Multiple sequence alignment - TraesCS4B01G127400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G127400 chr4B 100.000 9091 0 0 1 9091 166767769 166758679 0.000000e+00 16789.0
1 TraesCS4B01G127400 chrUn 96.762 6795 130 31 366 7117 216296540 216303287 0.000000e+00 11247.0
2 TraesCS4B01G127400 chrUn 93.760 657 19 7 7195 7830 216303288 216303943 0.000000e+00 966.0
3 TraesCS4B01G127400 chr4D 96.762 6795 130 31 366 7117 131324173 131330920 0.000000e+00 11247.0
4 TraesCS4B01G127400 chr4D 94.160 1250 62 9 7846 9091 131368366 131369608 0.000000e+00 1893.0
5 TraesCS4B01G127400 chr4D 93.760 657 19 7 7195 7830 131330921 131331576 0.000000e+00 966.0
6 TraesCS4B01G127400 chr4A 95.827 6327 140 29 879 7120 434733905 434727618 0.000000e+00 10107.0
7 TraesCS4B01G127400 chr4A 92.982 684 22 8 7198 7859 434727613 434726934 0.000000e+00 974.0
8 TraesCS4B01G127400 chr4A 92.383 407 12 9 459 862 434734346 434733956 6.160000e-156 562.0
9 TraesCS4B01G127400 chr4A 88.121 463 41 8 8641 9091 434726462 434726002 1.040000e-148 538.0
10 TraesCS4B01G127400 chr4A 88.143 447 29 9 8090 8533 434726935 434726510 2.260000e-140 510.0
11 TraesCS4B01G127400 chr4A 89.676 339 15 10 459 792 434890962 434890639 1.830000e-111 414.0
12 TraesCS4B01G127400 chr4A 96.721 61 2 0 375 435 434734608 434734548 1.610000e-17 102.0
13 TraesCS4B01G127400 chr4A 96.721 61 2 0 375 435 434891191 434891131 1.610000e-17 102.0
14 TraesCS4B01G127400 chr5B 88.308 1052 71 11 3771 4820 292963875 292964876 0.000000e+00 1214.0
15 TraesCS4B01G127400 chr5B 93.767 369 19 4 1 367 368714610 368714244 1.330000e-152 551.0
16 TraesCS4B01G127400 chr5B 78.378 740 126 31 5848 6568 577952698 577953422 5.010000e-122 449.0
17 TraesCS4B01G127400 chr5B 92.233 103 2 4 7107 7208 93472094 93472191 3.420000e-29 141.0
18 TraesCS4B01G127400 chr5B 92.857 98 2 3 7111 7208 570575717 570575625 4.430000e-28 137.0
19 TraesCS4B01G127400 chr6B 78.355 1252 232 31 2900 4134 618336688 618335459 0.000000e+00 774.0
20 TraesCS4B01G127400 chr6B 95.368 367 15 2 1 366 654179884 654180249 4.730000e-162 582.0
21 TraesCS4B01G127400 chr6B 88.679 106 12 0 7006 7111 618332465 618332360 7.410000e-26 130.0
22 TraesCS4B01G127400 chr6B 83.478 115 13 2 7006 7115 618325313 618325200 1.610000e-17 102.0
23 TraesCS4B01G127400 chr3A 78.313 1245 239 27 2901 4134 661968230 661969454 0.000000e+00 774.0
24 TraesCS4B01G127400 chr3A 76.447 1261 248 30 2885 4134 661929387 661930609 9.950000e-179 638.0
25 TraesCS4B01G127400 chr3A 79.212 736 118 20 3393 4123 661955212 661955917 6.390000e-131 479.0
26 TraesCS4B01G127400 chr3A 77.488 613 98 21 5943 6550 661971486 661972063 1.890000e-86 331.0
27 TraesCS4B01G127400 chr3A 76.797 612 104 21 5943 6550 661957700 661958277 8.870000e-80 309.0
28 TraesCS4B01G127400 chr3A 87.938 257 25 6 2003 2254 186504294 186504039 1.920000e-76 298.0
29 TraesCS4B01G127400 chr3A 86.022 93 13 0 1379 1471 661927587 661927679 5.810000e-17 100.0
30 TraesCS4B01G127400 chr3D 77.161 1261 242 30 2885 4134 527208176 527209401 0.000000e+00 691.0
31 TraesCS4B01G127400 chr3D 80.326 737 122 13 3393 4123 527218006 527218725 3.740000e-148 536.0
32 TraesCS4B01G127400 chr3D 77.209 645 106 23 5922 6560 527220840 527221449 1.130000e-88 339.0
33 TraesCS4B01G127400 chr3D 85.921 277 28 9 1989 2258 532172101 532171829 1.490000e-72 285.0
34 TraesCS4B01G127400 chr3D 77.750 400 72 13 2885 3272 527217510 527217904 7.100000e-56 230.0
35 TraesCS4B01G127400 chr3D 78.715 249 46 6 6308 6553 527564360 527564116 9.450000e-35 159.0
36 TraesCS4B01G127400 chr3D 87.387 111 14 0 7006 7116 527563938 527563828 2.660000e-25 128.0
37 TraesCS4B01G127400 chr3D 89.247 93 10 0 1379 1471 527206394 527206486 5.770000e-22 117.0
38 TraesCS4B01G127400 chr3D 93.750 64 4 0 6809 6872 61675464 61675401 7.510000e-16 97.1
39 TraesCS4B01G127400 chr6D 81.374 757 124 16 3384 4134 411406279 411405534 1.310000e-167 601.0
40 TraesCS4B01G127400 chr6D 88.333 120 13 1 7006 7125 411402604 411402486 9.520000e-30 143.0
41 TraesCS4B01G127400 chr6D 87.000 100 13 0 1379 1478 411407174 411407075 7.460000e-21 113.0
42 TraesCS4B01G127400 chr3B 94.624 372 17 3 1 370 680419298 680419668 2.850000e-159 573.0
43 TraesCS4B01G127400 chr3B 94.550 367 15 4 1 365 422309601 422309964 6.160000e-156 562.0
44 TraesCS4B01G127400 chr3B 94.022 368 17 4 1 366 823510582 823510946 3.710000e-153 553.0
45 TraesCS4B01G127400 chr3B 88.189 254 24 6 1996 2244 394097758 394098010 1.920000e-76 298.0
46 TraesCS4B01G127400 chr3B 82.724 301 43 7 5943 6242 697466521 697466813 9.060000e-65 259.0
47 TraesCS4B01G127400 chr3B 93.069 101 1 4 7108 7208 11017864 11017770 9.520000e-30 143.0
48 TraesCS4B01G127400 chr3B 89.216 102 11 0 6449 6550 697466989 697467090 2.660000e-25 128.0
49 TraesCS4B01G127400 chr3B 89.655 87 9 0 1137 1223 697462370 697462456 2.680000e-20 111.0
50 TraesCS4B01G127400 chr3B 79.545 132 16 7 1360 1481 697462534 697462664 5.850000e-12 84.2
51 TraesCS4B01G127400 chr1B 94.837 368 14 5 1 366 28492228 28492592 3.680000e-158 569.0
52 TraesCS4B01G127400 chr1B 94.293 368 18 3 1 366 656572773 656572407 2.220000e-155 560.0
53 TraesCS4B01G127400 chr1B 90.667 75 4 1 6810 6881 317578277 317578203 7.510000e-16 97.1
54 TraesCS4B01G127400 chr2B 94.133 375 18 4 1 373 799411370 799411742 1.320000e-157 568.0
55 TraesCS4B01G127400 chr2B 93.939 99 1 4 7110 7208 254691791 254691698 2.650000e-30 145.0
56 TraesCS4B01G127400 chr2B 92.308 104 3 4 7105 7208 541422695 541422793 9.520000e-30 143.0
57 TraesCS4B01G127400 chr2B 92.537 67 3 2 6811 6877 136176121 136176057 2.700000e-15 95.3
58 TraesCS4B01G127400 chr7B 94.444 360 15 5 1 358 105475276 105474920 4.800000e-152 549.0
59 TraesCS4B01G127400 chr7B 94.792 96 0 4 7113 7208 706195565 706195655 2.650000e-30 145.0
60 TraesCS4B01G127400 chr7B 89.565 115 5 6 7095 7208 34490092 34489984 1.230000e-28 139.0
61 TraesCS4B01G127400 chr6A 80.575 731 123 15 3409 4134 555987651 555986935 6.210000e-151 545.0
62 TraesCS4B01G127400 chr6A 78.017 605 99 15 5938 6539 555984886 555984313 5.220000e-92 350.0
63 TraesCS4B01G127400 chr6A 85.859 99 14 0 1379 1477 555988567 555988469 1.250000e-18 106.0
64 TraesCS4B01G127400 chr6A 77.344 128 19 6 8259 8379 193434475 193434599 5.890000e-07 67.6
65 TraesCS4B01G127400 chr5A 76.029 972 176 50 5848 6782 591140301 591141252 1.390000e-122 451.0
66 TraesCS4B01G127400 chr5A 87.692 260 28 2 1997 2252 571792405 571792146 5.340000e-77 300.0
67 TraesCS4B01G127400 chr5D 77.568 740 131 32 5848 6568 470756366 470757089 1.830000e-111 414.0
68 TraesCS4B01G127400 chr5D 77.237 637 113 30 5947 6568 470491365 470491984 2.430000e-90 344.0
69 TraesCS4B01G127400 chr5D 80.392 255 44 6 4276 4526 470486035 470486287 1.210000e-43 189.0
70 TraesCS4B01G127400 chr5D 93.204 103 2 3 7106 7208 445643736 445643833 7.360000e-31 147.0
71 TraesCS4B01G127400 chr5D 73.310 281 44 23 8247 8505 257935537 257935266 3.520000e-09 75.0
72 TraesCS4B01G127400 chr2A 87.023 262 30 4 1997 2254 566591775 566592036 8.930000e-75 292.0
73 TraesCS4B01G127400 chr2A 93.000 100 2 3 7109 7208 499563160 499563254 3.420000e-29 141.0
74 TraesCS4B01G127400 chr2A 94.030 67 2 1 6811 6877 84959175 84959111 5.810000e-17 100.0
75 TraesCS4B01G127400 chr2A 94.030 67 2 1 6811 6877 84974396 84974332 5.810000e-17 100.0
76 TraesCS4B01G127400 chr2A 91.045 67 5 1 6810 6876 176864669 176864734 1.260000e-13 89.8
77 TraesCS4B01G127400 chr2D 87.072 263 27 7 2003 2261 151386412 151386671 3.210000e-74 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G127400 chr4B 166758679 166767769 9090 True 16789.000000 16789 100.000000 1 9091 1 chr4B.!!$R1 9090
1 TraesCS4B01G127400 chrUn 216296540 216303943 7403 False 6106.500000 11247 95.261000 366 7830 2 chrUn.!!$F1 7464
2 TraesCS4B01G127400 chr4D 131324173 131331576 7403 False 6106.500000 11247 95.261000 366 7830 2 chr4D.!!$F2 7464
3 TraesCS4B01G127400 chr4D 131368366 131369608 1242 False 1893.000000 1893 94.160000 7846 9091 1 chr4D.!!$F1 1245
4 TraesCS4B01G127400 chr4A 434726002 434734608 8606 True 2132.166667 10107 92.362833 375 9091 6 chr4A.!!$R1 8716
5 TraesCS4B01G127400 chr4A 434890639 434891191 552 True 258.000000 414 93.198500 375 792 2 chr4A.!!$R2 417
6 TraesCS4B01G127400 chr5B 292963875 292964876 1001 False 1214.000000 1214 88.308000 3771 4820 1 chr5B.!!$F2 1049
7 TraesCS4B01G127400 chr5B 577952698 577953422 724 False 449.000000 449 78.378000 5848 6568 1 chr5B.!!$F3 720
8 TraesCS4B01G127400 chr6B 618332360 618336688 4328 True 452.000000 774 83.517000 2900 7111 2 chr6B.!!$R2 4211
9 TraesCS4B01G127400 chr3A 661968230 661972063 3833 False 552.500000 774 77.900500 2901 6550 2 chr3A.!!$F3 3649
10 TraesCS4B01G127400 chr3A 661955212 661958277 3065 False 394.000000 479 78.004500 3393 6550 2 chr3A.!!$F2 3157
11 TraesCS4B01G127400 chr3A 661927587 661930609 3022 False 369.000000 638 81.234500 1379 4134 2 chr3A.!!$F1 2755
12 TraesCS4B01G127400 chr3D 527206394 527209401 3007 False 404.000000 691 83.204000 1379 4134 2 chr3D.!!$F1 2755
13 TraesCS4B01G127400 chr3D 527217510 527221449 3939 False 368.333333 536 78.428333 2885 6560 3 chr3D.!!$F2 3675
14 TraesCS4B01G127400 chr6D 411402486 411407174 4688 True 285.666667 601 85.569000 1379 7125 3 chr6D.!!$R1 5746
15 TraesCS4B01G127400 chr6A 555984313 555988567 4254 True 333.666667 545 81.483667 1379 6539 3 chr6A.!!$R1 5160
16 TraesCS4B01G127400 chr5A 591140301 591141252 951 False 451.000000 451 76.029000 5848 6782 1 chr5A.!!$F1 934
17 TraesCS4B01G127400 chr5D 470756366 470757089 723 False 414.000000 414 77.568000 5848 6568 1 chr5D.!!$F4 720
18 TraesCS4B01G127400 chr5D 470491365 470491984 619 False 344.000000 344 77.237000 5947 6568 1 chr5D.!!$F3 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.034337 TGGCGGTAGGTTCAGACAAC 59.966 55.000 0.00 0.00 0.00 3.32 F
640 824 0.037790 GAGGCGGCCAGATCATCTAC 60.038 60.000 23.09 0.00 0.00 2.59 F
642 826 0.320247 GGCGGCCAGATCATCTACAG 60.320 60.000 15.62 0.00 0.00 2.74 F
1341 1622 0.613012 GGCCTTGCTTCACCAATCCT 60.613 55.000 0.00 0.00 0.00 3.24 F
1342 1623 0.813821 GCCTTGCTTCACCAATCCTC 59.186 55.000 0.00 0.00 0.00 3.71 F
2578 2897 1.133790 GGAAGCATCATGTGTGCCTTC 59.866 52.381 17.90 17.96 43.50 3.46 F
3522 4926 0.526524 CGTTCTCGGATCAGGTCAGC 60.527 60.000 0.00 0.00 0.00 4.26 F
4328 6410 0.396435 TGATCCACGCAGGTTCTTGT 59.604 50.000 7.00 0.00 37.08 3.16 F
4991 7185 1.135527 TCTCCCACGGTATGCTTTACG 59.864 52.381 0.00 0.00 0.00 3.18 F
5682 8036 1.892474 TGGAAAAGTACAGGCAATGGC 59.108 47.619 0.00 0.00 40.13 4.40 F
7071 9552 3.898482 TCCGAGTGACATAGATCCTCAA 58.102 45.455 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1049 1294 0.103572 AGTTGTGCAAGCAAGGCAAG 59.896 50.000 0.00 0.00 43.91 4.01 R
1804 2099 0.742505 TCGGCCTTGGACGTGTATAG 59.257 55.000 15.02 0.00 0.00 1.31 R
2146 2441 6.125029 ACATTTACATCTAGAATGCCAAGCT 58.875 36.000 0.00 0.00 34.86 3.74 R
2700 3822 4.282950 ACATGCATCACGATAAGCAAAG 57.717 40.909 0.00 0.00 40.76 2.77 R
3522 4926 1.056103 CTGTTCGTCGCAACTCTGAG 58.944 55.000 2.45 2.45 0.00 3.35 R
3932 5375 2.243221 AGACCTCATATTTGCCTGCCTT 59.757 45.455 0.00 0.00 0.00 4.35 R
5234 7430 0.951040 GCCGACTTGAGGAACAGTGG 60.951 60.000 0.00 0.00 0.00 4.00 R
5990 8379 0.038067 CACGATGTACAACGGTGGGA 60.038 55.000 26.27 0.00 0.00 4.37 R
6390 8795 4.129380 CAGATTGCGGGAACATCTATTGA 58.871 43.478 0.00 0.00 0.00 2.57 R
7452 9937 1.041447 TCCTCGAACCTTCCGGATCC 61.041 60.000 4.15 0.00 0.00 3.36 R
8720 11238 0.827507 ACCATGTTGGACACCAAGGC 60.828 55.000 3.32 0.00 44.82 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.065110 GGGCGACTTTGAGCAGTT 57.935 55.556 0.00 0.00 34.54 3.16
18 19 2.331265 GGGCGACTTTGAGCAGTTT 58.669 52.632 0.00 0.00 34.54 2.66
19 20 0.040067 GGGCGACTTTGAGCAGTTTG 60.040 55.000 0.00 0.00 34.54 2.93
20 21 0.661483 GGCGACTTTGAGCAGTTTGC 60.661 55.000 0.00 0.00 45.46 3.68
31 32 2.306799 GCAGTTTGCTCTGTTCTTCG 57.693 50.000 0.00 0.00 40.96 3.79
32 33 1.599542 GCAGTTTGCTCTGTTCTTCGT 59.400 47.619 0.00 0.00 40.96 3.85
33 34 2.600792 GCAGTTTGCTCTGTTCTTCGTG 60.601 50.000 0.00 0.00 40.96 4.35
34 35 2.032549 CAGTTTGCTCTGTTCTTCGTGG 60.033 50.000 0.00 0.00 0.00 4.94
35 36 1.940613 GTTTGCTCTGTTCTTCGTGGT 59.059 47.619 0.00 0.00 0.00 4.16
36 37 1.581934 TTGCTCTGTTCTTCGTGGTG 58.418 50.000 0.00 0.00 0.00 4.17
37 38 0.249868 TGCTCTGTTCTTCGTGGTGG 60.250 55.000 0.00 0.00 0.00 4.61
38 39 0.951040 GCTCTGTTCTTCGTGGTGGG 60.951 60.000 0.00 0.00 0.00 4.61
39 40 0.320771 CTCTGTTCTTCGTGGTGGGG 60.321 60.000 0.00 0.00 0.00 4.96
40 41 1.302511 CTGTTCTTCGTGGTGGGGG 60.303 63.158 0.00 0.00 0.00 5.40
69 70 3.347590 GGGGGAGAAAGGGGTGGG 61.348 72.222 0.00 0.00 0.00 4.61
70 71 3.347590 GGGGAGAAAGGGGTGGGG 61.348 72.222 0.00 0.00 0.00 4.96
71 72 3.347590 GGGAGAAAGGGGTGGGGG 61.348 72.222 0.00 0.00 0.00 5.40
72 73 4.062032 GGAGAAAGGGGTGGGGGC 62.062 72.222 0.00 0.00 0.00 5.80
73 74 4.426313 GAGAAAGGGGTGGGGGCG 62.426 72.222 0.00 0.00 0.00 6.13
91 92 4.914388 GCCGGCCCGCGGTTTATA 62.914 66.667 26.12 0.00 0.00 0.98
92 93 2.031465 CCGGCCCGCGGTTTATAT 59.969 61.111 26.12 0.00 0.00 0.86
93 94 1.292860 CCGGCCCGCGGTTTATATA 59.707 57.895 26.12 0.00 0.00 0.86
94 95 0.108041 CCGGCCCGCGGTTTATATAT 60.108 55.000 26.12 0.00 0.00 0.86
95 96 1.003851 CGGCCCGCGGTTTATATATG 58.996 55.000 26.12 6.10 0.00 1.78
96 97 1.673626 CGGCCCGCGGTTTATATATGT 60.674 52.381 26.12 0.00 0.00 2.29
97 98 2.004733 GGCCCGCGGTTTATATATGTC 58.995 52.381 26.12 2.18 0.00 3.06
98 99 2.004733 GCCCGCGGTTTATATATGTCC 58.995 52.381 26.12 0.00 0.00 4.02
99 100 2.613474 GCCCGCGGTTTATATATGTCCA 60.613 50.000 26.12 0.00 0.00 4.02
100 101 2.997986 CCCGCGGTTTATATATGTCCAC 59.002 50.000 26.12 0.00 0.00 4.02
101 102 3.555377 CCCGCGGTTTATATATGTCCACA 60.555 47.826 26.12 0.00 0.00 4.17
102 103 3.430895 CCGCGGTTTATATATGTCCACAC 59.569 47.826 19.50 0.00 0.00 3.82
103 104 3.430895 CGCGGTTTATATATGTCCACACC 59.569 47.826 0.00 0.00 0.00 4.16
104 105 3.749609 GCGGTTTATATATGTCCACACCC 59.250 47.826 0.00 0.00 0.00 4.61
105 106 4.504340 GCGGTTTATATATGTCCACACCCT 60.504 45.833 0.00 0.00 0.00 4.34
106 107 5.279607 GCGGTTTATATATGTCCACACCCTA 60.280 44.000 0.00 0.00 0.00 3.53
107 108 6.161381 CGGTTTATATATGTCCACACCCTAC 58.839 44.000 0.00 0.00 0.00 3.18
108 109 6.470278 GGTTTATATATGTCCACACCCTACC 58.530 44.000 0.00 0.00 0.00 3.18
109 110 5.988310 TTATATATGTCCACACCCTACCG 57.012 43.478 0.00 0.00 0.00 4.02
110 111 2.170012 ATATGTCCACACCCTACCGT 57.830 50.000 0.00 0.00 0.00 4.83
111 112 1.477553 TATGTCCACACCCTACCGTC 58.522 55.000 0.00 0.00 0.00 4.79
112 113 1.601419 ATGTCCACACCCTACCGTCG 61.601 60.000 0.00 0.00 0.00 5.12
113 114 2.677524 TCCACACCCTACCGTCGG 60.678 66.667 10.48 10.48 0.00 4.79
114 115 2.677524 CCACACCCTACCGTCGGA 60.678 66.667 20.51 0.31 0.00 4.55
115 116 2.707849 CCACACCCTACCGTCGGAG 61.708 68.421 20.51 10.82 0.00 4.63
116 117 1.676635 CACACCCTACCGTCGGAGA 60.677 63.158 20.51 4.24 0.00 3.71
127 128 2.672908 TCGGAGACTCTGGCGGTA 59.327 61.111 11.45 0.00 0.00 4.02
128 129 1.451567 TCGGAGACTCTGGCGGTAG 60.452 63.158 11.45 0.00 0.00 3.18
129 130 2.482333 CGGAGACTCTGGCGGTAGG 61.482 68.421 3.07 0.00 0.00 3.18
130 131 1.380112 GGAGACTCTGGCGGTAGGT 60.380 63.158 1.74 0.00 0.00 3.08
131 132 0.971447 GGAGACTCTGGCGGTAGGTT 60.971 60.000 1.74 0.00 0.00 3.50
132 133 0.456628 GAGACTCTGGCGGTAGGTTC 59.543 60.000 0.00 0.00 0.00 3.62
133 134 0.251653 AGACTCTGGCGGTAGGTTCA 60.252 55.000 0.00 0.00 0.00 3.18
134 135 0.173708 GACTCTGGCGGTAGGTTCAG 59.826 60.000 0.00 0.00 0.00 3.02
135 136 0.251653 ACTCTGGCGGTAGGTTCAGA 60.252 55.000 0.00 0.00 35.32 3.27
136 137 0.173708 CTCTGGCGGTAGGTTCAGAC 59.826 60.000 0.00 0.00 33.36 3.51
137 138 0.541063 TCTGGCGGTAGGTTCAGACA 60.541 55.000 0.00 0.00 32.10 3.41
138 139 0.320374 CTGGCGGTAGGTTCAGACAA 59.680 55.000 0.00 0.00 0.00 3.18
139 140 0.034337 TGGCGGTAGGTTCAGACAAC 59.966 55.000 0.00 0.00 0.00 3.32
140 141 0.672711 GGCGGTAGGTTCAGACAACC 60.673 60.000 0.00 0.00 40.58 3.77
147 148 2.075979 GGTTCAGACAACCTACCGTC 57.924 55.000 0.00 0.00 37.34 4.79
148 149 1.668047 GGTTCAGACAACCTACCGTCG 60.668 57.143 0.00 0.00 37.23 5.12
149 150 0.599558 TTCAGACAACCTACCGTCGG 59.400 55.000 10.48 10.48 37.23 4.79
150 151 1.214589 CAGACAACCTACCGTCGGG 59.785 63.158 17.28 0.00 37.23 5.14
151 152 2.125793 GACAACCTACCGTCGGGC 60.126 66.667 17.28 0.00 36.48 6.13
152 153 3.976902 GACAACCTACCGTCGGGCG 62.977 68.421 17.28 5.64 40.95 6.13
173 174 4.789075 CGGCGGTAGGTGTGACGG 62.789 72.222 0.00 0.00 0.00 4.79
174 175 3.376078 GGCGGTAGGTGTGACGGA 61.376 66.667 0.00 0.00 0.00 4.69
175 176 2.181021 GCGGTAGGTGTGACGGAG 59.819 66.667 0.00 0.00 0.00 4.63
176 177 2.882876 CGGTAGGTGTGACGGAGG 59.117 66.667 0.00 0.00 0.00 4.30
177 178 2.707849 CGGTAGGTGTGACGGAGGG 61.708 68.421 0.00 0.00 0.00 4.30
178 179 2.356780 GGTAGGTGTGACGGAGGGG 61.357 68.421 0.00 0.00 0.00 4.79
179 180 2.038329 TAGGTGTGACGGAGGGGG 59.962 66.667 0.00 0.00 0.00 5.40
180 181 2.550456 TAGGTGTGACGGAGGGGGA 61.550 63.158 0.00 0.00 0.00 4.81
181 182 2.096707 TAGGTGTGACGGAGGGGGAA 62.097 60.000 0.00 0.00 0.00 3.97
182 183 2.346365 GTGTGACGGAGGGGGAAC 59.654 66.667 0.00 0.00 0.00 3.62
183 184 3.307906 TGTGACGGAGGGGGAACG 61.308 66.667 0.00 0.00 0.00 3.95
184 185 4.078516 GTGACGGAGGGGGAACGG 62.079 72.222 0.00 0.00 0.00 4.44
193 194 4.397832 GGGGAACGGCGGCAGTTA 62.398 66.667 18.14 0.00 31.14 2.24
194 195 2.124860 GGGAACGGCGGCAGTTAT 60.125 61.111 18.14 0.00 31.14 1.89
195 196 2.178235 GGGAACGGCGGCAGTTATC 61.178 63.158 18.14 12.96 31.14 1.75
196 197 2.522638 GGAACGGCGGCAGTTATCG 61.523 63.158 18.14 5.52 31.14 2.92
197 198 2.510691 AACGGCGGCAGTTATCGG 60.511 61.111 16.75 0.00 0.00 4.18
202 203 3.630148 CGGCAGTTATCGGCGCTG 61.630 66.667 10.86 10.86 45.66 5.18
203 204 2.202878 GGCAGTTATCGGCGCTGA 60.203 61.111 23.40 23.40 35.70 4.26
204 205 2.526120 GGCAGTTATCGGCGCTGAC 61.526 63.158 23.67 10.03 35.70 3.51
205 206 2.860628 GCAGTTATCGGCGCTGACG 61.861 63.158 23.67 10.02 44.07 4.35
206 207 1.516386 CAGTTATCGGCGCTGACGT 60.516 57.895 23.67 9.62 42.83 4.34
207 208 1.516386 AGTTATCGGCGCTGACGTG 60.516 57.895 23.67 0.00 42.83 4.49
208 209 2.202690 TTATCGGCGCTGACGTGG 60.203 61.111 23.67 0.00 42.83 4.94
209 210 2.702788 TTATCGGCGCTGACGTGGA 61.703 57.895 23.67 2.78 42.83 4.02
210 211 2.215465 TTATCGGCGCTGACGTGGAA 62.215 55.000 23.67 8.10 42.83 3.53
211 212 2.215465 TATCGGCGCTGACGTGGAAA 62.215 55.000 23.67 0.00 42.83 3.13
212 213 3.342627 CGGCGCTGACGTGGAAAA 61.343 61.111 11.90 0.00 42.83 2.29
213 214 2.887889 CGGCGCTGACGTGGAAAAA 61.888 57.895 11.90 0.00 42.83 1.94
214 215 1.579429 GGCGCTGACGTGGAAAAAT 59.421 52.632 7.64 0.00 42.83 1.82
215 216 0.039527 GGCGCTGACGTGGAAAAATT 60.040 50.000 7.64 0.00 42.83 1.82
216 217 1.601914 GGCGCTGACGTGGAAAAATTT 60.602 47.619 7.64 0.00 42.83 1.82
217 218 1.451651 GCGCTGACGTGGAAAAATTTG 59.548 47.619 0.00 0.00 42.83 2.32
218 219 1.451651 CGCTGACGTGGAAAAATTTGC 59.548 47.619 0.00 0.00 33.53 3.68
219 220 2.742774 GCTGACGTGGAAAAATTTGCT 58.257 42.857 0.00 0.00 0.00 3.91
220 221 3.608241 CGCTGACGTGGAAAAATTTGCTA 60.608 43.478 0.00 0.00 33.53 3.49
221 222 3.668656 GCTGACGTGGAAAAATTTGCTAC 59.331 43.478 0.00 0.00 0.00 3.58
222 223 4.226761 CTGACGTGGAAAAATTTGCTACC 58.773 43.478 0.00 0.00 0.00 3.18
223 224 3.231160 GACGTGGAAAAATTTGCTACCG 58.769 45.455 0.00 0.00 0.00 4.02
224 225 1.982913 CGTGGAAAAATTTGCTACCGC 59.017 47.619 0.00 0.00 0.00 5.68
225 226 2.333926 GTGGAAAAATTTGCTACCGCC 58.666 47.619 0.00 0.00 34.43 6.13
226 227 1.068194 TGGAAAAATTTGCTACCGCCG 60.068 47.619 0.00 0.00 34.43 6.46
227 228 0.989164 GAAAAATTTGCTACCGCCGC 59.011 50.000 0.00 0.00 34.43 6.53
228 229 0.315568 AAAAATTTGCTACCGCCGCA 59.684 45.000 0.00 0.00 35.22 5.69
229 230 0.109319 AAAATTTGCTACCGCCGCAG 60.109 50.000 0.00 0.00 38.80 5.18
230 231 1.241315 AAATTTGCTACCGCCGCAGT 61.241 50.000 0.00 0.00 38.80 4.40
231 232 1.922135 AATTTGCTACCGCCGCAGTG 61.922 55.000 0.00 0.00 38.80 3.66
246 247 3.524606 GTGCTCGGCGGTAGGCTA 61.525 66.667 7.21 0.00 42.94 3.93
247 248 2.520982 TGCTCGGCGGTAGGCTAT 60.521 61.111 7.21 0.00 42.94 2.97
248 249 1.228337 TGCTCGGCGGTAGGCTATA 60.228 57.895 7.21 0.00 42.94 1.31
249 250 1.212229 GCTCGGCGGTAGGCTATAC 59.788 63.158 7.21 0.00 42.94 1.47
250 251 1.500844 CTCGGCGGTAGGCTATACG 59.499 63.158 7.21 14.67 42.94 3.06
251 252 0.952497 CTCGGCGGTAGGCTATACGA 60.952 60.000 20.81 15.50 42.94 3.43
252 253 0.321919 TCGGCGGTAGGCTATACGAT 60.322 55.000 20.81 0.00 42.94 3.73
253 254 0.098376 CGGCGGTAGGCTATACGATC 59.902 60.000 20.81 12.60 42.94 3.69
254 255 0.455005 GGCGGTAGGCTATACGATCC 59.545 60.000 20.81 11.97 42.94 3.36
255 256 1.461559 GCGGTAGGCTATACGATCCT 58.538 55.000 20.81 0.00 39.11 3.24
256 257 2.636830 GCGGTAGGCTATACGATCCTA 58.363 52.381 20.81 0.00 39.11 2.94
260 261 1.461559 AGGCTATACGATCCTACCGC 58.538 55.000 0.00 0.00 0.00 5.68
261 262 0.455005 GGCTATACGATCCTACCGCC 59.545 60.000 0.00 0.00 0.00 6.13
262 263 0.098376 GCTATACGATCCTACCGCCG 59.902 60.000 0.00 0.00 0.00 6.46
263 264 0.731417 CTATACGATCCTACCGCCGG 59.269 60.000 0.00 0.00 0.00 6.13
264 265 0.677731 TATACGATCCTACCGCCGGG 60.678 60.000 8.57 0.00 40.11 5.73
271 272 4.530857 CTACCGCCGGGCCTCTTG 62.531 72.222 14.55 0.00 36.48 3.02
286 287 3.084786 CCTCTTGAAGGTAGGCAAAAGG 58.915 50.000 0.00 0.00 40.67 3.11
287 288 3.084786 CTCTTGAAGGTAGGCAAAAGGG 58.915 50.000 0.00 0.00 0.00 3.95
288 289 2.445525 TCTTGAAGGTAGGCAAAAGGGT 59.554 45.455 0.00 0.00 0.00 4.34
289 290 3.117284 TCTTGAAGGTAGGCAAAAGGGTT 60.117 43.478 0.00 0.00 0.00 4.11
290 291 4.105057 TCTTGAAGGTAGGCAAAAGGGTTA 59.895 41.667 0.00 0.00 0.00 2.85
291 292 4.456662 TGAAGGTAGGCAAAAGGGTTAA 57.543 40.909 0.00 0.00 0.00 2.01
292 293 4.805744 TGAAGGTAGGCAAAAGGGTTAAA 58.194 39.130 0.00 0.00 0.00 1.52
293 294 5.399113 TGAAGGTAGGCAAAAGGGTTAAAT 58.601 37.500 0.00 0.00 0.00 1.40
294 295 5.479027 TGAAGGTAGGCAAAAGGGTTAAATC 59.521 40.000 0.00 0.00 0.00 2.17
295 296 4.350245 AGGTAGGCAAAAGGGTTAAATCC 58.650 43.478 0.00 0.00 0.00 3.01
310 311 8.002984 GGGTTAAATCCCGAAATATTTTCAGA 57.997 34.615 1.43 0.29 37.93 3.27
311 312 7.919091 GGGTTAAATCCCGAAATATTTTCAGAC 59.081 37.037 1.43 0.00 37.93 3.51
312 313 8.683615 GGTTAAATCCCGAAATATTTTCAGACT 58.316 33.333 1.43 0.00 0.00 3.24
313 314 9.503427 GTTAAATCCCGAAATATTTTCAGACTG 57.497 33.333 1.43 0.00 0.00 3.51
314 315 7.938140 AAATCCCGAAATATTTTCAGACTGA 57.062 32.000 0.00 0.00 0.00 3.41
315 316 7.559590 AATCCCGAAATATTTTCAGACTGAG 57.440 36.000 5.10 0.00 0.00 3.35
316 317 5.428253 TCCCGAAATATTTTCAGACTGAGG 58.572 41.667 5.10 0.18 0.00 3.86
317 318 5.045869 TCCCGAAATATTTTCAGACTGAGGT 60.046 40.000 5.10 0.00 0.00 3.85
318 319 5.294552 CCCGAAATATTTTCAGACTGAGGTC 59.705 44.000 5.10 0.00 42.41 3.85
319 320 5.874810 CCGAAATATTTTCAGACTGAGGTCA 59.125 40.000 5.10 0.00 44.36 4.02
321 322 6.813649 CGAAATATTTTCAGACTGAGGTCAGA 59.186 38.462 13.99 0.00 46.59 3.27
322 323 7.493971 CGAAATATTTTCAGACTGAGGTCAGAT 59.506 37.037 13.99 0.00 46.59 2.90
323 324 8.729805 AAATATTTTCAGACTGAGGTCAGATC 57.270 34.615 13.99 7.54 46.59 2.75
324 325 7.673641 ATATTTTCAGACTGAGGTCAGATCT 57.326 36.000 13.99 9.49 46.59 2.75
325 326 5.398603 TTTTCAGACTGAGGTCAGATCTC 57.601 43.478 13.99 3.40 46.59 2.75
326 327 2.637947 TCAGACTGAGGTCAGATCTCG 58.362 52.381 13.99 3.93 46.59 4.04
327 328 2.237392 TCAGACTGAGGTCAGATCTCGA 59.763 50.000 13.99 9.46 46.59 4.04
328 329 3.118075 TCAGACTGAGGTCAGATCTCGAT 60.118 47.826 13.99 0.00 46.59 3.59
329 330 3.631686 CAGACTGAGGTCAGATCTCGATT 59.368 47.826 13.99 0.00 46.59 3.34
330 331 4.097741 CAGACTGAGGTCAGATCTCGATTT 59.902 45.833 13.99 0.00 46.59 2.17
331 332 4.709397 AGACTGAGGTCAGATCTCGATTTT 59.291 41.667 13.99 0.00 46.59 1.82
332 333 4.753233 ACTGAGGTCAGATCTCGATTTTG 58.247 43.478 13.99 0.00 46.59 2.44
333 334 4.221703 ACTGAGGTCAGATCTCGATTTTGT 59.778 41.667 13.99 0.00 46.59 2.83
334 335 5.152623 TGAGGTCAGATCTCGATTTTGTT 57.847 39.130 6.20 0.00 34.19 2.83
335 336 5.551233 TGAGGTCAGATCTCGATTTTGTTT 58.449 37.500 6.20 0.00 34.19 2.83
336 337 5.639506 TGAGGTCAGATCTCGATTTTGTTTC 59.360 40.000 6.20 0.00 34.19 2.78
337 338 5.551233 AGGTCAGATCTCGATTTTGTTTCA 58.449 37.500 0.00 0.00 0.00 2.69
338 339 5.409826 AGGTCAGATCTCGATTTTGTTTCAC 59.590 40.000 0.00 0.00 0.00 3.18
339 340 5.179368 GGTCAGATCTCGATTTTGTTTCACA 59.821 40.000 0.00 0.00 0.00 3.58
340 341 6.293407 GGTCAGATCTCGATTTTGTTTCACAA 60.293 38.462 0.00 0.00 36.11 3.33
341 342 7.132213 GTCAGATCTCGATTTTGTTTCACAAA 58.868 34.615 0.00 0.00 45.37 2.83
352 353 6.546972 TTTGTTTCACAAAAGGGTCAAAAC 57.453 33.333 0.00 0.00 44.23 2.43
353 354 5.215252 TGTTTCACAAAAGGGTCAAAACA 57.785 34.783 0.00 0.00 34.04 2.83
354 355 4.991687 TGTTTCACAAAAGGGTCAAAACAC 59.008 37.500 0.00 0.00 32.69 3.32
355 356 4.873746 TTCACAAAAGGGTCAAAACACA 57.126 36.364 0.00 0.00 0.00 3.72
356 357 4.873746 TCACAAAAGGGTCAAAACACAA 57.126 36.364 0.00 0.00 0.00 3.33
357 358 5.215252 TCACAAAAGGGTCAAAACACAAA 57.785 34.783 0.00 0.00 0.00 2.83
358 359 5.611374 TCACAAAAGGGTCAAAACACAAAA 58.389 33.333 0.00 0.00 0.00 2.44
359 360 6.234177 TCACAAAAGGGTCAAAACACAAAAT 58.766 32.000 0.00 0.00 0.00 1.82
360 361 6.712547 TCACAAAAGGGTCAAAACACAAAATT 59.287 30.769 0.00 0.00 0.00 1.82
361 362 7.229506 TCACAAAAGGGTCAAAACACAAAATTT 59.770 29.630 0.00 0.00 0.00 1.82
362 363 7.864882 CACAAAAGGGTCAAAACACAAAATTTT 59.135 29.630 0.00 0.00 0.00 1.82
363 364 7.864882 ACAAAAGGGTCAAAACACAAAATTTTG 59.135 29.630 25.73 25.73 44.74 2.44
364 365 5.559427 AGGGTCAAAACACAAAATTTTGC 57.441 34.783 26.94 10.69 43.62 3.68
365 366 4.397730 AGGGTCAAAACACAAAATTTTGCC 59.602 37.500 26.94 17.70 43.62 4.52
366 367 4.338596 GGTCAAAACACAAAATTTTGCCG 58.661 39.130 26.94 20.88 43.62 5.69
367 368 3.783418 GTCAAAACACAAAATTTTGCCGC 59.217 39.130 26.94 8.39 43.62 6.53
368 369 3.436704 TCAAAACACAAAATTTTGCCGCA 59.563 34.783 26.94 5.78 43.62 5.69
369 370 3.397405 AAACACAAAATTTTGCCGCAC 57.603 38.095 26.94 0.00 41.79 5.34
370 371 2.307934 ACACAAAATTTTGCCGCACT 57.692 40.000 26.94 7.17 41.79 4.40
371 372 3.444703 ACACAAAATTTTGCCGCACTA 57.555 38.095 26.94 0.00 41.79 2.74
372 373 3.120041 ACACAAAATTTTGCCGCACTAC 58.880 40.909 26.94 0.00 41.79 2.73
373 374 3.119291 CACAAAATTTTGCCGCACTACA 58.881 40.909 26.94 0.00 41.79 2.74
378 379 0.817634 TTTTGCCGCACTACAGCACT 60.818 50.000 0.00 0.00 35.96 4.40
382 383 1.338674 TGCCGCACTACAGCACTAAAT 60.339 47.619 0.00 0.00 0.00 1.40
630 814 2.604686 AACAGAGAGAGGCGGCCA 60.605 61.111 23.09 0.00 0.00 5.36
633 817 2.132996 CAGAGAGAGGCGGCCAGAT 61.133 63.158 23.09 6.02 0.00 2.90
634 818 1.832167 AGAGAGAGGCGGCCAGATC 60.832 63.158 23.09 15.22 0.00 2.75
635 819 2.042537 AGAGAGGCGGCCAGATCA 60.043 61.111 23.09 0.00 0.00 2.92
636 820 1.459158 AGAGAGGCGGCCAGATCAT 60.459 57.895 23.09 0.00 0.00 2.45
637 821 1.005156 GAGAGGCGGCCAGATCATC 60.005 63.158 23.09 8.75 0.00 2.92
639 823 0.178950 AGAGGCGGCCAGATCATCTA 60.179 55.000 23.09 0.00 0.00 1.98
640 824 0.037790 GAGGCGGCCAGATCATCTAC 60.038 60.000 23.09 0.00 0.00 2.59
641 825 0.760567 AGGCGGCCAGATCATCTACA 60.761 55.000 23.09 0.00 0.00 2.74
642 826 0.320247 GGCGGCCAGATCATCTACAG 60.320 60.000 15.62 0.00 0.00 2.74
666 853 4.451150 GCAGCATCCGTCGGTCCA 62.451 66.667 11.88 0.00 0.00 4.02
726 913 9.092876 GAGCCGATTCTGGAGATAATAAATAAG 57.907 37.037 0.00 0.00 0.00 1.73
818 1005 3.071023 AGAGAGAGACGACTGGGATAGAG 59.929 52.174 0.00 0.00 0.00 2.43
819 1006 3.042682 AGAGAGACGACTGGGATAGAGA 58.957 50.000 0.00 0.00 0.00 3.10
1042 1287 3.403558 GGCCTCCACCTCCACCTC 61.404 72.222 0.00 0.00 0.00 3.85
1043 1288 3.403558 GCCTCCACCTCCACCTCC 61.404 72.222 0.00 0.00 0.00 4.30
1044 1289 2.122729 CCTCCACCTCCACCTCCA 59.877 66.667 0.00 0.00 0.00 3.86
1045 1290 2.294078 CCTCCACCTCCACCTCCAC 61.294 68.421 0.00 0.00 0.00 4.02
1046 1291 2.203938 TCCACCTCCACCTCCACC 60.204 66.667 0.00 0.00 0.00 4.61
1047 1292 2.203998 CCACCTCCACCTCCACCT 60.204 66.667 0.00 0.00 0.00 4.00
1048 1293 2.294078 CCACCTCCACCTCCACCTC 61.294 68.421 0.00 0.00 0.00 3.85
1049 1294 2.122954 ACCTCCACCTCCACCTCC 59.877 66.667 0.00 0.00 0.00 4.30
1101 1361 1.559065 GGGTGCCTTGGCCTACTACA 61.559 60.000 3.32 0.00 0.00 2.74
1125 1385 3.417069 TGATTTGATCCGACTGTGGTT 57.583 42.857 0.00 0.00 0.00 3.67
1341 1622 0.613012 GGCCTTGCTTCACCAATCCT 60.613 55.000 0.00 0.00 0.00 3.24
1342 1623 0.813821 GCCTTGCTTCACCAATCCTC 59.186 55.000 0.00 0.00 0.00 3.71
1343 1624 1.467920 CCTTGCTTCACCAATCCTCC 58.532 55.000 0.00 0.00 0.00 4.30
1649 1942 8.484641 ACTATACACAAATCAAGACATGACTG 57.515 34.615 0.00 0.00 41.93 3.51
1804 2099 9.561069 AAGGATGGATGTTATGTTCATAGTTAC 57.439 33.333 0.00 0.00 0.00 2.50
2578 2897 1.133790 GGAAGCATCATGTGTGCCTTC 59.866 52.381 17.90 17.96 43.50 3.46
2604 3113 4.892934 AGACCTGTGATCTCAGATTAGGAC 59.107 45.833 23.17 11.82 37.61 3.85
2644 3153 1.765904 TGCCTAATCCCGCATGTCTTA 59.234 47.619 0.00 0.00 0.00 2.10
2688 3810 7.288810 TGGATATTTATCAGGGTTGCATTTC 57.711 36.000 0.00 0.00 34.40 2.17
2689 3811 6.267471 TGGATATTTATCAGGGTTGCATTTCC 59.733 38.462 0.00 0.00 34.40 3.13
2782 4154 7.169813 GGCTCAACAAGTAGGAAATTTTTCTTG 59.830 37.037 16.41 16.41 37.35 3.02
3208 4591 4.597507 AGGAAATAGTTGGTCCTTCAGTCA 59.402 41.667 0.00 0.00 38.71 3.41
3272 4661 6.769134 AGTTAACAACAAGCCTAAAAGTGT 57.231 33.333 8.61 0.00 0.00 3.55
3522 4926 0.526524 CGTTCTCGGATCAGGTCAGC 60.527 60.000 0.00 0.00 0.00 4.26
3837 5280 6.431234 GGAAAGAATAACATGACTTCACCACT 59.569 38.462 0.00 0.00 0.00 4.00
3932 5375 1.943968 GCAAGGACACTGAATACGCCA 60.944 52.381 0.00 0.00 0.00 5.69
4129 5579 7.098074 AGTAGGTGAAGGTAGTTAATTCTCG 57.902 40.000 0.00 0.00 0.00 4.04
4328 6410 0.396435 TGATCCACGCAGGTTCTTGT 59.604 50.000 7.00 0.00 37.08 3.16
4436 6552 4.747540 TTTGAATGTCTGTCAATGTCCG 57.252 40.909 0.00 0.00 35.03 4.79
4550 6666 8.958119 TCTAAATACACTTGTTGTTCACTCTT 57.042 30.769 0.00 0.00 39.91 2.85
4876 7070 3.568538 CATTTGCTTCCGCCTAATATGC 58.431 45.455 0.00 0.00 34.43 3.14
4991 7185 1.135527 TCTCCCACGGTATGCTTTACG 59.864 52.381 0.00 0.00 0.00 3.18
5167 7363 4.021229 TGCCGAGTTCTTAACTATCTGGA 58.979 43.478 0.00 0.00 43.03 3.86
5234 7430 6.704937 AGTAGTAACTGCCTACTTGTTGTTTC 59.295 38.462 0.00 0.00 41.78 2.78
5393 7722 3.663493 CGCTTACTACGAAAAACCACTGC 60.663 47.826 0.00 0.00 0.00 4.40
5450 7780 3.876274 AGACATCGTGAGTGCACTTAT 57.124 42.857 22.65 9.74 42.93 1.73
5538 7889 7.581213 ACAACTGGATAAAACATTCTTCACA 57.419 32.000 0.00 0.00 0.00 3.58
5613 7965 6.967199 GTGTGTAGAAGAAAAACTGGAGTTTG 59.033 38.462 5.55 0.00 46.47 2.93
5682 8036 1.892474 TGGAAAAGTACAGGCAATGGC 59.108 47.619 0.00 0.00 40.13 4.40
5907 8293 7.285629 TGACAAGTACATGGTTTGGTTTTATGA 59.714 33.333 2.78 0.00 0.00 2.15
5990 8379 6.094603 GCATGAATTATCTTCACAGTTCCAGT 59.905 38.462 0.00 0.00 0.00 4.00
6390 8795 6.625532 AAGCTCAATGGGACCATTTTAATT 57.374 33.333 13.69 5.02 43.32 1.40
6555 8969 7.123397 TGCAGGTCCAATTTTGCTATGTATTTA 59.877 33.333 2.13 0.00 37.45 1.40
7071 9552 3.898482 TCCGAGTGACATAGATCCTCAA 58.102 45.455 0.00 0.00 0.00 3.02
7125 9606 5.126707 CAGGTACATACTACTTCCTCCGTTT 59.873 44.000 0.00 0.00 0.00 3.60
7126 9607 5.718607 AGGTACATACTACTTCCTCCGTTTT 59.281 40.000 0.00 0.00 0.00 2.43
7127 9608 6.038985 GGTACATACTACTTCCTCCGTTTTC 58.961 44.000 0.00 0.00 0.00 2.29
7128 9609 5.082251 ACATACTACTTCCTCCGTTTTCC 57.918 43.478 0.00 0.00 0.00 3.13
7129 9610 4.776308 ACATACTACTTCCTCCGTTTTCCT 59.224 41.667 0.00 0.00 0.00 3.36
7130 9611 5.954150 ACATACTACTTCCTCCGTTTTCCTA 59.046 40.000 0.00 0.00 0.00 2.94
7131 9612 6.438425 ACATACTACTTCCTCCGTTTTCCTAA 59.562 38.462 0.00 0.00 0.00 2.69
7132 9613 5.813513 ACTACTTCCTCCGTTTTCCTAAA 57.186 39.130 0.00 0.00 0.00 1.85
7133 9614 6.370186 ACTACTTCCTCCGTTTTCCTAAAT 57.630 37.500 0.00 0.00 0.00 1.40
7134 9615 7.486407 ACTACTTCCTCCGTTTTCCTAAATA 57.514 36.000 0.00 0.00 0.00 1.40
7135 9616 8.087303 ACTACTTCCTCCGTTTTCCTAAATAT 57.913 34.615 0.00 0.00 0.00 1.28
7136 9617 8.546322 ACTACTTCCTCCGTTTTCCTAAATATT 58.454 33.333 0.00 0.00 0.00 1.28
7137 9618 9.392259 CTACTTCCTCCGTTTTCCTAAATATTT 57.608 33.333 5.89 5.89 0.00 1.40
7138 9619 8.051901 ACTTCCTCCGTTTTCCTAAATATTTG 57.948 34.615 11.05 1.40 0.00 2.32
7139 9620 7.668469 ACTTCCTCCGTTTTCCTAAATATTTGT 59.332 33.333 11.05 0.00 0.00 2.83
7140 9621 7.619964 TCCTCCGTTTTCCTAAATATTTGTC 57.380 36.000 11.05 0.00 0.00 3.18
7141 9622 7.399634 TCCTCCGTTTTCCTAAATATTTGTCT 58.600 34.615 11.05 0.00 0.00 3.41
7142 9623 7.886446 TCCTCCGTTTTCCTAAATATTTGTCTT 59.114 33.333 11.05 0.00 0.00 3.01
7143 9624 8.520351 CCTCCGTTTTCCTAAATATTTGTCTTT 58.480 33.333 11.05 0.00 0.00 2.52
7144 9625 9.556030 CTCCGTTTTCCTAAATATTTGTCTTTC 57.444 33.333 11.05 0.00 0.00 2.62
7145 9626 9.292195 TCCGTTTTCCTAAATATTTGTCTTTCT 57.708 29.630 11.05 0.00 0.00 2.52
7161 9642 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
7162 9643 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
7163 9644 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
7164 9645 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
7165 9646 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
7166 9647 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
7167 9648 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
7168 9649 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
7169 9650 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
7171 9652 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
7172 9653 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
7173 9654 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
7174 9655 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
7175 9656 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
7176 9657 6.509656 TTCAACAAGTGACTACATACGAAGT 58.490 36.000 0.00 0.00 39.84 3.01
7177 9658 7.650890 TTCAACAAGTGACTACATACGAAGTA 58.349 34.615 0.00 0.00 41.66 2.24
7178 9659 8.136800 TTCAACAAGTGACTACATACGAAGTAA 58.863 33.333 0.00 0.00 41.03 2.24
7195 9676 8.240883 ACGAAGTAAAATGAGTGAATCTACAC 57.759 34.615 0.00 0.00 41.94 2.90
7224 9708 7.773690 ACTAACAATAAACTGATTCCCGCTAAT 59.226 33.333 0.00 0.00 0.00 1.73
7487 9972 1.679898 GGAAGTCCTCCACCACAGG 59.320 63.158 0.00 0.00 44.67 4.00
7488 9973 0.836400 GGAAGTCCTCCACCACAGGA 60.836 60.000 0.00 0.00 44.67 3.86
7535 10039 5.774690 AGGTGGTTTTAAGCTTGATGAATCA 59.225 36.000 9.86 0.00 34.44 2.57
7558 10062 2.507992 CTGAAGCCCTGAGACGCG 60.508 66.667 3.53 3.53 0.00 6.01
7575 10079 1.792006 GCGGTTTCTTTTCGGAGAGA 58.208 50.000 0.00 0.00 38.43 3.10
7877 10384 3.882515 ATGACATGGAATTGGCATCACCA 60.883 43.478 8.91 8.91 41.64 4.17
7951 10458 4.082787 CGTTTGTGGCAGATTTTACCTGAT 60.083 41.667 0.00 0.00 33.65 2.90
8010 10517 0.667993 ATGTGGCGCATTTTATCCCG 59.332 50.000 10.83 0.00 33.14 5.14
8045 10552 5.257082 ACCATTTTGTTGTTGACTGTACC 57.743 39.130 0.00 0.00 0.00 3.34
8086 10593 1.036707 CTTCCCCGGTTTCTTTTGCA 58.963 50.000 0.00 0.00 0.00 4.08
8097 10604 5.925969 CGGTTTCTTTTGCATGGAATAAACT 59.074 36.000 21.30 0.00 0.00 2.66
8116 10623 3.948719 GACCGGCCAGACCCAACA 61.949 66.667 0.00 0.00 33.26 3.33
8212 10719 4.556233 CGCTCCGGAAGAATATTACATGA 58.444 43.478 5.23 0.00 0.00 3.07
8247 10754 7.595819 TCACAGAAAACTTTATGGAAACCAT 57.404 32.000 8.35 8.35 46.99 3.55
8298 10806 5.668558 AAACAAGATGTTAAGACGGTGAC 57.331 39.130 0.00 0.00 40.14 3.67
8499 11009 9.189156 CCTCTTTACATCCCATATTTCTTTGAA 57.811 33.333 0.00 0.00 0.00 2.69
8577 11087 6.173339 TCTGCATTTGGTTCTTAAGTCTAGG 58.827 40.000 1.63 0.00 0.00 3.02
8594 11104 7.741554 AGTCTAGGTATTATCATGATTCCCC 57.258 40.000 14.65 9.10 0.00 4.81
8602 11112 8.096414 GGTATTATCATGATTCCCCCATTTTTG 58.904 37.037 14.65 0.00 0.00 2.44
8611 11121 1.272037 CCCCCATTTTTGCAGGCAAAT 60.272 47.619 18.97 3.82 44.14 2.32
8647 11157 9.639601 CCTAAATTTAGTTTTTGGTCTTCCATC 57.360 33.333 20.99 0.00 43.91 3.51
8720 11238 6.183360 CCACAATATTTTGATTTTGGAGCACG 60.183 38.462 3.10 0.00 38.44 5.34
8732 11251 3.825160 GAGCACGCCTTGGTGTCCA 62.825 63.158 2.49 0.00 40.08 4.02
8745 11264 2.909662 TGGTGTCCAACATGGTCATCTA 59.090 45.455 8.07 0.00 37.53 1.98
8840 11359 1.632589 AAGCAGTGGAATCAAACCCC 58.367 50.000 0.00 0.00 0.00 4.95
8878 11399 9.498176 TTTTTCTCAACCCACTACTTCTATTAC 57.502 33.333 0.00 0.00 0.00 1.89
8959 11480 7.014711 TCCTAATGGCAGATGTAACTCTAAGAG 59.985 40.741 0.00 0.00 35.52 2.85
9000 11521 1.452108 GATTTGCAGGTCTCCCCCG 60.452 63.158 0.00 0.00 0.00 5.73
9020 11544 3.935828 CCGACAACCAACCAAACAATTTT 59.064 39.130 0.00 0.00 0.00 1.82
9052 11576 3.199880 AGGACATACTTATGCAGGTGC 57.800 47.619 0.00 0.00 37.19 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.040067 CAAACTGCTCAAAGTCGCCC 60.040 55.000 0.00 0.00 0.00 6.13
2 3 2.788535 GCAAACTGCTCAAAGTCGC 58.211 52.632 0.00 0.00 40.96 5.19
12 13 1.599542 ACGAAGAACAGAGCAAACTGC 59.400 47.619 0.00 0.00 45.46 4.40
13 14 2.032549 CCACGAAGAACAGAGCAAACTG 60.033 50.000 0.00 0.00 42.78 3.16
14 15 2.213499 CCACGAAGAACAGAGCAAACT 58.787 47.619 0.00 0.00 0.00 2.66
15 16 1.940613 ACCACGAAGAACAGAGCAAAC 59.059 47.619 0.00 0.00 0.00 2.93
16 17 1.939934 CACCACGAAGAACAGAGCAAA 59.060 47.619 0.00 0.00 0.00 3.68
17 18 1.581934 CACCACGAAGAACAGAGCAA 58.418 50.000 0.00 0.00 0.00 3.91
18 19 0.249868 CCACCACGAAGAACAGAGCA 60.250 55.000 0.00 0.00 0.00 4.26
19 20 0.951040 CCCACCACGAAGAACAGAGC 60.951 60.000 0.00 0.00 0.00 4.09
20 21 0.320771 CCCCACCACGAAGAACAGAG 60.321 60.000 0.00 0.00 0.00 3.35
21 22 1.752198 CCCCACCACGAAGAACAGA 59.248 57.895 0.00 0.00 0.00 3.41
22 23 1.302511 CCCCCACCACGAAGAACAG 60.303 63.158 0.00 0.00 0.00 3.16
23 24 2.833227 CCCCCACCACGAAGAACA 59.167 61.111 0.00 0.00 0.00 3.18
52 53 3.347590 CCCACCCCTTTCTCCCCC 61.348 72.222 0.00 0.00 0.00 5.40
53 54 3.347590 CCCCACCCCTTTCTCCCC 61.348 72.222 0.00 0.00 0.00 4.81
54 55 3.347590 CCCCCACCCCTTTCTCCC 61.348 72.222 0.00 0.00 0.00 4.30
55 56 4.062032 GCCCCCACCCCTTTCTCC 62.062 72.222 0.00 0.00 0.00 3.71
56 57 4.426313 CGCCCCCACCCCTTTCTC 62.426 72.222 0.00 0.00 0.00 2.87
76 77 1.003851 CATATATAAACCGCGGGCCG 58.996 55.000 31.76 24.35 0.00 6.13
77 78 2.004733 GACATATATAAACCGCGGGCC 58.995 52.381 31.76 0.00 0.00 5.80
78 79 2.004733 GGACATATATAAACCGCGGGC 58.995 52.381 31.76 0.00 0.00 6.13
79 80 2.997986 GTGGACATATATAAACCGCGGG 59.002 50.000 31.76 11.88 0.00 6.13
80 81 3.430895 GTGTGGACATATATAAACCGCGG 59.569 47.826 26.86 26.86 34.39 6.46
81 82 3.430895 GGTGTGGACATATATAAACCGCG 59.569 47.826 0.00 0.00 34.39 6.46
82 83 3.749609 GGGTGTGGACATATATAAACCGC 59.250 47.826 0.00 0.00 0.00 5.68
83 84 5.223449 AGGGTGTGGACATATATAAACCG 57.777 43.478 0.00 0.00 0.00 4.44
84 85 6.470278 GGTAGGGTGTGGACATATATAAACC 58.530 44.000 0.00 0.00 0.00 3.27
85 86 6.161381 CGGTAGGGTGTGGACATATATAAAC 58.839 44.000 0.00 0.00 0.00 2.01
86 87 5.840149 ACGGTAGGGTGTGGACATATATAAA 59.160 40.000 0.00 0.00 0.00 1.40
87 88 5.396485 ACGGTAGGGTGTGGACATATATAA 58.604 41.667 0.00 0.00 0.00 0.98
88 89 5.001833 ACGGTAGGGTGTGGACATATATA 57.998 43.478 0.00 0.00 0.00 0.86
89 90 3.830755 GACGGTAGGGTGTGGACATATAT 59.169 47.826 0.00 0.00 0.00 0.86
90 91 3.225104 GACGGTAGGGTGTGGACATATA 58.775 50.000 0.00 0.00 0.00 0.86
91 92 2.037144 GACGGTAGGGTGTGGACATAT 58.963 52.381 0.00 0.00 0.00 1.78
92 93 1.477553 GACGGTAGGGTGTGGACATA 58.522 55.000 0.00 0.00 0.00 2.29
93 94 1.601419 CGACGGTAGGGTGTGGACAT 61.601 60.000 0.00 0.00 0.00 3.06
94 95 2.270257 CGACGGTAGGGTGTGGACA 61.270 63.158 0.00 0.00 0.00 4.02
95 96 2.570181 CGACGGTAGGGTGTGGAC 59.430 66.667 0.00 0.00 0.00 4.02
96 97 2.677524 CCGACGGTAGGGTGTGGA 60.678 66.667 5.48 0.00 0.00 4.02
97 98 2.677524 TCCGACGGTAGGGTGTGG 60.678 66.667 14.79 0.00 0.00 4.17
98 99 1.676635 TCTCCGACGGTAGGGTGTG 60.677 63.158 14.79 0.00 0.00 3.82
99 100 1.676967 GTCTCCGACGGTAGGGTGT 60.677 63.158 14.79 0.00 0.00 4.16
100 101 1.375098 GAGTCTCCGACGGTAGGGTG 61.375 65.000 14.79 0.96 37.67 4.61
101 102 1.077858 GAGTCTCCGACGGTAGGGT 60.078 63.158 14.79 1.55 37.67 4.34
102 103 1.096386 CAGAGTCTCCGACGGTAGGG 61.096 65.000 14.79 3.38 37.67 3.53
103 104 1.096386 CCAGAGTCTCCGACGGTAGG 61.096 65.000 14.79 0.20 37.67 3.18
104 105 1.716826 GCCAGAGTCTCCGACGGTAG 61.717 65.000 14.79 10.16 37.67 3.18
105 106 1.748122 GCCAGAGTCTCCGACGGTA 60.748 63.158 14.79 0.13 37.67 4.02
106 107 3.063084 GCCAGAGTCTCCGACGGT 61.063 66.667 14.79 0.00 37.67 4.83
107 108 4.180946 CGCCAGAGTCTCCGACGG 62.181 72.222 7.84 7.84 37.67 4.79
108 109 4.180946 CCGCCAGAGTCTCCGACG 62.181 72.222 10.47 3.18 37.67 5.12
109 110 1.716826 CTACCGCCAGAGTCTCCGAC 61.717 65.000 10.47 0.00 0.00 4.79
110 111 1.451567 CTACCGCCAGAGTCTCCGA 60.452 63.158 10.47 0.00 0.00 4.55
111 112 2.482333 CCTACCGCCAGAGTCTCCG 61.482 68.421 0.00 0.00 0.00 4.63
112 113 0.971447 AACCTACCGCCAGAGTCTCC 60.971 60.000 0.00 0.00 0.00 3.71
113 114 0.456628 GAACCTACCGCCAGAGTCTC 59.543 60.000 0.00 0.00 0.00 3.36
114 115 0.251653 TGAACCTACCGCCAGAGTCT 60.252 55.000 0.00 0.00 0.00 3.24
115 116 0.173708 CTGAACCTACCGCCAGAGTC 59.826 60.000 0.00 0.00 0.00 3.36
116 117 0.251653 TCTGAACCTACCGCCAGAGT 60.252 55.000 0.00 0.00 32.51 3.24
117 118 0.173708 GTCTGAACCTACCGCCAGAG 59.826 60.000 0.00 0.00 36.46 3.35
118 119 0.541063 TGTCTGAACCTACCGCCAGA 60.541 55.000 0.00 0.00 33.72 3.86
119 120 0.320374 TTGTCTGAACCTACCGCCAG 59.680 55.000 0.00 0.00 0.00 4.85
120 121 0.034337 GTTGTCTGAACCTACCGCCA 59.966 55.000 0.00 0.00 0.00 5.69
121 122 0.672711 GGTTGTCTGAACCTACCGCC 60.673 60.000 0.00 0.00 37.34 6.13
122 123 2.836944 GGTTGTCTGAACCTACCGC 58.163 57.895 0.00 0.00 37.34 5.68
128 129 1.668047 CGACGGTAGGTTGTCTGAACC 60.668 57.143 0.00 0.00 40.58 3.62
129 130 1.668047 CCGACGGTAGGTTGTCTGAAC 60.668 57.143 5.48 0.00 32.93 3.18
130 131 0.599558 CCGACGGTAGGTTGTCTGAA 59.400 55.000 5.48 0.00 32.93 3.02
131 132 1.246056 CCCGACGGTAGGTTGTCTGA 61.246 60.000 13.94 0.00 32.93 3.27
132 133 1.214589 CCCGACGGTAGGTTGTCTG 59.785 63.158 13.94 0.00 32.93 3.51
133 134 2.643232 GCCCGACGGTAGGTTGTCT 61.643 63.158 13.94 0.00 32.93 3.41
134 135 2.125793 GCCCGACGGTAGGTTGTC 60.126 66.667 13.94 0.00 0.00 3.18
135 136 4.060038 CGCCCGACGGTAGGTTGT 62.060 66.667 13.94 0.00 38.44 3.32
156 157 4.789075 CCGTCACACCTACCGCCG 62.789 72.222 0.00 0.00 0.00 6.46
157 158 3.352338 CTCCGTCACACCTACCGCC 62.352 68.421 0.00 0.00 0.00 6.13
158 159 2.181021 CTCCGTCACACCTACCGC 59.819 66.667 0.00 0.00 0.00 5.68
159 160 2.707849 CCCTCCGTCACACCTACCG 61.708 68.421 0.00 0.00 0.00 4.02
160 161 2.356780 CCCCTCCGTCACACCTACC 61.357 68.421 0.00 0.00 0.00 3.18
161 162 2.356780 CCCCCTCCGTCACACCTAC 61.357 68.421 0.00 0.00 0.00 3.18
162 163 2.038329 CCCCCTCCGTCACACCTA 59.962 66.667 0.00 0.00 0.00 3.08
163 164 3.477956 TTCCCCCTCCGTCACACCT 62.478 63.158 0.00 0.00 0.00 4.00
164 165 2.926242 TTCCCCCTCCGTCACACC 60.926 66.667 0.00 0.00 0.00 4.16
165 166 2.346365 GTTCCCCCTCCGTCACAC 59.654 66.667 0.00 0.00 0.00 3.82
166 167 3.307906 CGTTCCCCCTCCGTCACA 61.308 66.667 0.00 0.00 0.00 3.58
167 168 4.078516 CCGTTCCCCCTCCGTCAC 62.079 72.222 0.00 0.00 0.00 3.67
176 177 3.692370 ATAACTGCCGCCGTTCCCC 62.692 63.158 3.18 0.00 0.00 4.81
177 178 2.124860 ATAACTGCCGCCGTTCCC 60.125 61.111 3.18 0.00 0.00 3.97
178 179 2.522638 CGATAACTGCCGCCGTTCC 61.523 63.158 3.18 0.00 0.00 3.62
179 180 2.522638 CCGATAACTGCCGCCGTTC 61.523 63.158 3.18 0.00 0.00 3.95
180 181 2.510691 CCGATAACTGCCGCCGTT 60.511 61.111 5.47 5.47 0.00 4.44
185 186 3.630148 CAGCGCCGATAACTGCCG 61.630 66.667 2.29 0.00 0.00 5.69
186 187 2.202878 TCAGCGCCGATAACTGCC 60.203 61.111 2.29 0.00 0.00 4.85
187 188 2.860628 CGTCAGCGCCGATAACTGC 61.861 63.158 2.29 0.00 0.00 4.40
188 189 1.516386 ACGTCAGCGCCGATAACTG 60.516 57.895 11.49 0.00 42.83 3.16
189 190 1.516386 CACGTCAGCGCCGATAACT 60.516 57.895 11.49 0.00 42.83 2.24
190 191 2.514013 CCACGTCAGCGCCGATAAC 61.514 63.158 11.49 0.00 42.83 1.89
191 192 2.202690 CCACGTCAGCGCCGATAA 60.203 61.111 11.49 0.00 42.83 1.75
192 193 2.215465 TTTCCACGTCAGCGCCGATA 62.215 55.000 11.49 0.00 42.83 2.92
193 194 3.583276 TTTCCACGTCAGCGCCGAT 62.583 57.895 11.49 0.00 42.83 4.18
194 195 3.793775 TTTTCCACGTCAGCGCCGA 62.794 57.895 11.49 0.00 42.83 5.54
195 196 2.182614 ATTTTTCCACGTCAGCGCCG 62.183 55.000 2.29 2.67 42.83 6.46
196 197 0.039527 AATTTTTCCACGTCAGCGCC 60.040 50.000 2.29 0.00 42.83 6.53
197 198 1.451651 CAAATTTTTCCACGTCAGCGC 59.548 47.619 0.00 0.00 42.83 5.92
198 199 1.451651 GCAAATTTTTCCACGTCAGCG 59.548 47.619 0.00 0.00 44.93 5.18
199 200 2.742774 AGCAAATTTTTCCACGTCAGC 58.257 42.857 0.00 0.00 0.00 4.26
200 201 4.226761 GGTAGCAAATTTTTCCACGTCAG 58.773 43.478 0.00 0.00 0.00 3.51
201 202 3.304123 CGGTAGCAAATTTTTCCACGTCA 60.304 43.478 0.00 0.00 0.00 4.35
202 203 3.231160 CGGTAGCAAATTTTTCCACGTC 58.769 45.455 0.00 0.00 0.00 4.34
203 204 2.606065 GCGGTAGCAAATTTTTCCACGT 60.606 45.455 0.00 0.00 44.35 4.49
204 205 1.982913 GCGGTAGCAAATTTTTCCACG 59.017 47.619 0.00 0.00 44.35 4.94
228 229 3.874501 TATAGCCTACCGCCGAGCACT 62.875 57.143 0.00 0.00 38.78 4.40
229 230 1.521450 TATAGCCTACCGCCGAGCAC 61.521 60.000 0.00 0.00 38.78 4.40
230 231 1.228337 TATAGCCTACCGCCGAGCA 60.228 57.895 0.00 0.00 38.78 4.26
231 232 1.212229 GTATAGCCTACCGCCGAGC 59.788 63.158 0.00 0.00 38.78 5.03
232 233 0.952497 TCGTATAGCCTACCGCCGAG 60.952 60.000 0.00 0.00 38.78 4.63
233 234 0.321919 ATCGTATAGCCTACCGCCGA 60.322 55.000 0.00 0.00 38.78 5.54
234 235 0.098376 GATCGTATAGCCTACCGCCG 59.902 60.000 0.00 0.00 38.78 6.46
235 236 0.455005 GGATCGTATAGCCTACCGCC 59.545 60.000 0.00 0.00 38.78 6.13
236 237 1.461559 AGGATCGTATAGCCTACCGC 58.538 55.000 0.00 0.00 44.19 5.68
240 241 2.636830 GCGGTAGGATCGTATAGCCTA 58.363 52.381 11.58 0.00 44.19 3.93
242 243 0.455005 GGCGGTAGGATCGTATAGCC 59.545 60.000 20.52 20.52 36.32 3.93
243 244 0.098376 CGGCGGTAGGATCGTATAGC 59.902 60.000 0.00 13.31 0.00 2.97
244 245 0.731417 CCGGCGGTAGGATCGTATAG 59.269 60.000 19.97 0.00 0.00 1.31
245 246 0.677731 CCCGGCGGTAGGATCGTATA 60.678 60.000 26.32 0.00 0.00 1.47
246 247 1.975407 CCCGGCGGTAGGATCGTAT 60.975 63.158 26.32 0.00 0.00 3.06
247 248 2.595463 CCCGGCGGTAGGATCGTA 60.595 66.667 26.32 0.00 0.00 3.43
254 255 4.530857 CAAGAGGCCCGGCGGTAG 62.531 72.222 26.32 11.84 0.00 3.18
266 267 3.084786 CCCTTTTGCCTACCTTCAAGAG 58.915 50.000 0.00 0.00 0.00 2.85
267 268 2.445525 ACCCTTTTGCCTACCTTCAAGA 59.554 45.455 0.00 0.00 0.00 3.02
268 269 2.876581 ACCCTTTTGCCTACCTTCAAG 58.123 47.619 0.00 0.00 0.00 3.02
269 270 3.322191 AACCCTTTTGCCTACCTTCAA 57.678 42.857 0.00 0.00 0.00 2.69
270 271 4.456662 TTAACCCTTTTGCCTACCTTCA 57.543 40.909 0.00 0.00 0.00 3.02
271 272 5.105473 GGATTTAACCCTTTTGCCTACCTTC 60.105 44.000 0.00 0.00 0.00 3.46
272 273 4.775780 GGATTTAACCCTTTTGCCTACCTT 59.224 41.667 0.00 0.00 0.00 3.50
273 274 4.350245 GGATTTAACCCTTTTGCCTACCT 58.650 43.478 0.00 0.00 0.00 3.08
274 275 3.449737 GGGATTTAACCCTTTTGCCTACC 59.550 47.826 0.00 0.00 45.90 3.18
275 276 4.730949 GGGATTTAACCCTTTTGCCTAC 57.269 45.455 0.00 0.00 45.90 3.18
285 286 7.919091 GTCTGAAAATATTTCGGGATTTAACCC 59.081 37.037 0.10 0.00 45.92 4.11
286 287 8.683615 AGTCTGAAAATATTTCGGGATTTAACC 58.316 33.333 0.10 0.00 0.00 2.85
287 288 9.503427 CAGTCTGAAAATATTTCGGGATTTAAC 57.497 33.333 0.10 2.58 0.00 2.01
288 289 9.456147 TCAGTCTGAAAATATTTCGGGATTTAA 57.544 29.630 0.00 0.00 0.00 1.52
289 290 9.109393 CTCAGTCTGAAAATATTTCGGGATTTA 57.891 33.333 3.67 0.00 0.00 1.40
290 291 7.067494 CCTCAGTCTGAAAATATTTCGGGATTT 59.933 37.037 3.67 0.00 0.00 2.17
291 292 6.543831 CCTCAGTCTGAAAATATTTCGGGATT 59.456 38.462 3.67 1.53 0.00 3.01
292 293 6.058183 CCTCAGTCTGAAAATATTTCGGGAT 58.942 40.000 3.67 0.00 0.00 3.85
293 294 5.045869 ACCTCAGTCTGAAAATATTTCGGGA 60.046 40.000 3.67 3.85 0.00 5.14
294 295 5.186198 ACCTCAGTCTGAAAATATTTCGGG 58.814 41.667 3.67 0.26 0.00 5.14
295 296 5.874810 TGACCTCAGTCTGAAAATATTTCGG 59.125 40.000 3.67 5.49 43.91 4.30
296 297 6.813649 TCTGACCTCAGTCTGAAAATATTTCG 59.186 38.462 3.67 0.00 44.95 3.46
307 308 2.637947 TCGAGATCTGACCTCAGTCTG 58.362 52.381 0.00 0.00 43.91 3.51
308 309 3.576078 ATCGAGATCTGACCTCAGTCT 57.424 47.619 0.00 5.02 43.91 3.24
309 310 4.647424 AAATCGAGATCTGACCTCAGTC 57.353 45.455 0.00 0.69 44.12 3.51
310 311 4.221703 ACAAAATCGAGATCTGACCTCAGT 59.778 41.667 0.00 0.00 44.12 3.41
311 312 4.753233 ACAAAATCGAGATCTGACCTCAG 58.247 43.478 0.00 0.00 45.08 3.35
312 313 4.808414 ACAAAATCGAGATCTGACCTCA 57.192 40.909 0.00 0.00 0.00 3.86
313 314 5.639506 TGAAACAAAATCGAGATCTGACCTC 59.360 40.000 0.00 0.00 0.00 3.85
314 315 5.409826 GTGAAACAAAATCGAGATCTGACCT 59.590 40.000 0.00 0.00 36.32 3.85
315 316 5.622378 GTGAAACAAAATCGAGATCTGACC 58.378 41.667 0.00 0.00 36.32 4.02
332 333 4.991687 TGTGTTTTGACCCTTTTGTGAAAC 59.008 37.500 0.00 0.00 37.35 2.78
333 334 5.215252 TGTGTTTTGACCCTTTTGTGAAA 57.785 34.783 0.00 0.00 0.00 2.69
334 335 4.873746 TGTGTTTTGACCCTTTTGTGAA 57.126 36.364 0.00 0.00 0.00 3.18
335 336 4.873746 TTGTGTTTTGACCCTTTTGTGA 57.126 36.364 0.00 0.00 0.00 3.58
336 337 5.931441 TTTTGTGTTTTGACCCTTTTGTG 57.069 34.783 0.00 0.00 0.00 3.33
337 338 7.517614 AAATTTTGTGTTTTGACCCTTTTGT 57.482 28.000 0.00 0.00 0.00 2.83
338 339 7.148836 GCAAAATTTTGTGTTTTGACCCTTTTG 60.149 33.333 27.13 2.54 45.02 2.44
339 340 6.865726 GCAAAATTTTGTGTTTTGACCCTTTT 59.134 30.769 27.13 0.00 45.02 2.27
340 341 6.385843 GCAAAATTTTGTGTTTTGACCCTTT 58.614 32.000 27.13 0.00 45.02 3.11
341 342 5.105957 GGCAAAATTTTGTGTTTTGACCCTT 60.106 36.000 27.13 0.00 44.81 3.95
342 343 4.397730 GGCAAAATTTTGTGTTTTGACCCT 59.602 37.500 27.13 0.00 44.81 4.34
343 344 4.667262 GGCAAAATTTTGTGTTTTGACCC 58.333 39.130 27.13 15.12 44.81 4.46
344 345 4.338596 CGGCAAAATTTTGTGTTTTGACC 58.661 39.130 27.13 17.48 46.77 4.02
345 346 3.783418 GCGGCAAAATTTTGTGTTTTGAC 59.217 39.130 27.13 11.33 46.27 3.18
346 347 3.436704 TGCGGCAAAATTTTGTGTTTTGA 59.563 34.783 27.13 7.21 45.02 2.69
347 348 3.541523 GTGCGGCAAAATTTTGTGTTTTG 59.458 39.130 27.13 14.19 45.01 2.44
348 349 3.438434 AGTGCGGCAAAATTTTGTGTTTT 59.562 34.783 27.13 10.31 40.24 2.43
349 350 3.006247 AGTGCGGCAAAATTTTGTGTTT 58.994 36.364 27.13 9.85 40.24 2.83
350 351 2.626840 AGTGCGGCAAAATTTTGTGTT 58.373 38.095 27.13 11.03 40.24 3.32
351 352 2.307934 AGTGCGGCAAAATTTTGTGT 57.692 40.000 27.13 7.60 40.24 3.72
352 353 3.119291 TGTAGTGCGGCAAAATTTTGTG 58.881 40.909 27.13 21.32 40.24 3.33
353 354 3.380142 CTGTAGTGCGGCAAAATTTTGT 58.620 40.909 27.13 12.37 40.24 2.83
364 365 2.348666 GTGATTTAGTGCTGTAGTGCGG 59.651 50.000 0.00 0.00 35.36 5.69
365 366 2.993220 TGTGATTTAGTGCTGTAGTGCG 59.007 45.455 0.00 0.00 35.36 5.34
366 367 3.181516 GCTGTGATTTAGTGCTGTAGTGC 60.182 47.826 0.00 0.00 0.00 4.40
367 368 3.372206 GGCTGTGATTTAGTGCTGTAGTG 59.628 47.826 0.00 0.00 0.00 2.74
368 369 3.600388 GGCTGTGATTTAGTGCTGTAGT 58.400 45.455 0.00 0.00 0.00 2.73
369 370 2.939103 GGGCTGTGATTTAGTGCTGTAG 59.061 50.000 0.00 0.00 0.00 2.74
370 371 2.304470 TGGGCTGTGATTTAGTGCTGTA 59.696 45.455 0.00 0.00 0.00 2.74
371 372 1.073763 TGGGCTGTGATTTAGTGCTGT 59.926 47.619 0.00 0.00 0.00 4.40
372 373 1.470098 GTGGGCTGTGATTTAGTGCTG 59.530 52.381 0.00 0.00 0.00 4.41
373 374 1.073763 TGTGGGCTGTGATTTAGTGCT 59.926 47.619 0.00 0.00 0.00 4.40
378 379 3.519107 TCTCATCTGTGGGCTGTGATTTA 59.481 43.478 0.00 0.00 0.00 1.40
382 383 1.208776 CATCTCATCTGTGGGCTGTGA 59.791 52.381 0.00 0.00 0.00 3.58
630 814 4.458989 GCTGCTAGCTACTGTAGATGATCT 59.541 45.833 18.64 0.00 38.45 2.75
633 817 3.555966 TGCTGCTAGCTACTGTAGATGA 58.444 45.455 18.64 1.82 42.97 2.92
634 818 3.998099 TGCTGCTAGCTACTGTAGATG 57.002 47.619 18.64 8.28 42.97 2.90
635 819 3.509575 GGATGCTGCTAGCTACTGTAGAT 59.490 47.826 18.64 14.70 42.97 1.98
636 820 2.887783 GGATGCTGCTAGCTACTGTAGA 59.112 50.000 18.64 0.00 42.97 2.59
637 821 2.351253 CGGATGCTGCTAGCTACTGTAG 60.351 54.545 17.23 10.48 42.97 2.74
639 823 0.387202 CGGATGCTGCTAGCTACTGT 59.613 55.000 17.23 0.00 42.97 3.55
640 824 0.387202 ACGGATGCTGCTAGCTACTG 59.613 55.000 17.23 9.77 42.97 2.74
641 825 0.671251 GACGGATGCTGCTAGCTACT 59.329 55.000 17.23 0.00 42.97 2.57
642 826 0.661780 CGACGGATGCTGCTAGCTAC 60.662 60.000 17.23 8.44 42.97 3.58
666 853 6.757897 TGTCTGAGTTGAATTTTGTTCTGT 57.242 33.333 0.00 0.00 0.00 3.41
733 920 8.749354 GGACCTGTTCTTCCACAATTATTTAAT 58.251 33.333 0.00 0.00 0.00 1.40
734 921 7.726291 TGGACCTGTTCTTCCACAATTATTTAA 59.274 33.333 0.00 0.00 36.96 1.52
1038 1283 1.464198 AAGGCAAGGAGGTGGAGGT 60.464 57.895 0.00 0.00 0.00 3.85
1039 1284 1.001641 CAAGGCAAGGAGGTGGAGG 60.002 63.158 0.00 0.00 0.00 4.30
1040 1285 1.676967 GCAAGGCAAGGAGGTGGAG 60.677 63.158 0.00 0.00 0.00 3.86
1041 1286 1.719063 AAGCAAGGCAAGGAGGTGGA 61.719 55.000 0.00 0.00 0.00 4.02
1042 1287 1.228675 AAGCAAGGCAAGGAGGTGG 60.229 57.895 0.00 0.00 0.00 4.61
1043 1288 1.962144 CAAGCAAGGCAAGGAGGTG 59.038 57.895 0.00 0.00 0.00 4.00
1044 1289 1.905354 GCAAGCAAGGCAAGGAGGT 60.905 57.895 0.00 0.00 0.00 3.85
1045 1290 1.904865 TGCAAGCAAGGCAAGGAGG 60.905 57.895 0.00 0.00 38.54 4.30
1046 1291 1.288127 GTGCAAGCAAGGCAAGGAG 59.712 57.895 0.00 0.00 43.91 3.69
1047 1292 1.042003 TTGTGCAAGCAAGGCAAGGA 61.042 50.000 0.00 0.00 43.91 3.36
1048 1293 0.877213 GTTGTGCAAGCAAGGCAAGG 60.877 55.000 0.00 0.00 43.91 3.61
1049 1294 0.103572 AGTTGTGCAAGCAAGGCAAG 59.896 50.000 0.00 0.00 43.91 4.01
1101 1361 4.766891 ACCACAGTCGGATCAAATCAAATT 59.233 37.500 0.00 0.00 0.00 1.82
1125 1385 4.697756 CGCCGGCCAAGAGACCAA 62.698 66.667 23.46 0.00 0.00 3.67
1286 1558 2.262915 GACGTAGCCTGCTGCAGT 59.737 61.111 26.41 12.91 44.83 4.40
1341 1622 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1342 1623 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1343 1624 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1804 2099 0.742505 TCGGCCTTGGACGTGTATAG 59.257 55.000 15.02 0.00 0.00 1.31
2146 2441 6.125029 ACATTTACATCTAGAATGCCAAGCT 58.875 36.000 0.00 0.00 34.86 3.74
2546 2857 7.092079 CACATGATGCTTCCAGATTTGTTTAA 58.908 34.615 0.00 0.00 0.00 1.52
2578 2897 6.775142 TCCTAATCTGAGATCACAGGTCTTAG 59.225 42.308 18.49 18.93 38.31 2.18
2644 3153 6.590656 TCCATCATTATTACAAAGGTCCCT 57.409 37.500 0.00 0.00 0.00 4.20
2700 3822 4.282950 ACATGCATCACGATAAGCAAAG 57.717 40.909 0.00 0.00 40.76 2.77
3522 4926 1.056103 CTGTTCGTCGCAACTCTGAG 58.944 55.000 2.45 2.45 0.00 3.35
3837 5280 7.161404 AGTGTTCTCTTGCTTATCATGTAACA 58.839 34.615 0.00 0.00 31.49 2.41
3932 5375 2.243221 AGACCTCATATTTGCCTGCCTT 59.757 45.455 0.00 0.00 0.00 4.35
4129 5579 2.881111 AAGGAGAACCAGGGTAAAGC 57.119 50.000 0.00 0.00 38.94 3.51
4277 6339 8.503458 AACATAGAGGAAATGAGTGATTTCTG 57.497 34.615 13.70 7.20 46.48 3.02
4328 6410 2.746904 CAAAGCATGATACACCGTTCCA 59.253 45.455 0.00 0.00 0.00 3.53
4334 6416 4.036734 CCATACCACAAAGCATGATACACC 59.963 45.833 0.00 0.00 0.00 4.16
4426 6542 2.930040 CACATCCTACACGGACATTGAC 59.070 50.000 0.00 0.00 46.80 3.18
4436 6552 4.324267 ACTTTAACTGCCACATCCTACAC 58.676 43.478 0.00 0.00 0.00 2.90
4876 7070 2.740981 GCTTCTTCATCAGTGACACCTG 59.259 50.000 0.84 0.47 33.11 4.00
4991 7185 6.407202 ACCAACAATAAGACATGTAGGAGAC 58.593 40.000 0.00 0.00 0.00 3.36
5234 7430 0.951040 GCCGACTTGAGGAACAGTGG 60.951 60.000 0.00 0.00 0.00 4.00
5293 7489 6.391227 AGAAATATTGGCCCGAATGTTAAG 57.609 37.500 0.00 0.00 0.00 1.85
5393 7722 1.453155 CCGTCTTGGATCCAACTTGG 58.547 55.000 23.63 19.07 42.00 3.61
5450 7780 8.988934 CATTTACTAGAAACTAGCTGTTCAACA 58.011 33.333 0.00 0.00 38.03 3.33
5538 7889 8.571461 TTCAATAAATCTCTGAACTTCTGCAT 57.429 30.769 0.00 0.00 0.00 3.96
5613 7965 4.041198 TGGCCTACTATTGGGTACATAAGC 59.959 45.833 3.32 0.00 0.00 3.09
5682 8036 4.180817 TGTTAGATGTAAGGTGCATGACG 58.819 43.478 0.00 0.00 0.00 4.35
5907 8293 8.970859 AAGATCTCCATGACGATAAAATCTTT 57.029 30.769 0.00 0.00 29.17 2.52
5990 8379 0.038067 CACGATGTACAACGGTGGGA 60.038 55.000 26.27 0.00 0.00 4.37
6102 8493 6.223120 GCAACCTAATTGAACCAAGTGAATT 58.777 36.000 0.00 0.00 41.23 2.17
6390 8795 4.129380 CAGATTGCGGGAACATCTATTGA 58.871 43.478 0.00 0.00 0.00 2.57
6555 8969 7.681939 AATCGTGTGAATACCTAAACAACAT 57.318 32.000 0.00 0.00 0.00 2.71
6901 9352 6.663093 TGCAATGGTGGTTATTTCACTTCTAT 59.337 34.615 0.00 0.00 35.61 1.98
7071 9552 4.180377 ACTCTCAATCATTGATGCCCAT 57.820 40.909 0.00 0.00 39.30 4.00
7135 9616 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
7136 9617 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
7137 9618 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
7138 9619 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
7139 9620 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
7140 9621 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
7141 9622 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
7142 9623 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
7143 9624 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
7144 9625 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
7145 9626 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
7146 9627 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
7147 9628 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
7148 9629 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
7149 9630 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
7150 9631 7.656137 ACTTCGTATGTAGTCACTTGTTGAAAT 59.344 33.333 0.00 0.00 35.39 2.17
7151 9632 6.982141 ACTTCGTATGTAGTCACTTGTTGAAA 59.018 34.615 0.00 0.00 35.39 2.69
7152 9633 6.509656 ACTTCGTATGTAGTCACTTGTTGAA 58.490 36.000 0.00 0.00 35.39 2.69
7153 9634 6.080648 ACTTCGTATGTAGTCACTTGTTGA 57.919 37.500 0.00 0.00 0.00 3.18
7154 9635 7.862741 TTACTTCGTATGTAGTCACTTGTTG 57.137 36.000 0.00 0.00 0.00 3.33
7155 9636 8.876275 TTTTACTTCGTATGTAGTCACTTGTT 57.124 30.769 0.00 0.00 0.00 2.83
7156 9637 8.922676 CATTTTACTTCGTATGTAGTCACTTGT 58.077 33.333 0.00 0.00 0.00 3.16
7157 9638 9.135843 TCATTTTACTTCGTATGTAGTCACTTG 57.864 33.333 0.00 0.00 0.00 3.16
7158 9639 9.355215 CTCATTTTACTTCGTATGTAGTCACTT 57.645 33.333 0.00 0.00 0.00 3.16
7159 9640 8.521176 ACTCATTTTACTTCGTATGTAGTCACT 58.479 33.333 0.00 0.00 0.00 3.41
7160 9641 8.584600 CACTCATTTTACTTCGTATGTAGTCAC 58.415 37.037 0.00 0.00 0.00 3.67
7161 9642 8.517056 TCACTCATTTTACTTCGTATGTAGTCA 58.483 33.333 0.00 0.00 0.00 3.41
7162 9643 8.906636 TCACTCATTTTACTTCGTATGTAGTC 57.093 34.615 0.00 0.00 0.00 2.59
7163 9644 9.871238 ATTCACTCATTTTACTTCGTATGTAGT 57.129 29.630 0.00 0.00 0.00 2.73
7169 9650 9.350357 GTGTAGATTCACTCATTTTACTTCGTA 57.650 33.333 0.00 0.00 35.68 3.43
7170 9651 8.088981 AGTGTAGATTCACTCATTTTACTTCGT 58.911 33.333 0.00 0.00 44.07 3.85
7171 9652 8.467402 AGTGTAGATTCACTCATTTTACTTCG 57.533 34.615 0.00 0.00 44.07 3.79
7192 9673 9.227777 GGGAATCAGTTTATTGTTAGTAAGTGT 57.772 33.333 0.00 0.00 0.00 3.55
7193 9674 8.388103 CGGGAATCAGTTTATTGTTAGTAAGTG 58.612 37.037 0.00 0.00 0.00 3.16
7194 9675 7.065443 GCGGGAATCAGTTTATTGTTAGTAAGT 59.935 37.037 0.00 0.00 0.00 2.24
7195 9676 7.280205 AGCGGGAATCAGTTTATTGTTAGTAAG 59.720 37.037 0.00 0.00 0.00 2.34
7196 9677 7.107542 AGCGGGAATCAGTTTATTGTTAGTAA 58.892 34.615 0.00 0.00 0.00 2.24
7211 9695 3.307691 GGATGATGGATTAGCGGGAATCA 60.308 47.826 10.08 2.89 37.53 2.57
7224 9708 3.055167 TGCTCGAAGAAAAGGATGATGGA 60.055 43.478 0.00 0.00 34.09 3.41
7405 9889 4.160065 TGGCAAATACACAATCCATCCAAG 59.840 41.667 0.00 0.00 0.00 3.61
7452 9937 1.041447 TCCTCGAACCTTCCGGATCC 61.041 60.000 4.15 0.00 0.00 3.36
7481 9966 2.417924 CCTTGTCTCGATTCTCCTGTGG 60.418 54.545 0.00 0.00 0.00 4.17
7482 9967 2.232452 ACCTTGTCTCGATTCTCCTGTG 59.768 50.000 0.00 0.00 0.00 3.66
7483 9968 2.232452 CACCTTGTCTCGATTCTCCTGT 59.768 50.000 0.00 0.00 0.00 4.00
7484 9969 2.886081 CACCTTGTCTCGATTCTCCTG 58.114 52.381 0.00 0.00 0.00 3.86
7485 9970 1.205893 GCACCTTGTCTCGATTCTCCT 59.794 52.381 0.00 0.00 0.00 3.69
7486 9971 1.646189 GCACCTTGTCTCGATTCTCC 58.354 55.000 0.00 0.00 0.00 3.71
7487 9972 1.205893 AGGCACCTTGTCTCGATTCTC 59.794 52.381 0.00 0.00 0.00 2.87
7488 9973 1.066573 CAGGCACCTTGTCTCGATTCT 60.067 52.381 0.00 0.00 23.66 2.40
7558 10062 3.058155 GCCTTTCTCTCCGAAAAGAAACC 60.058 47.826 0.00 0.00 40.87 3.27
7575 10079 3.335579 GAGTGTTCGTTCTATGGCCTTT 58.664 45.455 3.32 0.00 0.00 3.11
7665 10169 9.747898 AGGATGTATGAATACAAGTTTTGGTAA 57.252 29.630 7.21 0.00 45.40 2.85
7672 10176 8.109634 ACCAGAAAGGATGTATGAATACAAGTT 58.890 33.333 7.21 0.00 42.75 2.66
7681 10185 4.532126 AGTCACACCAGAAAGGATGTATGA 59.468 41.667 0.00 0.00 41.22 2.15
7784 10288 2.735134 GGGAAAGTGCGTACAGTAACTG 59.265 50.000 6.38 0.00 37.52 3.16
7785 10289 2.631545 AGGGAAAGTGCGTACAGTAACT 59.368 45.455 6.38 0.00 0.00 2.24
7842 10349 5.571791 TCCATGTCATATGGATCACACAT 57.428 39.130 0.00 1.35 42.81 3.21
7896 10403 7.265599 TGGAGGTAAAAGATGGAATTCACTA 57.734 36.000 7.93 0.00 0.00 2.74
7898 10405 6.834168 TTGGAGGTAAAAGATGGAATTCAC 57.166 37.500 7.93 0.00 0.00 3.18
7977 10484 4.097589 TGCGCCACATATTTGATTCAATCA 59.902 37.500 4.18 0.00 37.55 2.57
7979 10486 4.652421 TGCGCCACATATTTGATTCAAT 57.348 36.364 4.18 0.00 0.00 2.57
7998 10505 6.627243 AGGAAAACTAAACGGGATAAAATGC 58.373 36.000 0.00 0.00 0.00 3.56
8010 10517 8.936070 ACAACAAAATGGTAGGAAAACTAAAC 57.064 30.769 0.00 0.00 32.37 2.01
8045 10552 7.809806 GGAAGAAAAATAAACCACAGATGACAG 59.190 37.037 0.00 0.00 0.00 3.51
8086 10593 1.409661 GGCCGGTCCAGTTTATTCCAT 60.410 52.381 1.90 0.00 34.01 3.41
8206 10713 6.631971 TCTGTGAATGTTGCTTTTCATGTA 57.368 33.333 0.00 0.00 34.60 2.29
8212 10719 7.671495 AAAGTTTTCTGTGAATGTTGCTTTT 57.329 28.000 0.00 0.00 0.00 2.27
8226 10733 8.661352 AAACATGGTTTCCATAAAGTTTTCTG 57.339 30.769 0.00 0.00 43.15 3.02
8354 10863 7.890515 TGCACTATTCATTGTTGGATTTGTTA 58.109 30.769 0.00 0.00 0.00 2.41
8505 11015 8.472683 TCAACGATGTTTGAAGTTTTGAAAAT 57.527 26.923 0.00 0.00 32.42 1.82
8577 11087 7.603784 GCAAAAATGGGGGAATCATGATAATAC 59.396 37.037 9.04 0.00 0.00 1.89
8602 11112 1.405933 GGGACATTGGAATTTGCCTGC 60.406 52.381 0.00 0.00 0.00 4.85
8611 11121 9.771534 CAAAAACTAAATTTAGGGACATTGGAA 57.228 29.630 25.25 0.00 35.08 3.53
8720 11238 0.827507 ACCATGTTGGACACCAAGGC 60.828 55.000 3.32 0.00 44.82 4.35
8768 11287 5.812642 AGCAAGGTATACAAAATGAGTCTCG 59.187 40.000 5.01 0.00 0.00 4.04
8893 11414 5.614308 AGATGTTAGCGGAATCATCATCAA 58.386 37.500 0.00 0.00 39.06 2.57
9000 11521 5.641636 AGTGAAAATTGTTTGGTTGGTTGTC 59.358 36.000 0.00 0.00 0.00 3.18
9039 11563 1.026718 GCTTCCGCACCTGCATAAGT 61.027 55.000 9.26 0.00 42.21 2.24
9052 11576 1.002087 AGGTAGGAACTTGTGCTTCCG 59.998 52.381 0.00 0.00 41.97 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.