.853572 ATCTACTGGACCCCTTTGTAAAA 57.146 39.130 0.00 0.00 0.00 1.52
897 901 4.976864 TCTACTGGACCCCTTTGTAAAAC 58.023 43.478 0.00 0.00 0.00 2.43
898 902 2.953453 ACTGGACCCCTTTGTAAAACC 58.047 47.619 0.00 0.00 0.00 3.27
899 903 1.883926 CTGGACCCCTTTGTAAAACCG 59.116 52.381 0.00 0.00 0.00 4.44
900 904 1.493871 TGGACCCCTTTGTAAAACCGA 59.506 47.619 0.00 0.00 0.00 4.69
901 905 2.108601 TGGACCCCTTTGTAAAACCGAT 59.891 45.455 0.00 0.00 0.00 4.18
902 906 2.751259 GGACCCCTTTGTAAAACCGATC 59.249 50.000 0.00 0.00 0.00 3.69
903 907 3.560668 GGACCCCTTTGTAAAACCGATCT 60.561 47.826 0.00 0.00 0.00 2.75
1184 1194 6.601741 TTTTAGCAGAAAATTGTGGCTTTG 57.398 33.333 0.00 0.00 36.10 2.77
1398 1408 5.125578 TGAAGTCATCAGATTGTAGCGTACT 59.874 40.000 0.00 0.00 33.04 2.73
1451 1461 8.604640 ATGTTCATTTGACATTTGCATAAACA 57.395 26.923 0.00 0.00 0.00 2.83
1810 1855 3.219281 GTGGACCAAGTACAACCACAAT 58.781 45.455 16.21 0.00 46.75 2.71
1850 1895 4.969196 ACAGCCGGCAGTGACACG 62.969 66.667 31.54 8.34 0.00 4.49
1854 1899 4.293648 CCGGCAGTGACACGGTGA 62.294 66.667 16.29 0.00 42.53 4.02
1855 1900 3.036084 CGGCAGTGACACGGTGAC 61.036 66.667 16.29 9.58 0.00 3.67
1856 1901 2.108157 GGCAGTGACACGGTGACA 59.892 61.111 16.29 12.47 0.00 3.58
1857 1902 2.244651 GGCAGTGACACGGTGACAC 61.245 63.158 28.05 28.05 41.95 3.67
1959 2004 2.556622 CCCATTTTAGACGGCAGTGTTT 59.443 45.455 0.00 0.00 0.00 2.83
1975 2020 0.729690 GTTTCGCTGCTTCCAGATCC 59.270 55.000 0.00 0.00 41.77 3.36
1976 2021 0.324614 TTTCGCTGCTTCCAGATCCA 59.675 50.000 0.00 0.00 41.77 3.41
1977 2022 0.391661 TTCGCTGCTTCCAGATCCAC 60.392 55.000 0.00 0.00 41.77 4.02
1978 2023 1.220206 CGCTGCTTCCAGATCCACT 59.780 57.895 0.00 0.00 41.77 4.00
1979 2024 0.461548 CGCTGCTTCCAGATCCACTA 59.538 55.000 0.00 0.00 41.77 2.74
1980 2025 1.134699 CGCTGCTTCCAGATCCACTAA 60.135 52.381 0.00 0.00 41.77 2.24
1981 2026 2.559440 GCTGCTTCCAGATCCACTAAG 58.441 52.381 0.00 0.00 41.77 2.18
2018 2069 4.504461 GTGAGCATAATCAACGACTACAGG 59.496 45.833 0.00 0.00 0.00 4.00
2040 2091 1.073397 CCCCTCCCCTGCTTAGGAT 60.073 63.158 0.00 0.00 31.64 3.24
2199 2251 9.255029 ACTTGGATTTAGCTTGTATTTTGGTAT 57.745 29.630 0.00 0.00 0.00 2.73
2411 2463 5.051891 ACAAATAAGCTTGATGCAGTCAC 57.948 39.130 9.86 0.00 45.94 3.67
2748 2800 1.059692 CAAGAGTCACTTACGCATGCG 59.940 52.381 36.79 36.79 40.10 4.73
3693 3745 0.606401 AGGACATGGAACTGGCAACG 60.606 55.000 0.00 0.00 42.51 4.10
3846 3898 2.202987 CTGGCAGACGCTCCATCC 60.203 66.667 9.42 0.00 38.60 3.51
3860 3912 2.239654 CTCCATCCCACAAGGCTTCTTA 59.760 50.000 0.00 0.00 34.51 2.10
3862 3914 2.290896 CCATCCCACAAGGCTTCTTACA 60.291 50.000 0.00 0.00 34.51 2.41
3907 3959 3.250762 CGGTCATCAGAAGAACAGCAAAA 59.749 43.478 0.00 0.00 0.00 2.44
3910 3962 5.447573 GTCATCAGAAGAACAGCAAAACTC 58.552 41.667 0.00 0.00 0.00 3.01
3974 4026 5.997746 TGTTCCACCATAAGAAGAAGAACAG 59.002 40.000 0.00 0.00 37.89 3.16
4004 4056 4.411869 TGGCAGTTCCCACTCATAATATGA 59.588 41.667 2.68 2.68 37.76 2.15
4018 4070 5.843969 TCATAATATGACCCAGGCTCTTACA 59.156 40.000 0.00 0.00 33.59 2.41
4026 4078 2.360165 CCCAGGCTCTTACATGCAAATC 59.640 50.000 0.00 0.00 0.00 2.17
4042 4094 7.498570 ACATGCAAATCCAAACTTTTAACACAT 59.501 29.630 0.00 0.00 0.00 3.21
4113 4165 4.574828 GTGCTGAACTCCTAACTTTTGTCA 59.425 41.667 0.00 0.00 0.00 3.58
4118 4170 7.041372 GCTGAACTCCTAACTTTTGTCATGTAA 60.041 37.037 0.00 0.00 0.00 2.41
4232 4286 5.966853 TTCAATGGTATGGTATGGAGTGA 57.033 39.130 0.00 0.00 0.00 3.41
4233 4287 5.290493 TCAATGGTATGGTATGGAGTGAC 57.710 43.478 0.00 0.00 0.00 3.67
4234 4288 4.719273 TCAATGGTATGGTATGGAGTGACA 59.281 41.667 0.00 0.00 0.00 3.58
4235 4289 5.190726 TCAATGGTATGGTATGGAGTGACAA 59.809 40.000 0.00 0.00 0.00 3.18
4236 4290 4.481368 TGGTATGGTATGGAGTGACAAC 57.519 45.455 0.00 0.00 0.00 3.32
4237 4291 3.841255 TGGTATGGTATGGAGTGACAACA 59.159 43.478 0.00 0.00 0.00 3.33
4238 4292 4.473196 TGGTATGGTATGGAGTGACAACAT 59.527 41.667 0.00 0.00 0.00 2.71
4239 4293 4.816385 GGTATGGTATGGAGTGACAACATG 59.184 45.833 0.00 0.00 0.00 3.21
4240 4294 4.574674 ATGGTATGGAGTGACAACATGT 57.425 40.909 0.00 0.00 0.00 3.21
4241 4295 4.365514 TGGTATGGAGTGACAACATGTT 57.634 40.909 4.92 4.92 0.00 2.71
4242 4296 4.071423 TGGTATGGAGTGACAACATGTTG 58.929 43.478 32.03 32.03 45.58 3.33
4243 4297 3.440173 GGTATGGAGTGACAACATGTTGG 59.560 47.826 35.20 20.77 44.45 3.77
4244 4298 2.727123 TGGAGTGACAACATGTTGGT 57.273 45.000 35.20 23.39 44.45 3.67
4245 4299 3.011566 TGGAGTGACAACATGTTGGTT 57.988 42.857 35.20 20.25 44.45 3.67
4246 4300 4.157849 TGGAGTGACAACATGTTGGTTA 57.842 40.909 35.20 21.22 44.45 2.85
4247 4301 4.724399 TGGAGTGACAACATGTTGGTTAT 58.276 39.130 35.20 21.58 44.45 1.89
4248 4302 5.136828 TGGAGTGACAACATGTTGGTTATT 58.863 37.500 35.20 18.88 44.45 1.40
4249 4303 5.596361 TGGAGTGACAACATGTTGGTTATTT 59.404 36.000 35.20 18.20 44.45 1.40
4250 4304 6.097554 TGGAGTGACAACATGTTGGTTATTTT 59.902 34.615 35.20 17.53 44.45 1.82
4251 4305 6.640907 GGAGTGACAACATGTTGGTTATTTTC 59.359 38.462 35.20 23.80 44.45 2.29
4252 4306 7.346751 AGTGACAACATGTTGGTTATTTTCT 57.653 32.000 35.20 20.18 44.45 2.52
4253 4307 7.781056 AGTGACAACATGTTGGTTATTTTCTT 58.219 30.769 35.20 15.51 44.45 2.52
4254 4308 8.257306 AGTGACAACATGTTGGTTATTTTCTTT 58.743 29.630 35.20 15.03 44.45 2.52
4255 4309 8.878769 GTGACAACATGTTGGTTATTTTCTTTT 58.121 29.630 35.20 14.85 44.45 2.27
4256 4310 9.442047 TGACAACATGTTGGTTATTTTCTTTTT 57.558 25.926 35.20 14.44 44.45 1.94
4257 4311 9.914923 GACAACATGTTGGTTATTTTCTTTTTC 57.085 29.630 35.20 18.34 44.45 2.29
4258 4312 8.599774 ACAACATGTTGGTTATTTTCTTTTTCG 58.400 29.630 35.20 10.25 44.45 3.46
4259 4313 7.172654 ACATGTTGGTTATTTTCTTTTTCGC 57.827 32.000 0.00 0.00 0.00 4.70
4260 4314 5.874892 TGTTGGTTATTTTCTTTTTCGCG 57.125 34.783 0.00 0.00 0.00 5.87
4261 4315 4.740695 TGTTGGTTATTTTCTTTTTCGCGG 59.259 37.500 6.13 0.00 0.00 6.46
4262 4316 3.903360 TGGTTATTTTCTTTTTCGCGGG 58.097 40.909 6.13 0.00 0.00 6.13
4263 4317 3.568853 TGGTTATTTTCTTTTTCGCGGGA 59.431 39.130 6.13 0.00 0.00 5.14
4264 4318 4.163552 GGTTATTTTCTTTTTCGCGGGAG 58.836 43.478 6.13 0.00 0.00 4.30
4286 4340 6.404734 GGAGACAACATGTTGGTTCATATTCC 60.405 42.308 35.20 23.39 44.45 3.01
4287 4341 6.009589 AGACAACATGTTGGTTCATATTCCA 58.990 36.000 35.20 0.00 44.45 3.53
4302 4356 6.499436 TCATATTCCAATAGATCCCTCGGTA 58.501 40.000 0.00 0.00 0.00 4.02
4303 4357 6.607600 TCATATTCCAATAGATCCCTCGGTAG 59.392 42.308 0.00 0.00 0.00 3.18
4331 4430 8.706035 GTGTTCGCTTTCTTCACTTAATTACTA 58.294 33.333 0.00 0.00 0.00 1.82
4405 4504 6.710597 ACTATGATGATTTGCTTGCAGATT 57.289 33.333 0.27 0.00 0.00 2.40
4406 4505 6.736123 ACTATGATGATTTGCTTGCAGATTC 58.264 36.000 0.27 0.00 0.00 2.52
4407 4506 5.854010 ATGATGATTTGCTTGCAGATTCT 57.146 34.783 0.27 0.00 0.00 2.40
4408 4507 5.654603 TGATGATTTGCTTGCAGATTCTT 57.345 34.783 0.27 0.00 0.00 2.52
4490 4595 3.731652 TTGCCAGGTTCAACAAATGAG 57.268 42.857 0.00 0.00 39.77 2.90
4502 4607 5.690865 TCAACAAATGAGGACCTTTACTGT 58.309 37.500 0.00 0.00 33.04 3.55
4584 4689 9.193806 AGATGATATTTGGATTAAACAGCAAGT 57.806 29.630 0.00 0.00 0.00 3.16
4634 4746 8.534333 TTAGCTTGTGTACTGATTCTTTAGTG 57.466 34.615 0.00 0.00 0.00 2.74
4650 4762 5.663106 TCTTTAGTGCCTGGTTAGATCTCAT 59.337 40.000 0.00 0.00 0.00 2.90
4668 4780 3.405831 TCATGTGTTGCTGAAGGAGAAG 58.594 45.455 0.00 0.00 0.00 2.85
4669 4781 3.071457 TCATGTGTTGCTGAAGGAGAAGA 59.929 43.478 0.00 0.00 0.00 2.87
4670 4782 3.777106 TGTGTTGCTGAAGGAGAAGAT 57.223 42.857 0.00 0.00 0.00 2.40
4672 4784 3.817084 TGTGTTGCTGAAGGAGAAGATTG 59.183 43.478 0.00 0.00 0.00 2.67
4673 4785 3.817647 GTGTTGCTGAAGGAGAAGATTGT 59.182 43.478 0.00 0.00 0.00 2.71
4674 4786 4.276926 GTGTTGCTGAAGGAGAAGATTGTT 59.723 41.667 0.00 0.00 0.00 2.83
4675 4787 4.276678 TGTTGCTGAAGGAGAAGATTGTTG 59.723 41.667 0.00 0.00 0.00 3.33
4676 4788 3.415212 TGCTGAAGGAGAAGATTGTTGG 58.585 45.455 0.00 0.00 0.00 3.77
4677 4789 3.181440 TGCTGAAGGAGAAGATTGTTGGT 60.181 43.478 0.00 0.00 0.00 3.67
4678 4790 3.438434 GCTGAAGGAGAAGATTGTTGGTC 59.562 47.826 0.00 0.00 0.00 4.02
4679 4791 4.006319 CTGAAGGAGAAGATTGTTGGTCC 58.994 47.826 0.00 0.00 0.00 4.46
4680 4792 3.394274 TGAAGGAGAAGATTGTTGGTCCA 59.606 43.478 0.00 0.00 0.00 4.02
4681 4793 3.710209 AGGAGAAGATTGTTGGTCCAG 57.290 47.619 0.00 0.00 0.00 3.86
4682 4794 3.251484 AGGAGAAGATTGTTGGTCCAGA 58.749 45.455 0.00 0.00 0.00 3.86
4683 4795 3.008485 AGGAGAAGATTGTTGGTCCAGAC 59.992 47.826 0.00 0.00 0.00 3.51
4684 4796 3.008485 GGAGAAGATTGTTGGTCCAGACT 59.992 47.826 0.00 0.00 0.00 3.24
4685 4797 4.249661 GAGAAGATTGTTGGTCCAGACTC 58.750 47.826 0.00 0.00 0.00 3.36
4686 4798 3.008485 AGAAGATTGTTGGTCCAGACTCC 59.992 47.826 0.00 0.00 0.00 3.85
4687 4799 2.338809 AGATTGTTGGTCCAGACTCCA 58.661 47.619 0.00 0.00 0.00 3.86
4688 4800 2.304180 AGATTGTTGGTCCAGACTCCAG 59.696 50.000 0.00 0.00 35.05 3.86
4689 4801 1.801242 TTGTTGGTCCAGACTCCAGA 58.199 50.000 0.00 0.00 35.05 3.86
4690 4802 1.801242 TGTTGGTCCAGACTCCAGAA 58.199 50.000 0.00 0.00 35.05 3.02
4691 4803 1.694150 TGTTGGTCCAGACTCCAGAAG 59.306 52.381 0.00 0.00 35.05 2.85
4692 4804 1.002544 GTTGGTCCAGACTCCAGAAGG 59.997 57.143 0.00 0.00 35.05 3.46
4693 4805 1.194781 TGGTCCAGACTCCAGAAGGC 61.195 60.000 0.00 0.00 33.74 4.35
4694 4806 1.599576 GTCCAGACTCCAGAAGGCC 59.400 63.158 0.00 0.00 30.70 5.19
4695 4807 1.158466 TCCAGACTCCAGAAGGCCA 59.842 57.895 5.01 0.00 30.70 5.36
4696 4808 0.252881 TCCAGACTCCAGAAGGCCAT 60.253 55.000 5.01 0.00 30.70 4.40
4697 4809 0.622665 CCAGACTCCAGAAGGCCATT 59.377 55.000 5.01 0.00 30.70 3.16
4698 4810 1.005215 CCAGACTCCAGAAGGCCATTT 59.995 52.381 5.01 0.00 30.70 2.32
4699 4811 2.363683 CAGACTCCAGAAGGCCATTTC 58.636 52.381 5.01 0.00 30.70 2.17
4700 4812 1.988107 AGACTCCAGAAGGCCATTTCA 59.012 47.619 5.01 0.00 30.70 2.69
4701 4813 2.579860 AGACTCCAGAAGGCCATTTCAT 59.420 45.455 5.01 0.00 30.70 2.57
4702 4814 3.011032 AGACTCCAGAAGGCCATTTCATT 59.989 43.478 5.01 0.00 30.70 2.57
4703 4815 4.228210 AGACTCCAGAAGGCCATTTCATTA 59.772 41.667 5.01 0.00 30.70 1.90
4704 4816 5.103771 AGACTCCAGAAGGCCATTTCATTAT 60.104 40.000 5.01 0.00 30.70 1.28
4705 4817 5.522641 ACTCCAGAAGGCCATTTCATTATT 58.477 37.500 5.01 0.00 33.74 1.40
4706 4818 5.960202 ACTCCAGAAGGCCATTTCATTATTT 59.040 36.000 5.01 0.00 33.74 1.40
4707 4819 7.125391 ACTCCAGAAGGCCATTTCATTATTTA 58.875 34.615 5.01 0.00 33.74 1.40
4708 4820 7.068716 ACTCCAGAAGGCCATTTCATTATTTAC 59.931 37.037 5.01 0.00 33.74 2.01
4709 4821 6.039270 TCCAGAAGGCCATTTCATTATTTACG 59.961 38.462 5.01 0.00 33.74 3.18
4710 4822 6.039270 CCAGAAGGCCATTTCATTATTTACGA 59.961 38.462 5.01 0.00 0.00 3.43
4711 4823 7.416213 CCAGAAGGCCATTTCATTATTTACGAA 60.416 37.037 5.01 0.00 0.00 3.85
4712 4824 7.432252 CAGAAGGCCATTTCATTATTTACGAAC 59.568 37.037 5.01 0.00 0.00 3.95
4713 4825 7.339466 AGAAGGCCATTTCATTATTTACGAACT 59.661 33.333 5.01 0.00 0.00 3.01
4714 4826 7.404671 AGGCCATTTCATTATTTACGAACTT 57.595 32.000 5.01 0.00 0.00 2.66
4715 4827 7.257722 AGGCCATTTCATTATTTACGAACTTG 58.742 34.615 5.01 0.00 0.00 3.16
4716 4828 6.019881 GGCCATTTCATTATTTACGAACTTGC 60.020 38.462 0.00 0.00 0.00 4.01
4717 4829 6.529829 GCCATTTCATTATTTACGAACTTGCA 59.470 34.615 0.00 0.00 0.00 4.08
4718 4830 7.253750 GCCATTTCATTATTTACGAACTTGCAG 60.254 37.037 0.00 0.00 0.00 4.41
4719 4831 7.967854 CCATTTCATTATTTACGAACTTGCAGA 59.032 33.333 0.00 0.00 0.00 4.26
4720 4832 8.788813 CATTTCATTATTTACGAACTTGCAGAC 58.211 33.333 0.00 0.00 0.00 3.51
4721 4833 7.428282 TTCATTATTTACGAACTTGCAGACA 57.572 32.000 0.00 0.00 0.00 3.41
4722 4834 7.428282 TCATTATTTACGAACTTGCAGACAA 57.572 32.000 0.00 0.00 0.00 3.18
4723 4835 8.039603 TCATTATTTACGAACTTGCAGACAAT 57.960 30.769 0.00 0.00 34.61 2.71
4724 4836 7.962373 TCATTATTTACGAACTTGCAGACAATG 59.038 33.333 0.00 0.00 34.61 2.82
4752 4864 6.705863 GGATAAATCCATGAGTTTGAAGCT 57.294 37.500 4.04 0.00 46.38 3.74
4753 4865 6.733145 GGATAAATCCATGAGTTTGAAGCTC 58.267 40.000 1.81 1.81 46.38 4.09
4754 4866 6.319658 GGATAAATCCATGAGTTTGAAGCTCA 59.680 38.462 14.00 14.00 46.38 4.26
4755 4867 7.148018 GGATAAATCCATGAGTTTGAAGCTCAA 60.148 37.037 15.50 0.21 46.38 3.02
4756 4868 6.409524 AAATCCATGAGTTTGAAGCTCAAA 57.590 33.333 15.50 5.40 44.82 2.69
4757 4869 5.640189 ATCCATGAGTTTGAAGCTCAAAG 57.360 39.130 15.50 10.94 45.83 2.77
4758 4870 4.717877 TCCATGAGTTTGAAGCTCAAAGA 58.282 39.130 15.50 11.95 45.83 2.52
4759 4871 5.132502 TCCATGAGTTTGAAGCTCAAAGAA 58.867 37.500 15.50 0.11 45.83 2.52
4760 4872 5.593909 TCCATGAGTTTGAAGCTCAAAGAAA 59.406 36.000 15.50 2.04 45.83 2.52
4761 4873 6.096705 TCCATGAGTTTGAAGCTCAAAGAAAA 59.903 34.615 15.50 0.00 45.83 2.29
4762 4874 6.757947 CCATGAGTTTGAAGCTCAAAGAAAAA 59.242 34.615 15.50 0.00 45.83 1.94
4784 4896 6.763303 AAAATTCGAAGGTATGCAAACAAC 57.237 33.333 3.35 0.00 0.00 3.32
4785 4897 5.446143 AATTCGAAGGTATGCAAACAACA 57.554 34.783 3.35 0.00 0.00 3.33
4786 4898 4.902443 TTCGAAGGTATGCAAACAACAA 57.098 36.364 0.00 0.00 0.00 2.83
4787 4899 5.446143 TTCGAAGGTATGCAAACAACAAT 57.554 34.783 0.00 0.00 0.00 2.71
4788 4900 6.561737 TTCGAAGGTATGCAAACAACAATA 57.438 33.333 0.00 0.00 0.00 1.90
4789 4901 6.751514 TCGAAGGTATGCAAACAACAATAT 57.248 33.333 0.00 0.00 0.00 1.28
4790 4902 6.550843 TCGAAGGTATGCAAACAACAATATG 58.449 36.000 0.00 0.00 0.00 1.78
4791 4903 6.150307 TCGAAGGTATGCAAACAACAATATGT 59.850 34.615 0.00 0.00 34.24 2.29
4792 4904 7.334671 TCGAAGGTATGCAAACAACAATATGTA 59.665 33.333 0.00 0.00 32.02 2.29
4793 4905 7.428183 CGAAGGTATGCAAACAACAATATGTAC 59.572 37.037 0.00 0.00 32.02 2.90
4794 4906 7.938140 AGGTATGCAAACAACAATATGTACT 57.062 32.000 0.00 0.00 32.02 2.73
4795 4907 7.985476 AGGTATGCAAACAACAATATGTACTC 58.015 34.615 0.00 0.00 32.02 2.59
4796 4908 7.067008 AGGTATGCAAACAACAATATGTACTCC 59.933 37.037 0.00 0.00 32.02 3.85
4797 4909 5.637006 TGCAAACAACAATATGTACTCCC 57.363 39.130 0.00 0.00 32.02 4.30
4798 4910 5.321102 TGCAAACAACAATATGTACTCCCT 58.679 37.500 0.00 0.00 32.02 4.20
4799 4911 5.414454 TGCAAACAACAATATGTACTCCCTC 59.586 40.000 0.00 0.00 32.02 4.30
4800 4912 5.163652 GCAAACAACAATATGTACTCCCTCC 60.164 44.000 0.00 0.00 32.02 4.30
4801 4913 4.402056 ACAACAATATGTACTCCCTCCG 57.598 45.455 0.00 0.00 0.00 4.63
4802 4914 3.773119 ACAACAATATGTACTCCCTCCGT 59.227 43.478 0.00 0.00 0.00 4.69
4803 4915 4.142004 ACAACAATATGTACTCCCTCCGTC 60.142 45.833 0.00 0.00 0.00 4.79
4804 4916 2.963782 ACAATATGTACTCCCTCCGTCC 59.036 50.000 0.00 0.00 0.00 4.79
4805 4917 2.299297 CAATATGTACTCCCTCCGTCCC 59.701 54.545 0.00 0.00 0.00 4.46
4806 4918 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
4807 4919 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
4808 4920 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
4809 4921 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
4810 4922 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
4811 4923 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4812 4924 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4813 4925 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4814 4926 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4815 4927 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4816 4928 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4817 4929 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4818 4930 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4819 4931 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4820 4932 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
4821 4933 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4822 4934 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
4823 4935 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
4824 4936 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
4825 4937 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
4826 4938 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
4827 4939 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
4828 4940 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
4829 4941 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
4830 4942 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
4836 4948 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
4837 4949 9.880157 AAGTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
4838 4950 9.530633 AGTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
4839 4951 9.310716 GTGTCTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
4840 4952 9.309516 TGTCTCAACTTTGTACTAACTTTAGTG 57.690 33.333 11.24 0.00 43.44 2.74
4841 4953 9.310716 GTCTCAACTTTGTACTAACTTTAGTGT 57.689 33.333 11.24 0.00 43.44 3.55
4876 4988 9.856162 ACTAAGTTTAAGACACTTATTTTGGGA 57.144 29.630 0.00 0.00 36.39 4.37
4878 4990 7.198306 AGTTTAAGACACTTATTTTGGGACG 57.802 36.000 0.00 0.00 0.00 4.79
4879 4991 6.206048 AGTTTAAGACACTTATTTTGGGACGG 59.794 38.462 0.00 0.00 0.00 4.79
4880 4992 3.067684 AGACACTTATTTTGGGACGGG 57.932 47.619 0.00 0.00 0.00 5.28
4881 4993 2.089201 GACACTTATTTTGGGACGGGG 58.911 52.381 0.00 0.00 0.00 5.73
4882 4994 1.272258 ACACTTATTTTGGGACGGGGG 60.272 52.381 0.00 0.00 0.00 5.40
4883 4995 1.004979 CACTTATTTTGGGACGGGGGA 59.995 52.381 0.00 0.00 0.00 4.81
4884 4996 1.283905 ACTTATTTTGGGACGGGGGAG 59.716 52.381 0.00 0.00 0.00 4.30
4885 4997 1.283905 CTTATTTTGGGACGGGGGAGT 59.716 52.381 0.00 0.00 0.00 3.85
4886 4998 2.267160 TATTTTGGGACGGGGGAGTA 57.733 50.000 0.00 0.00 0.00 2.59
4887 4999 0.622136 ATTTTGGGACGGGGGAGTAC 59.378 55.000 0.00 0.00 0.00 2.73
4888 5000 0.474273 TTTTGGGACGGGGGAGTACT 60.474 55.000 0.00 0.00 0.00 2.73
4889 5001 0.413037 TTTGGGACGGGGGAGTACTA 59.587 55.000 0.00 0.00 0.00 1.82
4890 5002 0.638292 TTGGGACGGGGGAGTACTAT 59.362 55.000 0.00 0.00 0.00 2.12
4891 5003 1.533187 TGGGACGGGGGAGTACTATA 58.467 55.000 0.00 0.00 0.00 1.31
4892 5004 2.076189 TGGGACGGGGGAGTACTATAT 58.924 52.381 0.00 0.00 0.00 0.86
4893 5005 2.452047 TGGGACGGGGGAGTACTATATT 59.548 50.000 0.00 0.00 0.00 1.28
4894 5006 3.116629 TGGGACGGGGGAGTACTATATTT 60.117 47.826 0.00 0.00 0.00 1.40
4895 5007 3.513119 GGGACGGGGGAGTACTATATTTC 59.487 52.174 0.00 0.00 0.00 2.17
4896 5008 4.154942 GGACGGGGGAGTACTATATTTCA 58.845 47.826 0.00 0.00 0.00 2.69
4897 5009 4.220163 GGACGGGGGAGTACTATATTTCAG 59.780 50.000 0.00 0.00 0.00 3.02
4898 5010 5.070823 ACGGGGGAGTACTATATTTCAGA 57.929 43.478 0.00 0.00 0.00 3.27
4899 5011 5.652324 ACGGGGGAGTACTATATTTCAGAT 58.348 41.667 0.00 0.00 0.00 2.90
4900 5012 6.082707 ACGGGGGAGTACTATATTTCAGATT 58.917 40.000 0.00 0.00 0.00 2.40
4901 5013 6.210984 ACGGGGGAGTACTATATTTCAGATTC 59.789 42.308 0.00 0.00 0.00 2.52
4902 5014 6.351117 CGGGGGAGTACTATATTTCAGATTCC 60.351 46.154 0.00 0.00 0.00 3.01
4903 5015 6.731448 GGGGGAGTACTATATTTCAGATTCCT 59.269 42.308 0.00 0.00 0.00 3.36
4904 5016 7.093245 GGGGGAGTACTATATTTCAGATTCCTC 60.093 44.444 0.00 0.00 0.00 3.71
4905 5017 7.093245 GGGGAGTACTATATTTCAGATTCCTCC 60.093 44.444 0.00 0.00 34.28 4.30
4906 5018 7.363094 GGGAGTACTATATTTCAGATTCCTCCG 60.363 44.444 0.00 0.00 35.54 4.63
4907 5019 7.177041 GGAGTACTATATTTCAGATTCCTCCGT 59.823 40.741 0.00 0.00 0.00 4.69
4908 5020 8.113173 AGTACTATATTTCAGATTCCTCCGTC 57.887 38.462 0.00 0.00 0.00 4.79
4909 5021 6.347859 ACTATATTTCAGATTCCTCCGTCC 57.652 41.667 0.00 0.00 0.00 4.79
4910 5022 4.625607 ATATTTCAGATTCCTCCGTCCC 57.374 45.455 0.00 0.00 0.00 4.46
4911 5023 1.651737 TTTCAGATTCCTCCGTCCCA 58.348 50.000 0.00 0.00 0.00 4.37
4912 5024 1.651737 TTCAGATTCCTCCGTCCCAA 58.348 50.000 0.00 0.00 0.00 4.12
4913 5025 1.651737 TCAGATTCCTCCGTCCCAAA 58.348 50.000 0.00 0.00 0.00 3.28
4914 5026 1.982226 TCAGATTCCTCCGTCCCAAAA 59.018 47.619 0.00 0.00 0.00 2.44
4915 5027 2.576191 TCAGATTCCTCCGTCCCAAAAT 59.424 45.455 0.00 0.00 0.00 1.82
4916 5028 3.778075 TCAGATTCCTCCGTCCCAAAATA 59.222 43.478 0.00 0.00 0.00 1.40
4917 5029 4.226394 TCAGATTCCTCCGTCCCAAAATAA 59.774 41.667 0.00 0.00 0.00 1.40
4918 5030 4.576463 CAGATTCCTCCGTCCCAAAATAAG 59.424 45.833 0.00 0.00 0.00 1.73
4919 5031 4.227527 AGATTCCTCCGTCCCAAAATAAGT 59.772 41.667 0.00 0.00 0.00 2.24
4920 5032 3.343941 TCCTCCGTCCCAAAATAAGTG 57.656 47.619 0.00 0.00 0.00 3.16
4921 5033 2.640826 TCCTCCGTCCCAAAATAAGTGT 59.359 45.455 0.00 0.00 0.00 3.55
4922 5034 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4923 5035 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4924 5036 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4925 5037 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
4926 5038 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4927 5039 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
4928 5040 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
4929 5041 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
4930 5042 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
4931 5043 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
4932 5044 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
4933 5045 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
4934 5046 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
4935 5047 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
4941 5053 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
4942 5054 9.880157 AAGTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
4943 5055 9.530633 AGTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
4944 5056 9.310716 GTGTCTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
4945 5057 9.309516 TGTCTCAACTTTGTACTAACTTTAGTG 57.690 33.333 11.24 0.00 43.44 2.74
4946 5058 9.310716 GTCTCAACTTTGTACTAACTTTAGTGT 57.689 33.333 11.24 0.00 43.44 3.55
4967 5079 8.418597 AGTGTAAAAGAAGAGTACTACCATCA 57.581 34.615 0.00 0.00 0.00 3.07
4968 5080 9.036980 AGTGTAAAAGAAGAGTACTACCATCAT 57.963 33.333 0.00 0.00 0.00 2.45
4969 5081 9.303537 GTGTAAAAGAAGAGTACTACCATCATC 57.696 37.037 0.00 0.00 0.00 2.92
4970 5082 9.031537 TGTAAAAGAAGAGTACTACCATCATCA 57.968 33.333 0.00 0.00 0.00 3.07
4973 5085 9.606631 AAAAGAAGAGTACTACCATCATCATTC 57.393 33.333 0.00 0.00 0.00 2.67
4974 5086 7.296628 AGAAGAGTACTACCATCATCATTCC 57.703 40.000 0.00 0.00 0.00 3.01
4975 5087 6.841229 AGAAGAGTACTACCATCATCATTCCA 59.159 38.462 0.00 0.00 0.00 3.53
4976 5088 6.412362 AGAGTACTACCATCATCATTCCAC 57.588 41.667 0.00 0.00 0.00 4.02
4977 5089 5.305644 AGAGTACTACCATCATCATTCCACC 59.694 44.000 0.00 0.00 0.00 4.61
4978 5090 3.475566 ACTACCATCATCATTCCACCG 57.524 47.619 0.00 0.00 0.00 4.94
4979 5091 2.104792 ACTACCATCATCATTCCACCGG 59.895 50.000 0.00 0.00 0.00 5.28
4980 5092 0.918983 ACCATCATCATTCCACCGGT 59.081 50.000 0.00 0.00 0.00 5.28
4981 5093 1.311859 CCATCATCATTCCACCGGTG 58.688 55.000 28.26 28.26 0.00 4.94
4982 5094 0.664761 CATCATCATTCCACCGGTGC 59.335 55.000 29.75 0.00 0.00 5.01
4983 5095 0.548031 ATCATCATTCCACCGGTGCT 59.452 50.000 29.75 12.78 0.00 4.40
4984 5096 0.107703 TCATCATTCCACCGGTGCTC 60.108 55.000 29.75 0.00 0.00 4.26
4985 5097 0.107508 CATCATTCCACCGGTGCTCT 60.108 55.000 29.75 12.01 0.00 4.09
4986 5098 0.107508 ATCATTCCACCGGTGCTCTG 60.108 55.000 29.75 22.50 0.00 3.35
4987 5099 1.191489 TCATTCCACCGGTGCTCTGA 61.191 55.000 29.75 24.24 0.00 3.27
4988 5100 1.021390 CATTCCACCGGTGCTCTGAC 61.021 60.000 29.75 0.00 0.00 3.51
4989 5101 2.185310 ATTCCACCGGTGCTCTGACC 62.185 60.000 29.75 0.00 0.00 4.02
4990 5102 3.625897 CCACCGGTGCTCTGACCA 61.626 66.667 29.75 0.00 35.50 4.02
4991 5103 2.357517 CACCGGTGCTCTGACCAC 60.358 66.667 24.02 0.00 35.50 4.16
4992 5104 2.524394 ACCGGTGCTCTGACCACT 60.524 61.111 6.12 0.00 35.50 4.00
4993 5105 2.140792 ACCGGTGCTCTGACCACTT 61.141 57.895 6.12 0.00 35.50 3.16
4994 5106 1.374758 CCGGTGCTCTGACCACTTC 60.375 63.158 0.00 0.00 35.50 3.01
4995 5107 1.374758 CGGTGCTCTGACCACTTCC 60.375 63.158 3.35 0.00 35.50 3.46
4996 5108 1.754745 GGTGCTCTGACCACTTCCA 59.245 57.895 3.35 0.00 35.88 3.53
4997 5109 0.108585 GGTGCTCTGACCACTTCCAA 59.891 55.000 3.35 0.00 35.88 3.53
4998 5110 1.517242 GTGCTCTGACCACTTCCAAG 58.483 55.000 0.00 0.00 0.00 3.61
4999 5111 1.070758 GTGCTCTGACCACTTCCAAGA 59.929 52.381 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.332375 ACACAACAAACCAATCGTCGG 59.668 47.619 0.00 0.00 0.00 4.79
252 256 4.099881 AGAATCGGGCAAAAATGCATATGT 59.900 37.500 0.00 0.00 36.33 2.29
397 401 6.764308 ACTTTCACCATCCATGACAAATAG 57.236 37.500 0.00 0.00 0.00 1.73
399 403 7.121382 AGATACTTTCACCATCCATGACAAAT 58.879 34.615 0.00 0.00 0.00 2.32
414 418 8.730680 GGCAATAAGTTCAAAGAGATACTTTCA 58.269 33.333 0.00 0.00 45.66 2.69
424 428 3.305064 GGTTGCGGCAATAAGTTCAAAGA 60.305 43.478 19.53 0.00 0.00 2.52
440 444 3.119637 CCACCAAATAGTAAAGGGTTGCG 60.120 47.826 0.00 0.00 0.00 4.85
556 560 3.654273 TCTCTTATTCCCCCTACCACAG 58.346 50.000 0.00 0.00 0.00 3.66
803 807 6.743575 ACAGTGCTGATGATTAGTTTTACC 57.256 37.500 6.17 0.00 0.00 2.85
854 858 6.310764 AGATTCTCTGATGACCAACAAGAT 57.689 37.500 0.00 0.00 0.00 2.40
885 889 3.014623 GGGAGATCGGTTTTACAAAGGG 58.985 50.000 0.00 0.00 0.00 3.95
886 890 3.951663 AGGGAGATCGGTTTTACAAAGG 58.048 45.455 0.00 0.00 0.00 3.11
887 891 5.240844 ACAAAGGGAGATCGGTTTTACAAAG 59.759 40.000 0.00 0.00 0.00 2.77
888 892 5.134661 ACAAAGGGAGATCGGTTTTACAAA 58.865 37.500 0.00 0.00 0.00 2.83
889 893 4.721132 ACAAAGGGAGATCGGTTTTACAA 58.279 39.130 0.00 0.00 0.00 2.41
890 894 4.360951 ACAAAGGGAGATCGGTTTTACA 57.639 40.909 0.00 0.00 0.00 2.41
891 895 6.806388 TTTACAAAGGGAGATCGGTTTTAC 57.194 37.500 0.00 0.00 0.00 2.01
892 896 6.207221 GGTTTTACAAAGGGAGATCGGTTTTA 59.793 38.462 0.00 0.00 0.00 1.52
893 897 5.010314 GGTTTTACAAAGGGAGATCGGTTTT 59.990 40.000 0.00 0.00 0.00 2.43
894 898 4.521639 GGTTTTACAAAGGGAGATCGGTTT 59.478 41.667 0.00 0.00 0.00 3.27
895 899 4.077108 GGTTTTACAAAGGGAGATCGGTT 58.923 43.478 0.00 0.00 0.00 4.44
896 900 3.682696 GGTTTTACAAAGGGAGATCGGT 58.317 45.455 0.00 0.00 0.00 4.69
897 901 2.676342 CGGTTTTACAAAGGGAGATCGG 59.324 50.000 0.00 0.00 0.00 4.18
898 902 3.592059 TCGGTTTTACAAAGGGAGATCG 58.408 45.455 0.00 0.00 0.00 3.69
899 903 4.575236 GGATCGGTTTTACAAAGGGAGATC 59.425 45.833 0.00 0.00 33.34 2.75
900 904 4.018779 TGGATCGGTTTTACAAAGGGAGAT 60.019 41.667 0.00 0.00 0.00 2.75
901 905 3.328343 TGGATCGGTTTTACAAAGGGAGA 59.672 43.478 0.00 0.00 0.00 3.71
902 906 3.681593 TGGATCGGTTTTACAAAGGGAG 58.318 45.455 0.00 0.00 0.00 4.30
903 907 3.791953 TGGATCGGTTTTACAAAGGGA 57.208 42.857 0.00 0.00 0.00 4.20
1014 1018 4.040829 TCTCCAGTCTTTTCTGAATCAGCA 59.959 41.667 5.18 0.00 37.61 4.41
1398 1408 6.717997 GGAAGGGGACAAAAGAAAAGTATACA 59.282 38.462 5.50 0.00 0.00 2.29
1690 1735 5.646360 TGTGCTTTACTAAGATAAAGGGTGC 59.354 40.000 7.24 0.00 40.88 5.01
1810 1855 4.735132 GCGCTAGGGACGTGTGCA 62.735 66.667 11.61 0.00 40.33 4.57
1850 1895 1.150536 TTGCCCTTCAGGTGTCACC 59.849 57.895 14.68 14.68 38.99 4.02
1851 1896 1.172812 GGTTGCCCTTCAGGTGTCAC 61.173 60.000 0.00 0.00 38.26 3.67
1852 1897 1.150536 GGTTGCCCTTCAGGTGTCA 59.849 57.895 0.00 0.00 38.26 3.58
1853 1898 1.966451 CGGTTGCCCTTCAGGTGTC 60.966 63.158 0.00 0.00 38.26 3.67
1854 1899 2.113139 CGGTTGCCCTTCAGGTGT 59.887 61.111 0.00 0.00 38.26 4.16
1855 1900 3.365265 GCGGTTGCCCTTCAGGTG 61.365 66.667 0.00 0.00 38.26 4.00
1856 1901 3.553095 GAGCGGTTGCCCTTCAGGT 62.553 63.158 0.00 0.00 44.31 4.00
1857 1902 2.747855 GAGCGGTTGCCCTTCAGG 60.748 66.667 0.00 0.00 44.31 3.86
1959 2004 1.219124 GTGGATCTGGAAGCAGCGA 59.781 57.895 0.00 0.00 0.00 4.93
2040 2091 1.285280 CATGGACTCCACCCTAACCA 58.715 55.000 0.00 0.00 35.80 3.67
2411 2463 6.403636 CCGGATATTCAGTTCTTTTGACTTGG 60.404 42.308 0.00 0.00 0.00 3.61
2748 2800 1.584380 CTTGCTCTGTGGCTGCCTTC 61.584 60.000 21.03 13.25 0.00 3.46
3453 3505 4.022849 GCACTTGCCTTTTCTGATAGTTGT 60.023 41.667 0.00 0.00 34.31 3.32
3672 3724 1.067295 TTGCCAGTTCCATGTCCTCT 58.933 50.000 0.00 0.00 0.00 3.69
3693 3745 0.179070 CCTTCTTTAGCGCCTCCTCC 60.179 60.000 2.29 0.00 0.00 4.30
3846 3898 4.610945 CTTTTGTGTAAGAAGCCTTGTGG 58.389 43.478 0.00 0.00 33.94 4.17
3860 3912 3.005155 GCTCTTCTCATTGGCTTTTGTGT 59.995 43.478 0.00 0.00 0.00 3.72
3862 3914 3.225104 TGCTCTTCTCATTGGCTTTTGT 58.775 40.909 0.00 0.00 0.00 2.83
3907 3959 2.497675 TGAAGCTCTTCCGCAATAGAGT 59.502 45.455 7.12 0.00 40.01 3.24
3910 3962 2.032204 GCATGAAGCTCTTCCGCAATAG 60.032 50.000 0.00 0.00 41.15 1.73
4004 4056 0.698238 TTGCATGTAAGAGCCTGGGT 59.302 50.000 0.00 0.00 0.00 4.51
4018 4070 8.344098 CAATGTGTTAAAAGTTTGGATTTGCAT 58.656 29.630 0.00 0.00 0.00 3.96
4026 4078 9.488124 CAAATGAACAATGTGTTAAAAGTTTGG 57.512 29.630 0.00 0.00 41.28 3.28
4113 4165 9.407380 ACATATACAACATGAACATGGTTACAT 57.593 29.630 17.25 7.47 42.91 2.29
4118 4170 8.978874 ACATACATATACAACATGAACATGGT 57.021 30.769 17.25 9.40 42.91 3.55
4232 4286 8.599774 CGAAAAAGAAAATAACCAACATGTTGT 58.400 29.630 31.20 19.44 38.85 3.32
4233 4287 7.582319 GCGAAAAAGAAAATAACCAACATGTTG 59.418 33.333 28.18 28.18 40.13 3.33
4234 4288 7.515998 CGCGAAAAAGAAAATAACCAACATGTT 60.516 33.333 4.92 4.92 0.00 2.71
4235 4289 6.074569 CGCGAAAAAGAAAATAACCAACATGT 60.075 34.615 0.00 0.00 0.00 3.21
4236 4290 6.288419 CGCGAAAAAGAAAATAACCAACATG 58.712 36.000 0.00 0.00 0.00 3.21
4237 4291 5.404066 CCGCGAAAAAGAAAATAACCAACAT 59.596 36.000 8.23 0.00 0.00 2.71
4238 4292 4.740695 CCGCGAAAAAGAAAATAACCAACA 59.259 37.500 8.23 0.00 0.00 3.33
4239 4293 4.149221 CCCGCGAAAAAGAAAATAACCAAC 59.851 41.667 8.23 0.00 0.00 3.77
4240 4294 4.037684 TCCCGCGAAAAAGAAAATAACCAA 59.962 37.500 8.23 0.00 0.00 3.67
4241 4295 3.568853 TCCCGCGAAAAAGAAAATAACCA 59.431 39.130 8.23 0.00 0.00 3.67
4242 4296 4.083164 TCTCCCGCGAAAAAGAAAATAACC 60.083 41.667 8.23 0.00 0.00 2.85
4243 4297 4.849926 GTCTCCCGCGAAAAAGAAAATAAC 59.150 41.667 8.23 0.00 0.00 1.89
4244 4298 4.515944 TGTCTCCCGCGAAAAAGAAAATAA 59.484 37.500 8.23 0.00 0.00 1.40
4245 4299 4.066490 TGTCTCCCGCGAAAAAGAAAATA 58.934 39.130 8.23 0.00 0.00 1.40
4246 4300 2.882137 TGTCTCCCGCGAAAAAGAAAAT 59.118 40.909 8.23 0.00 0.00 1.82
4247 4301 2.290464 TGTCTCCCGCGAAAAAGAAAA 58.710 42.857 8.23 0.00 0.00 2.29
4248 4302 1.956297 TGTCTCCCGCGAAAAAGAAA 58.044 45.000 8.23 0.00 0.00 2.52
4249 4303 1.600485 GTTGTCTCCCGCGAAAAAGAA 59.400 47.619 8.23 0.00 0.00 2.52
4250 4304 1.223187 GTTGTCTCCCGCGAAAAAGA 58.777 50.000 8.23 1.14 0.00 2.52
4251 4305 0.941542 TGTTGTCTCCCGCGAAAAAG 59.058 50.000 8.23 0.00 0.00 2.27
4252 4306 1.265635 CATGTTGTCTCCCGCGAAAAA 59.734 47.619 8.23 0.00 0.00 1.94
4253 4307 0.871722 CATGTTGTCTCCCGCGAAAA 59.128 50.000 8.23 0.00 0.00 2.29
4254 4308 0.250124 ACATGTTGTCTCCCGCGAAA 60.250 50.000 8.23 0.00 0.00 3.46
4255 4309 0.250124 AACATGTTGTCTCCCGCGAA 60.250 50.000 11.07 0.00 0.00 4.70
4256 4310 0.948623 CAACATGTTGTCTCCCGCGA 60.949 55.000 27.08 0.00 35.92 5.87
4257 4311 1.497278 CAACATGTTGTCTCCCGCG 59.503 57.895 27.08 0.00 35.92 6.46
4258 4312 0.889186 ACCAACATGTTGTCTCCCGC 60.889 55.000 31.20 0.00 38.85 6.13
4259 4313 1.535462 GAACCAACATGTTGTCTCCCG 59.465 52.381 31.20 19.59 38.85 5.14
4260 4314 2.582052 TGAACCAACATGTTGTCTCCC 58.418 47.619 31.20 17.91 38.85 4.30
4261 4315 6.404734 GGAATATGAACCAACATGTTGTCTCC 60.405 42.308 31.20 21.58 38.85 3.71
4262 4316 6.150976 TGGAATATGAACCAACATGTTGTCTC 59.849 38.462 31.20 25.94 38.85 3.36
4263 4317 6.009589 TGGAATATGAACCAACATGTTGTCT 58.990 36.000 31.20 20.31 38.85 3.41
4264 4318 6.266168 TGGAATATGAACCAACATGTTGTC 57.734 37.500 31.20 24.24 38.85 3.18
4302 4356 1.141053 AGTGAAGAAAGCGAACACCCT 59.859 47.619 0.00 0.00 32.76 4.34
4303 4357 1.594331 AGTGAAGAAAGCGAACACCC 58.406 50.000 0.00 0.00 32.76 4.61
4331 4430 6.549433 ACATGGAAAATTTGGATATGCAGT 57.451 33.333 0.00 0.00 0.00 4.40
4370 4469 8.025445 GCAAATCATCATAGTTTTCACAGAAGT 58.975 33.333 0.00 0.00 0.00 3.01
4387 4486 7.543172 TGTTAAAGAATCTGCAAGCAAATCATC 59.457 33.333 0.00 0.00 0.00 2.92
4405 4504 7.148086 CCAAATCCGATTCTCCAATGTTAAAGA 60.148 37.037 0.00 0.00 0.00 2.52
4406 4505 6.974622 CCAAATCCGATTCTCCAATGTTAAAG 59.025 38.462 0.00 0.00 0.00 1.85
4407 4506 6.435904 ACCAAATCCGATTCTCCAATGTTAAA 59.564 34.615 0.00 0.00 0.00 1.52
4408 4507 5.949354 ACCAAATCCGATTCTCCAATGTTAA 59.051 36.000 0.00 0.00 0.00 2.01
4490 4595 5.374071 TCTTTTCCTCAACAGTAAAGGTCC 58.626 41.667 0.00 0.00 0.00 4.46
4502 4607 5.567037 TCTCACCTTCATCTTTTCCTCAA 57.433 39.130 0.00 0.00 0.00 3.02
4539 4644 5.817296 TCATCTCTACATAATGTGGTTGTGC 59.183 40.000 0.00 0.00 32.67 4.57
4584 4689 1.672363 CACTGAGCACTTGACTGCAAA 59.328 47.619 0.00 0.00 39.86 3.68
4634 4746 3.550437 ACACATGAGATCTAACCAGGC 57.450 47.619 0.00 0.00 0.00 4.85
4650 4762 3.777106 ATCTTCTCCTTCAGCAACACA 57.223 42.857 0.00 0.00 0.00 3.72
4668 4780 2.303022 TCTGGAGTCTGGACCAACAATC 59.697 50.000 0.00 0.00 35.67 2.67
4669 4781 2.338809 TCTGGAGTCTGGACCAACAAT 58.661 47.619 0.00 0.00 35.67 2.71
4670 4782 1.801242 TCTGGAGTCTGGACCAACAA 58.199 50.000 0.00 0.00 35.67 2.83
4672 4784 1.002544 CCTTCTGGAGTCTGGACCAAC 59.997 57.143 0.00 0.00 35.67 3.77
4673 4785 1.352083 CCTTCTGGAGTCTGGACCAA 58.648 55.000 0.00 0.00 35.67 3.67
4674 4786 1.194781 GCCTTCTGGAGTCTGGACCA 61.195 60.000 0.00 0.00 34.57 4.02
4675 4787 1.599576 GCCTTCTGGAGTCTGGACC 59.400 63.158 0.00 0.00 34.57 4.46
4676 4788 1.194781 TGGCCTTCTGGAGTCTGGAC 61.195 60.000 3.32 0.00 34.57 4.02
4677 4789 0.252881 ATGGCCTTCTGGAGTCTGGA 60.253 55.000 3.32 0.00 34.57 3.86
4678 4790 0.622665 AATGGCCTTCTGGAGTCTGG 59.377 55.000 3.32 0.00 34.57 3.86
4679 4791 2.290514 TGAAATGGCCTTCTGGAGTCTG 60.291 50.000 3.32 0.00 34.57 3.51
4680 4792 1.988107 TGAAATGGCCTTCTGGAGTCT 59.012 47.619 3.32 0.00 34.57 3.24
4681 4793 2.496899 TGAAATGGCCTTCTGGAGTC 57.503 50.000 3.32 0.00 34.57 3.36
4682 4794 3.463048 AATGAAATGGCCTTCTGGAGT 57.537 42.857 3.32 0.00 34.57 3.85
4683 4795 6.475596 AAATAATGAAATGGCCTTCTGGAG 57.524 37.500 3.32 0.00 34.57 3.86
4684 4796 6.039270 CGTAAATAATGAAATGGCCTTCTGGA 59.961 38.462 3.32 0.00 34.57 3.86
4685 4797 6.039270 TCGTAAATAATGAAATGGCCTTCTGG 59.961 38.462 3.32 0.00 0.00 3.86
4686 4798 7.026631 TCGTAAATAATGAAATGGCCTTCTG 57.973 36.000 3.32 0.00 0.00 3.02
4687 4799 7.339466 AGTTCGTAAATAATGAAATGGCCTTCT 59.661 33.333 3.32 0.00 34.88 2.85
4688 4800 7.480810 AGTTCGTAAATAATGAAATGGCCTTC 58.519 34.615 3.32 0.02 34.88 3.46
4689 4801 7.404671 AGTTCGTAAATAATGAAATGGCCTT 57.595 32.000 3.32 0.00 34.88 4.35
4690 4802 7.257722 CAAGTTCGTAAATAATGAAATGGCCT 58.742 34.615 3.32 0.00 34.88 5.19
4691 4803 6.019881 GCAAGTTCGTAAATAATGAAATGGCC 60.020 38.462 0.00 0.00 40.65 5.36
4692 4804 6.529829 TGCAAGTTCGTAAATAATGAAATGGC 59.470 34.615 0.95 0.95 44.74 4.40
4693 4805 7.967854 TCTGCAAGTTCGTAAATAATGAAATGG 59.032 33.333 0.00 0.00 34.88 3.16
4694 4806 8.788813 GTCTGCAAGTTCGTAAATAATGAAATG 58.211 33.333 0.00 0.00 34.88 2.32
4695 4807 8.511321 TGTCTGCAAGTTCGTAAATAATGAAAT 58.489 29.630 0.00 0.00 34.88 2.17
4696 4808 7.866729 TGTCTGCAAGTTCGTAAATAATGAAA 58.133 30.769 0.00 0.00 34.88 2.69
4697 4809 7.428282 TGTCTGCAAGTTCGTAAATAATGAA 57.572 32.000 0.00 0.00 33.76 2.57
4698 4810 7.428282 TTGTCTGCAAGTTCGTAAATAATGA 57.572 32.000 0.00 0.00 33.76 2.57
4699 4811 8.096400 CATTGTCTGCAAGTTCGTAAATAATG 57.904 34.615 0.00 0.00 38.10 1.90
4728 4840 8.017878 TGAGCTTCAAACTCATGGATTTATCCA 61.018 37.037 13.54 13.54 45.33 3.41
4729 4841 6.319658 TGAGCTTCAAACTCATGGATTTATCC 59.680 38.462 1.66 1.66 41.97 2.59
4730 4842 7.325660 TGAGCTTCAAACTCATGGATTTATC 57.674 36.000 0.00 0.00 39.21 1.75
4731 4843 7.707624 TTGAGCTTCAAACTCATGGATTTAT 57.292 32.000 0.00 0.00 43.40 1.40
4732 4844 7.448161 TCTTTGAGCTTCAAACTCATGGATTTA 59.552 33.333 7.09 0.00 43.40 1.40
4733 4845 6.266103 TCTTTGAGCTTCAAACTCATGGATTT 59.734 34.615 7.09 0.00 43.40 2.17
4734 4846 5.771666 TCTTTGAGCTTCAAACTCATGGATT 59.228 36.000 7.09 0.00 43.40 3.01
4735 4847 5.319453 TCTTTGAGCTTCAAACTCATGGAT 58.681 37.500 7.09 0.00 43.40 3.41
4736 4848 4.717877 TCTTTGAGCTTCAAACTCATGGA 58.282 39.130 7.09 0.00 43.40 3.41
4737 4849 5.443185 TTCTTTGAGCTTCAAACTCATGG 57.557 39.130 7.09 0.00 43.40 3.66
4738 4850 7.760131 TTTTTCTTTGAGCTTCAAACTCATG 57.240 32.000 7.09 0.00 43.40 3.07
4760 4872 6.758886 TGTTGTTTGCATACCTTCGAATTTTT 59.241 30.769 0.00 0.00 0.00 1.94
4761 4873 6.276847 TGTTGTTTGCATACCTTCGAATTTT 58.723 32.000 0.00 0.00 0.00 1.82
4762 4874 5.837437 TGTTGTTTGCATACCTTCGAATTT 58.163 33.333 0.00 0.00 0.00 1.82
4763 4875 5.446143 TGTTGTTTGCATACCTTCGAATT 57.554 34.783 0.00 0.00 0.00 2.17
4764 4876 5.446143 TTGTTGTTTGCATACCTTCGAAT 57.554 34.783 0.00 0.00 0.00 3.34
4765 4877 4.902443 TTGTTGTTTGCATACCTTCGAA 57.098 36.364 4.77 0.00 0.00 3.71
4766 4878 6.150307 ACATATTGTTGTTTGCATACCTTCGA 59.850 34.615 4.77 0.00 0.00 3.71
4767 4879 6.321717 ACATATTGTTGTTTGCATACCTTCG 58.678 36.000 4.77 0.00 0.00 3.79
4768 4880 8.458843 AGTACATATTGTTGTTTGCATACCTTC 58.541 33.333 4.77 0.00 0.00 3.46
4769 4881 8.348285 AGTACATATTGTTGTTTGCATACCTT 57.652 30.769 4.77 0.00 0.00 3.50
4770 4882 7.067008 GGAGTACATATTGTTGTTTGCATACCT 59.933 37.037 4.77 0.00 0.00 3.08
4771 4883 7.193595 GGAGTACATATTGTTGTTTGCATACC 58.806 38.462 4.77 0.00 0.00 2.73
4772 4884 7.067008 AGGGAGTACATATTGTTGTTTGCATAC 59.933 37.037 0.00 0.00 0.00 2.39
4773 4885 7.116075 AGGGAGTACATATTGTTGTTTGCATA 58.884 34.615 0.00 0.00 0.00 3.14
4774 4886 5.951747 AGGGAGTACATATTGTTGTTTGCAT 59.048 36.000 0.00 0.00 0.00 3.96
4775 4887 5.321102 AGGGAGTACATATTGTTGTTTGCA 58.679 37.500 0.00 0.00 0.00 4.08
4776 4888 5.163652 GGAGGGAGTACATATTGTTGTTTGC 60.164 44.000 0.00 0.00 0.00 3.68
4777 4889 5.064707 CGGAGGGAGTACATATTGTTGTTTG 59.935 44.000 0.00 0.00 0.00 2.93
4778 4890 5.183228 CGGAGGGAGTACATATTGTTGTTT 58.817 41.667 0.00 0.00 0.00 2.83
4779 4891 4.224370 ACGGAGGGAGTACATATTGTTGTT 59.776 41.667 0.00 0.00 0.00 2.83
4780 4892 3.773119 ACGGAGGGAGTACATATTGTTGT 59.227 43.478 0.00 0.00 0.00 3.32
4781 4893 4.369182 GACGGAGGGAGTACATATTGTTG 58.631 47.826 0.00 0.00 0.00 3.33
4782 4894 3.387050 GGACGGAGGGAGTACATATTGTT 59.613 47.826 0.00 0.00 0.00 2.83
4783 4895 2.963782 GGACGGAGGGAGTACATATTGT 59.036 50.000 0.00 0.00 0.00 2.71
4784 4896 2.299297 GGGACGGAGGGAGTACATATTG 59.701 54.545 0.00 0.00 0.00 1.90
4785 4897 2.090943 TGGGACGGAGGGAGTACATATT 60.091 50.000 0.00 0.00 0.00 1.28
4786 4898 1.502039 TGGGACGGAGGGAGTACATAT 59.498 52.381 0.00 0.00 0.00 1.78
4787 4899 0.928505 TGGGACGGAGGGAGTACATA 59.071 55.000 0.00 0.00 0.00 2.29
4788 4900 0.042131 TTGGGACGGAGGGAGTACAT 59.958 55.000 0.00 0.00 0.00 2.29
4789 4901 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
4790 4902 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
4791 4903 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4792 4904 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4793 4905 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4794 4906 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4795 4907 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4796 4908 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4797 4909 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
4798 4910 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
4799 4911 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
4800 4912 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
4801 4913 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
4802 4914 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
4803 4915 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
4804 4916 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
4810 4922 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
4811 4923 8.788325 AAAGTTAGTACAAAGTTGAGACACTT 57.212 30.769 0.00 0.98 38.74 3.16
4812 4924 9.530633 CTAAAGTTAGTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 0.00 3.55
4813 4925 9.310716 ACTAAAGTTAGTACAAAGTTGAGACAC 57.689 33.333 1.81 0.00 41.92 3.67
4814 4926 9.309516 CACTAAAGTTAGTACAAAGTTGAGACA 57.690 33.333 3.46 0.00 41.82 3.41
4815 4927 9.310716 ACACTAAAGTTAGTACAAAGTTGAGAC 57.689 33.333 3.46 0.00 41.82 3.36
4850 4962 9.856162 TCCCAAAATAAGTGTCTTAAACTTAGT 57.144 29.630 4.92 0.14 41.95 2.24
4852 4964 8.776470 CGTCCCAAAATAAGTGTCTTAAACTTA 58.224 33.333 1.70 1.70 42.63 2.24
4853 4965 7.255346 CCGTCCCAAAATAAGTGTCTTAAACTT 60.255 37.037 0.00 0.00 40.82 2.66
4854 4966 6.206048 CCGTCCCAAAATAAGTGTCTTAAACT 59.794 38.462 0.00 0.00 0.00 2.66
4855 4967 6.376177 CCGTCCCAAAATAAGTGTCTTAAAC 58.624 40.000 0.00 0.00 0.00 2.01
4856 4968 5.474189 CCCGTCCCAAAATAAGTGTCTTAAA 59.526 40.000 0.00 0.00 0.00 1.52
4857 4969 5.005094 CCCGTCCCAAAATAAGTGTCTTAA 58.995 41.667 0.00 0.00 0.00 1.85
4858 4970 4.566070 CCCCGTCCCAAAATAAGTGTCTTA 60.566 45.833 0.00 0.00 0.00 2.10
4859 4971 3.418047 CCCGTCCCAAAATAAGTGTCTT 58.582 45.455 0.00 0.00 0.00 3.01
4860 4972 2.290705 CCCCGTCCCAAAATAAGTGTCT 60.291 50.000 0.00 0.00 0.00 3.41
4861 4973 2.089201 CCCCGTCCCAAAATAAGTGTC 58.911 52.381 0.00 0.00 0.00 3.67
4862 4974 1.272258 CCCCCGTCCCAAAATAAGTGT 60.272 52.381 0.00 0.00 0.00 3.55
4863 4975 1.004979 TCCCCCGTCCCAAAATAAGTG 59.995 52.381 0.00 0.00 0.00 3.16
4864 4976 1.283905 CTCCCCCGTCCCAAAATAAGT 59.716 52.381 0.00 0.00 0.00 2.24
4865 4977 1.283905 ACTCCCCCGTCCCAAAATAAG 59.716 52.381 0.00 0.00 0.00 1.73
4866 4978 1.374572 ACTCCCCCGTCCCAAAATAA 58.625 50.000 0.00 0.00 0.00 1.40
4867 4979 1.839354 GTACTCCCCCGTCCCAAAATA 59.161 52.381 0.00 0.00 0.00 1.40
4868 4980 0.622136 GTACTCCCCCGTCCCAAAAT 59.378 55.000 0.00 0.00 0.00 1.82
4869 4981 0.474273 AGTACTCCCCCGTCCCAAAA 60.474 55.000 0.00 0.00 0.00 2.44
4870 4982 0.413037 TAGTACTCCCCCGTCCCAAA 59.587 55.000 0.00 0.00 0.00 3.28
4871 4983 0.638292 ATAGTACTCCCCCGTCCCAA 59.362 55.000 0.00 0.00 0.00 4.12
4872 4984 1.533187 TATAGTACTCCCCCGTCCCA 58.467 55.000 0.00 0.00 0.00 4.37
4873 4985 2.915657 ATATAGTACTCCCCCGTCCC 57.084 55.000 0.00 0.00 0.00 4.46
4874 4986 4.154942 TGAAATATAGTACTCCCCCGTCC 58.845 47.826 0.00 0.00 0.00 4.79
4875 4987 5.075493 TCTGAAATATAGTACTCCCCCGTC 58.925 45.833 0.00 0.00 0.00 4.79
4876 4988 5.070823 TCTGAAATATAGTACTCCCCCGT 57.929 43.478 0.00 0.00 0.00 5.28
4877 4989 6.351117 GGAATCTGAAATATAGTACTCCCCCG 60.351 46.154 0.00 0.00 0.00 5.73
4878 4990 6.731448 AGGAATCTGAAATATAGTACTCCCCC 59.269 42.308 0.00 0.00 0.00 5.40
4879 4991 7.093245 GGAGGAATCTGAAATATAGTACTCCCC 60.093 44.444 0.00 0.00 34.92 4.81
4880 4992 7.363094 CGGAGGAATCTGAAATATAGTACTCCC 60.363 44.444 0.00 0.00 37.02 4.30
4881 4993 7.177041 ACGGAGGAATCTGAAATATAGTACTCC 59.823 40.741 0.00 0.00 37.00 3.85
4882 4994 8.113173 ACGGAGGAATCTGAAATATAGTACTC 57.887 38.462 0.00 0.00 0.00 2.59
4883 4995 7.177041 GGACGGAGGAATCTGAAATATAGTACT 59.823 40.741 0.00 0.00 0.00 2.73
4884 4996 7.314393 GGACGGAGGAATCTGAAATATAGTAC 58.686 42.308 0.00 0.00 0.00 2.73
4885 4997 6.436532 GGGACGGAGGAATCTGAAATATAGTA 59.563 42.308 0.00 0.00 0.00 1.82
4886 4998 5.246429 GGGACGGAGGAATCTGAAATATAGT 59.754 44.000 0.00 0.00 0.00 2.12
4887 4999 5.246203 TGGGACGGAGGAATCTGAAATATAG 59.754 44.000 0.00 0.00 0.00 1.31
4888 5000 5.152193 TGGGACGGAGGAATCTGAAATATA 58.848 41.667 0.00 0.00 0.00 0.86
4889 5001 3.973973 TGGGACGGAGGAATCTGAAATAT 59.026 43.478 0.00 0.00 0.00 1.28
4890 5002 3.380393 TGGGACGGAGGAATCTGAAATA 58.620 45.455 0.00 0.00 0.00 1.40
4891 5003 2.196595 TGGGACGGAGGAATCTGAAAT 58.803 47.619 0.00 0.00 0.00 2.17
4892 5004 1.651737 TGGGACGGAGGAATCTGAAA 58.348 50.000 0.00 0.00 0.00 2.69
4893 5005 1.651737 TTGGGACGGAGGAATCTGAA 58.348 50.000 0.00 0.00 0.00 3.02
4894 5006 1.651737 TTTGGGACGGAGGAATCTGA 58.348 50.000 0.00 0.00 0.00 3.27
4895 5007 2.489938 TTTTGGGACGGAGGAATCTG 57.510 50.000 0.00 0.00 0.00 2.90
4896 5008 4.227527 ACTTATTTTGGGACGGAGGAATCT 59.772 41.667 0.00 0.00 0.00 2.40
4897 5009 4.335594 CACTTATTTTGGGACGGAGGAATC 59.664 45.833 0.00 0.00 0.00 2.52
4898 5010 4.263771 ACACTTATTTTGGGACGGAGGAAT 60.264 41.667 0.00 0.00 0.00 3.01
4899 5011 3.073356 ACACTTATTTTGGGACGGAGGAA 59.927 43.478 0.00 0.00 0.00 3.36
4900 5012 2.640826 ACACTTATTTTGGGACGGAGGA 59.359 45.455 0.00 0.00 0.00 3.71
4901 5013 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4902 5014 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
4903 5015 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
4904 5016 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
4905 5017 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
4906 5018 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
4907 5019 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
4908 5020 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
4909 5021 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
4915 5027 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
4916 5028 8.788325 AAAGTTAGTACAAAGTTGAGACACTT 57.212 30.769 0.00 0.98 38.74 3.16
4917 5029 9.530633 CTAAAGTTAGTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 0.00 3.55
4918 5030 9.310716 ACTAAAGTTAGTACAAAGTTGAGACAC 57.689 33.333 1.81 0.00 41.92 3.67
4919 5031 9.309516 CACTAAAGTTAGTACAAAGTTGAGACA 57.690 33.333 3.46 0.00 41.82 3.41
4920 5032 9.310716 ACACTAAAGTTAGTACAAAGTTGAGAC 57.689 33.333 3.46 0.00 41.82 3.36
4941 5053 9.524496 TGATGGTAGTACTCTTCTTTTACACTA 57.476 33.333 0.00 0.00 0.00 2.74
4942 5054 8.418597 TGATGGTAGTACTCTTCTTTTACACT 57.581 34.615 0.00 0.00 0.00 3.55
4943 5055 9.303537 GATGATGGTAGTACTCTTCTTTTACAC 57.696 37.037 0.00 0.00 0.00 2.90
4944 5056 9.031537 TGATGATGGTAGTACTCTTCTTTTACA 57.968 33.333 0.00 0.00 0.00 2.41
4947 5059 9.606631 GAATGATGATGGTAGTACTCTTCTTTT 57.393 33.333 0.00 0.00 0.00 2.27
4948 5060 8.207545 GGAATGATGATGGTAGTACTCTTCTTT 58.792 37.037 0.00 3.96 0.00 2.52
4949 5061 7.345653 TGGAATGATGATGGTAGTACTCTTCTT 59.654 37.037 0.00 0.00 0.00 2.52
4950 5062 6.841229 TGGAATGATGATGGTAGTACTCTTCT 59.159 38.462 0.00 0.00 0.00 2.85
4951 5063 6.926272 GTGGAATGATGATGGTAGTACTCTTC 59.074 42.308 0.00 0.00 0.00 2.87
4952 5064 6.183361 GGTGGAATGATGATGGTAGTACTCTT 60.183 42.308 0.00 0.00 0.00 2.85
4953 5065 5.305644 GGTGGAATGATGATGGTAGTACTCT 59.694 44.000 0.00 0.00 0.00 3.24
4954 5066 5.542779 GGTGGAATGATGATGGTAGTACTC 58.457 45.833 0.00 0.00 0.00 2.59
4955 5067 4.039245 CGGTGGAATGATGATGGTAGTACT 59.961 45.833 0.00 0.00 0.00 2.73
4956 5068 4.307432 CGGTGGAATGATGATGGTAGTAC 58.693 47.826 0.00 0.00 0.00 2.73
4957 5069 3.323691 CCGGTGGAATGATGATGGTAGTA 59.676 47.826 0.00 0.00 0.00 1.82
4958 5070 2.104792 CCGGTGGAATGATGATGGTAGT 59.895 50.000 0.00 0.00 0.00 2.73
4959 5071 2.104792 ACCGGTGGAATGATGATGGTAG 59.895 50.000 6.12 0.00 0.00 3.18
4960 5072 2.123589 ACCGGTGGAATGATGATGGTA 58.876 47.619 6.12 0.00 0.00 3.25
4961 5073 0.918983 ACCGGTGGAATGATGATGGT 59.081 50.000 6.12 0.00 0.00 3.55
4962 5074 1.311859 CACCGGTGGAATGATGATGG 58.688 55.000 27.57 0.00 0.00 3.51
4963 5075 0.664761 GCACCGGTGGAATGATGATG 59.335 55.000 34.58 6.31 0.00 3.07
4964 5076 0.548031 AGCACCGGTGGAATGATGAT 59.452 50.000 34.58 2.59 0.00 2.45
4965 5077 0.107703 GAGCACCGGTGGAATGATGA 60.108 55.000 34.58 0.00 0.00 2.92
4966 5078 0.107508 AGAGCACCGGTGGAATGATG 60.108 55.000 34.58 8.47 0.00 3.07
4967 5079 0.107508 CAGAGCACCGGTGGAATGAT 60.108 55.000 34.58 8.29 0.00 2.45
4968 5080 1.191489 TCAGAGCACCGGTGGAATGA 61.191 55.000 34.58 16.30 0.00 2.57
4969 5081 1.021390 GTCAGAGCACCGGTGGAATG 61.021 60.000 34.58 10.89 0.00 2.67
4970 5082 1.296715 GTCAGAGCACCGGTGGAAT 59.703 57.895 34.58 9.01 0.00 3.01
4971 5083 2.741092 GTCAGAGCACCGGTGGAA 59.259 61.111 34.58 6.66 0.00 3.53
4972 5084 3.311110 GGTCAGAGCACCGGTGGA 61.311 66.667 34.58 20.76 0.00 4.02
4973 5085 3.625897 TGGTCAGAGCACCGGTGG 61.626 66.667 34.58 18.72 39.62 4.61
4974 5086 2.357517 GTGGTCAGAGCACCGGTG 60.358 66.667 30.66 30.66 40.47 4.94
4975 5087 2.100879 GAAGTGGTCAGAGCACCGGT 62.101 60.000 25.85 13.74 46.99 5.28
4976 5088 1.374758 GAAGTGGTCAGAGCACCGG 60.375 63.158 25.85 0.00 46.99 5.28
4977 5089 1.374758 GGAAGTGGTCAGAGCACCG 60.375 63.158 25.85 0.00 46.99 4.94
4978 5090 0.108585 TTGGAAGTGGTCAGAGCACC 59.891 55.000 25.85 13.81 46.99 5.01
4979 5091 1.070758 TCTTGGAAGTGGTCAGAGCAC 59.929 52.381 22.89 22.89 46.20 4.40
4980 5092 1.423584 TCTTGGAAGTGGTCAGAGCA 58.576 50.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.