Multiple sequence alignment - TraesCS4B01G123000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4B01G123000
chr4B
100.000
2666
0
0
1
2666
146494503
146491838
0.000000e+00
4924
1
TraesCS4B01G123000
chr4B
77.079
493
83
20
2027
2490
272070803
272070312
9.470000e-65
257
2
TraesCS4B01G123000
chr4B
78.961
385
69
8
2229
2607
25961113
25960735
4.410000e-63
252
3
TraesCS4B01G123000
chr4A
87.778
2021
145
50
2
1967
472921671
472923644
0.000000e+00
2270
4
TraesCS4B01G123000
chr4A
86.152
686
87
5
1982
2666
472931363
472932041
0.000000e+00
734
5
TraesCS4B01G123000
chr4D
87.399
1484
93
45
477
1905
102164233
102162789
0.000000e+00
1618
6
TraesCS4B01G123000
chr4D
87.802
787
72
12
1887
2666
102162109
102161340
0.000000e+00
900
7
TraesCS4B01G123000
chr7A
76.758
697
118
21
1935
2607
249586538
249585862
1.520000e-92
350
8
TraesCS4B01G123000
chr3D
77.677
551
96
14
1980
2508
475782349
475782894
7.170000e-81
311
9
TraesCS4B01G123000
chr3D
77.170
311
62
8
2181
2485
155720493
155720800
3.530000e-39
172
10
TraesCS4B01G123000
chr2A
79.303
459
82
12
2176
2626
320186832
320187285
2.580000e-80
309
11
TraesCS4B01G123000
chr7B
78.986
414
71
9
2176
2585
2956703
2956302
4.370000e-68
268
12
TraesCS4B01G123000
chr7B
79.412
306
49
12
2176
2478
478838252
478838546
1.250000e-48
204
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4B01G123000
chr4B
146491838
146494503
2665
True
4924
4924
100.0000
1
2666
1
chr4B.!!$R2
2665
1
TraesCS4B01G123000
chr4A
472921671
472923644
1973
False
2270
2270
87.7780
2
1967
1
chr4A.!!$F1
1965
2
TraesCS4B01G123000
chr4A
472931363
472932041
678
False
734
734
86.1520
1982
2666
1
chr4A.!!$F2
684
3
TraesCS4B01G123000
chr4D
102161340
102164233
2893
True
1259
1618
87.6005
477
2666
2
chr4D.!!$R1
2189
4
TraesCS4B01G123000
chr7A
249585862
249586538
676
True
350
350
76.7580
1935
2607
1
chr7A.!!$R1
672
5
TraesCS4B01G123000
chr3D
475782349
475782894
545
False
311
311
77.6770
1980
2508
1
chr3D.!!$F2
528
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
711
721
0.031585
CATTGATCCTGGCCGCATTG
59.968
55.0
0.0
0.0
0.0
2.82
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1756
1826
0.182537
TAGCTGCACACACCAAACCT
59.817
50.0
1.02
0.0
0.0
3.5
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
28
29
1.133790
GCCAGCTCATGACCAAATGTC
59.866
52.381
0.00
0.00
44.72
3.06
42
43
3.238497
TGTCTGTGGACACCCCGG
61.238
66.667
0.00
0.00
46.19
5.73
49
51
0.106149
GTGGACACCCCGGACATATC
59.894
60.000
0.73
0.00
37.93
1.63
63
65
3.433031
GGACATATCCGTGGACATTTGGA
60.433
47.826
0.00
0.00
34.48
3.53
81
83
2.025793
TGGAGTCTTGTTTGGTGAACCA
60.026
45.455
0.00
0.00
45.94
3.67
85
87
4.398319
AGTCTTGTTTGGTGAACCATAGG
58.602
43.478
2.34
0.00
46.97
2.57
87
89
5.010282
GTCTTGTTTGGTGAACCATAGGAT
58.990
41.667
2.34
0.00
46.97
3.24
100
102
6.906901
TGAACCATAGGATAAGTCTTAAGGGT
59.093
38.462
1.85
0.00
31.25
4.34
113
115
3.262405
TCTTAAGGGTAACTCCAACGCAT
59.738
43.478
1.85
0.00
38.11
4.73
125
127
1.791785
CCAACGCATGAACGCATTTTT
59.208
42.857
0.00
0.00
36.19
1.94
157
159
0.363512
CGCGTCGACAGAAATCACAG
59.636
55.000
17.16
0.00
0.00
3.66
166
168
1.546923
CAGAAATCACAGCCCAATGCA
59.453
47.619
0.00
0.00
44.83
3.96
168
170
0.244450
AAATCACAGCCCAATGCACG
59.756
50.000
0.00
0.00
44.83
5.34
177
179
1.408702
GCCCAATGCACGGACATAAAT
59.591
47.619
5.55
0.00
40.77
1.40
178
180
2.543653
GCCCAATGCACGGACATAAATC
60.544
50.000
5.55
0.00
40.77
2.17
179
181
2.951642
CCCAATGCACGGACATAAATCT
59.048
45.455
5.55
0.00
0.00
2.40
197
199
2.305928
TCTGTTTTGTGTCCATGTGGG
58.694
47.619
0.00
0.00
35.41
4.61
204
206
1.606025
TGTCCATGTGGGCGCAAAT
60.606
52.632
10.83
1.76
44.44
2.32
221
223
1.937191
AATCCGCCTCAAATTTGGGT
58.063
45.000
16.75
0.00
0.00
4.51
222
224
1.474330
ATCCGCCTCAAATTTGGGTC
58.526
50.000
16.75
2.86
0.00
4.46
236
238
1.379843
GGGTCGGGTTTGCATCCAT
60.380
57.895
10.02
0.00
0.00
3.41
244
246
2.687935
GGGTTTGCATCCATACGAACAT
59.312
45.455
10.02
0.00
32.72
2.71
249
251
3.457234
TGCATCCATACGAACATGAGAC
58.543
45.455
0.00
0.00
0.00
3.36
250
252
2.472861
GCATCCATACGAACATGAGACG
59.527
50.000
0.00
4.55
0.00
4.18
251
253
3.795488
GCATCCATACGAACATGAGACGA
60.795
47.826
0.00
0.00
0.00
4.20
252
254
3.416119
TCCATACGAACATGAGACGAC
57.584
47.619
0.00
0.00
0.00
4.34
254
256
2.109463
CATACGAACATGAGACGACCG
58.891
52.381
0.00
0.00
0.00
4.79
256
258
2.497092
CGAACATGAGACGACCGCG
61.497
63.158
0.00
0.00
44.79
6.46
299
301
3.741388
CGCCCTACAGTCCTTTTAGATGG
60.741
52.174
0.00
0.00
0.00
3.51
302
304
3.199946
CCTACAGTCCTTTTAGATGGGCA
59.800
47.826
0.00
0.00
0.00
5.36
303
305
3.356529
ACAGTCCTTTTAGATGGGCAG
57.643
47.619
0.00
0.00
0.00
4.85
305
307
1.566231
AGTCCTTTTAGATGGGCAGGG
59.434
52.381
0.00
0.00
0.00
4.45
307
309
0.756815
CCTTTTAGATGGGCAGGGGC
60.757
60.000
0.00
0.00
40.13
5.80
335
341
1.899438
GCCCACTCTTCTCCCTCTCTT
60.899
57.143
0.00
0.00
0.00
2.85
345
351
0.850883
TCCCTCTCTTTGCCCCCAAT
60.851
55.000
0.00
0.00
0.00
3.16
377
383
1.185315
CCCAACCCTAGCCATTGTTG
58.815
55.000
0.00
0.00
38.20
3.33
379
385
1.549203
CAACCCTAGCCATTGTTGCT
58.451
50.000
0.00
0.00
42.81
3.91
381
387
0.405585
ACCCTAGCCATTGTTGCTGT
59.594
50.000
0.00
0.00
39.91
4.40
382
388
1.203050
ACCCTAGCCATTGTTGCTGTT
60.203
47.619
0.00
0.00
39.91
3.16
385
391
3.955775
GCCATTGTTGCTGTTGGC
58.044
55.556
0.00
0.00
46.94
4.52
403
409
2.434359
CGGAGAGGGTTTCGGTGC
60.434
66.667
0.00
0.00
0.00
5.01
405
411
2.747686
GAGAGGGTTTCGGTGCCA
59.252
61.111
0.00
0.00
0.00
4.92
412
418
2.361104
TTTCGGTGCCAGCCATCC
60.361
61.111
0.00
0.00
0.00
3.51
449
455
1.534175
CGACGAGCTCAAGATACACCC
60.534
57.143
15.40
0.00
0.00
4.61
453
459
1.523938
GCTCAAGATACACCCCCGC
60.524
63.158
0.00
0.00
0.00
6.13
454
460
1.227263
CTCAAGATACACCCCCGCG
60.227
63.158
0.00
0.00
0.00
6.46
472
481
0.106918
CGGAGCTCTCCCTGTAGACT
60.107
60.000
14.64
0.00
46.96
3.24
503
512
1.432251
CGGCATAGGACGTCGACTT
59.568
57.895
14.70
3.52
41.88
3.01
506
515
0.179134
GCATAGGACGTCGACTTGCT
60.179
55.000
19.46
19.46
0.00
3.91
510
519
0.603569
AGGACGTCGACTTGCTGAAT
59.396
50.000
15.23
0.00
0.00
2.57
525
534
2.162681
CTGAATTGGGACACCTGGTTC
58.837
52.381
0.00
0.00
39.29
3.62
541
550
4.034258
TCGTGGACGAGCACGACC
62.034
66.667
16.99
16.99
46.91
4.79
586
595
1.372997
CGTGTGCGTGCTCCTAGTT
60.373
57.895
0.00
0.00
0.00
2.24
622
631
2.760385
GGGAGACCGGTGAGGAGG
60.760
72.222
14.63
0.00
45.00
4.30
707
717
3.599704
GGCATTGATCCTGGCCGC
61.600
66.667
0.00
0.00
36.58
6.53
708
718
2.829914
GCATTGATCCTGGCCGCA
60.830
61.111
0.00
0.00
0.00
5.69
709
719
2.198287
GCATTGATCCTGGCCGCAT
61.198
57.895
0.00
0.00
0.00
4.73
710
720
1.741327
GCATTGATCCTGGCCGCATT
61.741
55.000
0.00
0.00
0.00
3.56
711
721
0.031585
CATTGATCCTGGCCGCATTG
59.968
55.000
0.00
0.00
0.00
2.82
712
722
1.111116
ATTGATCCTGGCCGCATTGG
61.111
55.000
0.00
0.00
42.50
3.16
739
749
1.374252
GATGTCGTCGTGCCCAAGT
60.374
57.895
0.00
0.00
0.00
3.16
758
768
3.112709
GGAGCACGCGTTGGAGTC
61.113
66.667
10.22
1.38
0.00
3.36
815
830
5.486775
TGGATGATAATCAAAAGGCCCAAAA
59.513
36.000
0.00
0.00
0.00
2.44
843
868
1.536766
TGAGATTTGAAGCAGGCAACG
59.463
47.619
0.00
0.00
46.39
4.10
851
876
0.804989
AAGCAGGCAACGTATGAAGC
59.195
50.000
0.00
0.00
46.39
3.86
854
879
1.200020
GCAGGCAACGTATGAAGCTTT
59.800
47.619
0.00
0.00
46.39
3.51
1017
1069
0.555769
GCATGGGGTCCCCTAAATCA
59.444
55.000
28.11
6.69
45.70
2.57
1331
1383
2.050350
CCTCCTTCACCTACGCCGA
61.050
63.158
0.00
0.00
0.00
5.54
1669
1721
2.360475
GCACCAAGCTCTGACCCC
60.360
66.667
0.00
0.00
41.15
4.95
1670
1722
2.046892
CACCAAGCTCTGACCCCG
60.047
66.667
0.00
0.00
0.00
5.73
1671
1723
2.203788
ACCAAGCTCTGACCCCGA
60.204
61.111
0.00
0.00
0.00
5.14
1672
1724
1.613630
ACCAAGCTCTGACCCCGAT
60.614
57.895
0.00
0.00
0.00
4.18
1673
1725
1.153289
CCAAGCTCTGACCCCGATG
60.153
63.158
0.00
0.00
0.00
3.84
1674
1726
1.617018
CCAAGCTCTGACCCCGATGA
61.617
60.000
0.00
0.00
0.00
2.92
1675
1727
0.467384
CAAGCTCTGACCCCGATGAT
59.533
55.000
0.00
0.00
0.00
2.45
1676
1728
0.755686
AAGCTCTGACCCCGATGATC
59.244
55.000
0.00
0.00
0.00
2.92
1677
1729
1.006805
GCTCTGACCCCGATGATCG
60.007
63.158
8.05
8.05
40.07
3.69
1678
1730
1.456196
GCTCTGACCCCGATGATCGA
61.456
60.000
17.52
0.00
43.74
3.59
1771
1847
1.454847
GGGAGGTTTGGTGTGTGCA
60.455
57.895
0.00
0.00
0.00
4.57
1773
1849
1.360192
GAGGTTTGGTGTGTGCAGC
59.640
57.895
0.00
0.00
42.95
5.25
1785
1861
0.249114
TGTGCAGCTACACGTTCGAA
60.249
50.000
12.39
0.00
43.74
3.71
1786
1862
0.161024
GTGCAGCTACACGTTCGAAC
59.839
55.000
18.47
18.47
0.00
3.95
1795
1871
2.427905
CGTTCGAACGTCCGCTCA
60.428
61.111
35.92
0.00
46.63
4.26
1796
1872
2.704193
CGTTCGAACGTCCGCTCAC
61.704
63.158
35.92
4.53
46.63
3.51
1797
1873
2.049802
TTCGAACGTCCGCTCACC
60.050
61.111
0.00
0.00
0.00
4.02
1798
1874
3.884581
TTCGAACGTCCGCTCACCG
62.885
63.158
0.00
0.00
0.00
4.94
1861
1938
4.336532
AAATCGATGCGTTTGTTCTACC
57.663
40.909
0.00
0.00
0.00
3.18
1880
1957
1.138036
CGTACGTGCGAGATTGGGA
59.862
57.895
21.98
0.00
0.00
4.37
1890
1967
3.882888
TGCGAGATTGGGAATTTGTATCC
59.117
43.478
0.00
0.00
36.16
2.59
2027
2806
8.121305
AGCACATAGTTATTTCATGGTTTTGA
57.879
30.769
0.00
0.00
0.00
2.69
2036
2815
9.921637
GTTATTTCATGGTTTTGACTAATCCAA
57.078
29.630
3.96
0.00
38.70
3.53
2065
2844
4.620982
AGAAAAATCGGCTCAAAAACCTG
58.379
39.130
0.00
0.00
0.00
4.00
2089
2868
9.219603
CTGAACAAGTTGGTCTTATTTATGAGA
57.780
33.333
21.18
0.00
34.53
3.27
2124
2903
2.348411
ATCGGACAAATAGCAAGGGG
57.652
50.000
0.00
0.00
0.00
4.79
2128
2907
2.823154
CGGACAAATAGCAAGGGGAAAA
59.177
45.455
0.00
0.00
0.00
2.29
2211
3008
3.487372
AGATGTGGAATATCGTCGAGGA
58.513
45.455
10.66
10.66
39.70
3.71
2222
3019
3.431922
TCGTCGAGGAATCACAATACC
57.568
47.619
5.12
0.00
0.00
2.73
2274
3073
0.953471
GCGTGTGTATCAAGCCCACA
60.953
55.000
0.00
0.00
43.69
4.17
2323
3122
3.243636
ACGAGTACCATTGAACACGAACT
60.244
43.478
12.94
0.00
34.45
3.01
2327
3126
5.816919
AGTACCATTGAACACGAACTTTTG
58.183
37.500
0.00
0.00
0.00
2.44
2409
3209
3.192422
CGTCAATGGGCAAAGATAAACCA
59.808
43.478
0.00
0.00
35.39
3.67
2452
3252
1.209898
CGCCGCAACACAATGACAT
59.790
52.632
0.00
0.00
0.00
3.06
2467
3267
0.741915
GACATCCACGAGAGGGTCTC
59.258
60.000
0.00
0.00
40.06
3.36
2518
3319
4.575885
CCTTCACAAGGGAAAATAGACGA
58.424
43.478
0.00
0.00
45.27
4.20
2592
3394
1.302949
CCACCATCGACCCCAATGT
59.697
57.895
0.00
0.00
0.00
2.71
2647
3449
2.250031
ACATGCACCACACCAATCAAT
58.750
42.857
0.00
0.00
0.00
2.57
2655
3457
2.019249
CACACCAATCAATCGAGCCAT
58.981
47.619
0.00
0.00
0.00
4.40
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
0.394762
TCATGAGCTGGCATCCAACC
60.395
55.000
0.00
0.00
30.80
3.77
28
29
1.261938
TATGTCCGGGGTGTCCACAG
61.262
60.000
0.00
0.00
34.36
3.66
41
42
2.878406
CCAAATGTCCACGGATATGTCC
59.122
50.000
0.00
0.00
41.40
4.02
42
43
3.804036
TCCAAATGTCCACGGATATGTC
58.196
45.455
0.00
0.00
0.00
3.06
49
51
1.806542
CAAGACTCCAAATGTCCACGG
59.193
52.381
0.00
0.00
35.21
4.94
51
53
4.499696
CCAAACAAGACTCCAAATGTCCAC
60.500
45.833
0.00
0.00
35.21
4.02
81
83
8.294690
TGGAGTTACCCTTAAGACTTATCCTAT
58.705
37.037
3.36
0.00
38.00
2.57
85
87
6.755607
CGTTGGAGTTACCCTTAAGACTTATC
59.244
42.308
3.36
0.00
38.00
1.75
87
89
5.567423
GCGTTGGAGTTACCCTTAAGACTTA
60.567
44.000
3.36
0.00
38.00
2.24
100
102
0.793861
GCGTTCATGCGTTGGAGTTA
59.206
50.000
0.00
0.00
0.00
2.24
125
127
1.469703
TCGACGCGGATCTAAACAGAA
59.530
47.619
12.47
0.00
0.00
3.02
138
140
0.363512
CTGTGATTTCTGTCGACGCG
59.636
55.000
11.62
3.53
0.00
6.01
140
142
0.716108
GGCTGTGATTTCTGTCGACG
59.284
55.000
11.62
6.07
0.00
5.12
157
159
0.814457
TTTATGTCCGTGCATTGGGC
59.186
50.000
5.65
5.65
45.13
5.36
166
168
5.048991
GGACACAAAACAGATTTATGTCCGT
60.049
40.000
15.58
0.00
45.29
4.69
177
179
2.305928
CCCACATGGACACAAAACAGA
58.694
47.619
0.00
0.00
37.39
3.41
178
180
1.269726
GCCCACATGGACACAAAACAG
60.270
52.381
0.00
0.00
37.39
3.16
179
181
0.749649
GCCCACATGGACACAAAACA
59.250
50.000
0.00
0.00
37.39
2.83
197
199
0.458370
AATTTGAGGCGGATTTGCGC
60.458
50.000
8.00
8.00
35.06
6.09
204
206
0.958382
CGACCCAAATTTGAGGCGGA
60.958
55.000
19.28
0.00
0.00
5.54
221
223
0.537653
TCGTATGGATGCAAACCCGA
59.462
50.000
10.15
9.11
0.00
5.14
222
224
1.063469
GTTCGTATGGATGCAAACCCG
59.937
52.381
10.15
7.27
0.00
5.28
236
238
0.179181
GCGGTCGTCTCATGTTCGTA
60.179
55.000
0.00
0.00
0.00
3.43
263
265
3.255379
GGCGGACATCGAGCGAAC
61.255
66.667
0.00
0.00
42.43
3.95
271
273
1.043673
AGGACTGTAGGGCGGACATC
61.044
60.000
0.00
0.00
0.00
3.06
272
274
0.617820
AAGGACTGTAGGGCGGACAT
60.618
55.000
0.00
0.00
0.00
3.06
312
314
1.950973
GAGGGAGAAGAGTGGGCGTC
61.951
65.000
0.00
0.00
0.00
5.19
313
315
1.985116
GAGGGAGAAGAGTGGGCGT
60.985
63.158
0.00
0.00
0.00
5.68
335
341
1.691195
TATCGAGCGATTGGGGGCAA
61.691
55.000
10.89
0.00
36.17
4.52
345
351
1.141019
GTTGGGCACTATCGAGCGA
59.859
57.895
0.00
0.00
0.00
4.93
377
383
4.785453
CCCTCTCCGGCCAACAGC
62.785
72.222
2.24
0.00
42.60
4.40
379
385
2.406002
GAAACCCTCTCCGGCCAACA
62.406
60.000
2.24
0.00
0.00
3.33
381
387
2.754375
GAAACCCTCTCCGGCCAA
59.246
61.111
2.24
0.00
0.00
4.52
382
388
3.702048
CGAAACCCTCTCCGGCCA
61.702
66.667
2.24
0.00
0.00
5.36
385
391
2.264794
CACCGAAACCCTCTCCGG
59.735
66.667
0.00
0.00
46.65
5.14
427
433
0.100682
TGTATCTTGAGCTCGTCGGC
59.899
55.000
9.64
0.00
0.00
5.54
428
434
1.534175
GGTGTATCTTGAGCTCGTCGG
60.534
57.143
9.64
0.00
0.00
4.79
429
435
1.534175
GGGTGTATCTTGAGCTCGTCG
60.534
57.143
9.64
0.00
0.00
5.12
430
436
1.202428
GGGGTGTATCTTGAGCTCGTC
60.202
57.143
9.64
0.00
0.00
4.20
431
437
0.824759
GGGGTGTATCTTGAGCTCGT
59.175
55.000
9.64
0.00
0.00
4.18
439
445
2.364579
TCCGCGGGGGTGTATCTT
60.365
61.111
27.83
0.00
37.00
2.40
465
474
1.542492
GGTCGTGGAGGAAGTCTACA
58.458
55.000
0.00
0.00
36.44
2.74
467
476
0.679002
CGGGTCGTGGAGGAAGTCTA
60.679
60.000
0.00
0.00
0.00
2.59
503
512
0.251297
CCAGGTGTCCCAATTCAGCA
60.251
55.000
0.00
0.00
34.97
4.41
506
515
1.544537
CGAACCAGGTGTCCCAATTCA
60.545
52.381
0.00
0.00
0.00
2.57
510
519
1.147376
CACGAACCAGGTGTCCCAA
59.853
57.895
0.00
0.00
0.00
4.12
551
560
2.352032
CGGGAGGCGAAGAAGGACT
61.352
63.158
0.00
0.00
0.00
3.85
586
595
2.809174
CTCAATCGCCGCACGTGA
60.809
61.111
22.23
0.00
44.19
4.35
597
606
1.689582
ACCGGTCTCCCCCTCAATC
60.690
63.158
0.00
0.00
0.00
2.67
634
643
0.609957
TCCTCGACGGCCTTCTTGTA
60.610
55.000
7.75
0.00
0.00
2.41
721
731
1.352156
GACTTGGGCACGACGACATC
61.352
60.000
0.00
0.00
0.00
3.06
722
732
1.374252
GACTTGGGCACGACGACAT
60.374
57.895
0.00
0.00
0.00
3.06
723
733
2.028484
GACTTGGGCACGACGACA
59.972
61.111
0.00
0.00
0.00
4.35
724
734
3.103911
CGACTTGGGCACGACGAC
61.104
66.667
0.00
0.00
0.00
4.34
725
735
4.351938
CCGACTTGGGCACGACGA
62.352
66.667
0.00
0.00
0.00
4.20
726
736
4.351938
TCCGACTTGGGCACGACG
62.352
66.667
0.00
0.00
38.76
5.12
727
737
2.432628
CTCCGACTTGGGCACGAC
60.433
66.667
0.00
0.00
38.76
4.34
728
738
4.373116
GCTCCGACTTGGGCACGA
62.373
66.667
0.00
0.00
38.76
4.35
729
739
4.680237
TGCTCCGACTTGGGCACG
62.680
66.667
0.00
0.00
38.50
5.34
731
741
4.680237
CGTGCTCCGACTTGGGCA
62.680
66.667
0.00
0.00
40.31
5.36
735
745
3.036084
AACGCGTGCTCCGACTTG
61.036
61.111
14.98
0.00
39.56
3.16
736
746
3.036084
CAACGCGTGCTCCGACTT
61.036
61.111
14.98
0.00
39.56
3.01
739
749
4.717629
CTCCAACGCGTGCTCCGA
62.718
66.667
14.98
3.01
39.56
4.55
758
768
1.956477
CTTATCTTGGGGGCAAATCCG
59.044
52.381
0.00
0.00
34.94
4.18
815
830
5.873164
GCCTGCTTCAAATCTCAATCATTTT
59.127
36.000
0.00
0.00
0.00
1.82
821
836
3.366679
CGTTGCCTGCTTCAAATCTCAAT
60.367
43.478
0.00
0.00
0.00
2.57
826
851
3.126858
TCATACGTTGCCTGCTTCAAATC
59.873
43.478
0.00
0.00
0.00
2.17
831
856
1.202076
GCTTCATACGTTGCCTGCTTC
60.202
52.381
0.00
0.00
0.00
3.86
1017
1069
0.106519
CCATGGGGGAGCTCGATTTT
60.107
55.000
7.83
0.00
40.01
1.82
1342
1394
2.187163
GCGGTAGGAGAGGTTGGC
59.813
66.667
0.00
0.00
0.00
4.52
1518
1570
4.404098
ACGGTGGTGGCGGATTCC
62.404
66.667
0.00
0.00
0.00
3.01
1604
1656
1.758514
ATCTCCATGACGGCGACCT
60.759
57.895
16.62
0.00
29.06
3.85
1669
1721
0.791238
GCGAGATCCGTCGATCATCG
60.791
60.000
0.00
0.00
46.42
3.84
1670
1722
0.455295
GGCGAGATCCGTCGATCATC
60.455
60.000
8.43
0.00
46.42
2.92
1671
1723
1.581954
GGCGAGATCCGTCGATCAT
59.418
57.895
8.43
0.00
46.42
2.45
1672
1724
3.031495
GGCGAGATCCGTCGATCA
58.969
61.111
8.43
0.00
46.42
2.92
1756
1826
0.182537
TAGCTGCACACACCAAACCT
59.817
50.000
1.02
0.00
0.00
3.50
1757
1827
0.310854
GTAGCTGCACACACCAAACC
59.689
55.000
1.02
0.00
0.00
3.27
1798
1874
0.248289
TTCAATCCTCGGTCGAACCC
59.752
55.000
0.00
0.00
33.75
4.11
1799
1875
2.088950
TTTCAATCCTCGGTCGAACC
57.911
50.000
0.00
0.00
34.05
3.62
1800
1876
4.680171
AAATTTCAATCCTCGGTCGAAC
57.320
40.909
0.00
0.00
0.00
3.95
1801
1877
6.205076
TGTTTAAATTTCAATCCTCGGTCGAA
59.795
34.615
0.00
0.00
0.00
3.71
1802
1878
5.701750
TGTTTAAATTTCAATCCTCGGTCGA
59.298
36.000
0.00
0.00
0.00
4.20
1803
1879
5.933790
TGTTTAAATTTCAATCCTCGGTCG
58.066
37.500
0.00
0.00
0.00
4.79
1804
1880
5.800438
GCTGTTTAAATTTCAATCCTCGGTC
59.200
40.000
0.00
0.00
0.00
4.79
1805
1881
5.619086
CGCTGTTTAAATTTCAATCCTCGGT
60.619
40.000
0.00
0.00
0.00
4.69
1806
1882
4.793216
CGCTGTTTAAATTTCAATCCTCGG
59.207
41.667
0.00
0.00
0.00
4.63
1807
1883
4.793216
CCGCTGTTTAAATTTCAATCCTCG
59.207
41.667
0.00
0.00
0.00
4.63
1852
1928
0.387112
CGCACGTACGGGTAGAACAA
60.387
55.000
20.35
0.00
0.00
2.83
1861
1938
1.876714
CCCAATCTCGCACGTACGG
60.877
63.158
21.06
9.73
0.00
4.02
1880
1957
6.366332
GCTTATCGTCAGATCGGATACAAATT
59.634
38.462
0.00
0.00
38.26
1.82
1890
1967
5.289917
AGTCATAGCTTATCGTCAGATCG
57.710
43.478
0.00
0.00
38.26
3.69
2030
2809
9.750125
GAGCCGATTTTTCTTATAAATTGGATT
57.250
29.630
15.48
5.65
42.39
3.01
2050
2829
2.045561
TGTTCAGGTTTTTGAGCCGA
57.954
45.000
0.00
0.00
0.00
5.54
2106
2885
1.281419
TCCCCTTGCTATTTGTCCGA
58.719
50.000
0.00
0.00
0.00
4.55
2199
2996
5.243060
TGGTATTGTGATTCCTCGACGATAT
59.757
40.000
0.00
0.00
0.00
1.63
2201
2998
3.383505
TGGTATTGTGATTCCTCGACGAT
59.616
43.478
0.00
0.00
0.00
3.73
2264
3062
1.340502
TGAGTTGTGTTGTGGGCTTGA
60.341
47.619
0.00
0.00
0.00
3.02
2266
3064
1.846007
TTGAGTTGTGTTGTGGGCTT
58.154
45.000
0.00
0.00
0.00
4.35
2274
3073
3.446873
TGTGGATGCTTTTGAGTTGTGTT
59.553
39.130
0.00
0.00
0.00
3.32
2409
3209
4.437239
CTTCGTGCTCTTGGTGATATCTT
58.563
43.478
3.98
0.00
0.00
2.40
2467
3267
1.122849
GTTGTTGTTGTGCATGCTCG
58.877
50.000
20.33
0.00
0.00
5.03
2512
3313
3.050703
GTCGTAGGACGGTCGTCTA
57.949
57.895
20.55
9.98
42.81
2.59
2555
3357
2.093075
TGGTTGTTCGGTGGTGTTCTTA
60.093
45.455
0.00
0.00
0.00
2.10
2608
3410
2.095161
TGTTTGTTGTGGGTTTGACGAC
60.095
45.455
0.00
0.00
0.00
4.34
2609
3411
2.160205
TGTTTGTTGTGGGTTTGACGA
58.840
42.857
0.00
0.00
0.00
4.20
2647
3449
2.764128
GTCTGGGGGATGGCTCGA
60.764
66.667
0.00
0.00
0.00
4.04
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.