Multiple sequence alignment - TraesCS4B01G126500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G126500 chr4B 100.000 8317 0 0 1 8317 161629689 161621373 0.000000e+00 15359.0
1 TraesCS4B01G126500 chr4B 91.069 851 67 9 1 848 419609609 419610453 0.000000e+00 1142.0
2 TraesCS4B01G126500 chr4B 79.473 1062 161 42 866 1895 163756085 163757121 0.000000e+00 701.0
3 TraesCS4B01G126500 chr4B 96.135 207 7 1 8112 8317 641406722 641406516 3.720000e-88 337.0
4 TraesCS4B01G126500 chr4B 77.796 599 90 32 6546 7139 163804464 163805024 6.220000e-86 329.0
5 TraesCS4B01G126500 chr4B 86.339 183 23 2 3670 3851 163759335 163759516 1.830000e-46 198.0
6 TraesCS4B01G126500 chr4B 93.103 116 6 2 5626 5741 161623951 161623838 1.440000e-37 169.0
7 TraesCS4B01G126500 chr4B 93.103 116 6 2 5739 5852 161624064 161623949 1.440000e-37 169.0
8 TraesCS4B01G126500 chr4B 83.425 181 28 2 3430 3610 163759084 163759262 5.160000e-37 167.0
9 TraesCS4B01G126500 chr4A 96.069 3282 64 16 858 4124 428289972 428286741 0.000000e+00 5286.0
10 TraesCS4B01G126500 chr4A 97.694 2385 44 9 4123 6503 428286659 428284282 0.000000e+00 4089.0
11 TraesCS4B01G126500 chr4A 94.183 1083 35 11 6529 7605 428264165 428263105 0.000000e+00 1626.0
12 TraesCS4B01G126500 chr4A 80.790 937 100 39 987 1895 429229232 429230116 0.000000e+00 660.0
13 TraesCS4B01G126500 chr4A 79.065 492 73 18 3404 3888 429231909 429232377 2.250000e-80 311.0
14 TraesCS4B01G126500 chr4A 77.129 599 95 34 6546 7139 429242882 429243443 8.110000e-80 309.0
15 TraesCS4B01G126500 chr4A 90.972 144 11 1 7840 7981 428260120 428259977 8.520000e-45 193.0
16 TraesCS4B01G126500 chr4A 93.103 116 5 2 5626 5741 428285048 428284936 5.160000e-37 167.0
17 TraesCS4B01G126500 chr4A 91.379 116 5 3 5739 5852 428285158 428285046 4.020000e-33 154.0
18 TraesCS4B01G126500 chr4A 97.500 80 1 1 7607 7686 428261524 428261446 1.460000e-27 135.0
19 TraesCS4B01G126500 chr4A 86.076 79 5 6 6433 6511 603452755 603452683 6.920000e-11 80.5
20 TraesCS4B01G126500 chr4A 97.500 40 1 0 6502 6541 428284120 428284081 1.500000e-07 69.4
21 TraesCS4B01G126500 chr4A 100.000 29 0 0 8082 8110 428259936 428259908 4.000000e-03 54.7
22 TraesCS4B01G126500 chr4D 97.775 2742 56 5 4262 6998 133458491 133461232 0.000000e+00 4721.0
23 TraesCS4B01G126500 chr4D 97.080 1952 33 15 2335 4267 133452575 133454521 0.000000e+00 3267.0
24 TraesCS4B01G126500 chr4D 90.015 661 33 9 7002 7654 133467661 133468296 0.000000e+00 824.0
25 TraesCS4B01G126500 chr4D 78.241 1080 166 42 858 1895 132964330 132963278 5.480000e-176 628.0
26 TraesCS4B01G126500 chr4D 85.484 186 25 2 3670 3854 132961214 132961030 8.520000e-45 193.0
27 TraesCS4B01G126500 chr4D 96.460 113 2 2 5739 5849 133459858 133459970 1.430000e-42 185.0
28 TraesCS4B01G126500 chr4D 94.690 113 4 2 5626 5738 133459971 133460081 3.090000e-39 174.0
29 TraesCS4B01G126500 chr1B 90.867 854 50 7 1 848 683213296 683214127 0.000000e+00 1120.0
30 TraesCS4B01G126500 chr2B 89.798 843 68 17 13 848 99574004 99573173 0.000000e+00 1064.0
31 TraesCS4B01G126500 chr2B 96.651 209 7 0 8109 8317 483448794 483449002 1.720000e-91 348.0
32 TraesCS4B01G126500 chr2B 95.714 210 9 0 8108 8317 704875062 704875271 1.030000e-88 339.0
33 TraesCS4B01G126500 chr2B 95.714 210 8 1 8109 8317 218294812 218294603 3.720000e-88 337.0
34 TraesCS4B01G126500 chr2B 86.486 74 10 0 7021 7094 594837876 594837949 1.920000e-11 82.4
35 TraesCS4B01G126500 chr3A 87.882 850 99 3 1 848 1892633 1893480 0.000000e+00 996.0
36 TraesCS4B01G126500 chr3A 82.609 621 85 19 189 802 707729071 707729675 2.060000e-145 527.0
37 TraesCS4B01G126500 chr2D 86.987 853 101 7 1 848 534593179 534594026 0.000000e+00 952.0
38 TraesCS4B01G126500 chr2D 87.879 66 8 0 7021 7086 506784470 506784535 2.490000e-10 78.7
39 TraesCS4B01G126500 chr2D 86.154 65 7 2 7774 7836 539879509 539879445 1.500000e-07 69.4
40 TraesCS4B01G126500 chr2D 94.595 37 2 0 7768 7804 69249122 69249086 3.240000e-04 58.4
41 TraesCS4B01G126500 chr3B 89.986 699 65 5 4 698 532905697 532906394 0.000000e+00 898.0
42 TraesCS4B01G126500 chr3B 90.278 72 2 5 6433 6504 181286938 181287004 1.150000e-13 89.8
43 TraesCS4B01G126500 chr5B 86.207 783 91 15 13 787 290036297 290037070 0.000000e+00 832.0
44 TraesCS4B01G126500 chr5B 84.226 672 84 13 192 848 703308216 703307552 1.180000e-177 634.0
45 TraesCS4B01G126500 chr5B 95.694 209 8 1 8109 8317 60593112 60593319 1.340000e-87 335.0
46 TraesCS4B01G126500 chr5B 94.595 37 2 0 7768 7804 31114672 31114636 3.240000e-04 58.4
47 TraesCS4B01G126500 chr6B 88.562 577 24 13 7182 7740 132433505 132432953 0.000000e+00 662.0
48 TraesCS4B01G126500 chr6B 96.172 209 8 0 8109 8317 663020648 663020440 7.990000e-90 342.0
49 TraesCS4B01G126500 chr6A 93.857 293 11 3 7443 7731 74972594 74972305 1.280000e-117 435.0
50 TraesCS4B01G126500 chr6A 96.172 209 8 0 8109 8317 2174807 2175015 7.990000e-90 342.0
51 TraesCS4B01G126500 chr6A 96.172 209 7 1 8110 8317 5957705 5957497 2.880000e-89 340.0
52 TraesCS4B01G126500 chr6A 91.358 81 7 0 7832 7912 74939255 74939175 2.450000e-20 111.0
53 TraesCS4B01G126500 chrUn 95.349 215 9 1 8103 8317 348465222 348465435 2.880000e-89 340.0
54 TraesCS4B01G126500 chrUn 86.667 60 6 2 7774 7831 99244883 99244824 1.940000e-06 65.8
55 TraesCS4B01G126500 chrUn 97.059 34 1 0 7768 7801 76767085 76767118 3.240000e-04 58.4
56 TraesCS4B01G126500 chr5D 87.317 205 24 2 1 203 461575696 461575900 5.020000e-57 233.0
57 TraesCS4B01G126500 chr7B 86.275 204 26 2 1 203 721492867 721492665 3.910000e-53 220.0
58 TraesCS4B01G126500 chr7B 89.394 66 6 1 7771 7835 704280842 704280907 1.920000e-11 82.4
59 TraesCS4B01G126500 chr6D 88.961 154 13 1 7832 7981 58896236 58896083 3.960000e-43 187.0
60 TraesCS4B01G126500 chr6D 88.462 104 4 1 7639 7734 58899612 58899509 1.470000e-22 119.0
61 TraesCS4B01G126500 chr6D 84.685 111 9 4 8002 8112 58896087 58895985 4.110000e-18 104.0
62 TraesCS4B01G126500 chr5A 91.139 79 3 4 6433 6511 109953096 109953170 4.110000e-18 104.0
63 TraesCS4B01G126500 chr5A 97.059 34 1 0 7768 7801 99602191 99602224 3.240000e-04 58.4
64 TraesCS4B01G126500 chr5A 94.595 37 2 0 7768 7804 333448903 333448867 3.240000e-04 58.4
65 TraesCS4B01G126500 chr7D 91.026 78 3 4 6434 6511 484423866 484423939 1.480000e-17 102.0
66 TraesCS4B01G126500 chr1D 89.744 78 4 4 6434 6511 211688916 211688843 6.870000e-16 97.1
67 TraesCS4B01G126500 chr3D 88.889 81 4 5 6431 6511 346845287 346845362 2.470000e-15 95.3
68 TraesCS4B01G126500 chr7A 88.312 77 4 5 6430 6506 126584131 126584060 4.140000e-13 87.9
69 TraesCS4B01G126500 chr2A 95.455 44 2 0 7021 7064 651601818 651601861 4.160000e-08 71.3
70 TraesCS4B01G126500 chr1A 94.595 37 2 0 7768 7804 487034000 487033964 3.240000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G126500 chr4B 161621373 161629689 8316 True 15359.000000 15359 100.00000 1 8317 1 chr4B.!!$R1 8316
1 TraesCS4B01G126500 chr4B 419609609 419610453 844 False 1142.000000 1142 91.06900 1 848 1 chr4B.!!$F2 847
2 TraesCS4B01G126500 chr4B 163756085 163759516 3431 False 355.333333 701 83.07900 866 3851 3 chr4B.!!$F3 2985
3 TraesCS4B01G126500 chr4B 163804464 163805024 560 False 329.000000 329 77.79600 6546 7139 1 chr4B.!!$F1 593
4 TraesCS4B01G126500 chr4A 428284081 428289972 5891 True 1953.080000 5286 95.14900 858 6541 5 chr4A.!!$R3 5683
5 TraesCS4B01G126500 chr4A 428259908 428264165 4257 True 502.175000 1626 95.66375 6529 8110 4 chr4A.!!$R2 1581
6 TraesCS4B01G126500 chr4A 429229232 429232377 3145 False 485.500000 660 79.92750 987 3888 2 chr4A.!!$F2 2901
7 TraesCS4B01G126500 chr4A 429242882 429243443 561 False 309.000000 309 77.12900 6546 7139 1 chr4A.!!$F1 593
8 TraesCS4B01G126500 chr4D 133452575 133461232 8657 False 2086.750000 4721 96.50125 2335 6998 4 chr4D.!!$F2 4663
9 TraesCS4B01G126500 chr4D 133467661 133468296 635 False 824.000000 824 90.01500 7002 7654 1 chr4D.!!$F1 652
10 TraesCS4B01G126500 chr4D 132961030 132964330 3300 True 410.500000 628 81.86250 858 3854 2 chr4D.!!$R1 2996
11 TraesCS4B01G126500 chr1B 683213296 683214127 831 False 1120.000000 1120 90.86700 1 848 1 chr1B.!!$F1 847
12 TraesCS4B01G126500 chr2B 99573173 99574004 831 True 1064.000000 1064 89.79800 13 848 1 chr2B.!!$R1 835
13 TraesCS4B01G126500 chr3A 1892633 1893480 847 False 996.000000 996 87.88200 1 848 1 chr3A.!!$F1 847
14 TraesCS4B01G126500 chr3A 707729071 707729675 604 False 527.000000 527 82.60900 189 802 1 chr3A.!!$F2 613
15 TraesCS4B01G126500 chr2D 534593179 534594026 847 False 952.000000 952 86.98700 1 848 1 chr2D.!!$F2 847
16 TraesCS4B01G126500 chr3B 532905697 532906394 697 False 898.000000 898 89.98600 4 698 1 chr3B.!!$F2 694
17 TraesCS4B01G126500 chr5B 290036297 290037070 773 False 832.000000 832 86.20700 13 787 1 chr5B.!!$F2 774
18 TraesCS4B01G126500 chr5B 703307552 703308216 664 True 634.000000 634 84.22600 192 848 1 chr5B.!!$R2 656
19 TraesCS4B01G126500 chr6B 132432953 132433505 552 True 662.000000 662 88.56200 7182 7740 1 chr6B.!!$R1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 374 0.260230 TTTCTGGGTGCTGGTTCCAA 59.740 50.000 0.00 0.00 0.00 3.53 F
1451 1530 0.254462 CCTTCCTTCAAGCCCTCTCC 59.746 60.000 0.00 0.00 0.00 3.71 F
1461 1540 0.995803 AGCCCTCTCCTTTCCTTTCC 59.004 55.000 0.00 0.00 0.00 3.13 F
1463 1542 1.356059 GCCCTCTCCTTTCCTTTCCTT 59.644 52.381 0.00 0.00 0.00 3.36 F
3065 3899 1.615392 GGAAATGCTGTTGGCTCACTT 59.385 47.619 0.00 0.00 42.39 3.16 F
4464 9497 1.617018 TACCTTGCATGCTCTCGGCT 61.617 55.000 20.33 7.19 42.39 5.52 F
4758 9791 0.911769 TGGCTGTGAGATTTCCCGAT 59.088 50.000 0.00 0.00 0.00 4.18 F
5357 10393 1.135083 CGGTAGCCTTAGCATATCCCG 60.135 57.143 0.00 0.00 43.56 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 1791 0.247460 TCAGCACCATGGTCGAGAAG 59.753 55.000 16.53 3.51 0.00 2.85 R
3065 3899 0.970427 TGTGCTCCAGGAGATACGCA 60.970 55.000 21.89 12.33 0.00 5.24 R
3522 4470 3.462982 TCACACATTTTAGTGAGCACGT 58.537 40.909 0.57 0.00 42.05 4.49 R
4036 5011 3.887621 AATGTAGCTTCGCTGTTAGGA 57.112 42.857 0.00 0.00 40.10 2.94 R
4718 9751 1.891178 CAATCAAGCATGCACACTCG 58.109 50.000 21.98 0.00 0.00 4.18 R
5702 10738 0.679002 CCCTTCCCACATGCTCAGTG 60.679 60.000 0.00 0.00 36.76 3.66 R
7087 12325 2.537401 GTAAACCGTCTTCCATCTCGG 58.463 52.381 0.00 0.00 46.98 4.63 R
7883 15921 1.133790 ACTCGCGGATTACACTGGTAC 59.866 52.381 6.13 0.00 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 73 2.700407 TTTTCCCCGCACCGGTTGAT 62.700 55.000 2.97 0.00 46.80 2.57
79 90 4.081198 GGTTGATGTTTTTATCCATGCCCA 60.081 41.667 0.00 0.00 0.00 5.36
87 98 3.317455 TTATCCATGCCCATTGAAGCT 57.683 42.857 0.00 0.00 0.00 3.74
308 329 3.371591 TGTAGCAAAAACGTCGTTGTTCT 59.628 39.130 12.12 13.17 0.00 3.01
316 337 3.299340 ACGTCGTTGTTCTAGCAGAAT 57.701 42.857 0.00 0.00 36.50 2.40
323 344 4.686091 CGTTGTTCTAGCAGAATGAACTCA 59.314 41.667 0.00 0.00 39.69 3.41
353 374 0.260230 TTTCTGGGTGCTGGTTCCAA 59.740 50.000 0.00 0.00 0.00 3.53
445 468 1.073025 TTGTGGCTTGCTCCATCGT 59.927 52.632 0.00 0.00 38.57 3.73
489 512 2.338620 CGCACCGGTGTCTTCAGA 59.661 61.111 33.92 0.00 0.00 3.27
753 785 1.954382 AGAGAAGGAAAACGTTTGGGC 59.046 47.619 15.46 7.24 0.00 5.36
806 852 1.784525 CGTCAGAAAAGGAAGCGACT 58.215 50.000 0.00 0.00 0.00 4.18
848 894 0.406361 TCCGGCCCCAAACATTTACT 59.594 50.000 0.00 0.00 0.00 2.24
849 895 1.634459 TCCGGCCCCAAACATTTACTA 59.366 47.619 0.00 0.00 0.00 1.82
850 896 1.746787 CCGGCCCCAAACATTTACTAC 59.253 52.381 0.00 0.00 0.00 2.73
851 897 2.619590 CCGGCCCCAAACATTTACTACT 60.620 50.000 0.00 0.00 0.00 2.57
852 898 2.681344 CGGCCCCAAACATTTACTACTC 59.319 50.000 0.00 0.00 0.00 2.59
853 899 3.621461 CGGCCCCAAACATTTACTACTCT 60.621 47.826 0.00 0.00 0.00 3.24
854 900 4.383335 CGGCCCCAAACATTTACTACTCTA 60.383 45.833 0.00 0.00 0.00 2.43
855 901 4.880120 GGCCCCAAACATTTACTACTCTAC 59.120 45.833 0.00 0.00 0.00 2.59
856 902 4.880120 GCCCCAAACATTTACTACTCTACC 59.120 45.833 0.00 0.00 0.00 3.18
1253 1324 2.144833 TACGTTTCAGAGGCGGCGAA 62.145 55.000 12.98 0.00 0.00 4.70
1353 1424 3.479203 CACATGGCGGCCCTAGGA 61.479 66.667 17.97 0.00 0.00 2.94
1451 1530 0.254462 CCTTCCTTCAAGCCCTCTCC 59.746 60.000 0.00 0.00 0.00 3.71
1452 1531 1.284313 CTTCCTTCAAGCCCTCTCCT 58.716 55.000 0.00 0.00 0.00 3.69
1453 1532 1.632920 CTTCCTTCAAGCCCTCTCCTT 59.367 52.381 0.00 0.00 0.00 3.36
1454 1533 1.747444 TCCTTCAAGCCCTCTCCTTT 58.253 50.000 0.00 0.00 0.00 3.11
1455 1534 1.630878 TCCTTCAAGCCCTCTCCTTTC 59.369 52.381 0.00 0.00 0.00 2.62
1456 1535 1.340502 CCTTCAAGCCCTCTCCTTTCC 60.341 57.143 0.00 0.00 0.00 3.13
1457 1536 1.632920 CTTCAAGCCCTCTCCTTTCCT 59.367 52.381 0.00 0.00 0.00 3.36
1458 1537 1.747444 TCAAGCCCTCTCCTTTCCTT 58.253 50.000 0.00 0.00 0.00 3.36
1459 1538 2.065799 TCAAGCCCTCTCCTTTCCTTT 58.934 47.619 0.00 0.00 0.00 3.11
1460 1539 2.040412 TCAAGCCCTCTCCTTTCCTTTC 59.960 50.000 0.00 0.00 0.00 2.62
1461 1540 0.995803 AGCCCTCTCCTTTCCTTTCC 59.004 55.000 0.00 0.00 0.00 3.13
1462 1541 0.995803 GCCCTCTCCTTTCCTTTCCT 59.004 55.000 0.00 0.00 0.00 3.36
1463 1542 1.356059 GCCCTCTCCTTTCCTTTCCTT 59.644 52.381 0.00 0.00 0.00 3.36
1464 1543 2.225142 GCCCTCTCCTTTCCTTTCCTTT 60.225 50.000 0.00 0.00 0.00 3.11
1465 1544 3.691575 CCCTCTCCTTTCCTTTCCTTTC 58.308 50.000 0.00 0.00 0.00 2.62
1466 1545 3.562393 CCCTCTCCTTTCCTTTCCTTTCC 60.562 52.174 0.00 0.00 0.00 3.13
1467 1546 3.332187 CCTCTCCTTTCCTTTCCTTTCCT 59.668 47.826 0.00 0.00 0.00 3.36
1468 1547 4.202620 CCTCTCCTTTCCTTTCCTTTCCTT 60.203 45.833 0.00 0.00 0.00 3.36
1503 1587 7.486407 TCCTTTCCTTTCCGTAATAAGTACT 57.514 36.000 0.00 0.00 0.00 2.73
1504 1588 8.593945 TCCTTTCCTTTCCGTAATAAGTACTA 57.406 34.615 0.00 0.00 0.00 1.82
1508 1592 6.672593 TCCTTTCCGTAATAAGTACTAGGGA 58.327 40.000 0.00 0.00 31.80 4.20
1509 1593 7.125391 TCCTTTCCGTAATAAGTACTAGGGAA 58.875 38.462 11.69 11.69 39.24 3.97
1547 1666 1.944024 AGAGTAGCTCTCGTTCATCCG 59.056 52.381 0.00 0.00 46.86 4.18
1594 1713 5.288804 TGAATTTGTTTGTGCTAAGCTTCC 58.711 37.500 0.00 0.00 0.00 3.46
1672 1791 7.998542 TCAGAATGCGTATTTGGTGTGTTACC 61.999 42.308 0.00 0.00 43.17 2.85
1764 1883 6.296317 CCAATCAAGGTAGCATGGATCTCTAT 60.296 42.308 0.00 0.00 0.00 1.98
1918 2046 4.339247 TGAAGGGCGTAAGGTATACACTAC 59.661 45.833 5.01 4.60 38.28 2.73
2045 2195 3.317149 AGTTTAAACTTTCCCTTGCGTCC 59.683 43.478 15.22 0.00 35.21 4.79
2240 2437 6.665992 TCTTACTCTCAAAAGGAGCTAACA 57.334 37.500 0.00 0.00 43.70 2.41
2340 2540 4.233632 TGGATCACCATGCAGATGTAAA 57.766 40.909 3.21 0.00 41.77 2.01
2342 2542 3.947196 GGATCACCATGCAGATGTAAACA 59.053 43.478 3.21 0.00 35.97 2.83
2403 2604 6.407074 CCCTAGAATGGTTAAGTCCACAGTAG 60.407 46.154 0.00 0.00 40.51 2.57
2553 2793 7.468631 GCTCCAGTTTTCAAACATAGTCTCAAA 60.469 37.037 5.26 0.00 41.30 2.69
2554 2794 7.703328 TCCAGTTTTCAAACATAGTCTCAAAC 58.297 34.615 5.26 0.00 41.30 2.93
2761 3073 6.975197 CCAGCATACACATAATCCGACTATAG 59.025 42.308 0.00 0.00 0.00 1.31
2769 3081 8.235226 ACACATAATCCGACTATAGAATGTACG 58.765 37.037 6.78 2.67 0.00 3.67
3065 3899 1.615392 GGAAATGCTGTTGGCTCACTT 59.385 47.619 0.00 0.00 42.39 3.16
3150 3984 5.622346 TTTAAGTTTGTTTTGAGGGCCAT 57.378 34.783 6.18 0.00 0.00 4.40
3340 4175 6.542005 TCAAAAGCTTCTACTCACAATGACAA 59.458 34.615 0.00 0.00 0.00 3.18
3341 4176 6.942532 AAAGCTTCTACTCACAATGACAAA 57.057 33.333 0.00 0.00 0.00 2.83
3343 4178 4.999950 AGCTTCTACTCACAATGACAAAGG 59.000 41.667 0.00 0.00 0.00 3.11
3353 4188 3.056891 ACAATGACAAAGGCAATTACCCG 60.057 43.478 0.00 0.00 0.00 5.28
3355 4190 3.420300 TGACAAAGGCAATTACCCGTA 57.580 42.857 0.00 0.00 0.00 4.02
3358 4193 5.686753 TGACAAAGGCAATTACCCGTATAT 58.313 37.500 0.00 0.00 0.00 0.86
3359 4194 6.828788 TGACAAAGGCAATTACCCGTATATA 58.171 36.000 0.00 0.00 0.00 0.86
3361 4196 8.595421 TGACAAAGGCAATTACCCGTATATATA 58.405 33.333 0.00 0.00 0.00 0.86
3362 4197 9.609346 GACAAAGGCAATTACCCGTATATATAT 57.391 33.333 0.00 0.00 0.00 0.86
3522 4470 3.009723 GCTCTTGTTATTGCTACTGCCA 58.990 45.455 0.00 0.00 38.71 4.92
4036 5011 9.382275 GTGCATTTTTGGTCCATTTAGATTTAT 57.618 29.630 0.00 0.00 0.00 1.40
4038 5013 9.045223 GCATTTTTGGTCCATTTAGATTTATCC 57.955 33.333 0.00 0.00 0.00 2.59
4109 5084 2.646930 TGGAGAAGCATGTAATGGCTG 58.353 47.619 0.00 0.00 46.86 4.85
4131 5189 6.596497 GCTGTAGGCTATCTACTAAGTAGGAG 59.404 46.154 0.00 0.00 46.45 3.69
4229 5287 5.209818 AGTTACCGTCATCAGTTTTGAGA 57.790 39.130 0.00 0.00 36.61 3.27
4320 9353 7.287061 TGTTGGGAACTTGGGATAGTATTATG 58.713 38.462 0.00 0.00 0.00 1.90
4368 9401 4.754372 TGTTGTTCTTGACAGATCATGC 57.246 40.909 0.00 0.00 39.94 4.06
4464 9497 1.617018 TACCTTGCATGCTCTCGGCT 61.617 55.000 20.33 7.19 42.39 5.52
4758 9791 0.911769 TGGCTGTGAGATTTCCCGAT 59.088 50.000 0.00 0.00 0.00 4.18
4995 10030 9.943163 GAGCAATAAGATTTAGTTGAAAGGATC 57.057 33.333 0.00 0.00 0.00 3.36
5054 10089 6.097696 TGGTCAACTCGATATTCCTTATCACA 59.902 38.462 0.00 0.00 37.18 3.58
5136 10172 6.024552 ACATGGATTGTGGTTTATTGTCAC 57.975 37.500 0.00 0.00 37.11 3.67
5137 10173 5.538053 ACATGGATTGTGGTTTATTGTCACA 59.462 36.000 0.00 0.00 37.11 3.58
5357 10393 1.135083 CGGTAGCCTTAGCATATCCCG 60.135 57.143 0.00 0.00 43.56 5.14
5393 10429 7.923878 GGAGTAAAGGCTTCATTGTTTTTGTTA 59.076 33.333 0.00 0.00 0.00 2.41
5420 10456 3.106827 TCTGTAGTGGATGGAAGATGCA 58.893 45.455 0.00 0.00 0.00 3.96
5729 10765 3.721575 AGCATGTGGGAAGGGATTACATA 59.278 43.478 0.00 0.00 31.34 2.29
5768 10804 7.920151 CGAGTAAAAATATTCATGGCCATTTCA 59.080 33.333 17.92 2.65 0.00 2.69
6015 11053 9.219603 CTTGTTCTAGTTTATGGACTCATTGAA 57.780 33.333 0.00 0.00 34.96 2.69
6112 11150 2.564771 TGGAAATTATGCTCTCTGCGG 58.435 47.619 0.00 0.00 46.63 5.69
6403 11443 2.554032 CACCACAATGAAGTCCAGGAAC 59.446 50.000 0.00 0.00 0.00 3.62
6489 11529 4.396357 AAGACCGATCTGATAGGGAGAT 57.604 45.455 19.10 0.11 34.48 2.75
7087 12325 3.056328 GTTGGAGCCTGGGAACGC 61.056 66.667 0.00 0.00 0.00 4.84
7103 12341 2.893398 GCCGAGATGGAAGACGGT 59.107 61.111 0.00 0.00 45.91 4.83
7129 12367 4.184629 CGGTATCCTCTTTCTTCCTGTTG 58.815 47.826 0.00 0.00 0.00 3.33
7303 12557 5.359009 AGTCCATGAAGATATGTGGCAAAAG 59.641 40.000 0.00 0.00 0.00 2.27
7403 12659 6.992063 ATATACTCTTGCCAGAAACTTGTG 57.008 37.500 0.00 0.00 0.00 3.33
7404 12660 3.281727 ACTCTTGCCAGAAACTTGTGA 57.718 42.857 0.00 0.00 0.00 3.58
7441 12705 2.223971 GGTCCACTCACTGAAGAAACGA 60.224 50.000 0.00 0.00 0.00 3.85
7740 14588 5.989777 TGTGTTTGCCTCTCTTTACTTACTC 59.010 40.000 0.00 0.00 0.00 2.59
7742 14590 4.820894 TTGCCTCTCTTTACTTACTCCC 57.179 45.455 0.00 0.00 0.00 4.30
7744 14592 4.426704 TGCCTCTCTTTACTTACTCCCTT 58.573 43.478 0.00 0.00 0.00 3.95
7745 14593 4.466726 TGCCTCTCTTTACTTACTCCCTTC 59.533 45.833 0.00 0.00 0.00 3.46
7746 14594 4.440387 GCCTCTCTTTACTTACTCCCTTCG 60.440 50.000 0.00 0.00 0.00 3.79
7747 14595 4.705991 CCTCTCTTTACTTACTCCCTTCGT 59.294 45.833 0.00 0.00 0.00 3.85
7748 14596 5.163632 CCTCTCTTTACTTACTCCCTTCGTC 60.164 48.000 0.00 0.00 0.00 4.20
7749 14597 5.568392 TCTCTTTACTTACTCCCTTCGTCT 58.432 41.667 0.00 0.00 0.00 4.18
7750 14598 5.415077 TCTCTTTACTTACTCCCTTCGTCTG 59.585 44.000 0.00 0.00 0.00 3.51
7752 14600 5.771666 TCTTTACTTACTCCCTTCGTCTGAA 59.228 40.000 0.00 0.00 0.00 3.02
7754 14602 4.950205 ACTTACTCCCTTCGTCTGAAAA 57.050 40.909 0.00 0.00 32.66 2.29
7755 14603 5.286267 ACTTACTCCCTTCGTCTGAAAAA 57.714 39.130 0.00 0.00 32.66 1.94
7775 14623 4.551702 AAAACTTACCCCCATTTGATGC 57.448 40.909 0.00 0.00 0.00 3.91
7776 14624 3.473113 AACTTACCCCCATTTGATGCT 57.527 42.857 0.00 0.00 0.00 3.79
7778 14626 4.170468 ACTTACCCCCATTTGATGCTAG 57.830 45.455 0.00 0.00 0.00 3.42
7779 14627 3.785887 ACTTACCCCCATTTGATGCTAGA 59.214 43.478 0.00 0.00 0.00 2.43
7780 14628 4.416848 ACTTACCCCCATTTGATGCTAGAT 59.583 41.667 0.00 0.00 0.00 1.98
7781 14629 5.610982 ACTTACCCCCATTTGATGCTAGATA 59.389 40.000 0.00 0.00 0.00 1.98
7782 14630 4.373156 ACCCCCATTTGATGCTAGATAC 57.627 45.455 0.00 0.00 0.00 2.24
7784 14632 4.354987 ACCCCCATTTGATGCTAGATACAT 59.645 41.667 0.00 0.00 0.00 2.29
7786 14634 5.416952 CCCCCATTTGATGCTAGATACATTC 59.583 44.000 0.00 0.00 0.00 2.67
7787 14635 6.005823 CCCCATTTGATGCTAGATACATTCA 58.994 40.000 0.00 0.00 0.00 2.57
7788 14636 6.662234 CCCCATTTGATGCTAGATACATTCAT 59.338 38.462 0.00 0.00 0.00 2.57
7789 14637 7.177921 CCCCATTTGATGCTAGATACATTCATT 59.822 37.037 0.00 0.00 0.00 2.57
7790 14638 8.582437 CCCATTTGATGCTAGATACATTCATTT 58.418 33.333 0.00 0.00 0.00 2.32
7794 14642 7.974482 TGATGCTAGATACATTCATTTGAGG 57.026 36.000 0.00 0.00 0.00 3.86
7795 14643 6.938596 TGATGCTAGATACATTCATTTGAGGG 59.061 38.462 0.00 0.00 0.00 4.30
7796 14644 6.499106 TGCTAGATACATTCATTTGAGGGA 57.501 37.500 0.00 0.00 0.00 4.20
7797 14645 7.083062 TGCTAGATACATTCATTTGAGGGAT 57.917 36.000 0.00 0.00 0.00 3.85
7798 14646 8.206126 TGCTAGATACATTCATTTGAGGGATA 57.794 34.615 0.00 0.00 0.00 2.59
7805 14653 7.592885 ACATTCATTTGAGGGATAAGATTGG 57.407 36.000 0.00 0.00 0.00 3.16
7806 14654 6.552350 ACATTCATTTGAGGGATAAGATTGGG 59.448 38.462 0.00 0.00 0.00 4.12
7808 14656 6.339999 TCATTTGAGGGATAAGATTGGGAA 57.660 37.500 0.00 0.00 0.00 3.97
7809 14657 6.367983 TCATTTGAGGGATAAGATTGGGAAG 58.632 40.000 0.00 0.00 0.00 3.46
7813 14661 3.134471 AGGGATAAGATTGGGAAGGCTT 58.866 45.455 0.00 0.00 0.00 4.35
7815 14663 4.016199 AGGGATAAGATTGGGAAGGCTTTT 60.016 41.667 0.00 0.00 0.00 2.27
7816 14664 4.716784 GGGATAAGATTGGGAAGGCTTTTT 59.283 41.667 0.00 0.00 0.00 1.94
7817 14665 5.163405 GGGATAAGATTGGGAAGGCTTTTTC 60.163 44.000 0.00 0.00 0.00 2.29
7818 14666 3.942130 AAGATTGGGAAGGCTTTTTCG 57.058 42.857 0.00 0.00 0.00 3.46
7819 14667 3.154827 AGATTGGGAAGGCTTTTTCGA 57.845 42.857 0.00 0.00 0.00 3.71
7820 14668 3.496331 AGATTGGGAAGGCTTTTTCGAA 58.504 40.909 0.00 0.00 0.00 3.71
7821 14669 3.255888 AGATTGGGAAGGCTTTTTCGAAC 59.744 43.478 0.00 0.00 0.00 3.95
7823 14671 2.379972 TGGGAAGGCTTTTTCGAACAA 58.620 42.857 0.00 0.00 0.00 2.83
7825 14673 2.288213 GGGAAGGCTTTTTCGAACAAGG 60.288 50.000 22.00 10.70 0.00 3.61
7826 14674 2.288213 GGAAGGCTTTTTCGAACAAGGG 60.288 50.000 22.00 3.07 0.00 3.95
7827 14675 2.358322 AGGCTTTTTCGAACAAGGGA 57.642 45.000 22.00 0.00 0.00 4.20
7828 14676 2.230660 AGGCTTTTTCGAACAAGGGAG 58.769 47.619 22.00 1.83 0.00 4.30
7829 14677 1.954382 GGCTTTTTCGAACAAGGGAGT 59.046 47.619 22.00 0.00 0.00 3.85
7830 14678 3.143728 GGCTTTTTCGAACAAGGGAGTA 58.856 45.455 22.00 0.00 0.00 2.59
7831 14679 3.058432 GGCTTTTTCGAACAAGGGAGTAC 60.058 47.826 22.00 7.21 0.00 2.73
7834 14682 5.682943 TTTTTCGAACAAGGGAGTACATG 57.317 39.130 0.00 0.00 0.00 3.21
7837 14685 3.104512 TCGAACAAGGGAGTACATGGAT 58.895 45.455 0.00 0.00 0.00 3.41
7838 14686 3.118775 TCGAACAAGGGAGTACATGGATG 60.119 47.826 0.00 0.00 0.00 3.51
7850 15888 3.492102 ACATGGATGGAAGATTACCGG 57.508 47.619 0.00 0.00 0.00 5.28
7904 15942 0.606604 ACCAGTGTAATCCGCGAGTT 59.393 50.000 8.23 4.17 0.00 3.01
7937 15975 6.849305 CGAGTTACACTGTTTTATTGTGAACC 59.151 38.462 0.00 0.00 35.83 3.62
7943 15981 6.133392 CACTGTTTTATTGTGAACCGTACTG 58.867 40.000 0.00 0.00 33.95 2.74
7963 16001 2.367241 TGTTCACCCTTTCGTCTCATCA 59.633 45.455 0.00 0.00 0.00 3.07
7977 16017 4.094887 CGTCTCATCAACAAGGGTTTATGG 59.905 45.833 0.00 0.00 38.54 2.74
7981 16021 5.579047 TCATCAACAAGGGTTTATGGATGT 58.421 37.500 0.00 0.00 38.54 3.06
7982 16022 5.652014 TCATCAACAAGGGTTTATGGATGTC 59.348 40.000 0.00 0.00 38.54 3.06
7983 16023 5.255397 TCAACAAGGGTTTATGGATGTCT 57.745 39.130 0.00 0.00 34.21 3.41
7984 16024 5.640147 TCAACAAGGGTTTATGGATGTCTT 58.360 37.500 0.00 0.00 34.21 3.01
7985 16025 5.710099 TCAACAAGGGTTTATGGATGTCTTC 59.290 40.000 0.00 0.00 34.21 2.87
7986 16026 4.261801 ACAAGGGTTTATGGATGTCTTCG 58.738 43.478 0.00 0.00 0.00 3.79
7987 16027 2.919228 AGGGTTTATGGATGTCTTCGC 58.081 47.619 0.00 0.00 0.00 4.70
7988 16028 2.238646 AGGGTTTATGGATGTCTTCGCA 59.761 45.455 0.00 0.00 0.00 5.10
7989 16029 3.013921 GGGTTTATGGATGTCTTCGCAA 58.986 45.455 0.00 0.00 0.00 4.85
7990 16030 3.442273 GGGTTTATGGATGTCTTCGCAAA 59.558 43.478 0.00 0.00 0.00 3.68
7991 16031 4.082463 GGGTTTATGGATGTCTTCGCAAAA 60.082 41.667 0.00 0.00 0.00 2.44
7992 16032 5.465935 GGTTTATGGATGTCTTCGCAAAAA 58.534 37.500 0.00 0.00 0.00 1.94
8025 16065 3.911868 TGAAAAGAAAATCATGGGTGCG 58.088 40.909 0.00 0.00 0.00 5.34
8051 16091 4.101448 CCGGCCTCCCACCAAGAG 62.101 72.222 0.00 0.00 0.00 2.85
8052 16092 3.003173 CGGCCTCCCACCAAGAGA 61.003 66.667 0.00 0.00 32.86 3.10
8053 16093 2.592993 CGGCCTCCCACCAAGAGAA 61.593 63.158 0.00 0.00 32.86 2.87
8054 16094 1.301293 GGCCTCCCACCAAGAGAAG 59.699 63.158 0.00 0.00 32.86 2.85
8055 16095 1.201429 GGCCTCCCACCAAGAGAAGA 61.201 60.000 0.00 0.00 32.86 2.87
8056 16096 0.915364 GCCTCCCACCAAGAGAAGAT 59.085 55.000 0.00 0.00 32.86 2.40
8057 16097 1.283321 GCCTCCCACCAAGAGAAGATT 59.717 52.381 0.00 0.00 32.86 2.40
8058 16098 2.505819 GCCTCCCACCAAGAGAAGATTA 59.494 50.000 0.00 0.00 32.86 1.75
8059 16099 3.054361 GCCTCCCACCAAGAGAAGATTAA 60.054 47.826 0.00 0.00 32.86 1.40
8060 16100 4.385754 GCCTCCCACCAAGAGAAGATTAAT 60.386 45.833 0.00 0.00 32.86 1.40
8061 16101 5.372373 CCTCCCACCAAGAGAAGATTAATC 58.628 45.833 7.41 7.41 32.86 1.75
8062 16102 5.023533 TCCCACCAAGAGAAGATTAATCG 57.976 43.478 9.78 0.00 0.00 3.34
8063 16103 4.469945 TCCCACCAAGAGAAGATTAATCGT 59.530 41.667 9.78 6.71 0.00 3.73
8064 16104 5.045869 TCCCACCAAGAGAAGATTAATCGTT 60.046 40.000 9.78 5.06 0.00 3.85
8065 16105 5.294552 CCCACCAAGAGAAGATTAATCGTTC 59.705 44.000 9.78 12.79 0.00 3.95
8066 16106 6.109359 CCACCAAGAGAAGATTAATCGTTCT 58.891 40.000 20.66 20.66 33.14 3.01
8067 16107 6.595716 CCACCAAGAGAAGATTAATCGTTCTT 59.404 38.462 21.11 19.76 34.95 2.52
8068 16108 7.201565 CCACCAAGAGAAGATTAATCGTTCTTC 60.202 40.741 21.11 15.51 45.30 2.87
8069 16109 6.819146 ACCAAGAGAAGATTAATCGTTCTTCC 59.181 38.462 21.11 14.14 45.83 3.46
8070 16110 6.258947 CCAAGAGAAGATTAATCGTTCTTCCC 59.741 42.308 21.11 9.48 45.83 3.97
8071 16111 5.593010 AGAGAAGATTAATCGTTCTTCCCG 58.407 41.667 21.11 0.00 45.83 5.14
8072 16112 5.127356 AGAGAAGATTAATCGTTCTTCCCGT 59.873 40.000 21.11 4.86 45.83 5.28
8073 16113 5.349809 AGAAGATTAATCGTTCTTCCCGTC 58.650 41.667 17.41 0.79 45.83 4.79
8074 16114 4.730949 AGATTAATCGTTCTTCCCGTCA 57.269 40.909 9.78 0.00 0.00 4.35
8075 16115 5.080969 AGATTAATCGTTCTTCCCGTCAA 57.919 39.130 9.78 0.00 0.00 3.18
8076 16116 5.484715 AGATTAATCGTTCTTCCCGTCAAA 58.515 37.500 9.78 0.00 0.00 2.69
8077 16117 5.935789 AGATTAATCGTTCTTCCCGTCAAAA 59.064 36.000 9.78 0.00 0.00 2.44
8078 16118 6.428771 AGATTAATCGTTCTTCCCGTCAAAAA 59.571 34.615 9.78 0.00 0.00 1.94
8114 16154 9.853177 AGATTAATCCTTACAAGTTGATTAGGG 57.147 33.333 10.54 2.65 32.87 3.53
8115 16155 7.875327 TTAATCCTTACAAGTTGATTAGGGC 57.125 36.000 10.54 0.00 32.87 5.19
8116 16156 4.919774 TCCTTACAAGTTGATTAGGGCA 57.080 40.909 10.54 0.00 0.00 5.36
8117 16157 5.450818 TCCTTACAAGTTGATTAGGGCAT 57.549 39.130 10.54 0.00 0.00 4.40
8118 16158 5.192927 TCCTTACAAGTTGATTAGGGCATG 58.807 41.667 10.54 0.00 0.00 4.06
8119 16159 4.949856 CCTTACAAGTTGATTAGGGCATGT 59.050 41.667 10.54 0.00 0.00 3.21
8120 16160 6.069905 TCCTTACAAGTTGATTAGGGCATGTA 60.070 38.462 10.54 0.00 0.00 2.29
8121 16161 6.772716 CCTTACAAGTTGATTAGGGCATGTAT 59.227 38.462 10.54 0.00 0.00 2.29
8122 16162 7.936847 CCTTACAAGTTGATTAGGGCATGTATA 59.063 37.037 10.54 0.00 0.00 1.47
8123 16163 9.337396 CTTACAAGTTGATTAGGGCATGTATAA 57.663 33.333 10.54 0.00 0.00 0.98
8124 16164 9.860650 TTACAAGTTGATTAGGGCATGTATAAT 57.139 29.630 10.54 0.00 0.00 1.28
8125 16165 8.169977 ACAAGTTGATTAGGGCATGTATAATG 57.830 34.615 10.54 0.00 0.00 1.90
8126 16166 7.231317 ACAAGTTGATTAGGGCATGTATAATGG 59.769 37.037 10.54 0.00 0.00 3.16
8127 16167 6.852404 AGTTGATTAGGGCATGTATAATGGT 58.148 36.000 0.00 0.00 0.00 3.55
8128 16168 7.297614 AGTTGATTAGGGCATGTATAATGGTT 58.702 34.615 0.00 0.00 0.00 3.67
8129 16169 7.231317 AGTTGATTAGGGCATGTATAATGGTTG 59.769 37.037 0.00 0.00 0.00 3.77
8130 16170 6.846988 TGATTAGGGCATGTATAATGGTTGA 58.153 36.000 0.00 0.00 0.00 3.18
8131 16171 7.469343 TGATTAGGGCATGTATAATGGTTGAT 58.531 34.615 0.00 0.00 0.00 2.57
8132 16172 8.610369 TGATTAGGGCATGTATAATGGTTGATA 58.390 33.333 0.00 0.00 0.00 2.15
8133 16173 9.461312 GATTAGGGCATGTATAATGGTTGATAA 57.539 33.333 0.00 0.00 0.00 1.75
8134 16174 8.862325 TTAGGGCATGTATAATGGTTGATAAG 57.138 34.615 0.00 0.00 0.00 1.73
8135 16175 6.248433 AGGGCATGTATAATGGTTGATAAGG 58.752 40.000 0.00 0.00 0.00 2.69
8136 16176 6.010219 GGGCATGTATAATGGTTGATAAGGT 58.990 40.000 0.00 0.00 0.00 3.50
8137 16177 7.018149 AGGGCATGTATAATGGTTGATAAGGTA 59.982 37.037 0.00 0.00 0.00 3.08
8138 16178 7.336931 GGGCATGTATAATGGTTGATAAGGTAG 59.663 40.741 0.00 0.00 0.00 3.18
8139 16179 7.883311 GGCATGTATAATGGTTGATAAGGTAGT 59.117 37.037 0.00 0.00 0.00 2.73
8140 16180 8.936864 GCATGTATAATGGTTGATAAGGTAGTC 58.063 37.037 0.00 0.00 0.00 2.59
8157 16197 7.719871 AGGTAGTCTTATCTTAAGTCTTGCA 57.280 36.000 1.63 0.00 0.00 4.08
8158 16198 8.312669 AGGTAGTCTTATCTTAAGTCTTGCAT 57.687 34.615 1.63 0.00 0.00 3.96
8159 16199 8.200792 AGGTAGTCTTATCTTAAGTCTTGCATG 58.799 37.037 1.63 0.00 0.00 4.06
8160 16200 7.982354 GGTAGTCTTATCTTAAGTCTTGCATGT 59.018 37.037 1.63 0.00 0.00 3.21
8175 16215 9.836864 AGTCTTGCATGTAATTTAGATATGACA 57.163 29.630 0.00 0.00 0.00 3.58
8206 16246 9.525826 AAAAAGTCTACAATGGATCATCTCTTT 57.474 29.630 0.00 0.00 0.00 2.52
8207 16247 8.503458 AAAGTCTACAATGGATCATCTCTTTG 57.497 34.615 0.00 0.00 0.00 2.77
8208 16248 7.192852 AGTCTACAATGGATCATCTCTTTGT 57.807 36.000 0.00 10.31 35.65 2.83
8209 16249 7.271511 AGTCTACAATGGATCATCTCTTTGTC 58.728 38.462 9.31 0.67 34.36 3.18
8210 16250 7.125507 AGTCTACAATGGATCATCTCTTTGTCT 59.874 37.037 9.31 2.26 34.36 3.41
8211 16251 7.768120 GTCTACAATGGATCATCTCTTTGTCTT 59.232 37.037 9.31 0.00 34.36 3.01
8212 16252 8.981659 TCTACAATGGATCATCTCTTTGTCTTA 58.018 33.333 9.31 0.00 34.36 2.10
8213 16253 9.775854 CTACAATGGATCATCTCTTTGTCTTAT 57.224 33.333 9.31 0.00 34.36 1.73
8214 16254 8.674263 ACAATGGATCATCTCTTTGTCTTATC 57.326 34.615 0.00 0.00 29.79 1.75
8215 16255 8.492782 ACAATGGATCATCTCTTTGTCTTATCT 58.507 33.333 0.00 0.00 29.79 1.98
8216 16256 9.339850 CAATGGATCATCTCTTTGTCTTATCTT 57.660 33.333 0.00 0.00 0.00 2.40
8217 16257 9.917887 AATGGATCATCTCTTTGTCTTATCTTT 57.082 29.630 0.00 0.00 0.00 2.52
8245 16285 9.975218 ATAACTAGTCATTCCTAAAAATGTGGT 57.025 29.630 0.00 0.00 37.77 4.16
8246 16286 7.687941 ACTAGTCATTCCTAAAAATGTGGTG 57.312 36.000 0.00 0.00 37.77 4.17
8247 16287 7.458397 ACTAGTCATTCCTAAAAATGTGGTGA 58.542 34.615 0.00 0.00 37.77 4.02
8248 16288 6.824305 AGTCATTCCTAAAAATGTGGTGAG 57.176 37.500 0.00 0.00 37.77 3.51
8249 16289 6.542821 AGTCATTCCTAAAAATGTGGTGAGA 58.457 36.000 0.00 0.00 37.77 3.27
8250 16290 6.431234 AGTCATTCCTAAAAATGTGGTGAGAC 59.569 38.462 0.00 0.00 37.77 3.36
8251 16291 6.206634 GTCATTCCTAAAAATGTGGTGAGACA 59.793 38.462 0.00 0.00 37.77 3.41
8252 16292 6.947733 TCATTCCTAAAAATGTGGTGAGACAT 59.052 34.615 0.00 0.00 38.23 3.06
8253 16293 8.106462 TCATTCCTAAAAATGTGGTGAGACATA 58.894 33.333 0.00 0.00 35.43 2.29
8254 16294 8.906867 CATTCCTAAAAATGTGGTGAGACATAT 58.093 33.333 0.00 0.00 35.43 1.78
8255 16295 8.877864 TTCCTAAAAATGTGGTGAGACATATT 57.122 30.769 0.00 0.00 35.43 1.28
8256 16296 8.279970 TCCTAAAAATGTGGTGAGACATATTG 57.720 34.615 0.00 0.00 35.43 1.90
8257 16297 7.888021 TCCTAAAAATGTGGTGAGACATATTGT 59.112 33.333 0.00 0.00 35.43 2.71
8258 16298 7.970061 CCTAAAAATGTGGTGAGACATATTGTG 59.030 37.037 0.00 0.00 35.43 3.33
8259 16299 4.970662 AATGTGGTGAGACATATTGTGC 57.029 40.909 0.00 0.00 35.43 4.57
8260 16300 3.701205 TGTGGTGAGACATATTGTGCT 57.299 42.857 0.00 0.00 0.00 4.40
8261 16301 4.817318 TGTGGTGAGACATATTGTGCTA 57.183 40.909 0.00 0.00 0.00 3.49
8262 16302 5.159273 TGTGGTGAGACATATTGTGCTAA 57.841 39.130 0.00 0.00 0.00 3.09
8263 16303 5.178061 TGTGGTGAGACATATTGTGCTAAG 58.822 41.667 0.00 0.00 0.00 2.18
8264 16304 5.046663 TGTGGTGAGACATATTGTGCTAAGA 60.047 40.000 0.00 0.00 0.00 2.10
8265 16305 5.521735 GTGGTGAGACATATTGTGCTAAGAG 59.478 44.000 0.00 0.00 0.00 2.85
8266 16306 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
8267 16307 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
8268 16308 6.644592 GGTGAGACATATTGTGCTAAGAGATC 59.355 42.308 0.00 0.00 0.00 2.75
8269 16309 7.205992 GTGAGACATATTGTGCTAAGAGATCA 58.794 38.462 0.00 0.00 0.00 2.92
8270 16310 7.871973 GTGAGACATATTGTGCTAAGAGATCAT 59.128 37.037 0.00 0.00 0.00 2.45
8271 16311 8.087136 TGAGACATATTGTGCTAAGAGATCATC 58.913 37.037 0.00 0.00 0.00 2.92
8272 16312 8.192743 AGACATATTGTGCTAAGAGATCATCT 57.807 34.615 0.00 0.00 41.27 2.90
8273 16313 8.306038 AGACATATTGTGCTAAGAGATCATCTC 58.694 37.037 6.55 6.55 43.70 2.75
8304 16344 9.833182 CTTCTCTTAAATAAGAAAAGACAAGCC 57.167 33.333 9.63 0.00 40.91 4.35
8305 16345 9.574516 TTCTCTTAAATAAGAAAAGACAAGCCT 57.425 29.630 4.57 0.00 41.37 4.58
8306 16346 9.574516 TCTCTTAAATAAGAAAAGACAAGCCTT 57.425 29.630 4.57 0.00 41.37 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 73 5.732633 CTTCAATGGGCATGGATAAAAACA 58.267 37.500 0.00 0.00 0.00 2.83
102 115 2.281070 CAACCCAGTGCAGCGACT 60.281 61.111 0.00 0.00 0.00 4.18
213 230 4.953868 CGGTGTTGGTCGACGGCA 62.954 66.667 9.92 5.37 0.00 5.69
308 329 5.452496 GCTACCATCTGAGTTCATTCTGCTA 60.452 44.000 0.00 0.00 0.00 3.49
316 337 5.181009 CAGAAATGCTACCATCTGAGTTCA 58.819 41.667 0.00 0.00 29.32 3.18
323 344 2.684927 GCACCCAGAAATGCTACCATCT 60.685 50.000 0.00 0.00 38.84 2.90
353 374 2.845795 ACCGACGGGGAGGTTTGT 60.846 61.111 20.00 0.00 37.49 2.83
489 512 4.111916 CCAACGACAACAAAAGCTTCAAT 58.888 39.130 0.00 0.00 0.00 2.57
790 826 1.462670 GCTCAGTCGCTTCCTTTTCTG 59.537 52.381 0.00 0.00 0.00 3.02
826 872 3.521765 AATGTTTGGGGCCGGAGCA 62.522 57.895 5.05 0.00 42.56 4.26
848 894 5.045286 ACGAAGAGGGTAGAAAGGTAGAGTA 60.045 44.000 0.00 0.00 0.00 2.59
849 895 4.263860 ACGAAGAGGGTAGAAAGGTAGAGT 60.264 45.833 0.00 0.00 0.00 3.24
850 896 4.271661 ACGAAGAGGGTAGAAAGGTAGAG 58.728 47.826 0.00 0.00 0.00 2.43
851 897 4.268359 GACGAAGAGGGTAGAAAGGTAGA 58.732 47.826 0.00 0.00 0.00 2.59
852 898 3.065095 CGACGAAGAGGGTAGAAAGGTAG 59.935 52.174 0.00 0.00 0.00 3.18
853 899 3.012518 CGACGAAGAGGGTAGAAAGGTA 58.987 50.000 0.00 0.00 0.00 3.08
854 900 1.817447 CGACGAAGAGGGTAGAAAGGT 59.183 52.381 0.00 0.00 0.00 3.50
855 901 1.469423 GCGACGAAGAGGGTAGAAAGG 60.469 57.143 0.00 0.00 0.00 3.11
856 902 1.201647 TGCGACGAAGAGGGTAGAAAG 59.798 52.381 0.00 0.00 0.00 2.62
895 941 0.545548 AAGGAGGGAGTGGAGTGGAC 60.546 60.000 0.00 0.00 0.00 4.02
928 974 1.061735 GGGGGAAGAGAGGAGGAAGAT 60.062 57.143 0.00 0.00 0.00 2.40
1013 1067 1.133809 GGCAGGGGGTATGATAGGCA 61.134 60.000 0.00 0.00 0.00 4.75
1451 1530 6.463049 GGAAAGGAAAGGAAAGGAAAGGAAAG 60.463 42.308 0.00 0.00 0.00 2.62
1452 1531 5.365605 GGAAAGGAAAGGAAAGGAAAGGAAA 59.634 40.000 0.00 0.00 0.00 3.13
1453 1532 4.899457 GGAAAGGAAAGGAAAGGAAAGGAA 59.101 41.667 0.00 0.00 0.00 3.36
1454 1533 4.170053 AGGAAAGGAAAGGAAAGGAAAGGA 59.830 41.667 0.00 0.00 0.00 3.36
1455 1534 4.483950 AGGAAAGGAAAGGAAAGGAAAGG 58.516 43.478 0.00 0.00 0.00 3.11
1456 1535 6.463049 GGAAAGGAAAGGAAAGGAAAGGAAAG 60.463 42.308 0.00 0.00 0.00 2.62
1457 1536 5.365605 GGAAAGGAAAGGAAAGGAAAGGAAA 59.634 40.000 0.00 0.00 0.00 3.13
1458 1537 4.899457 GGAAAGGAAAGGAAAGGAAAGGAA 59.101 41.667 0.00 0.00 0.00 3.36
1459 1538 4.170053 AGGAAAGGAAAGGAAAGGAAAGGA 59.830 41.667 0.00 0.00 0.00 3.36
1460 1539 4.483950 AGGAAAGGAAAGGAAAGGAAAGG 58.516 43.478 0.00 0.00 0.00 3.11
1461 1540 6.463049 GGAAAGGAAAGGAAAGGAAAGGAAAG 60.463 42.308 0.00 0.00 0.00 2.62
1462 1541 5.365605 GGAAAGGAAAGGAAAGGAAAGGAAA 59.634 40.000 0.00 0.00 0.00 3.13
1463 1542 4.899457 GGAAAGGAAAGGAAAGGAAAGGAA 59.101 41.667 0.00 0.00 0.00 3.36
1464 1543 4.170053 AGGAAAGGAAAGGAAAGGAAAGGA 59.830 41.667 0.00 0.00 0.00 3.36
1465 1544 4.483950 AGGAAAGGAAAGGAAAGGAAAGG 58.516 43.478 0.00 0.00 0.00 3.11
1466 1545 6.463049 GGAAAGGAAAGGAAAGGAAAGGAAAG 60.463 42.308 0.00 0.00 0.00 2.62
1467 1546 5.365605 GGAAAGGAAAGGAAAGGAAAGGAAA 59.634 40.000 0.00 0.00 0.00 3.13
1468 1547 4.899457 GGAAAGGAAAGGAAAGGAAAGGAA 59.101 41.667 0.00 0.00 0.00 3.36
1503 1587 4.931661 AATCGACGAAAGCTATTCCCTA 57.068 40.909 0.00 0.00 0.00 3.53
1504 1588 3.821421 AATCGACGAAAGCTATTCCCT 57.179 42.857 0.00 0.00 0.00 4.20
1508 1592 6.380095 ACTCTCTAATCGACGAAAGCTATT 57.620 37.500 0.00 0.00 0.00 1.73
1509 1593 6.347888 GCTACTCTCTAATCGACGAAAGCTAT 60.348 42.308 0.00 0.00 0.00 2.97
1594 1713 0.321122 GTCAGGGACAACAGAGCAGG 60.321 60.000 0.00 0.00 32.09 4.85
1672 1791 0.247460 TCAGCACCATGGTCGAGAAG 59.753 55.000 16.53 3.51 0.00 2.85
1764 1883 4.584327 ATGTGCAGTAGATACGTATGCA 57.416 40.909 13.97 14.56 44.10 3.96
1770 1889 6.247727 AGATGAGTATGTGCAGTAGATACG 57.752 41.667 0.00 0.00 39.74 3.06
2034 2184 0.391130 CAGAATTCGGACGCAAGGGA 60.391 55.000 0.00 0.00 46.39 4.20
2045 2195 2.349590 TGATGGAGTGCACAGAATTCG 58.650 47.619 21.04 0.00 0.00 3.34
2240 2437 3.198635 CCACCATGACTTAGTCCATCAGT 59.801 47.826 10.10 0.00 0.00 3.41
2340 2540 7.839680 AAAAAGGAAAATATGAGAGTGGTGT 57.160 32.000 0.00 0.00 0.00 4.16
2403 2604 8.135529 GGATAGGGCAACAAATGAAATAACTAC 58.864 37.037 0.00 0.00 39.74 2.73
2761 3073 4.663636 ACTAAAAGCACTGCGTACATTC 57.336 40.909 0.00 0.00 0.00 2.67
2769 3081 5.674933 ACAGTAGAAACTAAAAGCACTGC 57.325 39.130 0.00 0.00 36.29 4.40
3065 3899 0.970427 TGTGCTCCAGGAGATACGCA 60.970 55.000 21.89 12.33 0.00 5.24
3522 4470 3.462982 TCACACATTTTAGTGAGCACGT 58.537 40.909 0.57 0.00 42.05 4.49
4036 5011 3.887621 AATGTAGCTTCGCTGTTAGGA 57.112 42.857 0.00 0.00 40.10 2.94
4038 5013 8.895932 AATTTAAAATGTAGCTTCGCTGTTAG 57.104 30.769 0.00 0.00 40.10 2.34
4069 5044 8.553085 TCTCCAAATAATCAGACAGAATAGGA 57.447 34.615 0.00 0.00 0.00 2.94
4080 5055 8.080417 CCATTACATGCTTCTCCAAATAATCAG 58.920 37.037 0.00 0.00 0.00 2.90
4109 5084 7.256494 TCCTCCTACTTAGTAGATAGCCTAC 57.744 44.000 19.89 0.00 46.34 3.18
4368 9401 5.542779 AGGATAAATCTGGCGCTTAGTTAG 58.457 41.667 7.64 0.00 0.00 2.34
4464 9497 7.993821 TTTGACAAAATAAAATGACGAAGCA 57.006 28.000 0.00 0.00 0.00 3.91
4718 9751 1.891178 CAATCAAGCATGCACACTCG 58.109 50.000 21.98 0.00 0.00 4.18
4758 9791 6.657875 ACAATGAATTGAAGAAACCCCAAAA 58.342 32.000 9.94 0.00 40.14 2.44
5054 10089 4.281435 TGTGATGTGCCATCAAAAAGTCAT 59.719 37.500 16.37 0.00 0.00 3.06
5137 10173 4.750098 CACAAGAGTTCGAAACACATAGGT 59.250 41.667 0.00 0.00 0.00 3.08
5149 10185 9.885743 CAAAAATTTAAACTTCACAAGAGTTCG 57.114 29.630 0.00 0.00 0.00 3.95
5357 10393 3.149981 AGCCTTTACTCCAAAGCAAGTC 58.850 45.455 0.00 0.00 42.07 3.01
5393 10429 4.971282 TCTTCCATCCACTACAGAATCCAT 59.029 41.667 0.00 0.00 0.00 3.41
5496 10532 7.348080 TCAATATCACTGATAGAACTCGGTT 57.652 36.000 5.04 0.00 32.35 4.44
5702 10738 0.679002 CCCTTCCCACATGCTCAGTG 60.679 60.000 0.00 0.00 36.76 3.66
5809 10846 3.307691 CCTTCCCACATGCTCAGTAGAAA 60.308 47.826 0.00 0.00 0.00 2.52
6015 11053 5.625150 AGTCTTTCAACTTGTCCTAAGCAT 58.375 37.500 0.00 0.00 0.00 3.79
6112 11150 2.805845 CATTAGCACATCTGCAAAGCC 58.194 47.619 0.00 0.00 46.97 4.35
6403 11443 8.458843 ACCAACTCCGAAACAATTCTATTATTG 58.541 33.333 0.00 0.00 40.53 1.90
6571 11774 6.197276 GCATGCAGTAAATACAAGTCATCAG 58.803 40.000 14.21 0.00 0.00 2.90
7087 12325 2.537401 GTAAACCGTCTTCCATCTCGG 58.463 52.381 0.00 0.00 46.98 4.63
7103 12341 5.482878 ACAGGAAGAAAGAGGATACCGTAAA 59.517 40.000 0.00 0.00 37.17 2.01
7120 12358 6.828785 AGTATAAAATGTAGCCCAACAGGAAG 59.171 38.462 0.00 0.00 38.24 3.46
7129 12367 8.904099 ATCACAGTAAGTATAAAATGTAGCCC 57.096 34.615 0.00 0.00 0.00 5.19
7168 12406 4.406943 GCGACAAGGAAGAAACATCATTC 58.593 43.478 0.00 0.00 0.00 2.67
7347 12603 3.522553 ACTTCTACTTGCAGTAATCGCC 58.477 45.455 0.00 0.00 29.00 5.54
7373 12629 7.291182 AGTTTCTGGCAAGAGTATATATCTGGT 59.709 37.037 0.00 0.00 32.79 4.00
7390 12646 1.668047 GCATGCTCACAAGTTTCTGGC 60.668 52.381 11.37 0.00 0.00 4.85
7403 12659 2.416431 GGACCAAATCAAGTGCATGCTC 60.416 50.000 20.33 15.94 0.00 4.26
7404 12660 1.547372 GGACCAAATCAAGTGCATGCT 59.453 47.619 20.33 0.00 0.00 3.79
7466 12730 4.765813 ATTAACCTAACCGGCTACATGT 57.234 40.909 0.00 2.69 35.61 3.21
7549 12813 3.314080 TCTCACGCCCTTAAAACAGTTTG 59.686 43.478 0.00 0.00 0.00 2.93
7558 12822 1.612442 AGCCCTCTCACGCCCTTAA 60.612 57.895 0.00 0.00 0.00 1.85
7605 12870 7.681939 TCGGAAAAGCTAACAACATTTAGAT 57.318 32.000 0.00 0.00 31.60 1.98
7606 12871 7.681939 ATCGGAAAAGCTAACAACATTTAGA 57.318 32.000 0.00 0.00 31.60 2.10
7699 14547 5.632244 AACACAGTACAAAAACGGAAACT 57.368 34.783 0.00 0.00 0.00 2.66
7700 14548 5.443562 GCAAACACAGTACAAAAACGGAAAC 60.444 40.000 0.00 0.00 0.00 2.78
7754 14602 4.167319 AGCATCAAATGGGGGTAAGTTTT 58.833 39.130 0.00 0.00 0.00 2.43
7755 14603 3.790126 AGCATCAAATGGGGGTAAGTTT 58.210 40.909 0.00 0.00 0.00 2.66
7756 14604 3.473113 AGCATCAAATGGGGGTAAGTT 57.527 42.857 0.00 0.00 0.00 2.66
7757 14605 3.785887 TCTAGCATCAAATGGGGGTAAGT 59.214 43.478 0.00 0.00 0.00 2.24
7759 14607 5.371176 TGTATCTAGCATCAAATGGGGGTAA 59.629 40.000 0.00 0.00 0.00 2.85
7760 14608 4.910913 TGTATCTAGCATCAAATGGGGGTA 59.089 41.667 0.00 0.00 0.00 3.69
7761 14609 3.721575 TGTATCTAGCATCAAATGGGGGT 59.278 43.478 0.00 0.00 0.00 4.95
7762 14610 4.371624 TGTATCTAGCATCAAATGGGGG 57.628 45.455 0.00 0.00 0.00 5.40
7763 14611 6.005823 TGAATGTATCTAGCATCAAATGGGG 58.994 40.000 0.00 0.00 0.00 4.96
7764 14612 7.698506 ATGAATGTATCTAGCATCAAATGGG 57.301 36.000 0.00 0.00 0.00 4.00
7765 14613 9.406828 CAAATGAATGTATCTAGCATCAAATGG 57.593 33.333 0.00 0.00 0.00 3.16
7768 14616 8.843262 CCTCAAATGAATGTATCTAGCATCAAA 58.157 33.333 0.00 0.00 0.00 2.69
7769 14617 7.446319 CCCTCAAATGAATGTATCTAGCATCAA 59.554 37.037 0.00 0.00 0.00 2.57
7770 14618 6.938596 CCCTCAAATGAATGTATCTAGCATCA 59.061 38.462 0.00 0.00 0.00 3.07
7771 14619 7.164122 TCCCTCAAATGAATGTATCTAGCATC 58.836 38.462 0.00 0.00 0.00 3.91
7773 14621 6.499106 TCCCTCAAATGAATGTATCTAGCA 57.501 37.500 0.00 0.00 0.00 3.49
7774 14622 9.160496 CTTATCCCTCAAATGAATGTATCTAGC 57.840 37.037 0.00 0.00 0.00 3.42
7779 14627 9.305555 CCAATCTTATCCCTCAAATGAATGTAT 57.694 33.333 0.00 0.00 0.00 2.29
7780 14628 7.725397 CCCAATCTTATCCCTCAAATGAATGTA 59.275 37.037 0.00 0.00 0.00 2.29
7781 14629 6.552350 CCCAATCTTATCCCTCAAATGAATGT 59.448 38.462 0.00 0.00 0.00 2.71
7782 14630 6.779049 TCCCAATCTTATCCCTCAAATGAATG 59.221 38.462 0.00 0.00 0.00 2.67
7784 14632 6.339999 TCCCAATCTTATCCCTCAAATGAA 57.660 37.500 0.00 0.00 0.00 2.57
7786 14634 5.537674 CCTTCCCAATCTTATCCCTCAAATG 59.462 44.000 0.00 0.00 0.00 2.32
7787 14635 5.709594 CCTTCCCAATCTTATCCCTCAAAT 58.290 41.667 0.00 0.00 0.00 2.32
7788 14636 4.631169 GCCTTCCCAATCTTATCCCTCAAA 60.631 45.833 0.00 0.00 0.00 2.69
7789 14637 3.117512 GCCTTCCCAATCTTATCCCTCAA 60.118 47.826 0.00 0.00 0.00 3.02
7790 14638 2.443255 GCCTTCCCAATCTTATCCCTCA 59.557 50.000 0.00 0.00 0.00 3.86
7792 14640 2.794286 AGCCTTCCCAATCTTATCCCT 58.206 47.619 0.00 0.00 0.00 4.20
7794 14642 5.450550 CGAAAAAGCCTTCCCAATCTTATCC 60.451 44.000 0.00 0.00 0.00 2.59
7795 14643 5.357032 TCGAAAAAGCCTTCCCAATCTTATC 59.643 40.000 0.00 0.00 0.00 1.75
7796 14644 5.261216 TCGAAAAAGCCTTCCCAATCTTAT 58.739 37.500 0.00 0.00 0.00 1.73
7797 14645 4.658063 TCGAAAAAGCCTTCCCAATCTTA 58.342 39.130 0.00 0.00 0.00 2.10
7798 14646 3.496331 TCGAAAAAGCCTTCCCAATCTT 58.504 40.909 0.00 0.00 0.00 2.40
7801 14649 2.962421 TGTTCGAAAAAGCCTTCCCAAT 59.038 40.909 0.00 0.00 0.00 3.16
7803 14651 2.060050 TGTTCGAAAAAGCCTTCCCA 57.940 45.000 0.00 0.00 0.00 4.37
7804 14652 2.288213 CCTTGTTCGAAAAAGCCTTCCC 60.288 50.000 20.72 0.00 0.00 3.97
7805 14653 2.288213 CCCTTGTTCGAAAAAGCCTTCC 60.288 50.000 20.72 0.00 0.00 3.46
7806 14654 2.621526 TCCCTTGTTCGAAAAAGCCTTC 59.378 45.455 20.72 0.00 0.00 3.46
7808 14656 2.230660 CTCCCTTGTTCGAAAAAGCCT 58.769 47.619 20.72 0.00 0.00 4.58
7809 14657 1.954382 ACTCCCTTGTTCGAAAAAGCC 59.046 47.619 20.72 0.00 0.00 4.35
7813 14661 4.069304 CCATGTACTCCCTTGTTCGAAAA 58.931 43.478 0.00 0.00 0.00 2.29
7815 14663 2.901192 TCCATGTACTCCCTTGTTCGAA 59.099 45.455 0.00 0.00 0.00 3.71
7816 14664 2.531771 TCCATGTACTCCCTTGTTCGA 58.468 47.619 0.00 0.00 0.00 3.71
7817 14665 3.198068 CATCCATGTACTCCCTTGTTCG 58.802 50.000 0.00 0.00 0.00 3.95
7818 14666 3.199946 TCCATCCATGTACTCCCTTGTTC 59.800 47.826 0.00 0.00 0.00 3.18
7819 14667 3.189606 TCCATCCATGTACTCCCTTGTT 58.810 45.455 0.00 0.00 0.00 2.83
7820 14668 2.845659 TCCATCCATGTACTCCCTTGT 58.154 47.619 0.00 0.00 0.00 3.16
7821 14669 3.455910 TCTTCCATCCATGTACTCCCTTG 59.544 47.826 0.00 0.00 0.00 3.61
7823 14671 3.421394 TCTTCCATCCATGTACTCCCT 57.579 47.619 0.00 0.00 0.00 4.20
7825 14673 5.552178 GGTAATCTTCCATCCATGTACTCC 58.448 45.833 0.00 0.00 0.00 3.85
7826 14674 5.230942 CGGTAATCTTCCATCCATGTACTC 58.769 45.833 0.00 0.00 0.00 2.59
7827 14675 4.040461 CCGGTAATCTTCCATCCATGTACT 59.960 45.833 0.00 0.00 0.00 2.73
7828 14676 4.039973 TCCGGTAATCTTCCATCCATGTAC 59.960 45.833 0.00 0.00 0.00 2.90
7829 14677 4.039973 GTCCGGTAATCTTCCATCCATGTA 59.960 45.833 0.00 0.00 0.00 2.29
7830 14678 3.045634 TCCGGTAATCTTCCATCCATGT 58.954 45.455 0.00 0.00 0.00 3.21
7831 14679 3.181455 TGTCCGGTAATCTTCCATCCATG 60.181 47.826 0.00 0.00 0.00 3.66
7834 14682 3.181454 ACATGTCCGGTAATCTTCCATCC 60.181 47.826 0.00 0.00 0.00 3.51
7837 14685 2.835156 TCACATGTCCGGTAATCTTCCA 59.165 45.455 0.00 0.00 0.00 3.53
7838 14686 3.536956 TCACATGTCCGGTAATCTTCC 57.463 47.619 0.00 0.00 0.00 3.46
7850 15888 2.704725 ACCAAATGCGTTCACATGTC 57.295 45.000 0.00 0.00 0.00 3.06
7880 15918 2.615447 TCGCGGATTACACTGGTACTAG 59.385 50.000 6.13 4.44 0.00 2.57
7882 15920 1.404391 CTCGCGGATTACACTGGTACT 59.596 52.381 6.13 0.00 0.00 2.73
7883 15921 1.133790 ACTCGCGGATTACACTGGTAC 59.866 52.381 6.13 0.00 0.00 3.34
7919 15957 6.133392 CAGTACGGTTCACAATAAAACAGTG 58.867 40.000 0.00 0.00 35.18 3.66
7937 15975 2.056577 GACGAAAGGGTGAACAGTACG 58.943 52.381 0.00 0.00 0.00 3.67
7943 15981 3.040147 TGATGAGACGAAAGGGTGAAC 57.960 47.619 0.00 0.00 0.00 3.18
7948 15986 2.744202 CCTTGTTGATGAGACGAAAGGG 59.256 50.000 0.00 0.00 0.00 3.95
7963 16001 4.700213 CGAAGACATCCATAAACCCTTGTT 59.300 41.667 0.00 0.00 35.82 2.83
7995 16035 9.498176 CCCATGATTTTCTTTTCATTCTCTTTT 57.502 29.630 0.00 0.00 30.24 2.27
7996 16036 8.654094 ACCCATGATTTTCTTTTCATTCTCTTT 58.346 29.630 0.00 0.00 30.24 2.52
7997 16037 8.092687 CACCCATGATTTTCTTTTCATTCTCTT 58.907 33.333 0.00 0.00 30.24 2.85
7998 16038 7.609056 CACCCATGATTTTCTTTTCATTCTCT 58.391 34.615 0.00 0.00 30.24 3.10
7999 16039 6.312180 GCACCCATGATTTTCTTTTCATTCTC 59.688 38.462 0.00 0.00 30.24 2.87
8000 16040 6.168389 GCACCCATGATTTTCTTTTCATTCT 58.832 36.000 0.00 0.00 30.24 2.40
8001 16041 5.062558 CGCACCCATGATTTTCTTTTCATTC 59.937 40.000 0.00 0.00 30.24 2.67
8002 16042 4.931002 CGCACCCATGATTTTCTTTTCATT 59.069 37.500 0.00 0.00 30.24 2.57
8003 16043 4.497300 CGCACCCATGATTTTCTTTTCAT 58.503 39.130 0.00 0.00 32.87 2.57
8004 16044 3.305950 CCGCACCCATGATTTTCTTTTCA 60.306 43.478 0.00 0.00 0.00 2.69
8005 16045 3.253230 CCGCACCCATGATTTTCTTTTC 58.747 45.455 0.00 0.00 0.00 2.29
8046 16086 6.019479 CGGGAAGAACGATTAATCTTCTCTTG 60.019 42.308 20.73 12.64 46.42 3.02
8047 16087 6.043411 CGGGAAGAACGATTAATCTTCTCTT 58.957 40.000 20.73 18.89 46.42 2.85
8048 16088 5.127356 ACGGGAAGAACGATTAATCTTCTCT 59.873 40.000 20.73 13.83 46.42 3.10
8049 16089 5.349809 ACGGGAAGAACGATTAATCTTCTC 58.650 41.667 20.73 14.55 46.86 2.87
8050 16090 5.105473 TGACGGGAAGAACGATTAATCTTCT 60.105 40.000 13.45 15.85 46.86 2.85
8051 16091 5.107133 TGACGGGAAGAACGATTAATCTTC 58.893 41.667 13.45 14.19 46.93 2.87
8052 16092 5.080969 TGACGGGAAGAACGATTAATCTT 57.919 39.130 13.45 0.97 38.56 2.40
8053 16093 4.730949 TGACGGGAAGAACGATTAATCT 57.269 40.909 13.45 0.00 34.93 2.40
8054 16094 5.789710 TTTGACGGGAAGAACGATTAATC 57.210 39.130 5.30 5.30 34.93 1.75
8055 16095 6.563222 TTTTTGACGGGAAGAACGATTAAT 57.437 33.333 0.00 0.00 34.93 1.40
8110 16150 7.018149 ACCTTATCAACCATTATACATGCCCTA 59.982 37.037 0.00 0.00 0.00 3.53
8111 16151 6.183361 ACCTTATCAACCATTATACATGCCCT 60.183 38.462 0.00 0.00 0.00 5.19
8112 16152 6.010219 ACCTTATCAACCATTATACATGCCC 58.990 40.000 0.00 0.00 0.00 5.36
8113 16153 7.883311 ACTACCTTATCAACCATTATACATGCC 59.117 37.037 0.00 0.00 0.00 4.40
8114 16154 8.848474 ACTACCTTATCAACCATTATACATGC 57.152 34.615 0.00 0.00 0.00 4.06
8131 16171 9.251440 TGCAAGACTTAAGATAAGACTACCTTA 57.749 33.333 10.09 0.00 41.23 2.69
8132 16172 8.135382 TGCAAGACTTAAGATAAGACTACCTT 57.865 34.615 10.09 0.00 38.87 3.50
8133 16173 7.719871 TGCAAGACTTAAGATAAGACTACCT 57.280 36.000 10.09 0.00 0.00 3.08
8134 16174 7.982354 ACATGCAAGACTTAAGATAAGACTACC 59.018 37.037 10.09 0.31 0.00 3.18
8135 16175 8.934507 ACATGCAAGACTTAAGATAAGACTAC 57.065 34.615 10.09 1.43 0.00 2.73
8149 16189 9.836864 TGTCATATCTAAATTACATGCAAGACT 57.163 29.630 0.00 0.00 0.00 3.24
8180 16220 9.525826 AAAGAGATGATCCATTGTAGACTTTTT 57.474 29.630 0.00 0.00 0.00 1.94
8181 16221 8.954350 CAAAGAGATGATCCATTGTAGACTTTT 58.046 33.333 0.00 0.00 0.00 2.27
8182 16222 8.105829 ACAAAGAGATGATCCATTGTAGACTTT 58.894 33.333 6.38 0.00 36.95 2.66
8183 16223 7.628234 ACAAAGAGATGATCCATTGTAGACTT 58.372 34.615 6.38 0.00 36.95 3.01
8184 16224 7.125507 AGACAAAGAGATGATCCATTGTAGACT 59.874 37.037 7.71 1.08 38.13 3.24
8185 16225 7.271511 AGACAAAGAGATGATCCATTGTAGAC 58.728 38.462 7.71 0.00 38.13 2.59
8186 16226 7.429374 AGACAAAGAGATGATCCATTGTAGA 57.571 36.000 7.71 0.00 38.13 2.59
8187 16227 9.775854 ATAAGACAAAGAGATGATCCATTGTAG 57.224 33.333 7.71 0.00 38.13 2.74
8188 16228 9.770097 GATAAGACAAAGAGATGATCCATTGTA 57.230 33.333 7.71 0.00 38.13 2.41
8189 16229 8.492782 AGATAAGACAAAGAGATGATCCATTGT 58.507 33.333 7.52 7.52 39.74 2.71
8190 16230 8.905660 AGATAAGACAAAGAGATGATCCATTG 57.094 34.615 0.00 0.00 33.55 2.82
8191 16231 9.917887 AAAGATAAGACAAAGAGATGATCCATT 57.082 29.630 0.00 0.00 0.00 3.16
8219 16259 9.975218 ACCACATTTTTAGGAATGACTAGTTAT 57.025 29.630 0.00 0.00 38.93 1.89
8220 16260 9.226606 CACCACATTTTTAGGAATGACTAGTTA 57.773 33.333 0.00 0.00 38.93 2.24
8221 16261 7.942341 TCACCACATTTTTAGGAATGACTAGTT 59.058 33.333 0.00 0.00 38.93 2.24
8222 16262 7.458397 TCACCACATTTTTAGGAATGACTAGT 58.542 34.615 0.00 0.00 38.93 2.57
8223 16263 7.824289 TCTCACCACATTTTTAGGAATGACTAG 59.176 37.037 4.76 0.00 38.93 2.57
8224 16264 7.606456 GTCTCACCACATTTTTAGGAATGACTA 59.394 37.037 4.76 0.00 38.93 2.59
8225 16265 6.431234 GTCTCACCACATTTTTAGGAATGACT 59.569 38.462 4.76 0.00 38.93 3.41
8226 16266 6.206634 TGTCTCACCACATTTTTAGGAATGAC 59.793 38.462 4.76 0.00 38.93 3.06
8227 16267 6.303054 TGTCTCACCACATTTTTAGGAATGA 58.697 36.000 4.76 0.00 38.93 2.57
8228 16268 6.573664 TGTCTCACCACATTTTTAGGAATG 57.426 37.500 0.00 0.00 41.64 2.67
8229 16269 9.479549 AATATGTCTCACCACATTTTTAGGAAT 57.520 29.630 0.00 0.00 38.07 3.01
8230 16270 8.739039 CAATATGTCTCACCACATTTTTAGGAA 58.261 33.333 0.00 0.00 38.07 3.36
8231 16271 7.888021 ACAATATGTCTCACCACATTTTTAGGA 59.112 33.333 0.00 0.00 38.07 2.94
8232 16272 7.970061 CACAATATGTCTCACCACATTTTTAGG 59.030 37.037 0.00 0.00 38.07 2.69
8233 16273 7.485913 GCACAATATGTCTCACCACATTTTTAG 59.514 37.037 0.00 0.00 38.07 1.85
8234 16274 7.176515 AGCACAATATGTCTCACCACATTTTTA 59.823 33.333 0.00 0.00 38.07 1.52
8235 16275 6.015180 AGCACAATATGTCTCACCACATTTTT 60.015 34.615 0.00 0.00 38.07 1.94
8236 16276 5.477984 AGCACAATATGTCTCACCACATTTT 59.522 36.000 0.00 0.00 38.07 1.82
8237 16277 5.012239 AGCACAATATGTCTCACCACATTT 58.988 37.500 0.00 0.00 38.07 2.32
8238 16278 4.592942 AGCACAATATGTCTCACCACATT 58.407 39.130 0.00 0.00 38.07 2.71
8239 16279 4.226427 AGCACAATATGTCTCACCACAT 57.774 40.909 0.00 0.00 40.28 3.21
8240 16280 3.701205 AGCACAATATGTCTCACCACA 57.299 42.857 0.00 0.00 0.00 4.17
8241 16281 5.419542 TCTTAGCACAATATGTCTCACCAC 58.580 41.667 0.00 0.00 0.00 4.16
8242 16282 5.422012 TCTCTTAGCACAATATGTCTCACCA 59.578 40.000 0.00 0.00 0.00 4.17
8243 16283 5.907207 TCTCTTAGCACAATATGTCTCACC 58.093 41.667 0.00 0.00 0.00 4.02
8244 16284 7.205992 TGATCTCTTAGCACAATATGTCTCAC 58.794 38.462 0.00 0.00 0.00 3.51
8245 16285 7.352079 TGATCTCTTAGCACAATATGTCTCA 57.648 36.000 0.00 0.00 0.00 3.27
8246 16286 8.306038 AGATGATCTCTTAGCACAATATGTCTC 58.694 37.037 0.00 0.00 0.00 3.36
8247 16287 8.192743 AGATGATCTCTTAGCACAATATGTCT 57.807 34.615 0.00 0.00 0.00 3.41
8248 16288 8.464770 GAGATGATCTCTTAGCACAATATGTC 57.535 38.462 14.98 0.00 40.30 3.06
8279 16319 9.574516 AGGCTTGTCTTTTCTTATTTAAGAGAA 57.425 29.630 0.71 2.51 42.66 2.87
8280 16320 9.574516 AAGGCTTGTCTTTTCTTATTTAAGAGA 57.425 29.630 0.00 0.00 42.66 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.