Multiple sequence alignment - TraesCS4B01G123600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G123600 chr4B 100.000 4494 0 0 1 4494 147364930 147369423 0.000000e+00 8299.0
1 TraesCS4B01G123600 chr4B 93.200 250 12 5 3 248 147353540 147353292 3.300000e-96 363.0
2 TraesCS4B01G123600 chr4B 91.429 70 6 0 2920 2989 604049635 604049704 3.700000e-16 97.1
3 TraesCS4B01G123600 chr4D 92.649 1578 51 29 2952 4494 103235045 103236592 0.000000e+00 2211.0
4 TraesCS4B01G123600 chr4D 93.717 939 41 7 772 1703 103232915 103233842 0.000000e+00 1391.0
5 TraesCS4B01G123600 chr4D 95.308 682 27 1 1698 2374 103233951 103234632 0.000000e+00 1077.0
6 TraesCS4B01G123600 chr4D 96.447 394 13 1 2411 2804 103234632 103235024 0.000000e+00 649.0
7 TraesCS4B01G123600 chr4D 92.829 251 15 3 1 248 201441938 201441688 1.190000e-95 361.0
8 TraesCS4B01G123600 chr4D 82.353 204 29 2 537 740 372836906 372837102 2.150000e-38 171.0
9 TraesCS4B01G123600 chr4D 79.904 209 31 5 536 742 19212111 19211912 4.690000e-30 143.0
10 TraesCS4B01G123600 chr4D 77.885 208 37 5 536 742 19209425 19209226 2.200000e-23 121.0
11 TraesCS4B01G123600 chr4A 91.677 1622 60 31 2918 4494 471931313 471929722 0.000000e+00 2178.0
12 TraesCS4B01G123600 chr4A 93.254 1008 48 13 1386 2374 471932710 471931704 0.000000e+00 1467.0
13 TraesCS4B01G123600 chr4A 88.198 627 34 14 791 1398 471933491 471932886 0.000000e+00 712.0
14 TraesCS4B01G123600 chr4A 95.685 394 16 1 2411 2804 471931704 471931312 2.280000e-177 632.0
15 TraesCS4B01G123600 chr4A 87.137 482 43 6 247 717 542234225 542234698 3.080000e-146 529.0
16 TraesCS4B01G123600 chr4A 92.430 251 15 4 3 250 683244986 683244737 5.530000e-94 355.0
17 TraesCS4B01G123600 chr4A 90.000 70 7 0 2920 2989 684585477 684585546 1.720000e-14 91.6
18 TraesCS4B01G123600 chr3A 89.431 492 35 6 247 736 684055089 684055565 4.970000e-169 604.0
19 TraesCS4B01G123600 chr3A 93.173 249 13 4 3 248 19604774 19605021 3.300000e-96 363.0
20 TraesCS4B01G123600 chr3A 89.831 118 12 0 524 641 9207266 9207383 7.790000e-33 152.0
21 TraesCS4B01G123600 chr3A 87.302 126 16 0 524 649 711039754 711039879 1.300000e-30 145.0
22 TraesCS4B01G123600 chr3A 81.395 129 18 1 612 740 714080986 714081108 2.860000e-17 100.0
23 TraesCS4B01G123600 chr1B 84.472 483 56 8 262 740 636684475 636684942 4.100000e-125 459.0
24 TraesCS4B01G123600 chr1B 87.574 169 18 3 2784 2950 558228128 558228295 4.590000e-45 193.0
25 TraesCS4B01G123600 chr1B 89.655 145 15 0 2775 2919 3239943 3240087 7.680000e-43 185.0
26 TraesCS4B01G123600 chr1B 89.116 147 15 1 2784 2929 143050407 143050261 9.930000e-42 182.0
27 TraesCS4B01G123600 chr1B 95.082 61 3 0 2918 2978 195591265 195591205 3.700000e-16 97.1
28 TraesCS4B01G123600 chr5A 87.059 340 34 3 247 584 456100849 456100518 4.240000e-100 375.0
29 TraesCS4B01G123600 chr5A 87.952 166 17 2 576 739 456100218 456100054 4.590000e-45 193.0
30 TraesCS4B01G123600 chr5A 95.918 98 4 0 1018 1115 321026121 321026024 4.650000e-35 159.0
31 TraesCS4B01G123600 chrUn 93.200 250 13 4 3 249 309589556 309589308 9.190000e-97 364.0
32 TraesCS4B01G123600 chrUn 93.200 250 13 4 3 249 361598792 361599040 9.190000e-97 364.0
33 TraesCS4B01G123600 chr3D 93.173 249 13 4 3 248 30830081 30830328 3.300000e-96 363.0
34 TraesCS4B01G123600 chr5B 92.460 252 15 4 3 251 56906556 56906306 1.540000e-94 357.0
35 TraesCS4B01G123600 chr5B 94.898 98 5 0 1018 1115 271146130 271146033 2.160000e-33 154.0
36 TraesCS4B01G123600 chr5B 77.473 182 35 5 546 723 389337390 389337211 2.210000e-18 104.0
37 TraesCS4B01G123600 chr2B 92.771 249 14 4 3 248 679642165 679642412 1.540000e-94 357.0
38 TraesCS4B01G123600 chr2B 89.116 147 15 1 2784 2930 789612203 789612058 9.930000e-42 182.0
39 TraesCS4B01G123600 chr7A 90.960 177 14 1 2788 2962 632588283 632588107 2.090000e-58 237.0
40 TraesCS4B01G123600 chr7A 88.095 126 15 0 524 649 18674583 18674708 2.800000e-32 150.0
41 TraesCS4B01G123600 chr7A 87.402 127 16 0 522 648 670012253 670012127 3.620000e-31 147.0
42 TraesCS4B01G123600 chr1D 96.721 122 4 0 2801 2922 1026739 1026860 2.120000e-48 204.0
43 TraesCS4B01G123600 chr1D 95.798 119 5 0 2802 2920 344598782 344598664 4.590000e-45 193.0
44 TraesCS4B01G123600 chr1D 95.082 61 3 0 2918 2978 141706041 141705981 3.700000e-16 97.1
45 TraesCS4B01G123600 chr6D 95.798 119 5 0 2802 2920 188888120 188888238 4.590000e-45 193.0
46 TraesCS4B01G123600 chr6D 96.721 61 2 0 2921 2981 230778659 230778599 7.950000e-18 102.0
47 TraesCS4B01G123600 chr3B 95.041 121 6 0 2799 2919 750228559 750228679 1.650000e-44 191.0
48 TraesCS4B01G123600 chr3B 84.677 124 12 2 616 739 533500842 533500726 2.840000e-22 117.0
49 TraesCS4B01G123600 chr5D 94.898 98 5 0 1018 1115 233735981 233736078 2.160000e-33 154.0
50 TraesCS4B01G123600 chr2A 93.443 61 4 0 2918 2978 569278827 569278887 1.720000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G123600 chr4B 147364930 147369423 4493 False 8299.00 8299 100.00000 1 4494 1 chr4B.!!$F1 4493
1 TraesCS4B01G123600 chr4D 103232915 103236592 3677 False 1332.00 2211 94.53025 772 4494 4 chr4D.!!$F2 3722
2 TraesCS4B01G123600 chr4A 471929722 471933491 3769 True 1247.25 2178 92.20350 791 4494 4 chr4A.!!$R2 3703
3 TraesCS4B01G123600 chr5A 456100054 456100849 795 True 284.00 375 87.50550 247 739 2 chr5A.!!$R2 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.027848 GTCCTAGTCAGCGCGTAGTC 59.972 60.000 8.43 0.0 0.00 2.59 F
46 47 0.028242 CCTAGTCAGCGCGTAGTCAG 59.972 60.000 8.43 0.0 0.00 3.51 F
108 109 0.034863 GGGCCCAACCGATCAGTTTA 60.035 55.000 19.95 0.0 40.62 2.01 F
176 177 0.179081 GCCCCGATCTTGGTACTGAC 60.179 60.000 0.00 0.0 0.00 3.51 F
687 998 0.256464 TTGTGGGGCTAATTACGGGG 59.744 55.000 0.00 0.0 0.00 5.73 F
1119 1441 0.340208 CCCTCCTCCCTGGTAGTCTT 59.660 60.000 0.00 0.0 37.07 3.01 F
1975 2612 1.021202 TGGCAAAGACGTTTCTGTGG 58.979 50.000 0.00 0.0 37.54 4.17 F
2816 3466 1.134491 CACAAATACTCCCTCCGTCCC 60.134 57.143 0.00 0.0 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1016 1335 0.896923 ATACGGCCCGAACTTGTACA 59.103 50.000 11.71 0.0 0.00 2.90 R
1149 1471 1.068541 GCAAACAAAACCCTAGAGGCG 60.069 52.381 0.00 0.0 40.58 5.52 R
1669 2192 1.427809 TGCAGGATCCGGAGATTGAT 58.572 50.000 16.86 0.0 30.90 2.57 R
1792 2429 6.535150 ACATGGTGATTTGTACATAAGAGTCG 59.465 38.462 0.00 0.0 0.00 4.18 R
2454 3104 0.322816 GAACAGCTGAATGGCAGGGA 60.323 55.000 23.35 0.0 45.03 4.20 R
2455 3105 0.609957 TGAACAGCTGAATGGCAGGG 60.610 55.000 23.35 0.0 45.03 4.45 R
2897 3547 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.0 0.00 1.89 R
4103 4790 0.565674 TTTGCCCCCTTCCCTTTTCT 59.434 50.000 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.435970 TGAGCCGGCCTCGTCCTA 62.436 66.667 26.15 0.73 43.82 2.94
31 32 3.597728 GAGCCGGCCTCGTCCTAG 61.598 72.222 26.15 0.00 33.95 3.02
32 33 4.444081 AGCCGGCCTCGTCCTAGT 62.444 66.667 26.15 0.00 33.95 2.57
33 34 3.902086 GCCGGCCTCGTCCTAGTC 61.902 72.222 18.11 0.00 33.95 2.59
34 35 2.439701 CCGGCCTCGTCCTAGTCA 60.440 66.667 0.00 0.00 33.95 3.41
35 36 2.482333 CCGGCCTCGTCCTAGTCAG 61.482 68.421 0.00 0.00 33.95 3.51
36 37 2.809010 GGCCTCGTCCTAGTCAGC 59.191 66.667 0.00 0.00 0.00 4.26
37 38 2.409651 GCCTCGTCCTAGTCAGCG 59.590 66.667 0.00 0.00 0.00 5.18
38 39 2.409651 CCTCGTCCTAGTCAGCGC 59.590 66.667 0.00 0.00 0.00 5.92
39 40 2.023461 CTCGTCCTAGTCAGCGCG 59.977 66.667 0.00 0.00 0.00 6.86
40 41 2.745100 TCGTCCTAGTCAGCGCGT 60.745 61.111 8.43 0.00 0.00 6.01
41 42 1.426816 CTCGTCCTAGTCAGCGCGTA 61.427 60.000 8.43 0.00 0.00 4.42
42 43 1.011019 CGTCCTAGTCAGCGCGTAG 60.011 63.158 8.43 0.14 0.00 3.51
43 44 1.703438 CGTCCTAGTCAGCGCGTAGT 61.703 60.000 8.43 0.00 0.00 2.73
44 45 0.027848 GTCCTAGTCAGCGCGTAGTC 59.972 60.000 8.43 0.00 0.00 2.59
45 46 0.392060 TCCTAGTCAGCGCGTAGTCA 60.392 55.000 8.43 0.00 0.00 3.41
46 47 0.028242 CCTAGTCAGCGCGTAGTCAG 59.972 60.000 8.43 0.00 0.00 3.51
47 48 0.590230 CTAGTCAGCGCGTAGTCAGC 60.590 60.000 8.43 0.00 0.00 4.26
106 107 2.355115 GGGCCCAACCGATCAGTT 59.645 61.111 19.95 0.00 40.62 3.16
107 108 1.304134 GGGCCCAACCGATCAGTTT 60.304 57.895 19.95 0.00 40.62 2.66
108 109 0.034863 GGGCCCAACCGATCAGTTTA 60.035 55.000 19.95 0.00 40.62 2.01
109 110 1.409661 GGGCCCAACCGATCAGTTTAT 60.410 52.381 19.95 0.00 40.62 1.40
110 111 1.947456 GGCCCAACCGATCAGTTTATC 59.053 52.381 0.00 0.00 0.00 1.75
111 112 2.421529 GGCCCAACCGATCAGTTTATCT 60.422 50.000 0.00 0.00 0.00 1.98
112 113 2.614057 GCCCAACCGATCAGTTTATCTG 59.386 50.000 0.00 0.00 44.85 2.90
113 114 3.873910 CCCAACCGATCAGTTTATCTGT 58.126 45.455 0.00 0.00 43.97 3.41
114 115 3.871594 CCCAACCGATCAGTTTATCTGTC 59.128 47.826 0.00 0.00 43.97 3.51
115 116 4.503910 CCAACCGATCAGTTTATCTGTCA 58.496 43.478 0.00 0.00 43.97 3.58
116 117 4.935205 CCAACCGATCAGTTTATCTGTCAA 59.065 41.667 0.00 0.00 43.97 3.18
117 118 5.586243 CCAACCGATCAGTTTATCTGTCAAT 59.414 40.000 0.00 0.00 43.97 2.57
118 119 6.761242 CCAACCGATCAGTTTATCTGTCAATA 59.239 38.462 0.00 0.00 43.97 1.90
119 120 7.254455 CCAACCGATCAGTTTATCTGTCAATAC 60.254 40.741 0.00 0.00 43.97 1.89
120 121 5.977725 ACCGATCAGTTTATCTGTCAATACG 59.022 40.000 0.00 0.00 43.97 3.06
121 122 5.977725 CCGATCAGTTTATCTGTCAATACGT 59.022 40.000 0.00 0.00 43.97 3.57
122 123 7.136772 CCGATCAGTTTATCTGTCAATACGTA 58.863 38.462 0.00 0.00 43.97 3.57
123 124 7.808381 CCGATCAGTTTATCTGTCAATACGTAT 59.192 37.037 1.14 1.14 43.97 3.06
124 125 9.821662 CGATCAGTTTATCTGTCAATACGTATA 57.178 33.333 8.83 0.00 43.97 1.47
133 134 8.997621 ATCTGTCAATACGTATAAAACACACT 57.002 30.769 8.83 0.00 0.00 3.55
134 135 8.821147 TCTGTCAATACGTATAAAACACACTT 57.179 30.769 8.83 0.00 0.00 3.16
135 136 9.263538 TCTGTCAATACGTATAAAACACACTTT 57.736 29.630 8.83 0.00 0.00 2.66
136 137 9.872757 CTGTCAATACGTATAAAACACACTTTT 57.127 29.630 8.83 0.00 0.00 2.27
159 160 2.026879 TTTTTGCAACGGCTCGCC 59.973 55.556 0.00 0.00 41.91 5.54
160 161 3.492311 TTTTTGCAACGGCTCGCCC 62.492 57.895 0.00 0.00 41.91 6.13
169 170 4.918201 GGCTCGCCCCGATCTTGG 62.918 72.222 0.00 0.00 34.61 3.61
170 171 4.162690 GCTCGCCCCGATCTTGGT 62.163 66.667 0.00 0.00 34.61 3.67
171 172 2.792947 GCTCGCCCCGATCTTGGTA 61.793 63.158 0.00 0.00 34.61 3.25
172 173 1.067582 CTCGCCCCGATCTTGGTAC 59.932 63.158 0.00 0.00 34.61 3.34
173 174 1.380785 TCGCCCCGATCTTGGTACT 60.381 57.895 0.00 0.00 0.00 2.73
174 175 1.227263 CGCCCCGATCTTGGTACTG 60.227 63.158 0.00 0.00 0.00 2.74
175 176 1.672854 CGCCCCGATCTTGGTACTGA 61.673 60.000 0.00 0.00 0.00 3.41
176 177 0.179081 GCCCCGATCTTGGTACTGAC 60.179 60.000 0.00 0.00 0.00 3.51
177 178 1.191535 CCCCGATCTTGGTACTGACA 58.808 55.000 0.00 0.00 0.00 3.58
178 179 1.134788 CCCCGATCTTGGTACTGACAC 60.135 57.143 0.00 0.00 0.00 3.67
179 180 1.469251 CCCGATCTTGGTACTGACACG 60.469 57.143 0.00 0.00 0.00 4.49
180 181 1.201647 CCGATCTTGGTACTGACACGT 59.798 52.381 0.00 0.00 0.00 4.49
181 182 2.421073 CCGATCTTGGTACTGACACGTA 59.579 50.000 0.00 0.00 0.00 3.57
182 183 3.119743 CCGATCTTGGTACTGACACGTAA 60.120 47.826 0.00 0.00 0.00 3.18
183 184 4.478699 CGATCTTGGTACTGACACGTAAA 58.521 43.478 0.00 0.00 0.00 2.01
184 185 4.919168 CGATCTTGGTACTGACACGTAAAA 59.081 41.667 0.00 0.00 0.00 1.52
185 186 5.403166 CGATCTTGGTACTGACACGTAAAAA 59.597 40.000 0.00 0.00 0.00 1.94
186 187 6.090358 CGATCTTGGTACTGACACGTAAAAAT 59.910 38.462 0.00 0.00 0.00 1.82
187 188 7.274033 CGATCTTGGTACTGACACGTAAAAATA 59.726 37.037 0.00 0.00 0.00 1.40
188 189 9.095065 GATCTTGGTACTGACACGTAAAAATAT 57.905 33.333 0.00 0.00 0.00 1.28
189 190 8.470040 TCTTGGTACTGACACGTAAAAATATC 57.530 34.615 0.00 0.00 0.00 1.63
190 191 8.089597 TCTTGGTACTGACACGTAAAAATATCA 58.910 33.333 0.00 0.00 0.00 2.15
191 192 8.604640 TTGGTACTGACACGTAAAAATATCAA 57.395 30.769 0.00 0.00 0.00 2.57
192 193 8.780846 TGGTACTGACACGTAAAAATATCAAT 57.219 30.769 0.00 0.00 0.00 2.57
193 194 8.875803 TGGTACTGACACGTAAAAATATCAATC 58.124 33.333 0.00 0.00 0.00 2.67
194 195 9.095065 GGTACTGACACGTAAAAATATCAATCT 57.905 33.333 0.00 0.00 0.00 2.40
197 198 8.450964 ACTGACACGTAAAAATATCAATCTTGG 58.549 33.333 0.00 0.00 0.00 3.61
198 199 8.330466 TGACACGTAAAAATATCAATCTTGGT 57.670 30.769 0.00 0.00 0.00 3.67
199 200 9.438228 TGACACGTAAAAATATCAATCTTGGTA 57.562 29.630 0.00 0.00 0.00 3.25
200 201 9.698617 GACACGTAAAAATATCAATCTTGGTAC 57.301 33.333 0.00 0.00 0.00 3.34
201 202 9.221933 ACACGTAAAAATATCAATCTTGGTACA 57.778 29.630 0.00 0.00 0.00 2.90
217 218 3.193267 TGGTACAAATCTGCTTCCAATGC 59.807 43.478 0.00 0.00 31.92 3.56
218 219 3.429410 GGTACAAATCTGCTTCCAATGCC 60.429 47.826 0.00 0.00 0.00 4.40
219 220 1.551883 ACAAATCTGCTTCCAATGCCC 59.448 47.619 0.00 0.00 0.00 5.36
220 221 1.551430 CAAATCTGCTTCCAATGCCCA 59.449 47.619 0.00 0.00 0.00 5.36
221 222 1.941377 AATCTGCTTCCAATGCCCAA 58.059 45.000 0.00 0.00 0.00 4.12
222 223 2.170012 ATCTGCTTCCAATGCCCAAT 57.830 45.000 0.00 0.00 0.00 3.16
223 224 1.941377 TCTGCTTCCAATGCCCAATT 58.059 45.000 0.00 0.00 0.00 2.32
224 225 1.551430 TCTGCTTCCAATGCCCAATTG 59.449 47.619 0.00 0.00 44.60 2.32
225 226 1.276989 CTGCTTCCAATGCCCAATTGT 59.723 47.619 4.43 0.00 43.66 2.71
226 227 1.002201 TGCTTCCAATGCCCAATTGTG 59.998 47.619 4.43 0.00 43.66 3.33
227 228 1.676615 GCTTCCAATGCCCAATTGTGG 60.677 52.381 4.43 5.22 43.66 4.17
228 229 1.624813 CTTCCAATGCCCAATTGTGGT 59.375 47.619 10.79 0.00 43.66 4.16
229 230 2.612285 TCCAATGCCCAATTGTGGTA 57.388 45.000 10.79 8.56 43.66 3.25
230 231 2.175202 TCCAATGCCCAATTGTGGTAC 58.825 47.619 10.79 0.00 43.66 3.34
231 232 2.178580 CCAATGCCCAATTGTGGTACT 58.821 47.619 4.43 0.00 43.66 2.73
232 233 2.566724 CCAATGCCCAATTGTGGTACTT 59.433 45.455 4.43 0.46 43.66 2.24
233 234 3.368323 CCAATGCCCAATTGTGGTACTTC 60.368 47.826 4.43 0.00 43.66 3.01
234 235 2.969821 TGCCCAATTGTGGTACTTCT 57.030 45.000 4.43 0.00 44.30 2.85
235 236 2.513753 TGCCCAATTGTGGTACTTCTG 58.486 47.619 4.43 0.00 44.30 3.02
236 237 2.158534 TGCCCAATTGTGGTACTTCTGT 60.159 45.455 4.43 0.00 44.30 3.41
237 238 2.228822 GCCCAATTGTGGTACTTCTGTG 59.771 50.000 4.43 0.00 44.30 3.66
238 239 2.228822 CCCAATTGTGGTACTTCTGTGC 59.771 50.000 4.43 0.00 44.30 4.57
239 240 2.884012 CCAATTGTGGTACTTCTGTGCA 59.116 45.455 4.43 0.00 40.42 4.57
240 241 3.317711 CCAATTGTGGTACTTCTGTGCAA 59.682 43.478 4.43 0.00 40.42 4.08
241 242 4.022068 CCAATTGTGGTACTTCTGTGCAAT 60.022 41.667 4.43 0.00 40.42 3.56
242 243 5.509501 CCAATTGTGGTACTTCTGTGCAATT 60.510 40.000 4.43 0.00 40.42 2.32
243 244 5.789643 ATTGTGGTACTTCTGTGCAATTT 57.210 34.783 0.00 0.00 0.00 1.82
244 245 6.892658 ATTGTGGTACTTCTGTGCAATTTA 57.107 33.333 0.00 0.00 0.00 1.40
245 246 5.682943 TGTGGTACTTCTGTGCAATTTAC 57.317 39.130 0.00 0.00 0.00 2.01
246 247 5.373222 TGTGGTACTTCTGTGCAATTTACT 58.627 37.500 0.00 0.00 0.00 2.24
247 248 5.468746 TGTGGTACTTCTGTGCAATTTACTC 59.531 40.000 0.00 0.00 0.00 2.59
248 249 5.468746 GTGGTACTTCTGTGCAATTTACTCA 59.531 40.000 0.00 0.00 0.00 3.41
249 250 6.017440 GTGGTACTTCTGTGCAATTTACTCAA 60.017 38.462 0.00 0.00 0.00 3.02
250 251 6.017440 TGGTACTTCTGTGCAATTTACTCAAC 60.017 38.462 0.00 0.00 0.00 3.18
251 252 6.017440 GGTACTTCTGTGCAATTTACTCAACA 60.017 38.462 0.00 0.00 0.00 3.33
252 253 6.639632 ACTTCTGTGCAATTTACTCAACAT 57.360 33.333 0.00 0.00 0.00 2.71
258 259 3.193267 TGCAATTTACTCAACATGGAGCC 59.807 43.478 0.00 0.00 38.50 4.70
260 261 1.448985 TTTACTCAACATGGAGCCGC 58.551 50.000 0.00 0.00 38.50 6.53
276 277 4.057428 GCAGTCGACGCCTCCTGT 62.057 66.667 17.73 0.00 0.00 4.00
278 279 3.063084 AGTCGACGCCTCCTGTCC 61.063 66.667 10.46 0.00 32.68 4.02
280 281 3.371063 TCGACGCCTCCTGTCCAC 61.371 66.667 0.00 0.00 32.68 4.02
281 282 3.680786 CGACGCCTCCTGTCCACA 61.681 66.667 0.00 0.00 32.68 4.17
283 284 3.941657 GACGCCTCCTGTCCACAGC 62.942 68.421 0.76 0.00 42.47 4.40
290 291 0.539669 TCCTGTCCACAGCGAGAGAA 60.540 55.000 0.76 0.00 42.47 2.87
293 294 1.216710 GTCCACAGCGAGAGAAGGG 59.783 63.158 0.00 0.00 0.00 3.95
375 378 4.794648 TGCGCCGGGAAGATTGGG 62.795 66.667 4.18 0.00 0.00 4.12
382 385 2.355115 GGAAGATTGGGCGTGGGT 59.645 61.111 0.00 0.00 0.00 4.51
383 386 2.046285 GGAAGATTGGGCGTGGGTG 61.046 63.158 0.00 0.00 0.00 4.61
384 387 1.002624 GAAGATTGGGCGTGGGTGA 60.003 57.895 0.00 0.00 0.00 4.02
385 388 1.002134 AAGATTGGGCGTGGGTGAG 60.002 57.895 0.00 0.00 0.00 3.51
386 389 2.438434 GATTGGGCGTGGGTGAGG 60.438 66.667 0.00 0.00 0.00 3.86
387 390 3.995506 GATTGGGCGTGGGTGAGGG 62.996 68.421 0.00 0.00 0.00 4.30
396 399 2.689034 GGGTGAGGGACTGAGGGG 60.689 72.222 0.00 0.00 41.55 4.79
402 405 3.155167 GGGACTGAGGGGTAGGCG 61.155 72.222 0.00 0.00 0.00 5.52
458 461 4.431131 CCCAACAGGCAGCGGGAT 62.431 66.667 0.00 0.00 41.62 3.85
494 497 4.318546 CGGGCGATTAGTTTCCTATTTTCG 60.319 45.833 0.00 0.00 0.00 3.46
499 502 4.828291 TTAGTTTCCTATTTTCGCGTCG 57.172 40.909 5.77 0.00 0.00 5.12
513 516 1.138036 CGTCGCGTGATTAGGGTGA 59.862 57.895 5.77 0.00 0.00 4.02
518 521 1.498865 GCGTGATTAGGGTGATGCGG 61.499 60.000 0.00 0.00 0.00 5.69
522 525 0.600255 GATTAGGGTGATGCGGGTCG 60.600 60.000 0.00 0.00 0.00 4.79
530 533 0.537653 TGATGCGGGTCGTGGAATTA 59.462 50.000 0.00 0.00 0.00 1.40
543 546 6.017357 GGTCGTGGAATTACATATTTTCCTCC 60.017 42.308 0.00 0.00 39.72 4.30
545 548 5.560183 CGTGGAATTACATATTTTCCTCCGC 60.560 44.000 0.00 0.00 39.72 5.54
563 566 1.962144 CGGTGGAGTACGGTCAGTT 59.038 57.895 0.00 0.00 0.00 3.16
647 958 1.640917 AGTGGGACTAATCGTGTGGT 58.359 50.000 0.00 0.00 0.00 4.16
662 973 2.141448 TGGTGTTGGCTGGGTCGTA 61.141 57.895 0.00 0.00 0.00 3.43
663 974 1.670083 GGTGTTGGCTGGGTCGTAC 60.670 63.158 0.00 0.00 0.00 3.67
684 995 1.741145 GGTGTTGTGGGGCTAATTACG 59.259 52.381 0.00 0.00 0.00 3.18
687 998 0.256464 TTGTGGGGCTAATTACGGGG 59.744 55.000 0.00 0.00 0.00 5.73
692 1003 1.099295 GGGCTAATTACGGGGTGCAC 61.099 60.000 8.80 8.80 0.00 4.57
701 1012 0.601841 ACGGGGTGCACGTAAGAAAG 60.602 55.000 11.45 0.00 43.60 2.62
702 1013 0.601841 CGGGGTGCACGTAAGAAAGT 60.602 55.000 11.45 0.00 43.62 2.66
703 1014 1.601166 GGGGTGCACGTAAGAAAGTT 58.399 50.000 11.45 0.00 43.62 2.66
704 1015 1.534163 GGGGTGCACGTAAGAAAGTTC 59.466 52.381 11.45 0.00 43.62 3.01
705 1016 2.490991 GGGTGCACGTAAGAAAGTTCT 58.509 47.619 11.45 0.00 43.62 3.01
707 1018 3.303791 GGGTGCACGTAAGAAAGTTCTTG 60.304 47.826 11.45 3.63 46.34 3.02
717 1028 8.696175 ACGTAAGAAAGTTCTTGTTTTTGTTTG 58.304 29.630 15.09 0.00 46.34 2.93
725 1036 9.662545 AAGTTCTTGTTTTTGTTTGATTGTTTG 57.337 25.926 0.00 0.00 0.00 2.93
735 1046 9.743057 TTTTGTTTGATTGTTTGATAGTAGTGG 57.257 29.630 0.00 0.00 0.00 4.00
736 1047 8.458573 TTGTTTGATTGTTTGATAGTAGTGGT 57.541 30.769 0.00 0.00 0.00 4.16
737 1048 7.870826 TGTTTGATTGTTTGATAGTAGTGGTG 58.129 34.615 0.00 0.00 0.00 4.17
738 1049 7.717436 TGTTTGATTGTTTGATAGTAGTGGTGA 59.283 33.333 0.00 0.00 0.00 4.02
739 1050 8.730680 GTTTGATTGTTTGATAGTAGTGGTGAT 58.269 33.333 0.00 0.00 0.00 3.06
740 1051 8.862325 TTGATTGTTTGATAGTAGTGGTGATT 57.138 30.769 0.00 0.00 0.00 2.57
741 1052 9.952030 TTGATTGTTTGATAGTAGTGGTGATTA 57.048 29.630 0.00 0.00 0.00 1.75
742 1053 9.378551 TGATTGTTTGATAGTAGTGGTGATTAC 57.621 33.333 0.00 0.00 0.00 1.89
743 1054 9.601217 GATTGTTTGATAGTAGTGGTGATTACT 57.399 33.333 0.00 0.00 34.64 2.24
744 1055 8.771920 TTGTTTGATAGTAGTGGTGATTACTG 57.228 34.615 0.00 0.00 32.64 2.74
745 1056 7.327975 TGTTTGATAGTAGTGGTGATTACTGG 58.672 38.462 0.00 0.00 32.64 4.00
746 1057 5.531122 TGATAGTAGTGGTGATTACTGGC 57.469 43.478 0.00 0.00 32.64 4.85
747 1058 5.208890 TGATAGTAGTGGTGATTACTGGCT 58.791 41.667 0.00 0.00 32.64 4.75
748 1059 6.370453 TGATAGTAGTGGTGATTACTGGCTA 58.630 40.000 0.00 0.00 32.64 3.93
749 1060 7.010771 TGATAGTAGTGGTGATTACTGGCTAT 58.989 38.462 0.00 0.00 33.99 2.97
750 1061 5.537300 AGTAGTGGTGATTACTGGCTATG 57.463 43.478 0.00 0.00 0.00 2.23
751 1062 3.199880 AGTGGTGATTACTGGCTATGC 57.800 47.619 0.00 0.00 0.00 3.14
752 1063 2.505407 AGTGGTGATTACTGGCTATGCA 59.495 45.455 0.00 0.00 0.00 3.96
753 1064 3.137176 AGTGGTGATTACTGGCTATGCAT 59.863 43.478 3.79 3.79 0.00 3.96
754 1065 3.499918 GTGGTGATTACTGGCTATGCATC 59.500 47.826 0.19 0.00 0.00 3.91
755 1066 3.392285 TGGTGATTACTGGCTATGCATCT 59.608 43.478 0.19 0.00 0.00 2.90
756 1067 4.592778 TGGTGATTACTGGCTATGCATCTA 59.407 41.667 0.19 0.00 0.00 1.98
757 1068 5.071653 TGGTGATTACTGGCTATGCATCTAA 59.928 40.000 0.19 0.00 0.00 2.10
758 1069 5.997746 GGTGATTACTGGCTATGCATCTAAA 59.002 40.000 0.19 0.00 0.00 1.85
759 1070 6.486657 GGTGATTACTGGCTATGCATCTAAAA 59.513 38.462 0.19 0.00 0.00 1.52
760 1071 7.013274 GGTGATTACTGGCTATGCATCTAAAAA 59.987 37.037 0.19 0.00 0.00 1.94
850 1169 4.577246 GCTCTCGGCCGGCTGTAG 62.577 72.222 33.59 29.35 34.27 2.74
897 1216 1.383248 CTCCCGGTCTCCCCAATCT 60.383 63.158 0.00 0.00 0.00 2.40
962 1281 2.182030 CGTGCTCCGTCTTCTCCC 59.818 66.667 0.00 0.00 0.00 4.30
1119 1441 0.340208 CCCTCCTCCCTGGTAGTCTT 59.660 60.000 0.00 0.00 37.07 3.01
1128 1450 1.471119 CTGGTAGTCTTGACGCCCTA 58.529 55.000 12.23 0.00 0.00 3.53
1149 1471 2.363018 GCCCCTTTCCCTTGCCTC 60.363 66.667 0.00 0.00 0.00 4.70
1220 1542 3.632604 CCTGACTTAGAATCACGCTAGGA 59.367 47.826 0.00 0.00 0.00 2.94
1221 1543 4.498345 CCTGACTTAGAATCACGCTAGGAC 60.498 50.000 0.00 0.00 0.00 3.85
1222 1544 3.064958 TGACTTAGAATCACGCTAGGACG 59.935 47.826 0.00 0.00 39.50 4.79
1223 1545 2.223525 ACTTAGAATCACGCTAGGACGC 60.224 50.000 0.00 0.00 36.19 5.19
1224 1546 1.676746 TAGAATCACGCTAGGACGCT 58.323 50.000 0.00 0.00 36.19 5.07
1557 2080 1.338136 GGATCCCCTTCTCCGAAGCA 61.338 60.000 0.00 0.00 0.00 3.91
1566 2089 5.123227 CCCTTCTCCGAAGCATAAACATTA 58.877 41.667 0.00 0.00 0.00 1.90
1669 2192 1.541310 CGGCACAGGGTTCCTAGTCA 61.541 60.000 0.00 0.00 29.64 3.41
1678 2201 3.970640 AGGGTTCCTAGTCATCAATCTCC 59.029 47.826 0.00 0.00 28.47 3.71
1728 2365 3.865745 CGTGCCTTCCTATGTAGTTCTTG 59.134 47.826 0.00 0.00 0.00 3.02
1741 2378 9.710900 CTATGTAGTTCTTGCACATATAATCCA 57.289 33.333 0.00 0.00 35.28 3.41
1792 2429 8.726870 AAAATCCATTCCATTCAATCACATTC 57.273 30.769 0.00 0.00 0.00 2.67
1858 2495 7.499321 TGTTTCTGTTACCATTTTGTACGAT 57.501 32.000 0.00 0.00 0.00 3.73
1859 2496 7.356540 TGTTTCTGTTACCATTTTGTACGATG 58.643 34.615 0.00 0.00 0.00 3.84
1862 2499 3.125487 TGTTACCATTTTGTACGATGGCG 59.875 43.478 17.72 0.00 45.36 5.69
1973 2610 3.380004 TGATTTGGCAAAGACGTTTCTGT 59.620 39.130 18.61 0.00 29.98 3.41
1975 2612 1.021202 TGGCAAAGACGTTTCTGTGG 58.979 50.000 0.00 0.00 37.54 4.17
2261 2898 7.880713 TGTATGTGAGTGGCTTATAAAAAGTGA 59.119 33.333 0.00 0.00 0.00 3.41
2286 2923 9.226345 GATTGAAACATCCGTCATTAATTCTTC 57.774 33.333 0.00 0.00 0.00 2.87
2344 2994 9.731819 CAACCAATTGATCTTCATCTTCTTATG 57.268 33.333 7.12 0.00 38.15 1.90
2347 2997 8.910944 CCAATTGATCTTCATCTTCTTATGGTT 58.089 33.333 7.12 0.00 0.00 3.67
2373 3023 3.599343 TGTATGCAGCAGTTAGTTCCAG 58.401 45.455 0.00 0.00 0.00 3.86
2374 3024 2.867109 ATGCAGCAGTTAGTTCCAGT 57.133 45.000 0.00 0.00 0.00 4.00
2375 3025 1.882912 TGCAGCAGTTAGTTCCAGTG 58.117 50.000 0.00 0.00 0.00 3.66
2376 3026 1.140852 TGCAGCAGTTAGTTCCAGTGT 59.859 47.619 0.00 0.00 0.00 3.55
2377 3027 1.532868 GCAGCAGTTAGTTCCAGTGTG 59.467 52.381 0.00 0.00 0.00 3.82
2378 3028 1.532868 CAGCAGTTAGTTCCAGTGTGC 59.467 52.381 0.00 0.00 0.00 4.57
2379 3029 1.140852 AGCAGTTAGTTCCAGTGTGCA 59.859 47.619 0.00 0.00 31.75 4.57
2380 3030 1.946768 GCAGTTAGTTCCAGTGTGCAA 59.053 47.619 0.00 0.00 0.00 4.08
2381 3031 2.287009 GCAGTTAGTTCCAGTGTGCAAC 60.287 50.000 0.00 0.00 37.35 4.17
2382 3032 2.290641 CAGTTAGTTCCAGTGTGCAACC 59.709 50.000 0.00 0.00 34.36 3.77
2383 3033 2.172717 AGTTAGTTCCAGTGTGCAACCT 59.827 45.455 0.00 0.00 34.36 3.50
2384 3034 3.389983 AGTTAGTTCCAGTGTGCAACCTA 59.610 43.478 0.00 0.00 34.36 3.08
2385 3035 4.041691 AGTTAGTTCCAGTGTGCAACCTAT 59.958 41.667 0.00 0.00 34.36 2.57
2386 3036 3.508845 AGTTCCAGTGTGCAACCTATT 57.491 42.857 0.00 0.00 34.36 1.73
2387 3037 3.412386 AGTTCCAGTGTGCAACCTATTC 58.588 45.455 0.00 0.00 34.36 1.75
2388 3038 3.146066 GTTCCAGTGTGCAACCTATTCA 58.854 45.455 0.00 0.00 34.36 2.57
2389 3039 3.719268 TCCAGTGTGCAACCTATTCAT 57.281 42.857 0.00 0.00 34.36 2.57
2390 3040 4.835284 TCCAGTGTGCAACCTATTCATA 57.165 40.909 0.00 0.00 34.36 2.15
2391 3041 4.513442 TCCAGTGTGCAACCTATTCATAC 58.487 43.478 0.00 0.00 34.36 2.39
2392 3042 4.225042 TCCAGTGTGCAACCTATTCATACT 59.775 41.667 0.00 0.00 34.36 2.12
2393 3043 4.333649 CCAGTGTGCAACCTATTCATACTG 59.666 45.833 10.15 10.15 44.32 2.74
2394 3044 5.178061 CAGTGTGCAACCTATTCATACTGA 58.822 41.667 11.25 0.00 46.19 3.41
2395 3045 5.819379 CAGTGTGCAACCTATTCATACTGAT 59.181 40.000 11.25 0.00 46.19 2.90
2396 3046 6.986231 CAGTGTGCAACCTATTCATACTGATA 59.014 38.462 11.25 0.00 46.19 2.15
2397 3047 7.658982 CAGTGTGCAACCTATTCATACTGATAT 59.341 37.037 11.25 0.00 46.19 1.63
2398 3048 8.870116 AGTGTGCAACCTATTCATACTGATATA 58.130 33.333 0.00 0.00 32.27 0.86
2399 3049 9.658799 GTGTGCAACCTATTCATACTGATATAT 57.341 33.333 0.00 0.00 34.36 0.86
2400 3050 9.657419 TGTGCAACCTATTCATACTGATATATG 57.343 33.333 0.00 0.00 34.36 1.78
2401 3051 8.607459 GTGCAACCTATTCATACTGATATATGC 58.393 37.037 0.00 0.00 33.31 3.14
2402 3052 8.320617 TGCAACCTATTCATACTGATATATGCA 58.679 33.333 0.00 0.00 33.31 3.96
2403 3053 8.607459 GCAACCTATTCATACTGATATATGCAC 58.393 37.037 0.00 0.00 33.31 4.57
2404 3054 9.881649 CAACCTATTCATACTGATATATGCACT 57.118 33.333 0.00 0.00 33.31 4.40
2446 3096 5.112129 ACTTGAGGTAATACCCCATTGTC 57.888 43.478 5.71 0.00 39.75 3.18
2779 3429 6.861055 CAGCGTCCAAATTTTATGTAGTTTGT 59.139 34.615 0.00 0.00 31.42 2.83
2803 3453 4.346730 TCTACTCCCTCCGTTCACAAATA 58.653 43.478 0.00 0.00 0.00 1.40
2804 3454 3.329929 ACTCCCTCCGTTCACAAATAC 57.670 47.619 0.00 0.00 0.00 1.89
2805 3455 2.904434 ACTCCCTCCGTTCACAAATACT 59.096 45.455 0.00 0.00 0.00 2.12
2806 3456 3.056035 ACTCCCTCCGTTCACAAATACTC 60.056 47.826 0.00 0.00 0.00 2.59
2807 3457 2.235402 TCCCTCCGTTCACAAATACTCC 59.765 50.000 0.00 0.00 0.00 3.85
2808 3458 2.629051 CCTCCGTTCACAAATACTCCC 58.371 52.381 0.00 0.00 0.00 4.30
2809 3459 2.236395 CCTCCGTTCACAAATACTCCCT 59.764 50.000 0.00 0.00 0.00 4.20
2810 3460 3.522553 CTCCGTTCACAAATACTCCCTC 58.477 50.000 0.00 0.00 0.00 4.30
2811 3461 2.235402 TCCGTTCACAAATACTCCCTCC 59.765 50.000 0.00 0.00 0.00 4.30
2812 3462 2.268298 CGTTCACAAATACTCCCTCCG 58.732 52.381 0.00 0.00 0.00 4.63
2813 3463 2.353406 CGTTCACAAATACTCCCTCCGT 60.353 50.000 0.00 0.00 0.00 4.69
2814 3464 3.259902 GTTCACAAATACTCCCTCCGTC 58.740 50.000 0.00 0.00 0.00 4.79
2815 3465 1.829222 TCACAAATACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
2816 3466 1.134491 CACAAATACTCCCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
2817 3467 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
2818 3468 1.557832 CAAATACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
2819 3469 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2820 3470 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2821 3471 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2822 3472 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2823 3473 1.558294 ACTCCCTCCGTCCCAAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
2824 3474 1.838077 CTCCCTCCGTCCCAAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
2825 3475 2.238898 CTCCCTCCGTCCCAAAATACTT 59.761 50.000 0.00 0.00 0.00 2.24
2826 3476 2.026636 TCCCTCCGTCCCAAAATACTTG 60.027 50.000 0.00 0.00 0.00 3.16
2827 3477 2.290705 CCCTCCGTCCCAAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
2828 3478 3.007635 CCTCCGTCCCAAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
2829 3479 2.671396 CTCCGTCCCAAAATACTTGTCG 59.329 50.000 0.00 0.00 0.00 4.35
2830 3480 1.735571 CCGTCCCAAAATACTTGTCGG 59.264 52.381 0.00 0.00 0.00 4.79
2831 3481 2.613474 CCGTCCCAAAATACTTGTCGGA 60.613 50.000 0.00 0.00 38.03 4.55
2832 3482 2.671396 CGTCCCAAAATACTTGTCGGAG 59.329 50.000 0.00 0.00 0.00 4.63
2833 3483 3.615592 CGTCCCAAAATACTTGTCGGAGA 60.616 47.826 0.00 0.00 0.00 3.71
2834 3484 4.320870 GTCCCAAAATACTTGTCGGAGAA 58.679 43.478 0.00 0.00 39.69 2.87
2835 3485 4.758165 GTCCCAAAATACTTGTCGGAGAAA 59.242 41.667 0.00 0.00 39.69 2.52
2836 3486 5.414765 GTCCCAAAATACTTGTCGGAGAAAT 59.585 40.000 0.00 0.00 39.69 2.17
2837 3487 5.414454 TCCCAAAATACTTGTCGGAGAAATG 59.586 40.000 0.00 0.00 39.69 2.32
2838 3488 5.393027 CCCAAAATACTTGTCGGAGAAATGG 60.393 44.000 0.00 0.00 39.69 3.16
2839 3489 5.414454 CCAAAATACTTGTCGGAGAAATGGA 59.586 40.000 0.00 0.00 39.69 3.41
2840 3490 6.095440 CCAAAATACTTGTCGGAGAAATGGAT 59.905 38.462 0.00 0.00 39.69 3.41
2841 3491 7.282224 CCAAAATACTTGTCGGAGAAATGGATA 59.718 37.037 0.00 0.00 39.69 2.59
2842 3492 8.673711 CAAAATACTTGTCGGAGAAATGGATAA 58.326 33.333 0.00 0.00 39.69 1.75
2843 3493 8.801882 AAATACTTGTCGGAGAAATGGATAAA 57.198 30.769 0.00 0.00 39.69 1.40
2844 3494 8.801882 AATACTTGTCGGAGAAATGGATAAAA 57.198 30.769 0.00 0.00 39.69 1.52
2845 3495 8.980481 ATACTTGTCGGAGAAATGGATAAAAT 57.020 30.769 0.00 0.00 39.69 1.82
2846 3496 7.703058 ACTTGTCGGAGAAATGGATAAAATT 57.297 32.000 0.00 0.00 39.69 1.82
2847 3497 7.538575 ACTTGTCGGAGAAATGGATAAAATTG 58.461 34.615 0.00 0.00 39.69 2.32
2848 3498 6.449635 TGTCGGAGAAATGGATAAAATTGG 57.550 37.500 0.00 0.00 39.69 3.16
2849 3499 6.184068 TGTCGGAGAAATGGATAAAATTGGA 58.816 36.000 0.00 0.00 39.69 3.53
2850 3500 6.833416 TGTCGGAGAAATGGATAAAATTGGAT 59.167 34.615 0.00 0.00 39.69 3.41
2851 3501 7.141363 GTCGGAGAAATGGATAAAATTGGATG 58.859 38.462 0.00 0.00 39.69 3.51
2852 3502 6.833416 TCGGAGAAATGGATAAAATTGGATGT 59.167 34.615 0.00 0.00 0.00 3.06
2853 3503 7.996066 TCGGAGAAATGGATAAAATTGGATGTA 59.004 33.333 0.00 0.00 0.00 2.29
2854 3504 8.796475 CGGAGAAATGGATAAAATTGGATGTAT 58.204 33.333 0.00 0.00 0.00 2.29
2884 3534 8.523915 AACTAAAATACATCCAGATTCATGCA 57.476 30.769 0.00 0.00 0.00 3.96
2885 3535 8.701908 ACTAAAATACATCCAGATTCATGCAT 57.298 30.769 0.00 0.00 0.00 3.96
2886 3536 9.139734 ACTAAAATACATCCAGATTCATGCATT 57.860 29.630 0.00 0.00 0.00 3.56
2887 3537 9.976511 CTAAAATACATCCAGATTCATGCATTT 57.023 29.630 0.00 0.00 30.42 2.32
2888 3538 8.882415 AAAATACATCCAGATTCATGCATTTC 57.118 30.769 0.00 0.00 28.64 2.17
2889 3539 7.834881 AATACATCCAGATTCATGCATTTCT 57.165 32.000 0.00 0.00 0.00 2.52
2890 3540 5.769484 ACATCCAGATTCATGCATTTCTC 57.231 39.130 0.00 0.00 0.00 2.87
2891 3541 4.583489 ACATCCAGATTCATGCATTTCTCC 59.417 41.667 0.00 0.00 0.00 3.71
2892 3542 3.208594 TCCAGATTCATGCATTTCTCCG 58.791 45.455 0.00 0.00 0.00 4.63
2893 3543 3.118298 TCCAGATTCATGCATTTCTCCGA 60.118 43.478 0.00 0.00 0.00 4.55
2894 3544 3.003068 CCAGATTCATGCATTTCTCCGAC 59.997 47.826 0.00 0.00 0.00 4.79
2895 3545 3.624410 CAGATTCATGCATTTCTCCGACA 59.376 43.478 0.00 0.00 0.00 4.35
2896 3546 4.095334 CAGATTCATGCATTTCTCCGACAA 59.905 41.667 0.00 0.00 0.00 3.18
2897 3547 4.334759 AGATTCATGCATTTCTCCGACAAG 59.665 41.667 0.00 0.00 0.00 3.16
2898 3548 3.057969 TCATGCATTTCTCCGACAAGT 57.942 42.857 0.00 0.00 0.00 3.16
2899 3549 4.200838 TCATGCATTTCTCCGACAAGTA 57.799 40.909 0.00 0.00 0.00 2.24
2900 3550 4.769688 TCATGCATTTCTCCGACAAGTAT 58.230 39.130 0.00 0.00 0.00 2.12
2901 3551 5.185454 TCATGCATTTCTCCGACAAGTATT 58.815 37.500 0.00 0.00 0.00 1.89
2902 3552 5.647658 TCATGCATTTCTCCGACAAGTATTT 59.352 36.000 0.00 0.00 0.00 1.40
2903 3553 5.957842 TGCATTTCTCCGACAAGTATTTT 57.042 34.783 0.00 0.00 0.00 1.82
2904 3554 5.938322 TGCATTTCTCCGACAAGTATTTTC 58.062 37.500 0.00 0.00 0.00 2.29
2905 3555 5.022021 GCATTTCTCCGACAAGTATTTTCG 58.978 41.667 0.00 0.00 0.00 3.46
2911 3561 2.598589 CGACAAGTATTTTCGGACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2912 3562 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2913 3563 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2914 3564 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2915 3565 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2916 3566 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2917 3567 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2931 3581 4.511826 CGGAGGGAGTATAAGATGTTTTGC 59.488 45.833 0.00 0.00 0.00 3.68
2932 3582 4.822350 GGAGGGAGTATAAGATGTTTTGCC 59.178 45.833 0.00 0.00 0.00 4.52
2981 3631 7.808856 CGTCTTATATTTAGGAACAGAGGTAGC 59.191 40.741 0.00 0.00 0.00 3.58
3022 3672 6.549364 TCACCTTATTGATTTTCCTGTTGTGT 59.451 34.615 0.00 0.00 0.00 3.72
3023 3673 6.642131 CACCTTATTGATTTTCCTGTTGTGTG 59.358 38.462 0.00 0.00 0.00 3.82
3252 3904 3.267031 TCCCCAGGAAGAAAGGAGATTTC 59.733 47.826 0.00 0.00 46.52 2.17
3375 4027 5.181690 TGTCATTTTGCCTTGTAACAGAC 57.818 39.130 0.00 0.00 0.00 3.51
3380 4032 2.148916 TGCCTTGTAACAGACTGACG 57.851 50.000 10.08 0.00 0.00 4.35
3381 4033 1.411246 TGCCTTGTAACAGACTGACGT 59.589 47.619 10.08 0.00 0.00 4.34
3382 4034 1.792949 GCCTTGTAACAGACTGACGTG 59.207 52.381 10.08 0.00 0.00 4.49
3383 4035 2.545113 GCCTTGTAACAGACTGACGTGA 60.545 50.000 10.08 0.00 0.00 4.35
3384 4036 3.713288 CCTTGTAACAGACTGACGTGAA 58.287 45.455 10.08 0.00 0.00 3.18
3385 4037 4.116961 CCTTGTAACAGACTGACGTGAAA 58.883 43.478 10.08 0.00 0.00 2.69
3421 4073 5.491982 GAAATGAAGGAGAAGCTTGACCTA 58.508 41.667 17.76 7.25 32.06 3.08
3424 4076 4.357325 TGAAGGAGAAGCTTGACCTAGAT 58.643 43.478 17.76 6.28 32.06 1.98
3480 4132 1.001760 ATGAGGCCACCGAGTACCT 59.998 57.895 5.01 0.00 34.43 3.08
3492 4144 2.520979 CGAGTACCTCGCTCTTTTCTG 58.479 52.381 0.20 0.00 46.75 3.02
3493 4145 2.161808 CGAGTACCTCGCTCTTTTCTGA 59.838 50.000 0.20 0.00 46.75 3.27
3495 4147 4.109050 GAGTACCTCGCTCTTTTCTGATG 58.891 47.826 0.00 0.00 0.00 3.07
3496 4148 3.764434 AGTACCTCGCTCTTTTCTGATGA 59.236 43.478 0.00 0.00 0.00 2.92
3497 4149 3.685139 ACCTCGCTCTTTTCTGATGAA 57.315 42.857 0.00 0.00 0.00 2.57
3565 4243 1.868997 CTTGTCCTTGATTGCGCGT 59.131 52.632 8.43 0.00 0.00 6.01
3625 4303 4.949856 GTCCAAATCTGATGTGGTGGTATT 59.050 41.667 23.06 0.00 33.88 1.89
3631 4309 3.008923 TCTGATGTGGTGGTATTGCTTCA 59.991 43.478 0.00 0.00 0.00 3.02
3692 4370 3.607209 GGAGATCACTTGTTCGTCGTAAC 59.393 47.826 0.00 0.00 0.00 2.50
3693 4371 4.474113 GAGATCACTTGTTCGTCGTAACT 58.526 43.478 0.00 0.00 0.00 2.24
3694 4372 4.474113 AGATCACTTGTTCGTCGTAACTC 58.526 43.478 0.00 0.00 0.00 3.01
3695 4373 2.642995 TCACTTGTTCGTCGTAACTCG 58.357 47.619 0.00 0.00 41.41 4.18
3696 4374 2.032054 TCACTTGTTCGTCGTAACTCGT 59.968 45.455 0.00 0.00 40.80 4.18
3697 4375 3.247411 TCACTTGTTCGTCGTAACTCGTA 59.753 43.478 0.00 0.00 40.80 3.43
3698 4376 3.968096 CACTTGTTCGTCGTAACTCGTAA 59.032 43.478 0.00 0.00 40.80 3.18
3699 4377 4.086245 CACTTGTTCGTCGTAACTCGTAAG 59.914 45.833 0.00 0.00 40.80 2.34
3719 4397 7.159372 CGTAAGAATATACTATTGGGCTGGTT 58.841 38.462 0.00 0.00 43.02 3.67
3730 4408 2.853430 TGGGCTGGTTATTCTCCCTTA 58.147 47.619 0.00 0.00 37.83 2.69
3741 4419 1.271856 TCTCCCTTACGTGCCAATCA 58.728 50.000 0.00 0.00 0.00 2.57
3756 4434 6.121590 GTGCCAATCAAATTTATTTCCCCAT 58.878 36.000 0.00 0.00 0.00 4.00
3773 4451 4.600983 TCCCCATTGATTTTGGTTTTGGAT 59.399 37.500 0.00 0.00 31.99 3.41
3859 4537 4.617959 CCAGAGCTTATTGGCATTTGATG 58.382 43.478 0.00 0.00 34.17 3.07
3905 4586 2.267188 CCACTTGGCATCAAATGACG 57.733 50.000 0.00 0.00 42.80 4.35
3983 4664 5.451103 GCATCTAAGTGCAGTCATAGTCAGA 60.451 44.000 0.00 0.00 44.43 3.27
4110 4797 5.556194 CGAAATTTTTGTTCGGCAGAAAAGG 60.556 40.000 0.00 0.00 43.19 3.11
4125 4812 1.656587 AAAGGGAAGGGGGCAAAATC 58.343 50.000 0.00 0.00 0.00 2.17
4126 4813 0.614697 AAGGGAAGGGGGCAAAATCG 60.615 55.000 0.00 0.00 0.00 3.34
4139 4826 4.321675 GGGCAAAATCGGTCAAATACAACT 60.322 41.667 0.00 0.00 0.00 3.16
4165 4852 3.558418 GCCAACTCTCTAGAGACGAGTAG 59.442 52.174 18.76 10.29 44.74 2.57
4201 4888 5.181245 ACAGTACCCAAAAGAATTGACATCG 59.819 40.000 0.00 0.00 0.00 3.84
4211 4898 7.972832 AAAGAATTGACATCGGTAGTACAAA 57.027 32.000 2.06 0.00 0.00 2.83
4280 4968 8.141909 GGTAGGCATATAACCTTTTTCCAAATC 58.858 37.037 3.20 0.00 38.81 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.435970 TAGGACGAGGCCGGCTCA 62.436 66.667 28.56 2.68 44.92 4.26
14 15 3.597728 CTAGGACGAGGCCGGCTC 61.598 72.222 28.56 19.97 44.92 4.70
15 16 4.444081 ACTAGGACGAGGCCGGCT 62.444 66.667 28.56 12.77 44.92 5.52
16 17 3.902086 GACTAGGACGAGGCCGGC 61.902 72.222 21.18 21.18 44.80 6.13
17 18 2.439701 TGACTAGGACGAGGCCGG 60.440 66.667 0.00 0.00 40.78 6.13
18 19 3.111939 CTGACTAGGACGAGGCCG 58.888 66.667 0.00 0.00 42.50 6.13
19 20 2.809010 GCTGACTAGGACGAGGCC 59.191 66.667 0.00 0.00 0.00 5.19
20 21 2.409651 CGCTGACTAGGACGAGGC 59.590 66.667 0.00 0.00 0.00 4.70
21 22 2.409651 GCGCTGACTAGGACGAGG 59.590 66.667 0.00 0.00 0.00 4.63
22 23 1.426816 TACGCGCTGACTAGGACGAG 61.427 60.000 5.73 0.00 0.00 4.18
23 24 1.426816 CTACGCGCTGACTAGGACGA 61.427 60.000 5.73 0.00 0.00 4.20
24 25 1.011019 CTACGCGCTGACTAGGACG 60.011 63.158 5.73 0.00 0.00 4.79
25 26 0.027848 GACTACGCGCTGACTAGGAC 59.972 60.000 5.73 0.00 0.00 3.85
26 27 0.392060 TGACTACGCGCTGACTAGGA 60.392 55.000 5.73 0.00 0.00 2.94
27 28 0.028242 CTGACTACGCGCTGACTAGG 59.972 60.000 5.73 0.00 0.00 3.02
28 29 0.590230 GCTGACTACGCGCTGACTAG 60.590 60.000 5.73 1.98 0.00 2.57
29 30 1.428219 GCTGACTACGCGCTGACTA 59.572 57.895 5.73 0.00 0.00 2.59
30 31 2.179517 GCTGACTACGCGCTGACT 59.820 61.111 5.73 0.00 0.00 3.41
31 32 3.241059 CGCTGACTACGCGCTGAC 61.241 66.667 5.73 0.00 44.33 3.51
89 90 0.034863 TAAACTGATCGGTTGGGCCC 60.035 55.000 20.51 17.59 0.00 5.80
90 91 1.947456 GATAAACTGATCGGTTGGGCC 59.053 52.381 20.51 0.00 0.00 5.80
91 92 2.919228 AGATAAACTGATCGGTTGGGC 58.081 47.619 20.51 12.06 0.00 5.36
108 109 8.997621 AGTGTGTTTTATACGTATTGACAGAT 57.002 30.769 14.33 3.28 0.00 2.90
109 110 8.821147 AAGTGTGTTTTATACGTATTGACAGA 57.179 30.769 14.33 11.42 0.00 3.41
110 111 9.872757 AAAAGTGTGTTTTATACGTATTGACAG 57.127 29.630 14.33 0.00 0.00 3.51
142 143 2.026879 GGCGAGCCGTTGCAAAAA 59.973 55.556 0.00 0.00 41.13 1.94
143 144 3.972276 GGGCGAGCCGTTGCAAAA 61.972 61.111 0.00 0.00 41.13 2.44
152 153 4.918201 CCAAGATCGGGGCGAGCC 62.918 72.222 5.37 5.37 43.62 4.70
153 154 2.792947 TACCAAGATCGGGGCGAGC 61.793 63.158 10.65 0.00 42.87 5.03
154 155 1.067582 GTACCAAGATCGGGGCGAG 59.932 63.158 10.65 0.00 39.91 5.03
155 156 1.380785 AGTACCAAGATCGGGGCGA 60.381 57.895 10.65 0.00 41.13 5.54
156 157 1.227263 CAGTACCAAGATCGGGGCG 60.227 63.158 10.65 0.00 0.00 6.13
157 158 0.179081 GTCAGTACCAAGATCGGGGC 60.179 60.000 10.65 4.02 0.00 5.80
158 159 1.134788 GTGTCAGTACCAAGATCGGGG 60.135 57.143 10.65 7.64 0.00 5.73
159 160 1.469251 CGTGTCAGTACCAAGATCGGG 60.469 57.143 5.06 5.06 0.00 5.14
160 161 1.201647 ACGTGTCAGTACCAAGATCGG 59.798 52.381 0.00 0.00 0.00 4.18
161 162 2.631418 ACGTGTCAGTACCAAGATCG 57.369 50.000 0.00 0.00 0.00 3.69
162 163 6.774354 TTTTTACGTGTCAGTACCAAGATC 57.226 37.500 0.00 0.00 0.00 2.75
163 164 9.095065 GATATTTTTACGTGTCAGTACCAAGAT 57.905 33.333 0.00 0.00 0.00 2.40
164 165 8.089597 TGATATTTTTACGTGTCAGTACCAAGA 58.910 33.333 0.00 0.00 0.00 3.02
165 166 8.246908 TGATATTTTTACGTGTCAGTACCAAG 57.753 34.615 0.00 0.00 0.00 3.61
166 167 8.604640 TTGATATTTTTACGTGTCAGTACCAA 57.395 30.769 0.00 0.00 0.00 3.67
167 168 8.780846 ATTGATATTTTTACGTGTCAGTACCA 57.219 30.769 0.00 0.00 0.00 3.25
168 169 9.095065 AGATTGATATTTTTACGTGTCAGTACC 57.905 33.333 0.00 0.00 0.00 3.34
171 172 8.450964 CCAAGATTGATATTTTTACGTGTCAGT 58.549 33.333 0.00 0.00 0.00 3.41
172 173 8.450964 ACCAAGATTGATATTTTTACGTGTCAG 58.549 33.333 0.00 0.00 0.00 3.51
173 174 8.330466 ACCAAGATTGATATTTTTACGTGTCA 57.670 30.769 0.00 0.00 0.00 3.58
174 175 9.698617 GTACCAAGATTGATATTTTTACGTGTC 57.301 33.333 0.00 0.00 0.00 3.67
175 176 9.221933 TGTACCAAGATTGATATTTTTACGTGT 57.778 29.630 0.00 0.00 0.00 4.49
182 183 9.807649 GCAGATTTGTACCAAGATTGATATTTT 57.192 29.630 0.00 0.00 0.00 1.82
183 184 9.193806 AGCAGATTTGTACCAAGATTGATATTT 57.806 29.630 0.00 0.00 0.00 1.40
184 185 8.757982 AGCAGATTTGTACCAAGATTGATATT 57.242 30.769 0.00 0.00 0.00 1.28
185 186 8.757982 AAGCAGATTTGTACCAAGATTGATAT 57.242 30.769 0.00 0.00 0.00 1.63
186 187 7.283127 GGAAGCAGATTTGTACCAAGATTGATA 59.717 37.037 0.00 0.00 0.00 2.15
187 188 6.096001 GGAAGCAGATTTGTACCAAGATTGAT 59.904 38.462 0.00 0.00 0.00 2.57
188 189 5.415701 GGAAGCAGATTTGTACCAAGATTGA 59.584 40.000 0.00 0.00 0.00 2.57
189 190 5.183713 TGGAAGCAGATTTGTACCAAGATTG 59.816 40.000 0.00 0.00 0.00 2.67
190 191 5.324409 TGGAAGCAGATTTGTACCAAGATT 58.676 37.500 0.00 0.00 0.00 2.40
191 192 4.922206 TGGAAGCAGATTTGTACCAAGAT 58.078 39.130 0.00 0.00 0.00 2.40
192 193 4.365514 TGGAAGCAGATTTGTACCAAGA 57.634 40.909 0.00 0.00 0.00 3.02
193 194 5.404946 CATTGGAAGCAGATTTGTACCAAG 58.595 41.667 0.00 0.00 36.84 3.61
194 195 4.321899 GCATTGGAAGCAGATTTGTACCAA 60.322 41.667 0.00 0.00 37.32 3.67
195 196 3.193267 GCATTGGAAGCAGATTTGTACCA 59.807 43.478 0.00 0.00 0.00 3.25
196 197 3.429410 GGCATTGGAAGCAGATTTGTACC 60.429 47.826 0.00 0.00 0.00 3.34
197 198 3.429410 GGGCATTGGAAGCAGATTTGTAC 60.429 47.826 0.00 0.00 0.00 2.90
198 199 2.760092 GGGCATTGGAAGCAGATTTGTA 59.240 45.455 0.00 0.00 0.00 2.41
199 200 1.551883 GGGCATTGGAAGCAGATTTGT 59.448 47.619 0.00 0.00 0.00 2.83
200 201 1.551430 TGGGCATTGGAAGCAGATTTG 59.449 47.619 0.00 0.00 0.00 2.32
201 202 1.941377 TGGGCATTGGAAGCAGATTT 58.059 45.000 0.00 0.00 0.00 2.17
202 203 1.941377 TTGGGCATTGGAAGCAGATT 58.059 45.000 0.00 0.00 0.00 2.40
203 204 2.169769 CAATTGGGCATTGGAAGCAGAT 59.830 45.455 0.00 0.00 39.01 2.90
204 205 1.551430 CAATTGGGCATTGGAAGCAGA 59.449 47.619 0.00 0.00 39.01 4.26
205 206 1.276989 ACAATTGGGCATTGGAAGCAG 59.723 47.619 10.83 0.00 46.06 4.24
206 207 1.002201 CACAATTGGGCATTGGAAGCA 59.998 47.619 10.83 0.00 46.06 3.91
207 208 1.676615 CCACAATTGGGCATTGGAAGC 60.677 52.381 10.83 0.00 46.06 3.86
208 209 2.389962 CCACAATTGGGCATTGGAAG 57.610 50.000 10.83 0.00 46.06 3.46
219 220 4.566545 TTGCACAGAAGTACCACAATTG 57.433 40.909 3.24 3.24 0.00 2.32
220 221 5.789643 AATTGCACAGAAGTACCACAATT 57.210 34.783 0.00 0.00 32.89 2.32
221 222 5.789643 AAATTGCACAGAAGTACCACAAT 57.210 34.783 0.00 0.00 0.00 2.71
222 223 5.825679 AGTAAATTGCACAGAAGTACCACAA 59.174 36.000 0.00 0.00 0.00 3.33
223 224 5.373222 AGTAAATTGCACAGAAGTACCACA 58.627 37.500 0.00 0.00 0.00 4.17
224 225 5.468746 TGAGTAAATTGCACAGAAGTACCAC 59.531 40.000 0.00 0.00 0.00 4.16
225 226 5.616270 TGAGTAAATTGCACAGAAGTACCA 58.384 37.500 0.00 0.00 0.00 3.25
226 227 6.017440 TGTTGAGTAAATTGCACAGAAGTACC 60.017 38.462 0.00 0.00 0.00 3.34
227 228 6.954944 TGTTGAGTAAATTGCACAGAAGTAC 58.045 36.000 0.00 0.00 0.00 2.73
228 229 7.308529 CCATGTTGAGTAAATTGCACAGAAGTA 60.309 37.037 0.00 0.00 0.00 2.24
229 230 6.441274 CATGTTGAGTAAATTGCACAGAAGT 58.559 36.000 0.00 0.00 0.00 3.01
230 231 5.860182 CCATGTTGAGTAAATTGCACAGAAG 59.140 40.000 0.00 0.00 0.00 2.85
231 232 5.534278 TCCATGTTGAGTAAATTGCACAGAA 59.466 36.000 0.00 0.00 0.00 3.02
232 233 5.069318 TCCATGTTGAGTAAATTGCACAGA 58.931 37.500 0.00 0.00 0.00 3.41
233 234 5.375417 TCCATGTTGAGTAAATTGCACAG 57.625 39.130 0.00 0.00 0.00 3.66
234 235 4.321156 GCTCCATGTTGAGTAAATTGCACA 60.321 41.667 0.00 0.00 34.74 4.57
235 236 4.168760 GCTCCATGTTGAGTAAATTGCAC 58.831 43.478 0.00 0.00 34.74 4.57
236 237 3.193267 GGCTCCATGTTGAGTAAATTGCA 59.807 43.478 0.00 0.00 34.74 4.08
237 238 3.731867 CGGCTCCATGTTGAGTAAATTGC 60.732 47.826 0.00 0.00 34.74 3.56
238 239 3.731867 GCGGCTCCATGTTGAGTAAATTG 60.732 47.826 0.00 0.00 34.74 2.32
239 240 2.423538 GCGGCTCCATGTTGAGTAAATT 59.576 45.455 0.00 0.00 34.74 1.82
240 241 2.017049 GCGGCTCCATGTTGAGTAAAT 58.983 47.619 0.00 0.00 34.74 1.40
241 242 1.271108 TGCGGCTCCATGTTGAGTAAA 60.271 47.619 0.00 0.00 34.74 2.01
242 243 0.323302 TGCGGCTCCATGTTGAGTAA 59.677 50.000 0.00 0.00 34.74 2.24
243 244 0.108186 CTGCGGCTCCATGTTGAGTA 60.108 55.000 0.00 0.00 34.74 2.59
244 245 1.376424 CTGCGGCTCCATGTTGAGT 60.376 57.895 0.00 0.00 34.74 3.41
245 246 1.364626 GACTGCGGCTCCATGTTGAG 61.365 60.000 0.00 0.00 35.40 3.02
246 247 1.375908 GACTGCGGCTCCATGTTGA 60.376 57.895 0.00 0.00 0.00 3.18
247 248 2.743752 CGACTGCGGCTCCATGTTG 61.744 63.158 0.00 0.00 0.00 3.33
248 249 2.434884 CGACTGCGGCTCCATGTT 60.435 61.111 0.00 0.00 0.00 2.71
249 250 3.381983 TCGACTGCGGCTCCATGT 61.382 61.111 0.00 0.00 38.28 3.21
250 251 2.887568 GTCGACTGCGGCTCCATG 60.888 66.667 8.70 0.00 39.48 3.66
251 252 4.498520 CGTCGACTGCGGCTCCAT 62.499 66.667 14.70 0.00 40.67 3.41
260 261 2.179517 GACAGGAGGCGTCGACTG 59.820 66.667 4.62 11.58 37.01 3.51
276 277 1.984570 CCCCTTCTCTCGCTGTGGA 60.985 63.158 0.00 0.00 0.00 4.02
278 279 1.323271 TAGCCCCTTCTCTCGCTGTG 61.323 60.000 0.00 0.00 32.76 3.66
280 281 0.537188 TTTAGCCCCTTCTCTCGCTG 59.463 55.000 0.00 0.00 32.76 5.18
281 282 0.537653 GTTTAGCCCCTTCTCTCGCT 59.462 55.000 0.00 0.00 35.34 4.93
283 284 3.762674 GGTTTAGCCCCTTCTCTCG 57.237 57.895 0.00 0.00 0.00 4.04
293 294 1.745489 CTCAGCCACGGGTTTAGCC 60.745 63.158 0.00 0.00 0.00 3.93
332 335 1.694150 CACTCTCCTCCACCTTCAACA 59.306 52.381 0.00 0.00 0.00 3.33
337 340 0.104934 ACACCACTCTCCTCCACCTT 60.105 55.000 0.00 0.00 0.00 3.50
375 378 3.302347 CTCAGTCCCTCACCCACGC 62.302 68.421 0.00 0.00 0.00 5.34
377 380 2.294078 CCCTCAGTCCCTCACCCAC 61.294 68.421 0.00 0.00 0.00 4.61
382 385 1.704082 CCTACCCCTCAGTCCCTCA 59.296 63.158 0.00 0.00 0.00 3.86
383 386 1.762858 GCCTACCCCTCAGTCCCTC 60.763 68.421 0.00 0.00 0.00 4.30
384 387 2.369001 GCCTACCCCTCAGTCCCT 59.631 66.667 0.00 0.00 0.00 4.20
385 388 3.155167 CGCCTACCCCTCAGTCCC 61.155 72.222 0.00 0.00 0.00 4.46
386 389 2.948801 ATCCGCCTACCCCTCAGTCC 62.949 65.000 0.00 0.00 0.00 3.85
387 390 1.457831 ATCCGCCTACCCCTCAGTC 60.458 63.158 0.00 0.00 0.00 3.51
388 391 1.457831 GATCCGCCTACCCCTCAGT 60.458 63.158 0.00 0.00 0.00 3.41
389 392 2.565645 CGATCCGCCTACCCCTCAG 61.566 68.421 0.00 0.00 0.00 3.35
446 449 3.285215 GATGCATCCCGCTGCCTG 61.285 66.667 16.23 0.00 41.58 4.85
464 467 0.178068 AACTAATCGCCCGAGCACAT 59.822 50.000 0.00 0.00 39.83 3.21
494 497 2.202703 ACCCTAATCACGCGACGC 60.203 61.111 15.93 10.49 0.00 5.19
499 502 1.498865 CCGCATCACCCTAATCACGC 61.499 60.000 0.00 0.00 0.00 5.34
510 513 1.024579 AATTCCACGACCCGCATCAC 61.025 55.000 0.00 0.00 0.00 3.06
513 516 0.250793 TGTAATTCCACGACCCGCAT 59.749 50.000 0.00 0.00 0.00 4.73
518 521 6.017357 GGAGGAAAATATGTAATTCCACGACC 60.017 42.308 6.55 0.00 44.08 4.79
522 525 5.560183 CGCGGAGGAAAATATGTAATTCCAC 60.560 44.000 0.00 0.29 44.08 4.02
530 533 1.663695 CACCGCGGAGGAAAATATGT 58.336 50.000 35.90 0.00 45.00 2.29
543 546 3.678717 CTGACCGTACTCCACCGCG 62.679 68.421 0.00 0.00 0.00 6.46
545 548 1.167851 TAACTGACCGTACTCCACCG 58.832 55.000 0.00 0.00 0.00 4.94
580 583 6.839124 AACTTGATCCATTTTCTATGTGCA 57.161 33.333 0.00 0.00 0.00 4.57
586 897 6.489603 TGGCCTTAACTTGATCCATTTTCTA 58.510 36.000 3.32 0.00 0.00 2.10
594 905 1.393603 GGCTGGCCTTAACTTGATCC 58.606 55.000 3.32 0.00 0.00 3.36
647 958 2.340809 CGTACGACCCAGCCAACA 59.659 61.111 10.44 0.00 0.00 3.33
662 973 0.111639 AATTAGCCCCACAACACCGT 59.888 50.000 0.00 0.00 0.00 4.83
663 974 1.741145 GTAATTAGCCCCACAACACCG 59.259 52.381 0.00 0.00 0.00 4.94
684 995 1.534163 GAACTTTCTTACGTGCACCCC 59.466 52.381 12.15 0.00 0.00 4.95
687 998 4.531659 ACAAGAACTTTCTTACGTGCAC 57.468 40.909 6.82 6.82 45.23 4.57
692 1003 8.907685 TCAAACAAAAACAAGAACTTTCTTACG 58.092 29.630 3.91 0.00 45.23 3.18
701 1012 9.824534 ATCAAACAATCAAACAAAAACAAGAAC 57.175 25.926 0.00 0.00 0.00 3.01
717 1028 9.601217 AGTAATCACCACTACTATCAAACAATC 57.399 33.333 0.00 0.00 0.00 2.67
725 1036 5.793030 AGCCAGTAATCACCACTACTATC 57.207 43.478 0.00 0.00 0.00 2.08
729 1040 4.058817 GCATAGCCAGTAATCACCACTAC 58.941 47.826 0.00 0.00 0.00 2.73
730 1041 3.709141 TGCATAGCCAGTAATCACCACTA 59.291 43.478 0.00 0.00 0.00 2.74
731 1042 2.505407 TGCATAGCCAGTAATCACCACT 59.495 45.455 0.00 0.00 0.00 4.00
732 1043 2.917933 TGCATAGCCAGTAATCACCAC 58.082 47.619 0.00 0.00 0.00 4.16
733 1044 3.392285 AGATGCATAGCCAGTAATCACCA 59.608 43.478 0.00 0.00 0.00 4.17
734 1045 4.013267 AGATGCATAGCCAGTAATCACC 57.987 45.455 0.00 0.00 0.00 4.02
735 1046 7.496529 TTTTAGATGCATAGCCAGTAATCAC 57.503 36.000 0.00 0.00 0.00 3.06
813 1132 5.468746 AGAGCAACAACAGCGAGTTTTATTA 59.531 36.000 0.00 0.00 38.74 0.98
850 1169 4.099170 CGCAAGGAGCAGCAGCAC 62.099 66.667 3.17 0.00 46.13 4.40
1016 1335 0.896923 ATACGGCCCGAACTTGTACA 59.103 50.000 11.71 0.00 0.00 2.90
1119 1441 3.857038 GGGGCGAATAGGGCGTCA 61.857 66.667 0.00 0.00 34.56 4.35
1128 1450 1.682344 GCAAGGGAAAGGGGCGAAT 60.682 57.895 0.00 0.00 0.00 3.34
1149 1471 1.068541 GCAAACAAAACCCTAGAGGCG 60.069 52.381 0.00 0.00 40.58 5.52
1384 1718 8.110271 TGGGATCTAATCTATCTAACACGATCT 58.890 37.037 0.00 0.00 0.00 2.75
1566 2089 4.082463 GCTTGACTGCAGAGTACTTAGTCT 60.082 45.833 23.35 0.00 38.00 3.24
1669 2192 1.427809 TGCAGGATCCGGAGATTGAT 58.572 50.000 16.86 0.00 30.90 2.57
1767 2404 7.493320 CGAATGTGATTGAATGGAATGGATTTT 59.507 33.333 0.00 0.00 0.00 1.82
1792 2429 6.535150 ACATGGTGATTTGTACATAAGAGTCG 59.465 38.462 0.00 0.00 0.00 4.18
1966 2603 7.873505 ACTCTCATAACTCTAAACCACAGAAAC 59.126 37.037 0.00 0.00 0.00 2.78
1973 2610 7.476540 TTAGCACTCTCATAACTCTAAACCA 57.523 36.000 0.00 0.00 0.00 3.67
1975 2612 9.243637 CTCATTAGCACTCTCATAACTCTAAAC 57.756 37.037 0.00 0.00 0.00 2.01
2261 2898 8.739039 TGAAGAATTAATGACGGATGTTTCAAT 58.261 29.630 0.00 0.00 0.00 2.57
2344 2994 2.154462 ACTGCTGCATACAACTCAACC 58.846 47.619 1.31 0.00 0.00 3.77
2347 2997 4.271696 ACTAACTGCTGCATACAACTCA 57.728 40.909 1.31 0.00 0.00 3.41
2387 3037 8.613060 ACCAAAGAAGTGCATATATCAGTATG 57.387 34.615 0.00 0.00 35.61 2.39
2454 3104 0.322816 GAACAGCTGAATGGCAGGGA 60.323 55.000 23.35 0.00 45.03 4.20
2455 3105 0.609957 TGAACAGCTGAATGGCAGGG 60.610 55.000 23.35 0.00 45.03 4.45
2555 3205 9.290988 ACATGTGTGTATTGTCAAGGTAAAATA 57.709 29.630 0.00 0.00 36.63 1.40
2602 3252 3.411446 AGATCAGCAAATCGTTTCACCA 58.589 40.909 0.00 0.00 0.00 4.17
2744 3394 2.988010 TTGGACGCTGAGCTATTCAT 57.012 45.000 1.78 0.00 34.68 2.57
2779 3429 2.600790 TGTGAACGGAGGGAGTAGAAA 58.399 47.619 0.00 0.00 0.00 2.52
2803 3453 1.558294 GTATTTTGGGACGGAGGGAGT 59.442 52.381 0.00 0.00 0.00 3.85
2804 3454 1.838077 AGTATTTTGGGACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
2805 3455 1.961133 AGTATTTTGGGACGGAGGGA 58.039 50.000 0.00 0.00 0.00 4.20
2806 3456 2.290705 ACAAGTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2807 3457 3.007635 GACAAGTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2808 3458 2.671396 CGACAAGTATTTTGGGACGGAG 59.329 50.000 0.00 0.00 0.00 4.63
2809 3459 2.613474 CCGACAAGTATTTTGGGACGGA 60.613 50.000 0.00 0.00 37.12 4.69
2810 3460 1.735571 CCGACAAGTATTTTGGGACGG 59.264 52.381 0.00 0.00 0.00 4.79
2811 3461 2.671396 CTCCGACAAGTATTTTGGGACG 59.329 50.000 0.00 0.00 0.00 4.79
2812 3462 3.934068 TCTCCGACAAGTATTTTGGGAC 58.066 45.455 0.00 0.00 0.00 4.46
2813 3463 4.627284 TTCTCCGACAAGTATTTTGGGA 57.373 40.909 0.00 0.00 0.00 4.37
2814 3464 5.393027 CCATTTCTCCGACAAGTATTTTGGG 60.393 44.000 0.00 0.00 0.00 4.12
2815 3465 5.414454 TCCATTTCTCCGACAAGTATTTTGG 59.586 40.000 0.00 0.00 0.00 3.28
2816 3466 6.494893 TCCATTTCTCCGACAAGTATTTTG 57.505 37.500 0.00 0.00 0.00 2.44
2817 3467 8.801882 TTATCCATTTCTCCGACAAGTATTTT 57.198 30.769 0.00 0.00 0.00 1.82
2818 3468 8.801882 TTTATCCATTTCTCCGACAAGTATTT 57.198 30.769 0.00 0.00 0.00 1.40
2819 3469 8.801882 TTTTATCCATTTCTCCGACAAGTATT 57.198 30.769 0.00 0.00 0.00 1.89
2820 3470 8.980481 ATTTTATCCATTTCTCCGACAAGTAT 57.020 30.769 0.00 0.00 0.00 2.12
2821 3471 8.673711 CAATTTTATCCATTTCTCCGACAAGTA 58.326 33.333 0.00 0.00 0.00 2.24
2822 3472 7.362920 CCAATTTTATCCATTTCTCCGACAAGT 60.363 37.037 0.00 0.00 0.00 3.16
2823 3473 6.974622 CCAATTTTATCCATTTCTCCGACAAG 59.025 38.462 0.00 0.00 0.00 3.16
2824 3474 6.661377 TCCAATTTTATCCATTTCTCCGACAA 59.339 34.615 0.00 0.00 0.00 3.18
2825 3475 6.184068 TCCAATTTTATCCATTTCTCCGACA 58.816 36.000 0.00 0.00 0.00 4.35
2826 3476 6.693315 TCCAATTTTATCCATTTCTCCGAC 57.307 37.500 0.00 0.00 0.00 4.79
2827 3477 6.833416 ACATCCAATTTTATCCATTTCTCCGA 59.167 34.615 0.00 0.00 0.00 4.55
2828 3478 7.042797 ACATCCAATTTTATCCATTTCTCCG 57.957 36.000 0.00 0.00 0.00 4.63
2858 3508 9.625747 TGCATGAATCTGGATGTATTTTAGTTA 57.374 29.630 0.00 0.00 0.00 2.24
2859 3509 8.523915 TGCATGAATCTGGATGTATTTTAGTT 57.476 30.769 0.00 0.00 0.00 2.24
2860 3510 8.701908 ATGCATGAATCTGGATGTATTTTAGT 57.298 30.769 0.00 0.00 0.00 2.24
2861 3511 9.976511 AAATGCATGAATCTGGATGTATTTTAG 57.023 29.630 0.00 0.00 40.06 1.85
2862 3512 9.970395 GAAATGCATGAATCTGGATGTATTTTA 57.030 29.630 0.00 0.00 41.82 1.52
2863 3513 8.701895 AGAAATGCATGAATCTGGATGTATTTT 58.298 29.630 0.00 0.00 41.82 1.82
2864 3514 8.246430 AGAAATGCATGAATCTGGATGTATTT 57.754 30.769 0.00 0.00 43.36 1.40
2865 3515 7.039923 GGAGAAATGCATGAATCTGGATGTATT 60.040 37.037 12.99 0.00 36.72 1.89
2866 3516 6.433404 GGAGAAATGCATGAATCTGGATGTAT 59.567 38.462 12.99 0.00 0.00 2.29
2867 3517 5.766670 GGAGAAATGCATGAATCTGGATGTA 59.233 40.000 12.99 0.00 0.00 2.29
2868 3518 4.583489 GGAGAAATGCATGAATCTGGATGT 59.417 41.667 12.99 0.00 0.00 3.06
2869 3519 4.320275 CGGAGAAATGCATGAATCTGGATG 60.320 45.833 12.99 0.00 0.00 3.51
2870 3520 3.819337 CGGAGAAATGCATGAATCTGGAT 59.181 43.478 12.99 0.00 0.00 3.41
2871 3521 3.118298 TCGGAGAAATGCATGAATCTGGA 60.118 43.478 12.99 8.38 0.00 3.86
2872 3522 3.003068 GTCGGAGAAATGCATGAATCTGG 59.997 47.826 12.99 6.66 39.69 3.86
2873 3523 3.624410 TGTCGGAGAAATGCATGAATCTG 59.376 43.478 12.99 10.15 39.69 2.90
2874 3524 3.877559 TGTCGGAGAAATGCATGAATCT 58.122 40.909 0.00 4.68 39.69 2.40
2875 3525 4.095483 ACTTGTCGGAGAAATGCATGAATC 59.905 41.667 0.00 0.00 39.69 2.52
2876 3526 4.012374 ACTTGTCGGAGAAATGCATGAAT 58.988 39.130 0.00 0.00 39.69 2.57
2877 3527 3.411446 ACTTGTCGGAGAAATGCATGAA 58.589 40.909 0.00 0.00 39.69 2.57
2878 3528 3.057969 ACTTGTCGGAGAAATGCATGA 57.942 42.857 0.00 0.00 39.69 3.07
2879 3529 5.490139 AATACTTGTCGGAGAAATGCATG 57.510 39.130 0.00 0.00 39.69 4.06
2880 3530 6.515272 AAAATACTTGTCGGAGAAATGCAT 57.485 33.333 0.00 0.00 39.69 3.96
2881 3531 5.390461 CGAAAATACTTGTCGGAGAAATGCA 60.390 40.000 0.00 0.00 39.69 3.96
2882 3532 5.022021 CGAAAATACTTGTCGGAGAAATGC 58.978 41.667 0.00 0.00 39.69 3.56
2891 3541 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
2892 3542 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2893 3543 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2894 3544 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2895 3545 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2896 3546 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2897 3547 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2898 3548 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2899 3549 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2900 3550 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
2901 3551 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
2902 3552 2.173356 TCTTATACTCCCTCCGTCCGAA 59.827 50.000 0.00 0.00 0.00 4.30
2903 3553 1.770658 TCTTATACTCCCTCCGTCCGA 59.229 52.381 0.00 0.00 0.00 4.55
2904 3554 2.267174 TCTTATACTCCCTCCGTCCG 57.733 55.000 0.00 0.00 0.00 4.79
2905 3555 3.498334 ACATCTTATACTCCCTCCGTCC 58.502 50.000 0.00 0.00 0.00 4.79
2906 3556 5.532664 AAACATCTTATACTCCCTCCGTC 57.467 43.478 0.00 0.00 0.00 4.79
2907 3557 5.671493 CAAAACATCTTATACTCCCTCCGT 58.329 41.667 0.00 0.00 0.00 4.69
2908 3558 4.511826 GCAAAACATCTTATACTCCCTCCG 59.488 45.833 0.00 0.00 0.00 4.63
2909 3559 4.822350 GGCAAAACATCTTATACTCCCTCC 59.178 45.833 0.00 0.00 0.00 4.30
2910 3560 5.437060 TGGCAAAACATCTTATACTCCCTC 58.563 41.667 0.00 0.00 0.00 4.30
2911 3561 5.044846 ACTGGCAAAACATCTTATACTCCCT 60.045 40.000 0.00 0.00 0.00 4.20
2912 3562 5.193679 ACTGGCAAAACATCTTATACTCCC 58.806 41.667 0.00 0.00 0.00 4.30
2913 3563 6.374333 TGAACTGGCAAAACATCTTATACTCC 59.626 38.462 0.00 0.00 0.00 3.85
2914 3564 7.377766 TGAACTGGCAAAACATCTTATACTC 57.622 36.000 0.00 0.00 0.00 2.59
2915 3565 7.759489 TTGAACTGGCAAAACATCTTATACT 57.241 32.000 0.00 0.00 0.00 2.12
2916 3566 8.986477 AATTGAACTGGCAAAACATCTTATAC 57.014 30.769 0.00 0.00 0.00 1.47
2917 3567 9.421806 CAAATTGAACTGGCAAAACATCTTATA 57.578 29.630 0.00 0.00 0.00 0.98
2981 3631 5.545063 AAGGTGAACCCCTTTAAATTGTG 57.455 39.130 0.00 0.00 42.24 3.33
3022 3672 7.575414 ACACATTCTATTTTGTTGTGTACCA 57.425 32.000 5.28 0.00 46.51 3.25
3086 3736 4.862371 AGGTGAACAAAGTAACCAAAGGA 58.138 39.130 0.00 0.00 35.01 3.36
3252 3904 9.044724 GCATCATATATTTCATCGTTTTTCTCG 57.955 33.333 0.00 0.00 0.00 4.04
3375 4027 4.210120 CCTTCTCTTTCACTTTCACGTCAG 59.790 45.833 0.00 0.00 0.00 3.51
3380 4032 7.264373 TCATTTCCTTCTCTTTCACTTTCAC 57.736 36.000 0.00 0.00 0.00 3.18
3381 4033 7.013655 CCTTCATTTCCTTCTCTTTCACTTTCA 59.986 37.037 0.00 0.00 0.00 2.69
3382 4034 7.229506 TCCTTCATTTCCTTCTCTTTCACTTTC 59.770 37.037 0.00 0.00 0.00 2.62
3383 4035 7.062957 TCCTTCATTTCCTTCTCTTTCACTTT 58.937 34.615 0.00 0.00 0.00 2.66
3384 4036 6.605119 TCCTTCATTTCCTTCTCTTTCACTT 58.395 36.000 0.00 0.00 0.00 3.16
3385 4037 6.043706 TCTCCTTCATTTCCTTCTCTTTCACT 59.956 38.462 0.00 0.00 0.00 3.41
3421 4073 7.099764 TGCTTCTATCTTTTCTTTCGACATCT 58.900 34.615 0.00 0.00 0.00 2.90
3424 4076 6.092670 CCATGCTTCTATCTTTTCTTTCGACA 59.907 38.462 0.00 0.00 0.00 4.35
3480 4132 4.527509 AGAGTTCATCAGAAAAGAGCGA 57.472 40.909 0.00 0.00 35.08 4.93
3493 4145 6.096001 GGCAGTGGATGAAAATTAGAGTTCAT 59.904 38.462 3.31 3.31 45.03 2.57
3495 4147 5.415701 TGGCAGTGGATGAAAATTAGAGTTC 59.584 40.000 0.00 0.00 0.00 3.01
3496 4148 5.183904 GTGGCAGTGGATGAAAATTAGAGTT 59.816 40.000 0.00 0.00 0.00 3.01
3497 4149 4.702131 GTGGCAGTGGATGAAAATTAGAGT 59.298 41.667 0.00 0.00 0.00 3.24
3625 4303 6.308041 GTGCGATATATTCTTACGATGAAGCA 59.692 38.462 0.00 0.00 0.00 3.91
3631 4309 7.762382 TCAGATGTGCGATATATTCTTACGAT 58.238 34.615 0.00 0.00 0.00 3.73
3692 4370 7.036220 CCAGCCCAATAGTATATTCTTACGAG 58.964 42.308 0.00 0.00 0.00 4.18
3693 4371 6.495872 ACCAGCCCAATAGTATATTCTTACGA 59.504 38.462 0.00 0.00 0.00 3.43
3694 4372 6.698380 ACCAGCCCAATAGTATATTCTTACG 58.302 40.000 0.00 0.00 0.00 3.18
3697 4375 9.740710 GAATAACCAGCCCAATAGTATATTCTT 57.259 33.333 0.00 0.00 0.00 2.52
3698 4376 9.117223 AGAATAACCAGCCCAATAGTATATTCT 57.883 33.333 0.00 0.00 34.46 2.40
3699 4377 9.384764 GAGAATAACCAGCCCAATAGTATATTC 57.615 37.037 0.00 0.00 0.00 1.75
3700 4378 8.329502 GGAGAATAACCAGCCCAATAGTATATT 58.670 37.037 0.00 0.00 0.00 1.28
3701 4379 7.092399 GGGAGAATAACCAGCCCAATAGTATAT 60.092 40.741 0.00 0.00 38.68 0.86
3702 4380 6.214819 GGGAGAATAACCAGCCCAATAGTATA 59.785 42.308 0.00 0.00 38.68 1.47
3703 4381 5.014228 GGGAGAATAACCAGCCCAATAGTAT 59.986 44.000 0.00 0.00 38.68 2.12
3704 4382 4.349930 GGGAGAATAACCAGCCCAATAGTA 59.650 45.833 0.00 0.00 38.68 1.82
3705 4383 3.138468 GGGAGAATAACCAGCCCAATAGT 59.862 47.826 0.00 0.00 38.68 2.12
3706 4384 3.395941 AGGGAGAATAACCAGCCCAATAG 59.604 47.826 0.00 0.00 41.34 1.73
3710 4388 1.681229 AAGGGAGAATAACCAGCCCA 58.319 50.000 0.00 0.00 41.34 5.36
3712 4390 2.169978 ACGTAAGGGAGAATAACCAGCC 59.830 50.000 0.00 0.00 46.39 4.85
3713 4391 3.538634 ACGTAAGGGAGAATAACCAGC 57.461 47.619 0.00 0.00 46.39 4.85
3730 4408 5.175127 GGGAAATAAATTTGATTGGCACGT 58.825 37.500 0.00 0.00 0.00 4.49
3741 4419 9.599056 AACCAAAATCAATGGGGAAATAAATTT 57.401 25.926 0.00 0.00 42.48 1.82
3847 4525 3.198200 CCAAATCTCCCATCAAATGCCAA 59.802 43.478 0.00 0.00 0.00 4.52
3859 4537 2.549754 CGACATATGCACCAAATCTCCC 59.450 50.000 1.58 0.00 0.00 4.30
3902 4583 1.715585 CAATCGTGCATGGTCCGTC 59.284 57.895 5.98 0.00 0.00 4.79
3903 4584 3.889227 CAATCGTGCATGGTCCGT 58.111 55.556 5.98 0.00 0.00 4.69
3999 4680 2.280797 TGACTCTTGCACGCACCC 60.281 61.111 0.00 0.00 0.00 4.61
4103 4790 0.565674 TTTGCCCCCTTCCCTTTTCT 59.434 50.000 0.00 0.00 0.00 2.52
4104 4791 1.429930 TTTTGCCCCCTTCCCTTTTC 58.570 50.000 0.00 0.00 0.00 2.29
4105 4792 1.985159 GATTTTGCCCCCTTCCCTTTT 59.015 47.619 0.00 0.00 0.00 2.27
4106 4793 1.656587 GATTTTGCCCCCTTCCCTTT 58.343 50.000 0.00 0.00 0.00 3.11
4107 4794 0.614697 CGATTTTGCCCCCTTCCCTT 60.615 55.000 0.00 0.00 0.00 3.95
4110 4797 1.304962 ACCGATTTTGCCCCCTTCC 60.305 57.895 0.00 0.00 0.00 3.46
4125 4812 1.135689 GGCAGCAGTTGTATTTGACCG 60.136 52.381 0.00 0.00 0.00 4.79
4126 4813 1.885887 TGGCAGCAGTTGTATTTGACC 59.114 47.619 0.00 0.00 0.00 4.02
4139 4826 1.821753 GTCTCTAGAGAGTTGGCAGCA 59.178 52.381 22.95 0.00 42.60 4.41
4165 4852 8.508875 TCTTTTGGGTACTGTCGAAATAATTTC 58.491 33.333 0.00 0.00 36.32 2.17
4211 4898 6.507023 AGCTCACGATTTGTTTTTCATTTCT 58.493 32.000 0.00 0.00 0.00 2.52
4280 4968 7.445900 TCGACATGCTATTACTTTTACTTCG 57.554 36.000 0.00 0.00 0.00 3.79
4345 5044 1.734137 CACCTAGGGACACCGATCG 59.266 63.158 14.81 8.51 43.47 3.69
4414 5113 3.706373 GTCTGCGCCTTCTCCCCA 61.706 66.667 4.18 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.