Multiple sequence alignment - TraesCS4B01G127300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G127300 chr4B 100.000 7053 0 0 1 7053 166706811 166699759 0.000000e+00 13025.0
1 TraesCS4B01G127300 chr4B 95.954 173 7 0 5223 5395 585609288 585609116 1.500000e-71 281.0
2 TraesCS4B01G127300 chr4D 97.545 2525 36 6 542 3045 131372262 131374781 0.000000e+00 4296.0
3 TraesCS4B01G127300 chr4D 98.900 2000 21 1 3226 5225 131374764 131376762 0.000000e+00 3570.0
4 TraesCS4B01G127300 chr4D 97.673 1676 23 6 5385 7053 131376760 131378426 0.000000e+00 2865.0
5 TraesCS4B01G127300 chr4D 84.572 538 41 25 1 532 131371719 131372220 4.910000e-136 496.0
6 TraesCS4B01G127300 chr4D 95.882 170 6 1 5220 5388 93338039 93338208 2.510000e-69 274.0
7 TraesCS4B01G127300 chr4D 77.957 186 32 7 6805 6981 131378831 131379016 2.690000e-19 108.0
8 TraesCS4B01G127300 chr4A 97.844 1948 35 3 3285 5226 434080913 434078967 0.000000e+00 3358.0
9 TraesCS4B01G127300 chr4A 96.575 1489 41 4 1560 3045 434082463 434080982 0.000000e+00 2459.0
10 TraesCS4B01G127300 chr4A 96.341 984 22 7 5401 6379 434078958 434077984 0.000000e+00 1605.0
11 TraesCS4B01G127300 chr4A 94.645 1027 48 6 542 1566 434083516 434082495 0.000000e+00 1585.0
12 TraesCS4B01G127300 chr4A 94.675 676 36 0 6378 7053 434077806 434077131 0.000000e+00 1050.0
13 TraesCS4B01G127300 chr4A 82.613 1041 135 19 2017 3045 737376655 737375649 0.000000e+00 878.0
14 TraesCS4B01G127300 chr4A 88.636 308 21 5 1 298 434085314 434085011 5.200000e-96 363.0
15 TraesCS4B01G127300 chr4A 95.480 177 7 1 5220 5395 166991998 166991822 1.500000e-71 281.0
16 TraesCS4B01G127300 chr4A 96.429 168 5 1 5223 5389 18115555 18115388 6.970000e-70 276.0
17 TraesCS4B01G127300 chr4A 92.857 182 11 2 5223 5402 734066119 734066300 5.430000e-66 263.0
18 TraesCS4B01G127300 chr4A 85.714 252 17 8 299 532 434083808 434083558 1.520000e-61 248.0
19 TraesCS4B01G127300 chr4A 85.119 168 23 1 3955 4120 181680514 181680347 3.380000e-38 171.0
20 TraesCS4B01G127300 chr4A 85.906 149 14 3 3396 3537 684030326 684030178 1.230000e-32 152.0
21 TraesCS4B01G127300 chr4A 85.906 149 14 3 3396 3537 684056783 684056635 1.230000e-32 152.0
22 TraesCS4B01G127300 chr4A 86.022 93 13 0 6950 7042 434076958 434076866 4.500000e-17 100.0
23 TraesCS4B01G127300 chr5A 83.459 1064 124 22 1993 3045 567117658 567116636 0.000000e+00 942.0
24 TraesCS4B01G127300 chr5A 85.802 162 23 0 3955 4116 375561254 375561093 9.410000e-39 172.0
25 TraesCS4B01G127300 chr5A 85.802 162 23 0 3955 4116 672324735 672324574 9.410000e-39 172.0
26 TraesCS4B01G127300 chr5A 85.802 162 23 0 3955 4116 680493756 680493595 9.410000e-39 172.0
27 TraesCS4B01G127300 chr5A 88.112 143 10 3 3396 3531 659134629 659134771 5.660000e-36 163.0
28 TraesCS4B01G127300 chr5A 86.577 149 13 3 3396 3537 105423562 105423414 2.630000e-34 158.0
29 TraesCS4B01G127300 chr1B 82.241 1053 141 19 2005 3045 461898965 461899983 0.000000e+00 867.0
30 TraesCS4B01G127300 chr1B 99.454 183 1 0 3043 3225 225811788 225811970 4.080000e-87 333.0
31 TraesCS4B01G127300 chr1B 84.568 162 25 0 3955 4116 9085967 9086128 2.040000e-35 161.0
32 TraesCS4B01G127300 chr7D 81.843 1085 130 21 1987 3045 118441289 118442332 0.000000e+00 850.0
33 TraesCS4B01G127300 chr7D 85.629 167 17 3 3396 3555 118442417 118442583 1.220000e-37 169.0
34 TraesCS4B01G127300 chr7D 83.962 106 10 3 720 818 413100651 413100756 2.090000e-15 95.3
35 TraesCS4B01G127300 chr6D 81.149 801 85 27 2270 3045 432973908 432973149 3.670000e-162 582.0
36 TraesCS4B01G127300 chr6D 85.062 241 35 1 1993 2233 432974146 432973907 1.970000e-60 244.0
37 TraesCS4B01G127300 chr6D 85.802 162 23 0 3955 4116 407195095 407194934 9.410000e-39 172.0
38 TraesCS4B01G127300 chr6D 85.629 167 17 3 3396 3555 432973064 432972898 1.220000e-37 169.0
39 TraesCS4B01G127300 chr3A 79.241 790 104 22 3314 4077 28424631 28425386 4.910000e-136 496.0
40 TraesCS4B01G127300 chr3A 81.949 277 38 7 2779 3045 28424310 28424584 2.560000e-54 224.0
41 TraesCS4B01G127300 chr3D 83.938 386 51 6 2670 3045 20755690 20756074 6.730000e-95 359.0
42 TraesCS4B01G127300 chr7A 98.919 185 2 0 3044 3228 535920348 535920164 1.470000e-86 331.0
43 TraesCS4B01G127300 chr3B 99.451 182 1 0 3046 3227 556051768 556051949 1.470000e-86 331.0
44 TraesCS4B01G127300 chr3B 92.958 213 13 2 3031 3241 738697733 738697521 6.870000e-80 309.0
45 TraesCS4B01G127300 chr3B 94.886 176 8 1 5214 5388 54082902 54083077 2.510000e-69 274.0
46 TraesCS4B01G127300 chr3B 85.185 162 24 0 3955 4116 8724296 8724135 4.380000e-37 167.0
47 TraesCS4B01G127300 chr2A 99.451 182 1 0 3046 3227 639065948 639066129 1.470000e-86 331.0
48 TraesCS4B01G127300 chr2B 99.448 181 0 1 3046 3225 121669515 121669695 1.900000e-85 327.0
49 TraesCS4B01G127300 chr2B 94.886 176 7 2 5222 5395 28427172 28427347 2.510000e-69 274.0
50 TraesCS4B01G127300 chr2B 87.209 172 22 0 2336 2507 623526038 623525867 5.580000e-46 196.0
51 TraesCS4B01G127300 chr6B 98.378 185 3 0 3045 3229 17498907 17498723 6.820000e-85 326.0
52 TraesCS4B01G127300 chr6B 92.958 213 12 3 3031 3241 338654920 338654709 2.470000e-79 307.0
53 TraesCS4B01G127300 chr6B 87.209 172 22 0 2336 2507 600607217 600607046 5.580000e-46 196.0
54 TraesCS4B01G127300 chr1A 97.884 189 2 2 3043 3229 82525880 82526068 6.820000e-85 326.0
55 TraesCS4B01G127300 chr1A 89.474 95 10 0 2414 2508 62480026 62479932 3.460000e-23 121.0
56 TraesCS4B01G127300 chr1D 95.882 170 6 1 5218 5386 178466475 178466306 2.510000e-69 274.0
57 TraesCS4B01G127300 chr5D 92.973 185 10 3 5204 5386 25039961 25040144 4.190000e-67 267.0
58 TraesCS4B01G127300 chrUn 87.209 172 22 0 2336 2507 316173393 316173564 5.580000e-46 196.0
59 TraesCS4B01G127300 chrUn 85.906 149 14 3 3396 3537 393662566 393662418 1.230000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G127300 chr4B 166699759 166706811 7052 True 13025.000000 13025 100.000000 1 7053 1 chr4B.!!$R1 7052
1 TraesCS4B01G127300 chr4D 131371719 131379016 7297 False 2267.000000 4296 91.329400 1 7053 5 chr4D.!!$F2 7052
2 TraesCS4B01G127300 chr4A 434076866 434085314 8448 True 1346.000000 3358 92.556500 1 7053 8 chr4A.!!$R7 7052
3 TraesCS4B01G127300 chr4A 737375649 737376655 1006 True 878.000000 878 82.613000 2017 3045 1 chr4A.!!$R6 1028
4 TraesCS4B01G127300 chr5A 567116636 567117658 1022 True 942.000000 942 83.459000 1993 3045 1 chr5A.!!$R3 1052
5 TraesCS4B01G127300 chr1B 461898965 461899983 1018 False 867.000000 867 82.241000 2005 3045 1 chr1B.!!$F3 1040
6 TraesCS4B01G127300 chr7D 118441289 118442583 1294 False 509.500000 850 83.736000 1987 3555 2 chr7D.!!$F2 1568
7 TraesCS4B01G127300 chr6D 432972898 432974146 1248 True 331.666667 582 83.946667 1993 3555 3 chr6D.!!$R2 1562
8 TraesCS4B01G127300 chr3A 28424310 28425386 1076 False 360.000000 496 80.595000 2779 4077 2 chr3A.!!$F1 1298

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 1648 0.606944 CGGCTACGAGAGGATAGGCT 60.607 60.000 0.00 0.00 44.60 4.58 F
419 1649 0.885196 GGCTACGAGAGGATAGGCTG 59.115 60.000 0.00 0.00 40.05 4.85 F
1308 2603 1.002011 GGAGGGGTTCTCAGTTGCC 60.002 63.158 0.00 0.00 44.19 4.52 F
2320 3654 0.374758 CAGTGACATACATGTGGCGC 59.625 55.000 9.11 0.00 41.95 6.53 F
3106 4495 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69 F
3115 4504 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53 F
3152 4541 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67 F
3153 4542 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73 F
3179 4568 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46 F
3180 4569 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46 F
5059 6521 0.804989 AAGATGGCGCTGTAGTTTGC 59.195 50.000 7.64 0.00 0.00 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1241 2536 1.034838 CCTCACCCTCCTCGACTGAG 61.035 65.000 1.05 1.05 42.18 3.35 R
1827 3161 1.982660 CTGCAAGATGGGATGCTGAT 58.017 50.000 0.00 0.00 42.12 2.90 R
3076 4465 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85 R
3133 4522 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74 R
5001 6463 1.276421 ACACTCGAATCAGGACCCTTG 59.724 52.381 0.00 0.00 0.00 3.61 R
5059 6521 5.530915 TGTAAGATCTGATAAAAATGGGGCG 59.469 40.000 0.00 0.00 0.00 6.13 R
5226 6688 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30 R
5228 6690 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63 R
5254 6716 5.290493 TGTAGTCACCTGTTGAAATCACT 57.710 39.130 0.00 0.00 35.39 3.41 R
5259 6721 5.456548 TCGTATGTAGTCACCTGTTGAAA 57.543 39.130 0.00 0.00 35.39 2.69 R
6843 8493 0.391597 TTCGGGTTTCTTCTCAGCGT 59.608 50.000 0.00 0.00 0.00 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.716909 TGAAAGAAACCAAGAAAAACAATGAAC 58.283 29.630 0.00 0.00 0.00 3.18
36 37 9.061435 AGAAACCAAGAAAAACAATGAACAAAA 57.939 25.926 0.00 0.00 0.00 2.44
245 256 5.242615 AGAGAGCAAGATATAGCATTCGTGA 59.757 40.000 0.00 0.00 0.00 4.35
275 286 4.004982 GCATTGCCACCATCAAAGAAAAT 58.995 39.130 0.00 0.00 0.00 1.82
345 1557 2.510411 CCTGTGGCCTGTGTGTCA 59.490 61.111 3.32 0.00 0.00 3.58
398 1610 3.807538 CAGGTCGTGCTGGCATGC 61.808 66.667 9.90 9.90 33.28 4.06
407 1619 4.529219 CTGGCATGCCGGCTACGA 62.529 66.667 31.99 11.62 44.60 3.43
418 1648 0.606944 CGGCTACGAGAGGATAGGCT 60.607 60.000 0.00 0.00 44.60 4.58
419 1649 0.885196 GGCTACGAGAGGATAGGCTG 59.115 60.000 0.00 0.00 40.05 4.85
507 1737 2.817258 CAAACAGTCGAAATAGGCCCAA 59.183 45.455 0.00 0.00 0.00 4.12
534 1764 4.988598 CTGGGCTCAACGTGCGGT 62.989 66.667 0.00 0.00 0.00 5.68
535 1765 4.980805 TGGGCTCAACGTGCGGTC 62.981 66.667 0.00 0.00 0.00 4.79
538 1768 3.764049 GCTCAACGTGCGGTCGTC 61.764 66.667 0.00 0.00 43.38 4.20
539 1769 3.103911 CTCAACGTGCGGTCGTCC 61.104 66.667 0.00 0.00 43.38 4.79
585 1866 2.531376 GCCCGTGTATTAGGCGTGC 61.531 63.158 0.00 0.00 36.84 5.34
941 2236 2.807676 AGCAGAATTTACAGGGTTGGG 58.192 47.619 0.00 0.00 0.00 4.12
1096 2391 3.120979 CTACGATCCCTGCACGCGA 62.121 63.158 15.93 0.00 0.00 5.87
1305 2600 1.831652 CTGCGGAGGGGTTCTCAGTT 61.832 60.000 0.00 0.00 44.19 3.16
1308 2603 1.002011 GGAGGGGTTCTCAGTTGCC 60.002 63.158 0.00 0.00 44.19 4.52
1314 2609 1.741770 GTTCTCAGTTGCCGGCGAT 60.742 57.895 21.90 5.72 0.00 4.58
1649 2982 3.620488 TCTGAGTGACAAAAGGCAAAGT 58.380 40.909 0.00 0.00 0.00 2.66
1714 3047 7.014326 TGGAGTAGAATGTAATAGGCTGTACAG 59.986 40.741 18.93 18.93 33.89 2.74
1715 3048 7.014422 GGAGTAGAATGTAATAGGCTGTACAGT 59.986 40.741 23.44 13.45 33.89 3.55
1716 3049 8.991783 AGTAGAATGTAATAGGCTGTACAGTA 57.008 34.615 23.44 9.96 33.89 2.74
1717 3050 8.848182 AGTAGAATGTAATAGGCTGTACAGTAC 58.152 37.037 23.44 16.84 33.89 2.73
1718 3051 7.655521 AGAATGTAATAGGCTGTACAGTACA 57.344 36.000 23.44 21.24 33.89 2.90
1811 3144 6.534475 AACACTAAGACCGTATATGTGGAA 57.466 37.500 2.36 0.00 0.00 3.53
1812 3145 6.534475 ACACTAAGACCGTATATGTGGAAA 57.466 37.500 2.36 0.00 0.00 3.13
1931 3265 4.872691 AGCTACTTCATTCCGATTCAACTG 59.127 41.667 0.00 0.00 0.00 3.16
2029 3363 8.644318 AATACCGACTGACATTTGTAATAGTC 57.356 34.615 10.08 10.08 33.76 2.59
2267 3601 2.142220 TGGTCTTTCCAGCTTCGGT 58.858 52.632 0.00 0.00 41.93 4.69
2320 3654 0.374758 CAGTGACATACATGTGGCGC 59.625 55.000 9.11 0.00 41.95 6.53
3015 4403 7.896383 TTATTTTATGCAACTCAGGGCTTAT 57.104 32.000 0.00 0.00 0.00 1.73
3032 4420 7.231317 CAGGGCTTATTTCTCCATAGCAATTAA 59.769 37.037 0.00 0.00 0.00 1.40
3055 4444 3.769739 AAACAAATTTGAAGGGGAGCC 57.230 42.857 24.64 0.00 0.00 4.70
3056 4445 2.702270 ACAAATTTGAAGGGGAGCCT 57.298 45.000 24.64 0.00 0.00 4.58
3057 4446 2.976440 ACAAATTTGAAGGGGAGCCTT 58.024 42.857 24.64 0.00 0.00 4.35
3058 4447 2.634453 ACAAATTTGAAGGGGAGCCTTG 59.366 45.455 24.64 0.00 0.00 3.61
3059 4448 1.942776 AATTTGAAGGGGAGCCTTGG 58.057 50.000 0.00 0.00 0.00 3.61
3060 4449 0.615827 ATTTGAAGGGGAGCCTTGGC 60.616 55.000 2.97 2.97 0.00 4.52
3061 4450 3.567579 TTGAAGGGGAGCCTTGGCG 62.568 63.158 5.95 0.00 0.00 5.69
3069 4458 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
3070 4459 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
3071 4460 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
3072 4461 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
3073 4462 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
3074 4463 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
3075 4464 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
3080 4469 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
3081 4470 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
3082 4471 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
3083 4472 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
3084 4473 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
3085 4474 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
3086 4475 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
3087 4476 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
3088 4477 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
3089 4478 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3090 4479 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3091 4480 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3092 4481 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3093 4482 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3094 4483 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3104 4493 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
3105 4494 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
3106 4495 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3107 4496 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
3108 4497 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
3109 4498 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
3110 4499 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
3111 4500 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
3112 4501 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
3113 4502 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
3114 4503 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
3115 4504 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
3116 4505 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
3117 4506 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
3118 4507 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
3132 4521 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3133 4522 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3134 4523 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3135 4524 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3136 4525 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3137 4526 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3138 4527 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3139 4528 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3140 4529 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3141 4530 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3142 4531 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3143 4532 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3144 4533 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3145 4534 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3146 4535 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3147 4536 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3148 4537 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3149 4538 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3150 4539 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3151 4540 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3152 4541 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3153 4542 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
3154 4543 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
3155 4544 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
3156 4545 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
3157 4546 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
3158 4547 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
3159 4548 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
3160 4549 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
3161 4550 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
3162 4551 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
3163 4552 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
3164 4553 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
3165 4554 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
3166 4555 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
3167 4556 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
3168 4557 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
3169 4558 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
3174 4563 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3175 4564 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3176 4565 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3177 4566 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3178 4567 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3179 4568 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3180 4569 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3181 4570 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3182 4571 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3188 4577 4.735599 GGACCCTTCCCCGACCCT 62.736 72.222 0.00 0.00 35.57 4.34
3189 4578 3.400054 GACCCTTCCCCGACCCTG 61.400 72.222 0.00 0.00 0.00 4.45
3213 4602 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
3214 4603 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
3215 4604 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
3216 4605 1.821332 GGAGCTACATGCACTGGGC 60.821 63.158 0.00 0.00 45.94 5.36
3217 4606 1.222936 GAGCTACATGCACTGGGCT 59.777 57.895 2.50 13.76 45.94 5.19
3218 4607 1.077930 AGCTACATGCACTGGGCTG 60.078 57.895 2.50 1.44 45.94 4.85
3219 4608 2.768492 GCTACATGCACTGGGCTGC 61.768 63.158 2.50 0.00 45.15 5.25
3220 4609 2.045045 TACATGCACTGGGCTGCC 60.045 61.111 11.05 11.05 45.15 4.85
3221 4610 3.643595 TACATGCACTGGGCTGCCC 62.644 63.158 30.97 30.97 45.71 5.36
3222 4611 4.753662 CATGCACTGGGCTGCCCT 62.754 66.667 35.80 16.65 45.70 5.19
3223 4612 3.988678 ATGCACTGGGCTGCCCTT 61.989 61.111 35.80 21.48 45.70 3.95
3224 4613 3.534704 ATGCACTGGGCTGCCCTTT 62.535 57.895 35.80 21.12 45.70 3.11
3225 4614 2.035626 GCACTGGGCTGCCCTTTA 59.964 61.111 35.80 17.25 45.70 1.85
3226 4615 1.606313 GCACTGGGCTGCCCTTTAA 60.606 57.895 35.80 16.87 45.70 1.52
3227 4616 0.972471 GCACTGGGCTGCCCTTTAAT 60.972 55.000 35.80 15.43 45.70 1.40
3228 4617 1.560505 CACTGGGCTGCCCTTTAATT 58.439 50.000 35.80 9.50 45.70 1.40
3229 4618 2.733956 CACTGGGCTGCCCTTTAATTA 58.266 47.619 35.80 14.98 45.70 1.40
3230 4619 3.096092 CACTGGGCTGCCCTTTAATTAA 58.904 45.455 35.80 14.23 45.70 1.40
3231 4620 3.513515 CACTGGGCTGCCCTTTAATTAAA 59.486 43.478 35.80 13.49 45.70 1.52
3232 4621 4.020662 CACTGGGCTGCCCTTTAATTAAAA 60.021 41.667 35.80 12.74 45.70 1.52
3233 4622 4.595350 ACTGGGCTGCCCTTTAATTAAAAA 59.405 37.500 35.80 12.21 45.70 1.94
3545 4980 7.582435 TTTTCTAACGAGAGCTATTGAAGTG 57.418 36.000 1.68 0.00 31.77 3.16
3999 5459 2.301346 CCAAGGACAAGCAACTCAAGT 58.699 47.619 0.00 0.00 0.00 3.16
4418 5880 9.649167 GCTTCCTTATAGTTTTGTACTTCTACA 57.351 33.333 0.00 0.00 38.33 2.74
4791 6253 8.567948 TGAGTGTTTCTCATTAAATTCCAACTC 58.432 33.333 0.00 0.00 46.77 3.01
4795 6257 7.039784 TGTTTCTCATTAAATTCCAACTCTGGG 60.040 37.037 0.00 0.00 43.71 4.45
4818 6280 3.694043 TTCTGGATCATCACCGACAAA 57.306 42.857 0.00 0.00 0.00 2.83
5001 6463 7.224297 TCTCCTGTAAATGGATTATACCTTGC 58.776 38.462 0.00 0.00 32.56 4.01
5059 6521 0.804989 AAGATGGCGCTGTAGTTTGC 59.195 50.000 7.64 0.00 0.00 3.68
5228 6690 9.566432 AGAAAATTCTGATTCACATATACTCCC 57.434 33.333 0.00 0.00 35.89 4.30
5229 6691 9.566432 GAAAATTCTGATTCACATATACTCCCT 57.434 33.333 0.00 0.00 0.00 4.20
5230 6692 9.566432 AAAATTCTGATTCACATATACTCCCTC 57.434 33.333 0.00 0.00 0.00 4.30
5232 6694 4.767409 TCTGATTCACATATACTCCCTCCG 59.233 45.833 0.00 0.00 0.00 4.63
5233 6695 4.480115 TGATTCACATATACTCCCTCCGT 58.520 43.478 0.00 0.00 0.00 4.69
5234 6696 4.899457 TGATTCACATATACTCCCTCCGTT 59.101 41.667 0.00 0.00 0.00 4.44
5235 6697 4.931661 TTCACATATACTCCCTCCGTTC 57.068 45.455 0.00 0.00 0.00 3.95
5236 6698 3.228453 TCACATATACTCCCTCCGTTCC 58.772 50.000 0.00 0.00 0.00 3.62
5237 6699 3.117246 TCACATATACTCCCTCCGTTCCT 60.117 47.826 0.00 0.00 0.00 3.36
5238 6700 4.105217 TCACATATACTCCCTCCGTTCCTA 59.895 45.833 0.00 0.00 0.00 2.94
5239 6701 4.831155 CACATATACTCCCTCCGTTCCTAA 59.169 45.833 0.00 0.00 0.00 2.69
5240 6702 5.303589 CACATATACTCCCTCCGTTCCTAAA 59.696 44.000 0.00 0.00 0.00 1.85
5241 6703 6.014499 CACATATACTCCCTCCGTTCCTAAAT 60.014 42.308 0.00 0.00 0.00 1.40
5242 6704 7.177921 CACATATACTCCCTCCGTTCCTAAATA 59.822 40.741 0.00 0.00 0.00 1.40
5243 6705 7.899709 ACATATACTCCCTCCGTTCCTAAATAT 59.100 37.037 0.00 0.00 0.00 1.28
5244 6706 8.759782 CATATACTCCCTCCGTTCCTAAATATT 58.240 37.037 0.00 0.00 0.00 1.28
5245 6707 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5246 6708 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5247 6709 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5248 6710 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5249 6711 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5250 6712 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5251 6713 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5252 6714 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
5253 6715 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
5254 6716 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
5255 6717 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
5256 6718 9.379791 CCGTTCCTAAATATTTGTCTTTCTAGT 57.620 33.333 11.05 0.00 0.00 2.57
5268 6730 7.496529 TTGTCTTTCTAGTGATTTCAACAGG 57.503 36.000 0.00 0.00 0.00 4.00
5269 6731 6.591935 TGTCTTTCTAGTGATTTCAACAGGT 58.408 36.000 0.00 0.00 0.00 4.00
5270 6732 6.483307 TGTCTTTCTAGTGATTTCAACAGGTG 59.517 38.462 0.00 0.00 0.00 4.00
5271 6733 6.706270 GTCTTTCTAGTGATTTCAACAGGTGA 59.294 38.462 0.00 0.00 0.00 4.02
5272 6734 6.706270 TCTTTCTAGTGATTTCAACAGGTGAC 59.294 38.462 0.00 0.00 35.39 3.67
5273 6735 5.808366 TCTAGTGATTTCAACAGGTGACT 57.192 39.130 0.00 0.00 46.44 3.41
5274 6736 6.911250 TCTAGTGATTTCAACAGGTGACTA 57.089 37.500 0.00 0.00 40.21 2.59
5275 6737 6.688578 TCTAGTGATTTCAACAGGTGACTAC 58.311 40.000 0.00 0.00 40.21 2.73
5276 6738 5.290493 AGTGATTTCAACAGGTGACTACA 57.710 39.130 0.00 0.00 40.21 2.74
5277 6739 5.869579 AGTGATTTCAACAGGTGACTACAT 58.130 37.500 0.00 0.00 40.21 2.29
5278 6740 7.004555 AGTGATTTCAACAGGTGACTACATA 57.995 36.000 0.00 0.00 40.21 2.29
5279 6741 6.874134 AGTGATTTCAACAGGTGACTACATAC 59.126 38.462 0.00 0.00 40.21 2.39
5280 6742 5.867174 TGATTTCAACAGGTGACTACATACG 59.133 40.000 0.00 0.00 40.21 3.06
5281 6743 5.456548 TTTCAACAGGTGACTACATACGA 57.543 39.130 0.00 0.00 40.21 3.43
5282 6744 5.456548 TTCAACAGGTGACTACATACGAA 57.543 39.130 0.00 0.00 40.21 3.85
5283 6745 5.055642 TCAACAGGTGACTACATACGAAG 57.944 43.478 0.00 0.00 40.21 3.79
5284 6746 4.521639 TCAACAGGTGACTACATACGAAGT 59.478 41.667 0.00 0.00 43.06 3.01
5285 6747 5.706833 TCAACAGGTGACTACATACGAAGTA 59.293 40.000 0.00 0.00 44.98 2.24
5286 6748 6.207221 TCAACAGGTGACTACATACGAAGTAA 59.793 38.462 0.00 0.00 44.16 2.24
5287 6749 6.579666 ACAGGTGACTACATACGAAGTAAA 57.420 37.500 0.00 0.00 44.16 2.01
5288 6750 6.985117 ACAGGTGACTACATACGAAGTAAAA 58.015 36.000 0.00 0.00 44.16 1.52
5289 6751 7.609056 ACAGGTGACTACATACGAAGTAAAAT 58.391 34.615 0.00 0.00 44.16 1.82
5290 6752 7.544566 ACAGGTGACTACATACGAAGTAAAATG 59.455 37.037 0.00 0.00 44.16 2.32
5291 6753 7.758076 CAGGTGACTACATACGAAGTAAAATGA 59.242 37.037 0.00 0.00 44.16 2.57
5292 6754 7.974501 AGGTGACTACATACGAAGTAAAATGAG 59.025 37.037 0.00 0.00 44.15 2.90
5303 6765 8.240883 ACGAAGTAAAATGAGTGAATCTACAC 57.759 34.615 0.00 0.00 41.94 2.90
5336 6798 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
5338 6800 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
5339 6801 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
5340 6802 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
5341 6803 8.323567 TCTATATACATCCGTATGTGGTAGTCA 58.676 37.037 3.56 0.00 45.99 3.41
5342 6804 7.956328 ATATACATCCGTATGTGGTAGTCAT 57.044 36.000 3.56 0.00 45.99 3.06
5343 6805 6.665992 ATACATCCGTATGTGGTAGTCATT 57.334 37.500 3.56 0.00 45.99 2.57
5344 6806 5.353394 ACATCCGTATGTGGTAGTCATTT 57.647 39.130 0.00 0.00 44.79 2.32
5345 6807 5.116180 ACATCCGTATGTGGTAGTCATTTG 58.884 41.667 0.00 0.00 44.79 2.32
5346 6808 5.105106 ACATCCGTATGTGGTAGTCATTTGA 60.105 40.000 0.00 0.00 44.79 2.69
5347 6809 5.408880 TCCGTATGTGGTAGTCATTTGAA 57.591 39.130 0.00 0.00 0.00 2.69
5348 6810 5.795972 TCCGTATGTGGTAGTCATTTGAAA 58.204 37.500 0.00 0.00 0.00 2.69
5349 6811 6.411376 TCCGTATGTGGTAGTCATTTGAAAT 58.589 36.000 0.00 0.00 0.00 2.17
5350 6812 6.537301 TCCGTATGTGGTAGTCATTTGAAATC 59.463 38.462 0.00 0.00 0.00 2.17
5351 6813 6.538742 CCGTATGTGGTAGTCATTTGAAATCT 59.461 38.462 0.00 0.00 0.00 2.40
5352 6814 7.065803 CCGTATGTGGTAGTCATTTGAAATCTT 59.934 37.037 0.00 0.00 0.00 2.40
5353 6815 8.450964 CGTATGTGGTAGTCATTTGAAATCTTT 58.549 33.333 0.00 0.00 0.00 2.52
5380 6842 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
5381 6843 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5382 6844 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5383 6845 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5384 6846 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
5395 6857 1.137086 CGGAGGGAGTACAAGTCATGG 59.863 57.143 0.00 0.00 0.00 3.66
5872 7337 1.379044 CACTGGGAAGGATGGTGCC 60.379 63.158 0.00 0.00 0.00 5.01
5976 7441 2.167693 TCTGTGTTCTTGTCAGGAACGT 59.832 45.455 19.45 0.00 44.02 3.99
6007 7472 0.102481 CGTATAGACGGGCACTTGCT 59.898 55.000 0.96 0.00 45.63 3.91
6221 7691 2.684943 TGAGGGTTTGAGGTGTGTCTA 58.315 47.619 0.00 0.00 0.00 2.59
6222 7692 3.042682 TGAGGGTTTGAGGTGTGTCTAA 58.957 45.455 0.00 0.00 0.00 2.10
6223 7693 3.071023 TGAGGGTTTGAGGTGTGTCTAAG 59.929 47.826 0.00 0.00 0.00 2.18
6224 7694 3.046374 AGGGTTTGAGGTGTGTCTAAGT 58.954 45.455 0.00 0.00 0.00 2.24
6306 7777 0.681887 TTATGGTCGACAGCTCGGGA 60.682 55.000 18.91 0.00 40.58 5.14
6823 8473 2.971452 GAGACGAAACCCGAGGCT 59.029 61.111 0.00 0.00 41.76 4.58
6843 8493 3.072468 CTCCTACGTCCCCGCCAA 61.072 66.667 0.00 0.00 37.70 4.52
6897 8547 2.878526 GCACCCAGAATAAACCCGAAGT 60.879 50.000 0.00 0.00 0.00 3.01
6940 8590 0.610687 CTGAGAAGAAACCCGAGGCT 59.389 55.000 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.926832 CACCGGTTTTCTTCAGTTTTGTTT 59.073 37.500 2.97 0.00 0.00 2.83
81 82 6.530120 AGTGGTTTGGTCTGTTTTTCTTTTT 58.470 32.000 0.00 0.00 0.00 1.94
82 83 6.109156 AGTGGTTTGGTCTGTTTTTCTTTT 57.891 33.333 0.00 0.00 0.00 2.27
83 84 5.738619 AGTGGTTTGGTCTGTTTTTCTTT 57.261 34.783 0.00 0.00 0.00 2.52
245 256 3.071312 TGATGGTGGCAATGCTTTTTCTT 59.929 39.130 4.82 0.00 0.00 2.52
275 286 3.154710 ACACGAGTGGACTGTCTAATCA 58.845 45.455 19.06 1.89 34.19 2.57
362 1574 3.502211 CCTGATTATAAACATGTCGGGCC 59.498 47.826 0.00 0.00 0.00 5.80
398 1610 1.587933 GCCTATCCTCTCGTAGCCGG 61.588 65.000 0.00 0.00 33.95 6.13
399 1611 0.606944 AGCCTATCCTCTCGTAGCCG 60.607 60.000 0.00 0.00 0.00 5.52
401 1613 0.885196 CCAGCCTATCCTCTCGTAGC 59.115 60.000 0.00 0.00 0.00 3.58
403 1615 1.545875 GCTCCAGCCTATCCTCTCGTA 60.546 57.143 0.00 0.00 34.31 3.43
404 1616 0.825840 GCTCCAGCCTATCCTCTCGT 60.826 60.000 0.00 0.00 34.31 4.18
406 1618 1.963679 CGCTCCAGCCTATCCTCTC 59.036 63.158 0.00 0.00 37.91 3.20
407 1619 2.206536 GCGCTCCAGCCTATCCTCT 61.207 63.158 0.00 0.00 37.91 3.69
467 1697 6.133356 TGTTTGGGGGCCTAATCTATAAAAG 58.867 40.000 0.84 0.00 0.00 2.27
507 1737 2.230660 GTTGAGCCCAGCAGTAGTTTT 58.769 47.619 0.00 0.00 0.00 2.43
935 2230 3.400054 CTCCCGACTCCCCCAACC 61.400 72.222 0.00 0.00 0.00 3.77
941 2236 2.059190 GGAACCTCTCCCGACTCCC 61.059 68.421 0.00 0.00 38.44 4.30
1096 2391 4.104417 GACGCGAGCTGAGACGGT 62.104 66.667 15.93 0.00 0.00 4.83
1241 2536 1.034838 CCTCACCCTCCTCGACTGAG 61.035 65.000 1.05 1.05 42.18 3.35
1339 2634 2.091720 TGAACCTCTTGGCATGCCATAT 60.092 45.455 38.78 20.78 46.64 1.78
1484 2779 7.081349 CGACCAAATAAATTAACACTTGAGCA 58.919 34.615 0.00 0.00 0.00 4.26
1714 3047 4.992381 CAGGAACACTGCTAACTTGTAC 57.008 45.455 0.00 0.00 40.97 2.90
1811 3144 7.363268 GGGATGCTGATCTTGTTACTCATTTTT 60.363 37.037 0.00 0.00 0.00 1.94
1812 3145 6.096001 GGGATGCTGATCTTGTTACTCATTTT 59.904 38.462 0.00 0.00 0.00 1.82
1827 3161 1.982660 CTGCAAGATGGGATGCTGAT 58.017 50.000 0.00 0.00 42.12 2.90
1931 3265 2.283676 TCCACCTCTGGACCGTCC 60.284 66.667 10.96 10.96 42.15 4.79
2029 3363 5.858581 GCCAGCAACAAGATTAGTTTGTTAG 59.141 40.000 3.36 1.20 44.50 2.34
2320 3654 3.648067 TGCTACTCCCTATTGAGAATGGG 59.352 47.826 0.00 0.00 39.10 4.00
2971 4359 8.620116 AAATAAATTAAGCAAACCAACAGCAT 57.380 26.923 0.00 0.00 0.00 3.79
3037 4426 2.702270 AGGCTCCCCTTCAAATTTGT 57.298 45.000 17.47 0.00 38.74 2.83
3051 4440 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
3052 4441 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
3053 4442 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
3054 4443 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
3055 4444 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
3056 4445 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
3057 4446 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
3058 4447 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
3062 4451 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
3063 4452 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
3064 4453 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
3065 4454 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
3066 4455 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
3067 4456 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
3068 4457 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
3069 4458 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
3070 4459 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3071 4460 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3072 4461 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3073 4462 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3074 4463 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3075 4464 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3076 4465 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3077 4466 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3088 4477 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
3089 4478 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
3090 4479 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
3091 4480 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
3092 4481 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
3093 4482 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
3094 4483 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
3095 4484 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
3096 4485 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
3097 4486 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
3098 4487 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
3099 4488 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3100 4489 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3101 4490 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3102 4491 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3103 4492 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3104 4493 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3105 4494 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3106 4495 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3107 4496 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
3108 4497 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
3109 4498 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
3110 4499 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3122 4511 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3123 4512 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3124 4513 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3125 4514 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3126 4515 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3127 4516 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3128 4517 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3129 4518 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3130 4519 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3131 4520 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3132 4521 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3133 4522 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3134 4523 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
3135 4524 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
3136 4525 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
3137 4526 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
3138 4527 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
3139 4528 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
3140 4529 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
3141 4530 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
3142 4531 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
3143 4532 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
3144 4533 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
3145 4534 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
3146 4535 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
3147 4536 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
3148 4537 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
3158 4547 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3159 4548 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3160 4549 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3161 4550 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3162 4551 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3163 4552 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3164 4553 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3165 4554 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3171 4560 4.735599 AGGGTCGGGGAAGGGTCC 62.736 72.222 0.00 0.00 44.10 4.46
3172 4561 3.400054 CAGGGTCGGGGAAGGGTC 61.400 72.222 0.00 0.00 0.00 4.46
3187 4576 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3190 4579 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3191 4580 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3192 4581 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3193 4582 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3195 4584 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
3196 4585 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
3197 4586 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
3198 4587 1.821332 GCCCAGTGCATGTAGCTCC 60.821 63.158 0.00 0.00 45.94 4.70
3199 4588 1.094073 CAGCCCAGTGCATGTAGCTC 61.094 60.000 0.00 0.00 45.94 4.09
3200 4589 1.077930 CAGCCCAGTGCATGTAGCT 60.078 57.895 0.00 0.00 45.94 3.32
3201 4590 2.768492 GCAGCCCAGTGCATGTAGC 61.768 63.158 0.00 0.00 43.41 3.58
3202 4591 2.117156 GGCAGCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 45.93 2.74
3203 4592 2.045045 GGCAGCCCAGTGCATGTA 60.045 61.111 0.00 0.00 45.93 2.29
3231 4620 7.486870 GTCACTACACGGAAGAAATTTGTTTTT 59.513 33.333 1.67 0.00 0.00 1.94
3232 4621 6.970613 GTCACTACACGGAAGAAATTTGTTTT 59.029 34.615 1.67 0.00 0.00 2.43
3233 4622 6.094325 TGTCACTACACGGAAGAAATTTGTTT 59.906 34.615 1.67 0.00 0.00 2.83
3234 4623 5.587043 TGTCACTACACGGAAGAAATTTGTT 59.413 36.000 0.00 0.00 0.00 2.83
3545 4980 7.766278 ACTTGTATCAAGTATCCTGTTGATCAC 59.234 37.037 12.53 0.00 41.47 3.06
3999 5459 3.873361 GGATCGACTGAAGCAATCATTCA 59.127 43.478 9.47 0.00 37.53 2.57
4418 5880 8.616076 GCAAAATACTGAATAGTAACAGATGCT 58.384 33.333 12.56 0.00 42.37 3.79
4791 6253 2.224719 GGTGATGATCCAGAATCCCCAG 60.225 54.545 0.00 0.00 33.01 4.45
4795 6257 2.103094 TGTCGGTGATGATCCAGAATCC 59.897 50.000 0.00 0.00 33.01 3.01
4818 6280 3.149196 AGTTGGAATGAAGCAACGACAT 58.851 40.909 0.00 0.00 33.26 3.06
5001 6463 1.276421 ACACTCGAATCAGGACCCTTG 59.724 52.381 0.00 0.00 0.00 3.61
5059 6521 5.530915 TGTAAGATCTGATAAAAATGGGGCG 59.469 40.000 0.00 0.00 0.00 6.13
5226 6688 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5228 6690 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
5229 6691 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
5230 6692 9.379791 ACTAGAAAGACAAATATTTAGGAACGG 57.620 33.333 0.00 0.00 0.00 4.44
5242 6704 8.571336 CCTGTTGAAATCACTAGAAAGACAAAT 58.429 33.333 0.00 0.00 0.00 2.32
5243 6705 7.556275 ACCTGTTGAAATCACTAGAAAGACAAA 59.444 33.333 0.00 0.00 0.00 2.83
5244 6706 7.012327 CACCTGTTGAAATCACTAGAAAGACAA 59.988 37.037 0.00 0.00 0.00 3.18
5245 6707 6.483307 CACCTGTTGAAATCACTAGAAAGACA 59.517 38.462 0.00 0.00 0.00 3.41
5246 6708 6.706270 TCACCTGTTGAAATCACTAGAAAGAC 59.294 38.462 0.00 0.00 0.00 3.01
5247 6709 6.706270 GTCACCTGTTGAAATCACTAGAAAGA 59.294 38.462 0.00 0.00 35.39 2.52
5248 6710 6.708054 AGTCACCTGTTGAAATCACTAGAAAG 59.292 38.462 0.00 0.00 35.39 2.62
5249 6711 6.591935 AGTCACCTGTTGAAATCACTAGAAA 58.408 36.000 0.00 0.00 35.39 2.52
5250 6712 6.174720 AGTCACCTGTTGAAATCACTAGAA 57.825 37.500 0.00 0.00 35.39 2.10
5251 6713 5.808366 AGTCACCTGTTGAAATCACTAGA 57.192 39.130 0.00 0.00 35.39 2.43
5252 6714 6.455647 TGTAGTCACCTGTTGAAATCACTAG 58.544 40.000 0.00 0.00 35.39 2.57
5253 6715 6.413783 TGTAGTCACCTGTTGAAATCACTA 57.586 37.500 0.00 0.00 35.39 2.74
5254 6716 5.290493 TGTAGTCACCTGTTGAAATCACT 57.710 39.130 0.00 0.00 35.39 3.41
5255 6717 6.183360 CGTATGTAGTCACCTGTTGAAATCAC 60.183 42.308 0.00 0.00 35.39 3.06
5256 6718 5.867174 CGTATGTAGTCACCTGTTGAAATCA 59.133 40.000 0.00 0.00 35.39 2.57
5257 6719 6.097356 TCGTATGTAGTCACCTGTTGAAATC 58.903 40.000 0.00 0.00 35.39 2.17
5258 6720 6.032956 TCGTATGTAGTCACCTGTTGAAAT 57.967 37.500 0.00 0.00 35.39 2.17
5259 6721 5.456548 TCGTATGTAGTCACCTGTTGAAA 57.543 39.130 0.00 0.00 35.39 2.69
5260 6722 5.010314 ACTTCGTATGTAGTCACCTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
5261 6723 4.521639 ACTTCGTATGTAGTCACCTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
5262 6724 4.806330 ACTTCGTATGTAGTCACCTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
5263 6725 6.579666 TTACTTCGTATGTAGTCACCTGTT 57.420 37.500 0.00 0.00 0.00 3.16
5264 6726 6.579666 TTTACTTCGTATGTAGTCACCTGT 57.420 37.500 0.00 0.00 0.00 4.00
5265 6727 7.758076 TCATTTTACTTCGTATGTAGTCACCTG 59.242 37.037 0.00 0.00 0.00 4.00
5266 6728 7.833786 TCATTTTACTTCGTATGTAGTCACCT 58.166 34.615 0.00 0.00 0.00 4.00
5267 6729 7.758528 ACTCATTTTACTTCGTATGTAGTCACC 59.241 37.037 0.00 0.00 0.00 4.02
5268 6730 8.584600 CACTCATTTTACTTCGTATGTAGTCAC 58.415 37.037 0.00 0.00 0.00 3.67
5269 6731 8.517056 TCACTCATTTTACTTCGTATGTAGTCA 58.483 33.333 0.00 0.00 0.00 3.41
5270 6732 8.906636 TCACTCATTTTACTTCGTATGTAGTC 57.093 34.615 0.00 0.00 0.00 2.59
5271 6733 9.871238 ATTCACTCATTTTACTTCGTATGTAGT 57.129 29.630 0.00 0.00 0.00 2.73
5277 6739 9.350357 GTGTAGATTCACTCATTTTACTTCGTA 57.650 33.333 0.00 0.00 35.68 3.43
5278 6740 8.088981 AGTGTAGATTCACTCATTTTACTTCGT 58.911 33.333 0.00 0.00 44.07 3.85
5279 6741 8.467402 AGTGTAGATTCACTCATTTTACTTCG 57.533 34.615 0.00 0.00 44.07 3.79
5310 6772 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
5312 6774 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
5313 6775 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
5314 6776 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
5315 6777 8.323567 TGACTACCACATACGGATGTATATAGA 58.676 37.037 22.62 7.05 44.82 1.98
5316 6778 8.502105 TGACTACCACATACGGATGTATATAG 57.498 38.462 14.23 16.35 44.82 1.31
5317 6779 9.470399 AATGACTACCACATACGGATGTATATA 57.530 33.333 14.23 5.36 44.82 0.86
5318 6780 7.956328 ATGACTACCACATACGGATGTATAT 57.044 36.000 14.23 4.37 44.82 0.86
5319 6781 7.770366 AATGACTACCACATACGGATGTATA 57.230 36.000 14.23 8.27 44.82 1.47
5320 6782 6.665992 AATGACTACCACATACGGATGTAT 57.334 37.500 14.23 7.46 44.82 2.29
5321 6783 6.097129 TCAAATGACTACCACATACGGATGTA 59.903 38.462 14.23 0.00 44.82 2.29
5323 6785 5.356426 TCAAATGACTACCACATACGGATG 58.644 41.667 5.94 5.94 39.16 3.51
5324 6786 5.607939 TCAAATGACTACCACATACGGAT 57.392 39.130 0.00 0.00 0.00 4.18
5325 6787 5.408880 TTCAAATGACTACCACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
5326 6788 6.538742 AGATTTCAAATGACTACCACATACGG 59.461 38.462 0.00 0.00 0.00 4.02
5327 6789 7.539712 AGATTTCAAATGACTACCACATACG 57.460 36.000 0.00 0.00 0.00 3.06
5354 6816 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
5355 6817 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
5356 6818 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5357 6819 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5358 6820 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5359 6821 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5360 6822 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5361 6823 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5362 6824 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5363 6825 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
5364 6826 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
5365 6827 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
5366 6828 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
5367 6829 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
5368 6830 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
5369 6831 2.042162 ACTTGTACTCCCTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
5370 6832 1.203149 ACTTGTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
5371 6833 1.204231 GACTTGTACTCCCTCCGTTCC 59.796 57.143 0.00 0.00 0.00 3.62
5372 6834 1.891150 TGACTTGTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
5373 6835 2.005370 TGACTTGTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
5374 6836 1.825474 CATGACTTGTACTCCCTCCGT 59.175 52.381 0.00 0.00 0.00 4.69
5375 6837 1.137086 CCATGACTTGTACTCCCTCCG 59.863 57.143 0.00 0.00 0.00 4.63
5376 6838 2.188817 ACCATGACTTGTACTCCCTCC 58.811 52.381 0.00 0.00 0.00 4.30
5377 6839 3.983044 AACCATGACTTGTACTCCCTC 57.017 47.619 0.00 0.00 0.00 4.30
5378 6840 4.724279 AAAACCATGACTTGTACTCCCT 57.276 40.909 0.00 0.00 0.00 4.20
5379 6841 6.263617 TGTTAAAAACCATGACTTGTACTCCC 59.736 38.462 0.00 0.00 0.00 4.30
5380 6842 7.266922 TGTTAAAAACCATGACTTGTACTCC 57.733 36.000 0.00 0.00 0.00 3.85
5381 6843 9.394477 GAATGTTAAAAACCATGACTTGTACTC 57.606 33.333 0.00 0.00 0.00 2.59
5382 6844 8.908903 TGAATGTTAAAAACCATGACTTGTACT 58.091 29.630 0.00 0.00 0.00 2.73
5383 6845 9.691362 ATGAATGTTAAAAACCATGACTTGTAC 57.309 29.630 0.00 0.00 0.00 2.90
5384 6846 9.689976 CATGAATGTTAAAAACCATGACTTGTA 57.310 29.630 0.00 0.00 33.28 2.41
5395 6857 4.568956 AGGGCAGCATGAATGTTAAAAAC 58.431 39.130 0.00 0.00 39.69 2.43
5976 7441 1.535896 GTCTATACGCCGCTGATCTCA 59.464 52.381 0.00 0.00 0.00 3.27
6007 7472 1.416030 TGCTGCTCCAGAACAACTGTA 59.584 47.619 0.00 0.00 44.40 2.74
6306 7777 1.357420 TCAATAACATGTGGGCCCAGT 59.643 47.619 29.55 18.26 0.00 4.00
6440 8090 3.506067 AGCTTTACAATCTCCGGTTTTGG 59.494 43.478 0.00 0.00 0.00 3.28
6683 8333 2.021457 GGAGAGAAGAAGCGCTAGAGT 58.979 52.381 12.05 0.00 0.00 3.24
6843 8493 0.391597 TTCGGGTTTCTTCTCAGCGT 59.608 50.000 0.00 0.00 0.00 5.07
6878 8528 3.418047 CAACTTCGGGTTTATTCTGGGT 58.582 45.455 0.00 0.00 35.74 4.51
6897 8547 2.762887 CTGGTAGAGACATCAGAGGCAA 59.237 50.000 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.