Multiple sequence alignment - TraesCS4B01G122600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G122600 chr4B 100.000 5233 0 0 1 5233 145807762 145802530 0.000000e+00 9664.0
1 TraesCS4B01G122600 chr4A 93.599 2734 111 28 815 3522 473686372 473689067 0.000000e+00 4021.0
2 TraesCS4B01G122600 chr4A 92.571 1346 61 7 3757 5084 473689290 473690614 0.000000e+00 1895.0
3 TraesCS4B01G122600 chr4A 82.931 539 68 16 1 523 473685834 473686364 1.030000e-126 464.0
4 TraesCS4B01G122600 chr4D 94.477 2245 59 14 815 3031 101657388 101655181 0.000000e+00 3398.0
5 TraesCS4B01G122600 chr4D 96.806 1127 18 2 3523 4631 101653313 101652187 0.000000e+00 1866.0
6 TraesCS4B01G122600 chr4D 98.532 477 3 4 3048 3522 101653834 101653360 0.000000e+00 839.0
7 TraesCS4B01G122600 chr4D 91.957 460 26 6 4630 5088 101652027 101651578 7.390000e-178 634.0
8 TraesCS4B01G122600 chr4D 91.489 94 3 4 3531 3624 403409528 403409616 1.980000e-24 124.0
9 TraesCS4B01G122600 chr4D 93.671 79 4 1 526 604 439780390 439780313 3.310000e-22 117.0
10 TraesCS4B01G122600 chr4D 93.243 74 3 1 527 600 100365011 100365082 1.990000e-19 108.0
11 TraesCS4B01G122600 chr2A 91.667 96 6 2 3534 3628 96243042 96243136 1.180000e-26 132.0
12 TraesCS4B01G122600 chr2A 90.789 76 4 1 525 600 446667938 446668010 1.200000e-16 99.0
13 TraesCS4B01G122600 chr2A 93.651 63 4 0 1511 1573 735351754 735351692 1.550000e-15 95.3
14 TraesCS4B01G122600 chr2A 89.474 76 5 2 525 600 707229189 707229117 5.580000e-15 93.5
15 TraesCS4B01G122600 chr2A 86.517 89 5 2 521 602 398656542 398656630 2.010000e-14 91.6
16 TraesCS4B01G122600 chr6D 87.719 114 7 5 3534 3645 146072907 146072799 5.500000e-25 126.0
17 TraesCS4B01G122600 chr6D 88.679 106 6 5 3530 3634 460573442 460573342 1.980000e-24 124.0
18 TraesCS4B01G122600 chr6D 90.123 81 4 4 527 603 344165920 344165840 9.270000e-18 102.0
19 TraesCS4B01G122600 chr5D 91.489 94 4 3 3534 3627 196857659 196857570 5.500000e-25 126.0
20 TraesCS4B01G122600 chr5D 89.474 57 5 1 1503 1559 539870402 539870457 2.610000e-08 71.3
21 TraesCS4B01G122600 chr2D 92.308 91 1 5 3533 3622 54674240 54674325 1.980000e-24 124.0
22 TraesCS4B01G122600 chr6B 92.135 89 3 3 3534 3622 416897409 416897325 7.120000e-24 122.0
23 TraesCS4B01G122600 chr6B 87.952 83 4 2 527 603 719773004 719772922 5.580000e-15 93.5
24 TraesCS4B01G122600 chr6B 87.654 81 6 2 524 600 171969939 171969859 2.010000e-14 91.6
25 TraesCS4B01G122600 chr5B 92.857 84 4 2 526 607 705275957 705275874 2.560000e-23 121.0
26 TraesCS4B01G122600 chr5B 95.522 67 2 1 5167 5233 711185213 711185148 7.170000e-19 106.0
27 TraesCS4B01G122600 chr5B 87.302 63 4 4 1512 1572 36557883 36557943 9.400000e-08 69.4
28 TraesCS4B01G122600 chr5B 94.872 39 2 0 4758 4796 658228887 658228925 1.570000e-05 62.1
29 TraesCS4B01G122600 chr7A 86.667 105 10 2 3521 3625 90621433 90621333 4.280000e-21 113.0
30 TraesCS4B01G122600 chr1D 77.157 197 30 10 4713 4907 432718226 432718043 3.330000e-17 100.0
31 TraesCS4B01G122600 chr2B 92.308 65 4 1 5169 5233 747174225 747174162 2.010000e-14 91.6
32 TraesCS4B01G122600 chr2B 85.714 56 5 2 4771 4823 714326258 714326203 7.320000e-04 56.5
33 TraesCS4B01G122600 chr7D 88.732 71 6 2 5165 5233 78868022 78867952 9.340000e-13 86.1
34 TraesCS4B01G122600 chr1A 85.714 56 5 3 5169 5224 42466692 42466640 7.320000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G122600 chr4B 145802530 145807762 5232 True 9664.000000 9664 100.000000 1 5233 1 chr4B.!!$R1 5232
1 TraesCS4B01G122600 chr4A 473685834 473690614 4780 False 2126.666667 4021 89.700333 1 5084 3 chr4A.!!$F1 5083
2 TraesCS4B01G122600 chr4D 101651578 101657388 5810 True 1684.250000 3398 95.443000 815 5088 4 chr4D.!!$R2 4273

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
541 553 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.0 0.00 4.37 F
542 554 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.0 0.00 4.12 F
737 749 0.247814 GCGTCATTGAGATGGCAACG 60.248 55.000 0.00 0.0 37.76 4.10 F
1279 1310 0.248498 ACGATGTGCGATAGTCACGG 60.248 55.000 0.00 0.0 44.57 4.94 F
1282 1313 1.065701 GATGTGCGATAGTCACGGTCT 59.934 52.381 0.00 0.0 43.08 3.85 F
1781 1826 1.142688 AGGTTGGATTGTGGGGAGCT 61.143 55.000 0.00 0.0 0.00 4.09 F
1811 1856 1.153147 GGCCAAGGGGATTCTCGAC 60.153 63.158 0.00 0.0 35.59 4.20 F
2491 2540 1.192146 CCCCCTCCGAGTTTCACTCA 61.192 60.000 4.82 0.0 45.30 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 1924 0.249784 CACCTGAGCTCCATCCGATG 60.250 60.000 12.15 0.93 0.00 3.84 R
2198 2246 1.964933 TCAGTTGTGTCGGTGGTATCA 59.035 47.619 0.00 0.00 0.00 2.15 R
2249 2297 2.820787 ACCCAACGACAACACAGAAAAA 59.179 40.909 0.00 0.00 0.00 1.94 R
2510 2559 2.979678 AGCTTTTAACTGGGTCTCCTGA 59.020 45.455 0.00 0.00 36.08 3.86 R
3114 4494 3.547746 AGCCAAAACAAAGAACGGAGTA 58.452 40.909 0.00 0.00 45.00 2.59 R
3537 4965 4.202858 ACTCTTATATTATGGGACGGGGGA 60.203 45.833 0.00 0.00 0.00 4.81 R
3574 5002 4.377897 AGCGTTTTTGACACTAGCTAGTT 58.622 39.130 23.94 14.84 33.46 2.24 R
4236 5695 0.108424 AAGCAGAGTAGAAGCGGCAG 60.108 55.000 1.45 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.263752 CTAGTTACGGCTAGCGACCTC 59.736 57.143 9.00 0.00 33.04 3.85
30 31 3.897681 TAGCGACCTCTGGGGCACA 62.898 63.158 0.00 0.00 41.90 4.57
47 48 3.242739 GGCACAACGTCATCAATATCACC 60.243 47.826 0.00 0.00 0.00 4.02
68 69 5.659440 CCACTTATGGGCACTAAATTTGT 57.341 39.130 0.00 0.00 43.04 2.83
83 85 2.816204 TTTGTGCACAATCATGGTGG 57.184 45.000 31.48 0.00 36.76 4.61
84 86 1.702182 TTGTGCACAATCATGGTGGT 58.298 45.000 27.96 0.00 36.76 4.16
89 91 0.528924 CACAATCATGGTGGTGCTGG 59.471 55.000 0.00 0.00 32.65 4.85
110 112 1.676006 CGGGGTTGCATGTTTATCCTC 59.324 52.381 0.00 0.00 0.00 3.71
116 118 3.920231 TGCATGTTTATCCTCTGCTCT 57.080 42.857 0.00 0.00 34.02 4.09
129 131 3.470709 CTCTGCTCTTTCTTGGTGTTGA 58.529 45.455 0.00 0.00 0.00 3.18
169 172 4.418392 GCATCTTTGACCTGTTATTGCTG 58.582 43.478 0.00 0.00 0.00 4.41
170 173 4.156556 GCATCTTTGACCTGTTATTGCTGA 59.843 41.667 0.00 0.00 0.00 4.26
180 183 4.883585 CCTGTTATTGCTGAAGCCTATTCA 59.116 41.667 0.00 0.00 41.18 2.57
182 185 5.500234 TGTTATTGCTGAAGCCTATTCACT 58.500 37.500 0.00 0.00 41.18 3.41
183 186 5.945784 TGTTATTGCTGAAGCCTATTCACTT 59.054 36.000 0.00 0.00 41.18 3.16
184 187 6.434028 TGTTATTGCTGAAGCCTATTCACTTT 59.566 34.615 0.00 0.00 41.18 2.66
185 188 5.990120 ATTGCTGAAGCCTATTCACTTTT 57.010 34.783 0.00 0.00 41.18 2.27
196 199 5.063204 CCTATTCACTTTTGGACAGTGTCA 58.937 41.667 24.20 8.31 42.12 3.58
197 200 5.707298 CCTATTCACTTTTGGACAGTGTCAT 59.293 40.000 24.20 8.62 42.12 3.06
206 209 1.888512 GGACAGTGTCATGTTTGCCAT 59.111 47.619 24.20 0.00 33.68 4.40
215 218 0.244450 ATGTTTGCCATGTTGCGAGG 59.756 50.000 0.00 0.00 30.69 4.63
226 229 3.763097 TGTTGCGAGGATTTAAGCATG 57.237 42.857 0.00 0.00 39.50 4.06
227 230 3.342719 TGTTGCGAGGATTTAAGCATGA 58.657 40.909 0.00 0.00 39.50 3.07
238 241 5.521372 GGATTTAAGCATGAAGGTTGATTGC 59.479 40.000 0.00 0.00 38.62 3.56
240 243 6.832520 TTTAAGCATGAAGGTTGATTGCTA 57.167 33.333 0.00 0.00 42.50 3.49
241 244 6.832520 TTAAGCATGAAGGTTGATTGCTAA 57.167 33.333 0.00 0.00 42.50 3.09
242 245 5.726980 AAGCATGAAGGTTGATTGCTAAA 57.273 34.783 0.00 0.00 42.50 1.85
243 246 5.927281 AGCATGAAGGTTGATTGCTAAAT 57.073 34.783 0.00 0.00 41.58 1.40
255 259 8.129211 GGTTGATTGCTAAATATGGTTACACTC 58.871 37.037 0.00 0.00 0.00 3.51
267 271 4.053295 TGGTTACACTCTAAAACACTCGC 58.947 43.478 0.00 0.00 0.00 5.03
268 272 4.202182 TGGTTACACTCTAAAACACTCGCT 60.202 41.667 0.00 0.00 0.00 4.93
270 274 5.344396 GGTTACACTCTAAAACACTCGCTAC 59.656 44.000 0.00 0.00 0.00 3.58
295 299 7.301054 CAATTCTCGTTCAATTGTAGCTTCTT 58.699 34.615 5.13 0.00 36.75 2.52
325 329 8.316640 AGTTGAAATTAGAGAGTTAGCAAGTG 57.683 34.615 0.00 0.00 0.00 3.16
331 335 8.499403 AATTAGAGAGTTAGCAAGTGATTTCC 57.501 34.615 0.00 0.00 0.00 3.13
387 391 4.778534 AACATTCTGGCTCATTTCTGTG 57.221 40.909 0.00 0.00 0.00 3.66
397 401 1.675483 TCATTTCTGTGCAAAGCGTGT 59.325 42.857 0.00 0.00 0.00 4.49
407 411 2.699628 CAAAGCGTGTTTGCACTTTG 57.300 45.000 9.87 9.87 43.16 2.77
416 420 4.423732 GTGTTTGCACTTTGAATGTGACT 58.576 39.130 14.45 0.00 42.13 3.41
417 421 4.266029 GTGTTTGCACTTTGAATGTGACTG 59.734 41.667 14.45 0.00 42.13 3.51
422 426 5.904941 TGCACTTTGAATGTGACTGAAATT 58.095 33.333 14.45 0.00 37.60 1.82
425 429 6.292488 GCACTTTGAATGTGACTGAAATTTGG 60.292 38.462 14.45 0.00 37.60 3.28
427 431 4.933505 TGAATGTGACTGAAATTTGGCA 57.066 36.364 0.00 0.00 0.00 4.92
428 432 5.471556 TGAATGTGACTGAAATTTGGCAT 57.528 34.783 0.00 0.00 0.00 4.40
433 437 4.523558 TGTGACTGAAATTTGGCATGATGA 59.476 37.500 0.00 0.00 0.00 2.92
445 457 3.209410 GGCATGATGAAACTCCTAGTGG 58.791 50.000 0.00 0.00 0.00 4.00
453 465 1.446016 AACTCCTAGTGGCCAACCTT 58.554 50.000 7.24 0.00 36.63 3.50
480 492 7.050377 TGGTTGATTATCCAGAGAACATCTTC 58.950 38.462 0.00 0.00 35.47 2.87
481 493 7.050377 GGTTGATTATCCAGAGAACATCTTCA 58.950 38.462 0.00 0.00 35.47 3.02
483 495 8.557864 GTTGATTATCCAGAGAACATCTTCATG 58.442 37.037 0.00 0.00 35.47 3.07
505 517 7.884877 TCATGTGGATAAAACTCTCTGAATTGT 59.115 33.333 0.00 0.00 0.00 2.71
506 518 7.672983 TGTGGATAAAACTCTCTGAATTGTC 57.327 36.000 0.00 0.00 0.00 3.18
536 548 6.812879 AAAACTAAAATTGTACTCCCTCCG 57.187 37.500 0.00 0.00 0.00 4.63
537 549 5.494390 AACTAAAATTGTACTCCCTCCGT 57.506 39.130 0.00 0.00 0.00 4.69
538 550 5.082251 ACTAAAATTGTACTCCCTCCGTC 57.918 43.478 0.00 0.00 0.00 4.79
539 551 3.345508 AAAATTGTACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
540 552 1.201424 AATTGTACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
541 553 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
542 554 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
543 555 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
544 556 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
545 557 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
546 558 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
547 559 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
548 560 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
549 561 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
550 562 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
551 563 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
552 564 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
553 565 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
554 566 4.564821 CCTCCGTCCCAAAATTCTTGTCTA 60.565 45.833 0.00 0.00 0.00 2.59
555 567 4.575885 TCCGTCCCAAAATTCTTGTCTAG 58.424 43.478 0.00 0.00 0.00 2.43
556 568 4.041198 TCCGTCCCAAAATTCTTGTCTAGT 59.959 41.667 0.00 0.00 0.00 2.57
557 569 5.246656 TCCGTCCCAAAATTCTTGTCTAGTA 59.753 40.000 0.00 0.00 0.00 1.82
558 570 6.070424 TCCGTCCCAAAATTCTTGTCTAGTAT 60.070 38.462 0.00 0.00 0.00 2.12
559 571 6.258068 CCGTCCCAAAATTCTTGTCTAGTATC 59.742 42.308 0.00 0.00 0.00 2.24
560 572 7.042335 CGTCCCAAAATTCTTGTCTAGTATCT 58.958 38.462 0.00 0.00 0.00 1.98
561 573 8.195436 CGTCCCAAAATTCTTGTCTAGTATCTA 58.805 37.037 0.00 0.00 0.00 1.98
562 574 9.535878 GTCCCAAAATTCTTGTCTAGTATCTAG 57.464 37.037 0.00 0.00 0.00 2.43
563 575 9.488762 TCCCAAAATTCTTGTCTAGTATCTAGA 57.511 33.333 0.00 0.00 0.00 2.43
564 576 9.535878 CCCAAAATTCTTGTCTAGTATCTAGAC 57.464 37.037 22.41 22.41 43.06 2.59
576 588 8.904834 GTCTAGTATCTAGACAAATCCAAGACA 58.095 37.037 23.55 0.00 42.49 3.41
577 589 9.475620 TCTAGTATCTAGACAAATCCAAGACAA 57.524 33.333 0.00 0.00 0.00 3.18
578 590 9.743057 CTAGTATCTAGACAAATCCAAGACAAG 57.257 37.037 0.00 0.00 0.00 3.16
579 591 8.367660 AGTATCTAGACAAATCCAAGACAAGA 57.632 34.615 0.00 0.00 0.00 3.02
580 592 8.816894 AGTATCTAGACAAATCCAAGACAAGAA 58.183 33.333 0.00 0.00 0.00 2.52
581 593 9.606631 GTATCTAGACAAATCCAAGACAAGAAT 57.393 33.333 0.00 0.00 0.00 2.40
583 595 8.924511 TCTAGACAAATCCAAGACAAGAATTT 57.075 30.769 0.00 0.00 0.00 1.82
584 596 9.354673 TCTAGACAAATCCAAGACAAGAATTTT 57.645 29.630 0.00 0.00 0.00 1.82
585 597 9.403110 CTAGACAAATCCAAGACAAGAATTTTG 57.597 33.333 0.00 0.00 0.00 2.44
586 598 7.212274 AGACAAATCCAAGACAAGAATTTTGG 58.788 34.615 0.00 0.00 41.09 3.28
590 602 5.181690 TCCAAGACAAGAATTTTGGAACG 57.818 39.130 4.84 0.00 44.38 3.95
591 603 4.037446 TCCAAGACAAGAATTTTGGAACGG 59.963 41.667 4.84 1.77 44.38 4.44
592 604 4.037446 CCAAGACAAGAATTTTGGAACGGA 59.963 41.667 0.00 0.00 42.05 4.69
593 605 5.215160 CAAGACAAGAATTTTGGAACGGAG 58.785 41.667 0.00 0.00 0.00 4.63
594 606 3.821033 AGACAAGAATTTTGGAACGGAGG 59.179 43.478 0.00 0.00 0.00 4.30
595 607 2.890945 ACAAGAATTTTGGAACGGAGGG 59.109 45.455 0.00 0.00 0.00 4.30
596 608 3.153919 CAAGAATTTTGGAACGGAGGGA 58.846 45.455 0.00 0.00 0.00 4.20
597 609 3.073274 AGAATTTTGGAACGGAGGGAG 57.927 47.619 0.00 0.00 0.00 4.30
598 610 2.375509 AGAATTTTGGAACGGAGGGAGT 59.624 45.455 0.00 0.00 0.00 3.85
599 611 3.585732 AGAATTTTGGAACGGAGGGAGTA 59.414 43.478 0.00 0.00 0.00 2.59
600 612 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
601 613 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
602 614 1.946984 TTGGAACGGAGGGAGTACAT 58.053 50.000 0.00 0.00 0.00 2.29
603 615 1.191535 TGGAACGGAGGGAGTACATG 58.808 55.000 0.00 0.00 0.00 3.21
604 616 1.272816 TGGAACGGAGGGAGTACATGA 60.273 52.381 0.00 0.00 0.00 3.07
605 617 2.040178 GGAACGGAGGGAGTACATGAT 58.960 52.381 0.00 0.00 0.00 2.45
606 618 3.228453 GGAACGGAGGGAGTACATGATA 58.772 50.000 0.00 0.00 0.00 2.15
607 619 3.640029 GGAACGGAGGGAGTACATGATAA 59.360 47.826 0.00 0.00 0.00 1.75
608 620 4.262079 GGAACGGAGGGAGTACATGATAAG 60.262 50.000 0.00 0.00 0.00 1.73
609 621 3.912248 ACGGAGGGAGTACATGATAAGT 58.088 45.455 0.00 0.00 0.00 2.24
610 622 3.637229 ACGGAGGGAGTACATGATAAGTG 59.363 47.826 0.00 0.00 0.00 3.16
611 623 3.553096 CGGAGGGAGTACATGATAAGTGC 60.553 52.174 0.00 0.00 0.00 4.40
612 624 3.388024 GGAGGGAGTACATGATAAGTGCA 59.612 47.826 0.00 0.00 0.00 4.57
613 625 4.372656 GAGGGAGTACATGATAAGTGCAC 58.627 47.826 9.40 9.40 0.00 4.57
614 626 3.774766 AGGGAGTACATGATAAGTGCACA 59.225 43.478 21.04 0.00 0.00 4.57
615 627 4.410228 AGGGAGTACATGATAAGTGCACAT 59.590 41.667 21.04 10.23 0.00 3.21
616 628 4.512944 GGGAGTACATGATAAGTGCACATG 59.487 45.833 21.04 15.53 44.42 3.21
621 633 4.547406 CATGATAAGTGCACATGTCAGG 57.453 45.455 22.77 19.84 37.29 3.86
622 634 3.701205 TGATAAGTGCACATGTCAGGT 57.299 42.857 21.04 0.00 0.00 4.00
623 635 4.817318 TGATAAGTGCACATGTCAGGTA 57.183 40.909 21.04 0.00 0.00 3.08
624 636 4.503910 TGATAAGTGCACATGTCAGGTAC 58.496 43.478 21.04 0.00 0.00 3.34
625 637 1.795768 AAGTGCACATGTCAGGTACG 58.204 50.000 21.04 0.00 0.00 3.67
626 638 0.966179 AGTGCACATGTCAGGTACGA 59.034 50.000 21.04 0.00 0.00 3.43
627 639 1.067565 AGTGCACATGTCAGGTACGAG 60.068 52.381 21.04 0.00 0.00 4.18
628 640 0.389817 TGCACATGTCAGGTACGAGC 60.390 55.000 0.00 0.00 0.00 5.03
629 641 0.389817 GCACATGTCAGGTACGAGCA 60.390 55.000 0.00 0.00 0.00 4.26
630 642 1.350193 CACATGTCAGGTACGAGCAC 58.650 55.000 0.00 0.00 0.00 4.40
631 643 0.966179 ACATGTCAGGTACGAGCACA 59.034 50.000 0.00 0.00 0.00 4.57
632 644 1.550524 ACATGTCAGGTACGAGCACAT 59.449 47.619 0.00 0.00 0.00 3.21
633 645 1.929169 CATGTCAGGTACGAGCACATG 59.071 52.381 9.91 9.91 38.69 3.21
634 646 1.253100 TGTCAGGTACGAGCACATGA 58.747 50.000 0.00 0.00 36.92 3.07
636 648 1.253100 TCAGGTACGAGCACATGACA 58.747 50.000 0.00 0.00 34.53 3.58
637 649 1.616374 TCAGGTACGAGCACATGACAA 59.384 47.619 0.00 0.00 34.53 3.18
638 650 2.233676 TCAGGTACGAGCACATGACAAT 59.766 45.455 0.00 0.00 34.53 2.71
639 651 3.002791 CAGGTACGAGCACATGACAATT 58.997 45.455 0.00 0.00 32.01 2.32
640 652 3.062639 CAGGTACGAGCACATGACAATTC 59.937 47.826 0.00 0.00 32.01 2.17
641 653 2.351726 GGTACGAGCACATGACAATTCC 59.648 50.000 0.00 0.00 0.00 3.01
642 654 2.183478 ACGAGCACATGACAATTCCA 57.817 45.000 0.00 0.00 0.00 3.53
643 655 2.503331 ACGAGCACATGACAATTCCAA 58.497 42.857 0.00 0.00 0.00 3.53
644 656 2.884012 ACGAGCACATGACAATTCCAAA 59.116 40.909 0.00 0.00 0.00 3.28
645 657 3.236816 CGAGCACATGACAATTCCAAAC 58.763 45.455 0.00 0.00 0.00 2.93
646 658 3.304592 CGAGCACATGACAATTCCAAACA 60.305 43.478 0.00 0.00 0.00 2.83
647 659 4.616604 CGAGCACATGACAATTCCAAACAT 60.617 41.667 0.00 0.00 0.00 2.71
648 660 5.217978 AGCACATGACAATTCCAAACATT 57.782 34.783 0.00 0.00 0.00 2.71
649 661 5.613329 AGCACATGACAATTCCAAACATTT 58.387 33.333 0.00 0.00 0.00 2.32
650 662 6.056884 AGCACATGACAATTCCAAACATTTT 58.943 32.000 0.00 0.00 0.00 1.82
651 663 6.203338 AGCACATGACAATTCCAAACATTTTC 59.797 34.615 0.00 0.00 0.00 2.29
652 664 6.018098 GCACATGACAATTCCAAACATTTTCA 60.018 34.615 0.00 0.00 0.00 2.69
653 665 7.466996 GCACATGACAATTCCAAACATTTTCAA 60.467 33.333 0.00 0.00 0.00 2.69
654 666 7.851963 CACATGACAATTCCAAACATTTTCAAC 59.148 33.333 0.00 0.00 0.00 3.18
655 667 6.580963 TGACAATTCCAAACATTTTCAACG 57.419 33.333 0.00 0.00 0.00 4.10
656 668 5.521735 TGACAATTCCAAACATTTTCAACGG 59.478 36.000 0.00 0.00 0.00 4.44
657 669 5.423886 ACAATTCCAAACATTTTCAACGGT 58.576 33.333 0.00 0.00 0.00 4.83
658 670 6.574350 ACAATTCCAAACATTTTCAACGGTA 58.426 32.000 0.00 0.00 0.00 4.02
659 671 7.042335 ACAATTCCAAACATTTTCAACGGTAA 58.958 30.769 0.00 0.00 0.00 2.85
660 672 7.549488 ACAATTCCAAACATTTTCAACGGTAAA 59.451 29.630 0.00 0.00 0.00 2.01
661 673 8.555361 CAATTCCAAACATTTTCAACGGTAAAT 58.445 29.630 0.00 0.00 0.00 1.40
662 674 8.669946 ATTCCAAACATTTTCAACGGTAAATT 57.330 26.923 0.00 0.00 0.00 1.82
663 675 8.494016 TTCCAAACATTTTCAACGGTAAATTT 57.506 26.923 0.00 0.00 0.00 1.82
664 676 9.595823 TTCCAAACATTTTCAACGGTAAATTTA 57.404 25.926 0.00 0.00 0.00 1.40
665 677 9.250624 TCCAAACATTTTCAACGGTAAATTTAG 57.749 29.630 0.00 0.00 0.00 1.85
666 678 9.036671 CCAAACATTTTCAACGGTAAATTTAGT 57.963 29.630 0.00 0.00 0.00 2.24
667 679 9.842444 CAAACATTTTCAACGGTAAATTTAGTG 57.158 29.630 0.00 0.00 0.00 2.74
668 680 9.804758 AAACATTTTCAACGGTAAATTTAGTGA 57.195 25.926 0.00 0.00 0.00 3.41
669 681 8.791355 ACATTTTCAACGGTAAATTTAGTGAC 57.209 30.769 0.00 0.00 0.00 3.67
670 682 7.588488 ACATTTTCAACGGTAAATTTAGTGACG 59.412 33.333 0.00 4.37 0.00 4.35
671 683 6.601741 TTTCAACGGTAAATTTAGTGACGT 57.398 33.333 0.00 4.97 34.25 4.34
672 684 5.579384 TCAACGGTAAATTTAGTGACGTG 57.421 39.130 14.08 10.24 33.03 4.49
673 685 5.288015 TCAACGGTAAATTTAGTGACGTGA 58.712 37.500 14.08 11.61 33.03 4.35
674 686 5.403166 TCAACGGTAAATTTAGTGACGTGAG 59.597 40.000 14.08 11.28 33.03 3.51
675 687 4.240096 ACGGTAAATTTAGTGACGTGAGG 58.760 43.478 13.13 0.00 0.00 3.86
676 688 4.022068 ACGGTAAATTTAGTGACGTGAGGA 60.022 41.667 13.13 0.00 0.00 3.71
677 689 5.107133 CGGTAAATTTAGTGACGTGAGGAT 58.893 41.667 0.00 0.00 0.00 3.24
678 690 6.127647 ACGGTAAATTTAGTGACGTGAGGATA 60.128 38.462 13.13 0.00 0.00 2.59
679 691 6.417044 CGGTAAATTTAGTGACGTGAGGATAG 59.583 42.308 0.00 0.00 0.00 2.08
680 692 6.200475 GGTAAATTTAGTGACGTGAGGATAGC 59.800 42.308 0.00 0.00 0.00 2.97
681 693 5.339008 AATTTAGTGACGTGAGGATAGCA 57.661 39.130 0.00 0.00 0.00 3.49
682 694 4.371855 TTTAGTGACGTGAGGATAGCAG 57.628 45.455 0.00 0.00 0.00 4.24
683 695 2.130272 AGTGACGTGAGGATAGCAGA 57.870 50.000 0.00 0.00 0.00 4.26
684 696 2.447443 AGTGACGTGAGGATAGCAGAA 58.553 47.619 0.00 0.00 0.00 3.02
685 697 2.826128 AGTGACGTGAGGATAGCAGAAA 59.174 45.455 0.00 0.00 0.00 2.52
686 698 3.449018 AGTGACGTGAGGATAGCAGAAAT 59.551 43.478 0.00 0.00 0.00 2.17
687 699 4.081420 AGTGACGTGAGGATAGCAGAAATT 60.081 41.667 0.00 0.00 0.00 1.82
688 700 4.631813 GTGACGTGAGGATAGCAGAAATTT 59.368 41.667 0.00 0.00 0.00 1.82
689 701 5.810587 GTGACGTGAGGATAGCAGAAATTTA 59.189 40.000 0.00 0.00 0.00 1.40
690 702 5.810587 TGACGTGAGGATAGCAGAAATTTAC 59.189 40.000 0.00 0.00 0.00 2.01
691 703 4.804139 ACGTGAGGATAGCAGAAATTTACG 59.196 41.667 0.00 0.00 0.00 3.18
692 704 4.209288 CGTGAGGATAGCAGAAATTTACGG 59.791 45.833 0.00 0.00 0.00 4.02
693 705 5.116882 GTGAGGATAGCAGAAATTTACGGT 58.883 41.667 0.00 0.00 0.00 4.83
694 706 5.234543 GTGAGGATAGCAGAAATTTACGGTC 59.765 44.000 0.00 0.00 0.00 4.79
695 707 4.704965 AGGATAGCAGAAATTTACGGTCC 58.295 43.478 0.00 0.00 0.00 4.46
696 708 3.493503 GGATAGCAGAAATTTACGGTCCG 59.506 47.826 10.48 10.48 0.00 4.79
697 709 2.467566 AGCAGAAATTTACGGTCCGT 57.532 45.000 22.66 22.66 44.35 4.69
698 710 2.774687 AGCAGAAATTTACGGTCCGTT 58.225 42.857 24.36 3.18 41.54 4.44
699 711 3.929094 AGCAGAAATTTACGGTCCGTTA 58.071 40.909 24.36 11.31 41.54 3.18
700 712 3.681417 AGCAGAAATTTACGGTCCGTTAC 59.319 43.478 24.36 7.98 41.54 2.50
701 713 3.681417 GCAGAAATTTACGGTCCGTTACT 59.319 43.478 24.36 4.61 41.54 2.24
702 714 4.435121 GCAGAAATTTACGGTCCGTTACTG 60.435 45.833 24.36 20.39 41.54 2.74
703 715 4.925054 CAGAAATTTACGGTCCGTTACTGA 59.075 41.667 24.36 0.00 41.54 3.41
704 716 5.406175 CAGAAATTTACGGTCCGTTACTGAA 59.594 40.000 24.36 7.41 41.54 3.02
705 717 5.990996 AGAAATTTACGGTCCGTTACTGAAA 59.009 36.000 24.36 16.46 41.54 2.69
706 718 6.482973 AGAAATTTACGGTCCGTTACTGAAAA 59.517 34.615 24.36 15.71 41.54 2.29
707 719 6.806388 AATTTACGGTCCGTTACTGAAAAT 57.194 33.333 24.36 17.27 41.54 1.82
708 720 6.806388 ATTTACGGTCCGTTACTGAAAATT 57.194 33.333 24.36 2.43 41.54 1.82
709 721 5.594724 TTACGGTCCGTTACTGAAAATTG 57.405 39.130 24.36 0.00 41.54 2.32
710 722 3.469739 ACGGTCCGTTACTGAAAATTGT 58.530 40.909 12.23 0.00 36.35 2.71
711 723 3.495753 ACGGTCCGTTACTGAAAATTGTC 59.504 43.478 12.23 0.00 36.35 3.18
712 724 3.495377 CGGTCCGTTACTGAAAATTGTCA 59.505 43.478 2.08 0.00 36.47 3.58
713 725 4.153475 CGGTCCGTTACTGAAAATTGTCAT 59.847 41.667 2.08 0.00 36.47 3.06
714 726 5.628134 GGTCCGTTACTGAAAATTGTCATC 58.372 41.667 0.00 0.00 0.00 2.92
715 727 5.391629 GGTCCGTTACTGAAAATTGTCATCC 60.392 44.000 0.00 0.00 0.00 3.51
716 728 5.411669 GTCCGTTACTGAAAATTGTCATCCT 59.588 40.000 0.00 0.00 0.00 3.24
717 729 6.001460 TCCGTTACTGAAAATTGTCATCCTT 58.999 36.000 0.00 0.00 0.00 3.36
718 730 6.072728 TCCGTTACTGAAAATTGTCATCCTTG 60.073 38.462 0.00 0.00 0.00 3.61
719 731 5.569059 CGTTACTGAAAATTGTCATCCTTGC 59.431 40.000 0.00 0.00 0.00 4.01
720 732 4.164822 ACTGAAAATTGTCATCCTTGCG 57.835 40.909 0.00 0.00 0.00 4.85
721 733 3.569701 ACTGAAAATTGTCATCCTTGCGT 59.430 39.130 0.00 0.00 0.00 5.24
722 734 4.159377 TGAAAATTGTCATCCTTGCGTC 57.841 40.909 0.00 0.00 0.00 5.19
723 735 3.567585 TGAAAATTGTCATCCTTGCGTCA 59.432 39.130 0.00 0.00 0.00 4.35
724 736 4.218200 TGAAAATTGTCATCCTTGCGTCAT 59.782 37.500 0.00 0.00 0.00 3.06
725 737 4.789012 AAATTGTCATCCTTGCGTCATT 57.211 36.364 0.00 0.00 0.00 2.57
726 738 3.770263 ATTGTCATCCTTGCGTCATTG 57.230 42.857 0.00 0.00 0.00 2.82
727 739 2.470983 TGTCATCCTTGCGTCATTGA 57.529 45.000 0.00 0.00 0.00 2.57
728 740 2.349590 TGTCATCCTTGCGTCATTGAG 58.650 47.619 0.00 0.00 0.00 3.02
729 741 2.028203 TGTCATCCTTGCGTCATTGAGA 60.028 45.455 0.00 0.00 0.00 3.27
730 742 3.201290 GTCATCCTTGCGTCATTGAGAT 58.799 45.455 0.00 0.00 0.00 2.75
731 743 3.002042 GTCATCCTTGCGTCATTGAGATG 59.998 47.826 5.42 5.42 36.29 2.90
732 744 2.028420 TCCTTGCGTCATTGAGATGG 57.972 50.000 0.00 0.00 33.93 3.51
733 745 0.379669 CCTTGCGTCATTGAGATGGC 59.620 55.000 0.00 0.00 34.50 4.40
734 746 1.089112 CTTGCGTCATTGAGATGGCA 58.911 50.000 0.00 0.00 37.76 4.92
735 747 1.469703 CTTGCGTCATTGAGATGGCAA 59.530 47.619 11.48 11.48 42.46 4.52
736 748 0.804364 TGCGTCATTGAGATGGCAAC 59.196 50.000 0.00 0.00 37.76 4.17
737 749 0.247814 GCGTCATTGAGATGGCAACG 60.248 55.000 0.00 0.00 37.76 4.10
738 750 1.358877 CGTCATTGAGATGGCAACGA 58.641 50.000 0.00 0.00 37.76 3.85
739 751 1.731709 CGTCATTGAGATGGCAACGAA 59.268 47.619 0.00 0.00 37.76 3.85
740 752 2.159430 CGTCATTGAGATGGCAACGAAA 59.841 45.455 0.00 0.00 37.76 3.46
741 753 3.364864 CGTCATTGAGATGGCAACGAAAA 60.365 43.478 0.00 0.00 37.76 2.29
742 754 4.545610 GTCATTGAGATGGCAACGAAAAA 58.454 39.130 0.00 0.00 37.81 1.94
743 755 5.163513 GTCATTGAGATGGCAACGAAAAAT 58.836 37.500 0.00 0.00 37.81 1.82
744 756 5.061311 GTCATTGAGATGGCAACGAAAAATG 59.939 40.000 0.00 0.16 37.81 2.32
745 757 4.582701 TTGAGATGGCAACGAAAAATGT 57.417 36.364 0.00 0.00 42.51 2.71
746 758 4.159377 TGAGATGGCAACGAAAAATGTC 57.841 40.909 0.00 0.00 42.51 3.06
747 759 3.567585 TGAGATGGCAACGAAAAATGTCA 59.432 39.130 0.00 0.00 42.51 3.58
748 760 4.161333 GAGATGGCAACGAAAAATGTCAG 58.839 43.478 0.00 0.00 34.18 3.51
749 761 2.791383 TGGCAACGAAAAATGTCAGG 57.209 45.000 0.00 0.00 42.51 3.86
750 762 1.269517 TGGCAACGAAAAATGTCAGGC 60.270 47.619 0.00 0.00 42.51 4.85
751 763 1.052287 GCAACGAAAAATGTCAGGCG 58.948 50.000 0.00 0.00 0.00 5.52
752 764 1.685302 CAACGAAAAATGTCAGGCGG 58.315 50.000 0.00 0.00 0.00 6.13
753 765 0.596082 AACGAAAAATGTCAGGCGGG 59.404 50.000 0.00 0.00 0.00 6.13
754 766 0.250553 ACGAAAAATGTCAGGCGGGA 60.251 50.000 0.00 0.00 0.00 5.14
755 767 0.447801 CGAAAAATGTCAGGCGGGAG 59.552 55.000 0.00 0.00 0.00 4.30
756 768 1.534729 GAAAAATGTCAGGCGGGAGT 58.465 50.000 0.00 0.00 0.00 3.85
757 769 1.200020 GAAAAATGTCAGGCGGGAGTG 59.800 52.381 0.00 0.00 0.00 3.51
758 770 1.244019 AAAATGTCAGGCGGGAGTGC 61.244 55.000 0.00 0.00 0.00 4.40
777 789 4.726416 GTGCCTGTCACTTATCATTTGTG 58.274 43.478 0.00 0.00 42.38 3.33
778 790 4.455533 GTGCCTGTCACTTATCATTTGTGA 59.544 41.667 0.00 0.00 42.38 3.58
779 791 5.048782 GTGCCTGTCACTTATCATTTGTGAA 60.049 40.000 0.00 0.00 41.52 3.18
780 792 5.534278 TGCCTGTCACTTATCATTTGTGAAA 59.466 36.000 0.00 0.00 41.52 2.69
781 793 5.858581 GCCTGTCACTTATCATTTGTGAAAC 59.141 40.000 0.00 0.00 41.52 2.78
782 794 6.294176 GCCTGTCACTTATCATTTGTGAAACT 60.294 38.462 0.00 0.00 41.52 2.66
783 795 7.094805 GCCTGTCACTTATCATTTGTGAAACTA 60.095 37.037 0.00 0.00 41.52 2.24
795 807 9.567848 TCATTTGTGAAACTAAAAACACTTCTC 57.432 29.630 0.00 0.00 34.76 2.87
796 808 9.352784 CATTTGTGAAACTAAAAACACTTCTCA 57.647 29.630 0.00 0.00 34.76 3.27
797 809 8.964420 TTTGTGAAACTAAAAACACTTCTCAG 57.036 30.769 0.00 0.00 38.04 3.35
798 810 6.551736 TGTGAAACTAAAAACACTTCTCAGC 58.448 36.000 0.00 0.00 38.04 4.26
799 811 6.150307 TGTGAAACTAAAAACACTTCTCAGCA 59.850 34.615 0.00 0.00 38.04 4.41
800 812 7.027161 GTGAAACTAAAAACACTTCTCAGCAA 58.973 34.615 0.00 0.00 0.00 3.91
801 813 7.540745 GTGAAACTAAAAACACTTCTCAGCAAA 59.459 33.333 0.00 0.00 0.00 3.68
802 814 8.085296 TGAAACTAAAAACACTTCTCAGCAAAA 58.915 29.630 0.00 0.00 0.00 2.44
803 815 7.812309 AACTAAAAACACTTCTCAGCAAAAC 57.188 32.000 0.00 0.00 0.00 2.43
804 816 7.158099 ACTAAAAACACTTCTCAGCAAAACT 57.842 32.000 0.00 0.00 0.00 2.66
822 834 0.319297 CTGACAAAGGGCAGCAAAGC 60.319 55.000 0.00 0.00 0.00 3.51
1092 1108 0.998945 CCCTCTCTCCCTCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1183 1213 3.068585 CGATCCGTCGGTCGAATAC 57.931 57.895 23.27 5.22 44.00 1.89
1227 1257 4.334759 GTCCAGTTCGCTACTACAGATGTA 59.665 45.833 0.00 0.00 34.56 2.29
1229 1259 4.335874 CCAGTTCGCTACTACAGATGTACT 59.664 45.833 0.00 0.00 34.56 2.73
1241 1272 2.678836 CAGATGTACTCTCCGTTCGTCT 59.321 50.000 0.00 0.00 39.11 4.18
1275 1306 2.757686 TGAGACGATGTGCGATAGTC 57.242 50.000 0.00 1.86 44.57 2.59
1276 1307 2.014128 TGAGACGATGTGCGATAGTCA 58.986 47.619 10.18 0.00 44.57 3.41
1277 1308 2.223272 TGAGACGATGTGCGATAGTCAC 60.223 50.000 10.18 5.75 44.57 3.67
1278 1309 1.113253 GACGATGTGCGATAGTCACG 58.887 55.000 0.00 0.00 44.57 4.35
1279 1310 0.248498 ACGATGTGCGATAGTCACGG 60.248 55.000 0.00 0.00 44.57 4.94
1280 1311 0.248498 CGATGTGCGATAGTCACGGT 60.248 55.000 0.00 0.00 44.57 4.83
1281 1312 1.478137 GATGTGCGATAGTCACGGTC 58.522 55.000 0.00 0.00 43.08 4.79
1282 1313 1.065701 GATGTGCGATAGTCACGGTCT 59.934 52.381 0.00 0.00 43.08 3.85
1364 1398 4.402155 TCAATTTGGTCCTGAATATGCCAC 59.598 41.667 0.00 0.00 0.00 5.01
1367 1401 1.490490 TGGTCCTGAATATGCCACCTC 59.510 52.381 0.00 0.00 0.00 3.85
1374 1408 2.107031 TGAATATGCCACCTCCTGGATG 59.893 50.000 0.00 0.00 43.95 3.51
1395 1429 4.971939 TGATCACTGTCTGATTCCAAACA 58.028 39.130 0.00 0.00 39.96 2.83
1703 1748 2.198827 TTTGGTCTGCGGTGAATGAT 57.801 45.000 0.00 0.00 0.00 2.45
1711 1756 2.606725 CTGCGGTGAATGATCAGAGTTC 59.393 50.000 0.09 0.81 35.88 3.01
1781 1826 1.142688 AGGTTGGATTGTGGGGAGCT 61.143 55.000 0.00 0.00 0.00 4.09
1811 1856 1.153147 GGCCAAGGGGATTCTCGAC 60.153 63.158 0.00 0.00 35.59 4.20
1856 1901 3.054434 TCGATGACCATGGGAAAGTTCAT 60.054 43.478 18.09 14.50 0.00 2.57
1879 1924 1.362406 GCTACTCGCAAGCCCAACTC 61.362 60.000 0.00 0.00 38.92 3.01
1915 1960 3.812053 CAGGTGAGACAGCAAATATAGGC 59.188 47.826 0.00 0.00 33.95 3.93
1948 1993 3.365868 CCACATACATTGGTGAAACACGG 60.366 47.826 0.00 0.00 39.98 4.94
1950 1995 3.886505 ACATACATTGGTGAAACACGGTT 59.113 39.130 0.00 0.00 39.98 4.44
1951 1996 2.861462 ACATTGGTGAAACACGGTTG 57.139 45.000 0.00 0.00 39.98 3.77
1954 1999 3.193691 ACATTGGTGAAACACGGTTGAAA 59.806 39.130 0.00 0.00 39.98 2.69
1955 2000 4.142049 ACATTGGTGAAACACGGTTGAAAT 60.142 37.500 0.00 0.00 39.98 2.17
1956 2001 3.428746 TGGTGAAACACGGTTGAAATG 57.571 42.857 0.00 0.00 39.98 2.32
1972 2017 7.060633 CGGTTGAAATGCAATCAGTAAACTTAC 59.939 37.037 5.79 0.00 37.46 2.34
2017 2065 5.353123 GCCAGGTGATTTACATTCTTCGTTA 59.647 40.000 0.00 0.00 0.00 3.18
2019 2067 6.455113 CCAGGTGATTTACATTCTTCGTTACG 60.455 42.308 0.00 0.00 0.00 3.18
2186 2234 6.917217 AAGTTCTTTAGCATCATACAGCTC 57.083 37.500 0.00 0.00 42.05 4.09
2188 2236 6.047870 AGTTCTTTAGCATCATACAGCTCTG 58.952 40.000 0.00 0.00 42.05 3.35
2198 2246 9.347240 AGCATCATACAGCTCTGTTTATTTTAT 57.653 29.630 7.92 0.00 41.83 1.40
2241 2289 6.310467 TGACAACTCGTAATTGTAGCTTCATC 59.690 38.462 0.00 0.00 40.36 2.92
2249 2297 2.145397 TGTAGCTTCATCTCGGACCT 57.855 50.000 0.00 0.00 0.00 3.85
2265 2313 2.681344 GGACCTTTTTCTGTGTTGTCGT 59.319 45.455 0.00 0.00 0.00 4.34
2489 2538 3.807368 CCCCCTCCGAGTTTCACT 58.193 61.111 0.00 0.00 0.00 3.41
2491 2540 1.192146 CCCCCTCCGAGTTTCACTCA 61.192 60.000 4.82 0.00 45.30 3.41
2744 2794 6.458210 ACTTCAAAACATAAGGAAATGCAGG 58.542 36.000 0.00 0.00 0.00 4.85
2827 2878 2.122783 ATGGAATTGGTGGTGTACGG 57.877 50.000 0.00 0.00 0.00 4.02
3135 4515 2.375146 ACTCCGTTCTTTGTTTTGGCT 58.625 42.857 0.00 0.00 0.00 4.75
3635 5063 5.394883 CGGAGGGAGTAGTTTTGTAGCATTA 60.395 44.000 0.00 0.00 0.00 1.90
3636 5064 6.049790 GGAGGGAGTAGTTTTGTAGCATTAG 58.950 44.000 0.00 0.00 0.00 1.73
3753 5182 9.733556 TCAGATGAAAGTTGGCTATAGTTTTAA 57.266 29.630 0.84 0.00 0.00 1.52
4086 5545 5.700402 AGCCTATTTAGCTCAGGAAGAAA 57.300 39.130 7.56 0.00 34.91 2.52
4108 5567 1.208844 TCTCCTGTCCCCTCGAGACT 61.209 60.000 15.71 0.00 35.21 3.24
4236 5695 3.119708 GGTGCCTGACAAAGATTGATGTC 60.120 47.826 0.00 0.00 44.84 3.06
4297 5757 3.659786 TGGTTGTGAGTAGTGTGCATAC 58.340 45.455 5.29 5.29 0.00 2.39
4321 5781 6.268387 ACAATTTTGTCCATTCTCTTGTCCAT 59.732 34.615 0.00 0.00 36.50 3.41
4696 6335 6.231258 AGTATGTTAGCTAGTGGTTTACCC 57.769 41.667 0.00 0.00 34.29 3.69
4808 6447 2.450502 AGGTGGGGCAGTTGAGGT 60.451 61.111 0.00 0.00 0.00 3.85
4981 6620 3.111484 TCTTTCCAACAAAAGCCCCTTT 58.889 40.909 0.00 0.00 36.41 3.11
5004 6643 2.649312 ACTTCTGTCCCATTTCATCCCA 59.351 45.455 0.00 0.00 0.00 4.37
5041 6680 2.790433 TCTTATTGCGCAGGGAAAAGT 58.210 42.857 11.31 0.00 0.00 2.66
5051 6690 4.385748 GCGCAGGGAAAAGTTCTTTAAATG 59.614 41.667 0.30 0.00 0.00 2.32
5116 6755 0.033366 GCGGGTGCACAAAAAGGAAT 59.967 50.000 20.43 0.00 42.15 3.01
5117 6756 1.782044 CGGGTGCACAAAAAGGAATG 58.218 50.000 20.43 0.00 0.00 2.67
5118 6757 1.605202 CGGGTGCACAAAAAGGAATGG 60.605 52.381 20.43 0.00 0.00 3.16
5119 6758 1.416030 GGGTGCACAAAAAGGAATGGT 59.584 47.619 20.43 0.00 0.00 3.55
5120 6759 2.482864 GGTGCACAAAAAGGAATGGTG 58.517 47.619 20.43 0.00 0.00 4.17
5121 6760 2.102252 GGTGCACAAAAAGGAATGGTGA 59.898 45.455 20.43 0.00 0.00 4.02
5122 6761 3.123050 GTGCACAAAAAGGAATGGTGAC 58.877 45.455 13.17 0.00 0.00 3.67
5123 6762 2.102252 TGCACAAAAAGGAATGGTGACC 59.898 45.455 0.00 0.00 0.00 4.02
5124 6763 2.102252 GCACAAAAAGGAATGGTGACCA 59.898 45.455 6.84 6.84 38.19 4.02
5126 6765 4.309099 CACAAAAAGGAATGGTGACCATG 58.691 43.478 19.32 6.97 44.40 3.66
5127 6766 3.966665 ACAAAAAGGAATGGTGACCATGT 59.033 39.130 19.32 7.68 44.40 3.21
5128 6767 5.010516 CACAAAAAGGAATGGTGACCATGTA 59.989 40.000 19.32 0.00 44.40 2.29
5129 6768 5.010617 ACAAAAAGGAATGGTGACCATGTAC 59.989 40.000 19.32 11.29 44.40 2.90
5130 6769 4.380843 AAAGGAATGGTGACCATGTACA 57.619 40.909 19.32 0.00 44.40 2.90
5131 6770 3.634397 AGGAATGGTGACCATGTACAG 57.366 47.619 19.32 0.00 44.40 2.74
5132 6771 2.912956 AGGAATGGTGACCATGTACAGT 59.087 45.455 19.32 0.00 44.40 3.55
5133 6772 3.330701 AGGAATGGTGACCATGTACAGTT 59.669 43.478 19.32 0.14 44.40 3.16
5134 6773 4.079253 GGAATGGTGACCATGTACAGTTT 58.921 43.478 19.32 0.00 44.40 2.66
5135 6774 5.013704 AGGAATGGTGACCATGTACAGTTTA 59.986 40.000 19.32 0.00 44.40 2.01
5136 6775 5.885912 GGAATGGTGACCATGTACAGTTTAT 59.114 40.000 19.32 0.00 44.40 1.40
5137 6776 6.183360 GGAATGGTGACCATGTACAGTTTATG 60.183 42.308 19.32 0.00 44.40 1.90
5138 6777 5.491323 TGGTGACCATGTACAGTTTATGA 57.509 39.130 0.00 0.00 0.00 2.15
5139 6778 6.061022 TGGTGACCATGTACAGTTTATGAT 57.939 37.500 0.00 0.00 0.00 2.45
5140 6779 7.189079 TGGTGACCATGTACAGTTTATGATA 57.811 36.000 0.00 0.00 0.00 2.15
5141 6780 7.272244 TGGTGACCATGTACAGTTTATGATAG 58.728 38.462 0.00 0.00 0.00 2.08
5142 6781 7.093068 TGGTGACCATGTACAGTTTATGATAGT 60.093 37.037 0.00 0.00 0.00 2.12
5143 6782 7.438459 GGTGACCATGTACAGTTTATGATAGTC 59.562 40.741 0.33 0.00 0.00 2.59
5144 6783 7.438459 GTGACCATGTACAGTTTATGATAGTCC 59.562 40.741 0.33 0.00 0.00 3.85
5145 6784 6.827727 ACCATGTACAGTTTATGATAGTCCC 58.172 40.000 0.33 0.00 0.00 4.46
5146 6785 6.183361 ACCATGTACAGTTTATGATAGTCCCC 60.183 42.308 0.33 0.00 0.00 4.81
5147 6786 6.183361 CCATGTACAGTTTATGATAGTCCCCA 60.183 42.308 0.33 0.00 0.00 4.96
5148 6787 7.453393 CATGTACAGTTTATGATAGTCCCCAT 58.547 38.462 0.33 0.00 0.00 4.00
5149 6788 6.826668 TGTACAGTTTATGATAGTCCCCATG 58.173 40.000 0.00 0.00 0.00 3.66
5150 6789 5.310409 ACAGTTTATGATAGTCCCCATGG 57.690 43.478 4.14 4.14 0.00 3.66
5151 6790 4.726825 ACAGTTTATGATAGTCCCCATGGT 59.273 41.667 11.73 0.00 0.00 3.55
5152 6791 5.163195 ACAGTTTATGATAGTCCCCATGGTC 60.163 44.000 11.73 0.45 0.00 4.02
5153 6792 5.072329 CAGTTTATGATAGTCCCCATGGTCT 59.928 44.000 11.73 8.63 34.25 3.85
5154 6793 5.308237 AGTTTATGATAGTCCCCATGGTCTC 59.692 44.000 11.73 0.00 32.03 3.36
5155 6794 3.645053 ATGATAGTCCCCATGGTCTCT 57.355 47.619 11.73 7.91 32.03 3.10
5156 6795 3.421394 TGATAGTCCCCATGGTCTCTT 57.579 47.619 11.73 0.00 32.03 2.85
5157 6796 3.309296 TGATAGTCCCCATGGTCTCTTC 58.691 50.000 11.73 7.60 32.03 2.87
5158 6797 1.776662 TAGTCCCCATGGTCTCTTCG 58.223 55.000 11.73 0.00 32.03 3.79
5159 6798 1.153349 GTCCCCATGGTCTCTTCGC 60.153 63.158 11.73 0.00 0.00 4.70
5160 6799 1.612146 TCCCCATGGTCTCTTCGCA 60.612 57.895 11.73 0.00 0.00 5.10
5161 6800 0.982852 TCCCCATGGTCTCTTCGCAT 60.983 55.000 11.73 0.00 0.00 4.73
5162 6801 0.533755 CCCCATGGTCTCTTCGCATC 60.534 60.000 11.73 0.00 0.00 3.91
5163 6802 0.178767 CCCATGGTCTCTTCGCATCA 59.821 55.000 11.73 0.00 0.00 3.07
5164 6803 1.407299 CCCATGGTCTCTTCGCATCAA 60.407 52.381 11.73 0.00 0.00 2.57
5165 6804 2.569059 CCATGGTCTCTTCGCATCAAT 58.431 47.619 2.57 0.00 0.00 2.57
5166 6805 2.947652 CCATGGTCTCTTCGCATCAATT 59.052 45.455 2.57 0.00 0.00 2.32
5167 6806 3.379372 CCATGGTCTCTTCGCATCAATTT 59.621 43.478 2.57 0.00 0.00 1.82
5168 6807 4.142315 CCATGGTCTCTTCGCATCAATTTT 60.142 41.667 2.57 0.00 0.00 1.82
5169 6808 5.404946 CATGGTCTCTTCGCATCAATTTTT 58.595 37.500 0.00 0.00 0.00 1.94
5199 6838 9.887406 TTCTGAAATGAAAGGTAAAATACGTTC 57.113 29.630 0.00 0.00 35.91 3.95
5200 6839 9.280174 TCTGAAATGAAAGGTAAAATACGTTCT 57.720 29.630 0.00 0.00 35.91 3.01
5203 6842 9.764870 GAAATGAAAGGTAAAATACGTTCTACC 57.235 33.333 0.00 0.00 35.91 3.18
5204 6843 9.511272 AAATGAAAGGTAAAATACGTTCTACCT 57.489 29.630 0.00 2.44 44.85 3.08
5230 6869 5.813080 ATATTTCAAAACAGACCGTAGCC 57.187 39.130 0.00 0.00 0.00 3.93
5231 6870 1.886886 TTCAAAACAGACCGTAGCCC 58.113 50.000 0.00 0.00 0.00 5.19
5232 6871 0.320073 TCAAAACAGACCGTAGCCCG 60.320 55.000 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.394080 AGAGGTCGCTAGCCGTAACT 60.394 55.000 9.66 2.59 38.35 2.24
10 11 4.228567 GCCCCAGAGGTCGCTAGC 62.229 72.222 4.06 4.06 38.26 3.42
21 22 0.888736 TTGATGACGTTGTGCCCCAG 60.889 55.000 0.00 0.00 0.00 4.45
30 31 6.483307 CCATAAGTGGTGATATTGATGACGTT 59.517 38.462 0.00 0.00 40.83 3.99
58 59 5.927689 CACCATGATTGTGCACAAATTTAGT 59.072 36.000 34.06 24.38 39.55 2.24
59 60 5.349270 CCACCATGATTGTGCACAAATTTAG 59.651 40.000 34.06 23.79 39.55 1.85
61 62 4.066490 CCACCATGATTGTGCACAAATTT 58.934 39.130 34.06 19.59 39.55 1.82
63 64 2.633967 ACCACCATGATTGTGCACAAAT 59.366 40.909 34.06 21.82 39.55 2.32
66 67 0.960286 CACCACCATGATTGTGCACA 59.040 50.000 17.42 17.42 32.30 4.57
67 68 3.798646 CACCACCATGATTGTGCAC 57.201 52.632 10.75 10.75 32.30 4.57
86 88 1.247419 TAAACATGCAACCCCGCCAG 61.247 55.000 0.00 0.00 0.00 4.85
89 91 0.102300 GGATAAACATGCAACCCCGC 59.898 55.000 0.00 0.00 0.00 6.13
100 102 5.221925 ACCAAGAAAGAGCAGAGGATAAACA 60.222 40.000 0.00 0.00 0.00 2.83
110 112 3.003068 CACTCAACACCAAGAAAGAGCAG 59.997 47.826 0.00 0.00 0.00 4.24
116 118 2.159254 GCTTGCACTCAACACCAAGAAA 60.159 45.455 3.64 0.00 37.46 2.52
129 131 1.039233 GCCCATGTATGGCTTGCACT 61.039 55.000 5.35 0.00 46.70 4.40
159 161 5.500234 AGTGAATAGGCTTCAGCAATAACA 58.500 37.500 0.30 0.00 44.36 2.41
169 172 4.762251 ACTGTCCAAAAGTGAATAGGCTTC 59.238 41.667 0.00 0.00 0.00 3.86
170 173 4.520492 CACTGTCCAAAAGTGAATAGGCTT 59.480 41.667 0.00 0.00 46.55 4.35
180 183 4.677779 GCAAACATGACACTGTCCAAAAGT 60.678 41.667 6.72 0.00 0.00 2.66
182 185 3.430098 GGCAAACATGACACTGTCCAAAA 60.430 43.478 6.72 0.00 0.00 2.44
183 186 2.100584 GGCAAACATGACACTGTCCAAA 59.899 45.455 6.72 0.00 0.00 3.28
184 187 1.680735 GGCAAACATGACACTGTCCAA 59.319 47.619 6.72 0.00 0.00 3.53
185 188 1.317613 GGCAAACATGACACTGTCCA 58.682 50.000 6.72 0.00 0.00 4.02
196 199 0.244450 CCTCGCAACATGGCAAACAT 59.756 50.000 0.00 0.00 41.57 2.71
197 200 0.821301 TCCTCGCAACATGGCAAACA 60.821 50.000 0.00 0.00 0.00 2.83
206 209 3.342719 TCATGCTTAAATCCTCGCAACA 58.657 40.909 0.00 0.00 35.83 3.33
208 211 3.378112 CCTTCATGCTTAAATCCTCGCAA 59.622 43.478 0.00 0.00 35.83 4.85
215 218 6.335777 AGCAATCAACCTTCATGCTTAAATC 58.664 36.000 0.00 0.00 44.43 2.17
226 229 8.682710 TGTAACCATATTTAGCAATCAACCTTC 58.317 33.333 0.00 0.00 0.00 3.46
227 230 8.466798 GTGTAACCATATTTAGCAATCAACCTT 58.533 33.333 0.00 0.00 0.00 3.50
240 243 8.932791 CGAGTGTTTTAGAGTGTAACCATATTT 58.067 33.333 0.00 0.00 37.80 1.40
241 244 7.064253 GCGAGTGTTTTAGAGTGTAACCATATT 59.936 37.037 0.00 0.00 37.80 1.28
242 245 6.534079 GCGAGTGTTTTAGAGTGTAACCATAT 59.466 38.462 0.00 0.00 37.80 1.78
243 246 5.865552 GCGAGTGTTTTAGAGTGTAACCATA 59.134 40.000 0.00 0.00 37.80 2.74
255 259 5.345202 ACGAGAATTGTAGCGAGTGTTTTAG 59.655 40.000 0.00 0.00 0.00 1.85
257 261 4.056050 ACGAGAATTGTAGCGAGTGTTTT 58.944 39.130 0.00 0.00 0.00 2.43
258 262 3.650139 ACGAGAATTGTAGCGAGTGTTT 58.350 40.909 0.00 0.00 0.00 2.83
270 274 6.835914 AGAAGCTACAATTGAACGAGAATTG 58.164 36.000 13.59 13.35 43.53 2.32
310 314 4.534103 AGGGAAATCACTTGCTAACTCTCT 59.466 41.667 0.00 0.00 0.00 3.10
321 325 9.753674 TGAATATCAAGTAAAGGGAAATCACTT 57.246 29.630 0.00 0.00 42.33 3.16
322 326 9.753674 TTGAATATCAAGTAAAGGGAAATCACT 57.246 29.630 0.00 0.00 31.83 3.41
363 367 5.048224 CACAGAAATGAGCCAGAATGTTTCT 60.048 40.000 0.00 0.00 37.03 2.52
364 368 5.159209 CACAGAAATGAGCCAGAATGTTTC 58.841 41.667 0.00 0.00 0.00 2.78
381 385 1.906757 CAAACACGCTTTGCACAGAA 58.093 45.000 3.47 0.00 0.00 3.02
397 401 4.979943 TCAGTCACATTCAAAGTGCAAA 57.020 36.364 0.00 0.00 36.93 3.68
407 411 5.472148 TCATGCCAAATTTCAGTCACATTC 58.528 37.500 0.00 0.00 0.00 2.67
416 420 5.246656 AGGAGTTTCATCATGCCAAATTTCA 59.753 36.000 0.00 0.00 0.00 2.69
417 421 5.727434 AGGAGTTTCATCATGCCAAATTTC 58.273 37.500 0.00 0.00 0.00 2.17
422 426 4.264253 CACTAGGAGTTTCATCATGCCAA 58.736 43.478 0.00 0.00 0.00 4.52
425 429 2.615912 GCCACTAGGAGTTTCATCATGC 59.384 50.000 0.00 0.00 36.89 4.06
427 431 2.846206 TGGCCACTAGGAGTTTCATCAT 59.154 45.455 0.00 0.00 36.89 2.45
428 432 2.265367 TGGCCACTAGGAGTTTCATCA 58.735 47.619 0.00 0.00 36.89 3.07
433 437 1.446016 AGGTTGGCCACTAGGAGTTT 58.554 50.000 3.88 0.00 36.89 2.66
468 480 8.105829 AGTTTTATCCACATGAAGATGTTCTCT 58.894 33.333 0.00 0.00 41.12 3.10
469 481 8.273780 AGTTTTATCCACATGAAGATGTTCTC 57.726 34.615 0.00 0.00 41.12 2.87
474 486 7.767659 TCAGAGAGTTTTATCCACATGAAGATG 59.232 37.037 0.00 0.00 35.49 2.90
475 487 7.855375 TCAGAGAGTTTTATCCACATGAAGAT 58.145 34.615 0.00 3.49 0.00 2.40
476 488 7.244886 TCAGAGAGTTTTATCCACATGAAGA 57.755 36.000 0.00 0.00 0.00 2.87
477 489 7.912056 TTCAGAGAGTTTTATCCACATGAAG 57.088 36.000 0.00 0.00 0.00 3.02
480 492 8.048534 ACAATTCAGAGAGTTTTATCCACATG 57.951 34.615 0.00 0.00 0.00 3.21
481 493 7.884877 TGACAATTCAGAGAGTTTTATCCACAT 59.115 33.333 0.00 0.00 0.00 3.21
483 495 7.672983 TGACAATTCAGAGAGTTTTATCCAC 57.327 36.000 0.00 0.00 0.00 4.02
517 529 4.439968 GGACGGAGGGAGTACAATTTTAG 58.560 47.826 0.00 0.00 0.00 1.85
518 530 3.198417 GGGACGGAGGGAGTACAATTTTA 59.802 47.826 0.00 0.00 0.00 1.52
520 532 1.558294 GGGACGGAGGGAGTACAATTT 59.442 52.381 0.00 0.00 0.00 1.82
521 533 1.201424 GGGACGGAGGGAGTACAATT 58.799 55.000 0.00 0.00 0.00 2.32
522 534 0.042131 TGGGACGGAGGGAGTACAAT 59.958 55.000 0.00 0.00 0.00 2.71
523 535 0.178926 TTGGGACGGAGGGAGTACAA 60.179 55.000 0.00 0.00 0.00 2.41
524 536 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
525 537 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
526 538 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
527 539 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
528 540 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
529 541 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
530 542 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
531 543 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
532 544 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
533 545 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
534 546 4.324267 ACTAGACAAGAATTTTGGGACGG 58.676 43.478 0.00 0.00 0.00 4.79
535 547 7.042335 AGATACTAGACAAGAATTTTGGGACG 58.958 38.462 0.00 0.00 0.00 4.79
536 548 9.535878 CTAGATACTAGACAAGAATTTTGGGAC 57.464 37.037 0.00 0.00 0.00 4.46
537 549 9.488762 TCTAGATACTAGACAAGAATTTTGGGA 57.511 33.333 0.00 0.00 0.00 4.37
538 550 9.535878 GTCTAGATACTAGACAAGAATTTTGGG 57.464 37.037 24.75 0.00 42.49 4.12
550 562 8.904834 TGTCTTGGATTTGTCTAGATACTAGAC 58.095 37.037 23.64 23.64 43.06 2.59
551 563 9.475620 TTGTCTTGGATTTGTCTAGATACTAGA 57.524 33.333 0.00 4.64 0.00 2.43
552 564 9.743057 CTTGTCTTGGATTTGTCTAGATACTAG 57.257 37.037 0.00 0.00 0.00 2.57
553 565 9.475620 TCTTGTCTTGGATTTGTCTAGATACTA 57.524 33.333 0.00 0.00 0.00 1.82
554 566 8.367660 TCTTGTCTTGGATTTGTCTAGATACT 57.632 34.615 0.00 0.00 0.00 2.12
555 567 9.606631 ATTCTTGTCTTGGATTTGTCTAGATAC 57.393 33.333 0.00 0.00 0.00 2.24
557 569 9.525826 AAATTCTTGTCTTGGATTTGTCTAGAT 57.474 29.630 0.00 0.00 0.00 1.98
558 570 8.924511 AAATTCTTGTCTTGGATTTGTCTAGA 57.075 30.769 0.00 0.00 0.00 2.43
559 571 9.403110 CAAAATTCTTGTCTTGGATTTGTCTAG 57.597 33.333 0.00 0.00 0.00 2.43
560 572 8.359642 CCAAAATTCTTGTCTTGGATTTGTCTA 58.640 33.333 0.00 0.00 40.72 2.59
561 573 7.069826 TCCAAAATTCTTGTCTTGGATTTGTCT 59.930 33.333 3.40 0.00 41.83 3.41
562 574 7.209475 TCCAAAATTCTTGTCTTGGATTTGTC 58.791 34.615 3.40 0.00 41.83 3.18
563 575 7.123355 TCCAAAATTCTTGTCTTGGATTTGT 57.877 32.000 3.40 0.00 41.83 2.83
564 576 7.306749 CGTTCCAAAATTCTTGTCTTGGATTTG 60.307 37.037 7.65 0.00 45.10 2.32
565 577 6.701400 CGTTCCAAAATTCTTGTCTTGGATTT 59.299 34.615 7.65 0.00 45.10 2.17
566 578 6.215845 CGTTCCAAAATTCTTGTCTTGGATT 58.784 36.000 7.65 0.00 45.10 3.01
567 579 5.278957 CCGTTCCAAAATTCTTGTCTTGGAT 60.279 40.000 7.65 0.00 45.10 3.41
568 580 4.037446 CCGTTCCAAAATTCTTGTCTTGGA 59.963 41.667 3.40 3.40 44.32 3.53
569 581 4.037446 TCCGTTCCAAAATTCTTGTCTTGG 59.963 41.667 0.00 0.00 39.80 3.61
570 582 5.181690 TCCGTTCCAAAATTCTTGTCTTG 57.818 39.130 0.00 0.00 0.00 3.02
571 583 4.278419 CCTCCGTTCCAAAATTCTTGTCTT 59.722 41.667 0.00 0.00 0.00 3.01
572 584 3.821033 CCTCCGTTCCAAAATTCTTGTCT 59.179 43.478 0.00 0.00 0.00 3.41
573 585 3.057526 CCCTCCGTTCCAAAATTCTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
574 586 2.890945 CCCTCCGTTCCAAAATTCTTGT 59.109 45.455 0.00 0.00 0.00 3.16
575 587 3.153919 TCCCTCCGTTCCAAAATTCTTG 58.846 45.455 0.00 0.00 0.00 3.02
576 588 3.181433 ACTCCCTCCGTTCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
577 589 2.375509 ACTCCCTCCGTTCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
578 590 2.791655 ACTCCCTCCGTTCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
579 591 2.971901 ACTCCCTCCGTTCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
580 592 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
581 593 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
582 594 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
583 595 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
584 596 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
585 597 1.481871 TCATGTACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
586 598 4.341520 ACTTATCATGTACTCCCTCCGTTC 59.658 45.833 0.00 0.00 0.00 3.95
587 599 4.099573 CACTTATCATGTACTCCCTCCGTT 59.900 45.833 0.00 0.00 0.00 4.44
588 600 3.637229 CACTTATCATGTACTCCCTCCGT 59.363 47.826 0.00 0.00 0.00 4.69
589 601 3.553096 GCACTTATCATGTACTCCCTCCG 60.553 52.174 0.00 0.00 0.00 4.63
590 602 3.388024 TGCACTTATCATGTACTCCCTCC 59.612 47.826 0.00 0.00 0.00 4.30
591 603 4.141937 TGTGCACTTATCATGTACTCCCTC 60.142 45.833 19.41 0.00 34.18 4.30
592 604 3.774766 TGTGCACTTATCATGTACTCCCT 59.225 43.478 19.41 0.00 34.18 4.20
593 605 4.137116 TGTGCACTTATCATGTACTCCC 57.863 45.455 19.41 0.00 34.18 4.30
594 606 5.118990 ACATGTGCACTTATCATGTACTCC 58.881 41.667 19.41 0.00 46.45 3.85
600 612 3.943381 ACCTGACATGTGCACTTATCATG 59.057 43.478 19.41 15.36 42.86 3.07
601 613 4.226427 ACCTGACATGTGCACTTATCAT 57.774 40.909 19.41 0.00 0.00 2.45
602 614 3.701205 ACCTGACATGTGCACTTATCA 57.299 42.857 19.41 15.58 0.00 2.15
603 615 3.551890 CGTACCTGACATGTGCACTTATC 59.448 47.826 19.41 11.34 0.00 1.75
604 616 3.194755 TCGTACCTGACATGTGCACTTAT 59.805 43.478 19.41 0.00 0.00 1.73
605 617 2.559231 TCGTACCTGACATGTGCACTTA 59.441 45.455 19.41 0.00 0.00 2.24
606 618 1.343142 TCGTACCTGACATGTGCACTT 59.657 47.619 19.41 9.21 0.00 3.16
607 619 0.966179 TCGTACCTGACATGTGCACT 59.034 50.000 19.41 0.00 0.00 4.40
608 620 1.350193 CTCGTACCTGACATGTGCAC 58.650 55.000 10.75 10.75 0.00 4.57
609 621 0.389817 GCTCGTACCTGACATGTGCA 60.390 55.000 1.15 0.00 0.00 4.57
610 622 0.389817 TGCTCGTACCTGACATGTGC 60.390 55.000 1.15 0.00 0.00 4.57
611 623 1.336795 TGTGCTCGTACCTGACATGTG 60.337 52.381 1.15 0.00 0.00 3.21
612 624 0.966179 TGTGCTCGTACCTGACATGT 59.034 50.000 0.00 0.00 0.00 3.21
613 625 1.929169 CATGTGCTCGTACCTGACATG 59.071 52.381 0.00 0.00 38.35 3.21
614 626 1.824852 TCATGTGCTCGTACCTGACAT 59.175 47.619 0.00 0.00 0.00 3.06
615 627 1.067846 GTCATGTGCTCGTACCTGACA 60.068 52.381 14.87 0.00 42.27 3.58
616 628 1.067846 TGTCATGTGCTCGTACCTGAC 60.068 52.381 13.56 13.56 42.71 3.51
617 629 1.253100 TGTCATGTGCTCGTACCTGA 58.747 50.000 0.00 0.00 0.00 3.86
618 630 2.078849 TTGTCATGTGCTCGTACCTG 57.921 50.000 0.00 0.00 0.00 4.00
619 631 3.262420 GAATTGTCATGTGCTCGTACCT 58.738 45.455 0.00 0.00 0.00 3.08
620 632 2.351726 GGAATTGTCATGTGCTCGTACC 59.648 50.000 0.00 0.00 0.00 3.34
621 633 3.000041 TGGAATTGTCATGTGCTCGTAC 59.000 45.455 0.00 0.00 0.00 3.67
622 634 3.326836 TGGAATTGTCATGTGCTCGTA 57.673 42.857 0.00 0.00 0.00 3.43
623 635 2.183478 TGGAATTGTCATGTGCTCGT 57.817 45.000 0.00 0.00 0.00 4.18
624 636 3.236816 GTTTGGAATTGTCATGTGCTCG 58.763 45.455 0.00 0.00 0.00 5.03
625 637 4.241590 TGTTTGGAATTGTCATGTGCTC 57.758 40.909 0.00 0.00 0.00 4.26
626 638 4.877378 ATGTTTGGAATTGTCATGTGCT 57.123 36.364 0.00 0.00 0.00 4.40
627 639 5.927954 AAATGTTTGGAATTGTCATGTGC 57.072 34.783 0.00 0.00 0.00 4.57
628 640 7.479897 TGAAAATGTTTGGAATTGTCATGTG 57.520 32.000 0.00 0.00 28.37 3.21
629 641 7.254387 CGTTGAAAATGTTTGGAATTGTCATGT 60.254 33.333 0.00 0.00 32.58 3.21
630 642 7.064674 CGTTGAAAATGTTTGGAATTGTCATG 58.935 34.615 0.00 0.00 32.58 3.07
631 643 6.202570 CCGTTGAAAATGTTTGGAATTGTCAT 59.797 34.615 0.00 0.00 32.58 3.06
632 644 5.521735 CCGTTGAAAATGTTTGGAATTGTCA 59.478 36.000 0.00 0.00 30.92 3.58
633 645 5.522097 ACCGTTGAAAATGTTTGGAATTGTC 59.478 36.000 0.00 0.00 0.00 3.18
634 646 5.423886 ACCGTTGAAAATGTTTGGAATTGT 58.576 33.333 0.00 0.00 0.00 2.71
635 647 5.982465 ACCGTTGAAAATGTTTGGAATTG 57.018 34.783 0.00 0.00 0.00 2.32
636 648 8.669946 ATTTACCGTTGAAAATGTTTGGAATT 57.330 26.923 0.00 0.00 0.00 2.17
637 649 8.669946 AATTTACCGTTGAAAATGTTTGGAAT 57.330 26.923 0.00 0.00 0.00 3.01
638 650 8.494016 AAATTTACCGTTGAAAATGTTTGGAA 57.506 26.923 0.00 0.00 0.00 3.53
639 651 9.250624 CTAAATTTACCGTTGAAAATGTTTGGA 57.749 29.630 0.00 0.00 0.00 3.53
640 652 9.036671 ACTAAATTTACCGTTGAAAATGTTTGG 57.963 29.630 0.00 0.00 0.00 3.28
641 653 9.842444 CACTAAATTTACCGTTGAAAATGTTTG 57.158 29.630 0.00 0.00 0.00 2.93
642 654 9.804758 TCACTAAATTTACCGTTGAAAATGTTT 57.195 25.926 0.00 0.00 0.00 2.83
643 655 9.240159 GTCACTAAATTTACCGTTGAAAATGTT 57.760 29.630 0.00 0.00 0.00 2.71
644 656 7.588488 CGTCACTAAATTTACCGTTGAAAATGT 59.412 33.333 0.00 0.00 0.00 2.71
645 657 7.588488 ACGTCACTAAATTTACCGTTGAAAATG 59.412 33.333 0.00 0.00 0.00 2.32
646 658 7.588488 CACGTCACTAAATTTACCGTTGAAAAT 59.412 33.333 0.00 0.00 0.00 1.82
647 659 6.906143 CACGTCACTAAATTTACCGTTGAAAA 59.094 34.615 0.00 0.00 0.00 2.29
648 660 6.257411 TCACGTCACTAAATTTACCGTTGAAA 59.743 34.615 0.00 0.00 0.00 2.69
649 661 5.752472 TCACGTCACTAAATTTACCGTTGAA 59.248 36.000 0.00 0.00 0.00 2.69
650 662 5.288015 TCACGTCACTAAATTTACCGTTGA 58.712 37.500 0.00 0.00 0.00 3.18
651 663 5.389098 CCTCACGTCACTAAATTTACCGTTG 60.389 44.000 0.00 0.00 0.00 4.10
652 664 4.687483 CCTCACGTCACTAAATTTACCGTT 59.313 41.667 0.00 0.00 0.00 4.44
653 665 4.022068 TCCTCACGTCACTAAATTTACCGT 60.022 41.667 0.00 0.00 0.00 4.83
654 666 4.487948 TCCTCACGTCACTAAATTTACCG 58.512 43.478 0.00 0.00 0.00 4.02
655 667 6.200475 GCTATCCTCACGTCACTAAATTTACC 59.800 42.308 0.00 0.00 0.00 2.85
656 668 6.755141 TGCTATCCTCACGTCACTAAATTTAC 59.245 38.462 0.00 0.00 0.00 2.01
657 669 6.869695 TGCTATCCTCACGTCACTAAATTTA 58.130 36.000 0.00 0.00 0.00 1.40
658 670 5.730550 TGCTATCCTCACGTCACTAAATTT 58.269 37.500 0.00 0.00 0.00 1.82
659 671 5.127194 TCTGCTATCCTCACGTCACTAAATT 59.873 40.000 0.00 0.00 0.00 1.82
660 672 4.645136 TCTGCTATCCTCACGTCACTAAAT 59.355 41.667 0.00 0.00 0.00 1.40
661 673 4.014406 TCTGCTATCCTCACGTCACTAAA 58.986 43.478 0.00 0.00 0.00 1.85
662 674 3.617284 TCTGCTATCCTCACGTCACTAA 58.383 45.455 0.00 0.00 0.00 2.24
663 675 3.277142 TCTGCTATCCTCACGTCACTA 57.723 47.619 0.00 0.00 0.00 2.74
664 676 2.130272 TCTGCTATCCTCACGTCACT 57.870 50.000 0.00 0.00 0.00 3.41
665 677 2.941453 TTCTGCTATCCTCACGTCAC 57.059 50.000 0.00 0.00 0.00 3.67
666 678 4.471904 AATTTCTGCTATCCTCACGTCA 57.528 40.909 0.00 0.00 0.00 4.35
667 679 5.051641 CGTAAATTTCTGCTATCCTCACGTC 60.052 44.000 0.00 0.00 0.00 4.34
668 680 4.804139 CGTAAATTTCTGCTATCCTCACGT 59.196 41.667 0.00 0.00 0.00 4.49
669 681 4.209288 CCGTAAATTTCTGCTATCCTCACG 59.791 45.833 0.00 0.00 0.00 4.35
670 682 5.116882 ACCGTAAATTTCTGCTATCCTCAC 58.883 41.667 0.00 0.00 0.00 3.51
671 683 5.353394 ACCGTAAATTTCTGCTATCCTCA 57.647 39.130 0.00 0.00 0.00 3.86
672 684 4.750598 GGACCGTAAATTTCTGCTATCCTC 59.249 45.833 0.00 0.00 0.00 3.71
673 685 4.704965 GGACCGTAAATTTCTGCTATCCT 58.295 43.478 0.00 0.00 0.00 3.24
674 686 3.493503 CGGACCGTAAATTTCTGCTATCC 59.506 47.826 5.48 0.00 0.00 2.59
675 687 4.117685 ACGGACCGTAAATTTCTGCTATC 58.882 43.478 20.23 0.00 38.73 2.08
676 688 4.133013 ACGGACCGTAAATTTCTGCTAT 57.867 40.909 20.23 0.00 38.73 2.97
677 689 3.598019 ACGGACCGTAAATTTCTGCTA 57.402 42.857 20.23 0.00 38.73 3.49
678 690 2.467566 ACGGACCGTAAATTTCTGCT 57.532 45.000 20.23 0.00 38.73 4.24
679 691 3.681417 AGTAACGGACCGTAAATTTCTGC 59.319 43.478 22.06 6.27 39.99 4.26
680 692 4.925054 TCAGTAACGGACCGTAAATTTCTG 59.075 41.667 22.06 16.94 39.99 3.02
681 693 5.138125 TCAGTAACGGACCGTAAATTTCT 57.862 39.130 22.06 4.79 39.99 2.52
682 694 5.844301 TTCAGTAACGGACCGTAAATTTC 57.156 39.130 22.06 2.20 39.99 2.17
683 695 6.616774 TTTTCAGTAACGGACCGTAAATTT 57.383 33.333 22.06 6.68 39.99 1.82
684 696 6.806388 ATTTTCAGTAACGGACCGTAAATT 57.194 33.333 22.06 7.11 39.99 1.82
685 697 6.205270 ACAATTTTCAGTAACGGACCGTAAAT 59.795 34.615 22.06 17.45 39.99 1.40
686 698 5.526846 ACAATTTTCAGTAACGGACCGTAAA 59.473 36.000 22.06 15.89 39.99 2.01
687 699 5.055812 ACAATTTTCAGTAACGGACCGTAA 58.944 37.500 22.06 9.39 39.99 3.18
688 700 4.630111 ACAATTTTCAGTAACGGACCGTA 58.370 39.130 22.06 6.02 39.99 4.02
689 701 3.469739 ACAATTTTCAGTAACGGACCGT 58.530 40.909 15.37 15.37 43.97 4.83
690 702 3.495377 TGACAATTTTCAGTAACGGACCG 59.505 43.478 13.61 13.61 0.00 4.79
691 703 5.391629 GGATGACAATTTTCAGTAACGGACC 60.392 44.000 0.23 0.00 0.00 4.46
692 704 5.411669 AGGATGACAATTTTCAGTAACGGAC 59.588 40.000 0.23 0.00 0.00 4.79
693 705 5.556915 AGGATGACAATTTTCAGTAACGGA 58.443 37.500 0.23 0.00 0.00 4.69
694 706 5.880054 AGGATGACAATTTTCAGTAACGG 57.120 39.130 0.23 0.00 0.00 4.44
695 707 5.569059 GCAAGGATGACAATTTTCAGTAACG 59.431 40.000 0.23 0.00 0.00 3.18
696 708 5.569059 CGCAAGGATGACAATTTTCAGTAAC 59.431 40.000 0.23 0.00 0.00 2.50
697 709 5.240623 ACGCAAGGATGACAATTTTCAGTAA 59.759 36.000 0.23 0.00 46.39 2.24
698 710 4.759693 ACGCAAGGATGACAATTTTCAGTA 59.240 37.500 0.23 0.00 46.39 2.74
699 711 3.569701 ACGCAAGGATGACAATTTTCAGT 59.430 39.130 0.23 0.00 46.39 3.41
700 712 4.161333 GACGCAAGGATGACAATTTTCAG 58.839 43.478 0.23 0.00 46.39 3.02
701 713 3.567585 TGACGCAAGGATGACAATTTTCA 59.432 39.130 0.00 0.00 46.39 2.69
702 714 4.159377 TGACGCAAGGATGACAATTTTC 57.841 40.909 0.00 0.00 46.39 2.29
703 715 4.789012 ATGACGCAAGGATGACAATTTT 57.211 36.364 0.00 0.00 46.39 1.82
704 716 4.218200 TCAATGACGCAAGGATGACAATTT 59.782 37.500 0.00 0.00 46.39 1.82
705 717 3.758023 TCAATGACGCAAGGATGACAATT 59.242 39.130 0.00 0.00 46.39 2.32
706 718 3.346315 TCAATGACGCAAGGATGACAAT 58.654 40.909 0.00 0.00 46.39 2.71
707 719 2.743664 CTCAATGACGCAAGGATGACAA 59.256 45.455 0.00 0.00 46.39 3.18
708 720 2.028203 TCTCAATGACGCAAGGATGACA 60.028 45.455 0.00 0.00 46.39 3.58
709 721 2.621338 TCTCAATGACGCAAGGATGAC 58.379 47.619 0.00 0.00 46.39 3.06
710 722 3.200483 CATCTCAATGACGCAAGGATGA 58.800 45.455 2.83 0.00 46.39 2.92
711 723 2.289820 CCATCTCAATGACGCAAGGATG 59.710 50.000 2.16 2.16 46.39 3.51
712 724 2.569059 CCATCTCAATGACGCAAGGAT 58.431 47.619 0.00 0.00 46.39 3.24
713 725 2.013563 GCCATCTCAATGACGCAAGGA 61.014 52.381 0.00 0.00 46.39 3.36
714 726 0.379669 GCCATCTCAATGACGCAAGG 59.620 55.000 0.00 0.00 46.39 3.61
715 727 1.469703 TTGCCATCTCAATGACGCAAG 59.530 47.619 0.00 0.00 37.95 4.01
716 728 1.199789 GTTGCCATCTCAATGACGCAA 59.800 47.619 0.00 0.00 39.49 4.85
717 729 0.804364 GTTGCCATCTCAATGACGCA 59.196 50.000 0.00 0.00 34.61 5.24
718 730 0.247814 CGTTGCCATCTCAATGACGC 60.248 55.000 0.00 0.00 35.53 5.19
719 731 1.358877 TCGTTGCCATCTCAATGACG 58.641 50.000 0.00 0.00 37.14 4.35
720 732 3.829886 TTTCGTTGCCATCTCAATGAC 57.170 42.857 0.00 0.00 40.50 3.06
721 733 4.844998 TTTTTCGTTGCCATCTCAATGA 57.155 36.364 0.00 0.00 39.44 2.57
722 734 4.925054 ACATTTTTCGTTGCCATCTCAATG 59.075 37.500 0.00 0.00 35.00 2.82
723 735 5.138125 ACATTTTTCGTTGCCATCTCAAT 57.862 34.783 0.00 0.00 0.00 2.57
724 736 4.037327 TGACATTTTTCGTTGCCATCTCAA 59.963 37.500 0.00 0.00 0.00 3.02
725 737 3.567585 TGACATTTTTCGTTGCCATCTCA 59.432 39.130 0.00 0.00 0.00 3.27
726 738 4.159377 TGACATTTTTCGTTGCCATCTC 57.841 40.909 0.00 0.00 0.00 2.75
727 739 3.057315 CCTGACATTTTTCGTTGCCATCT 60.057 43.478 0.00 0.00 0.00 2.90
728 740 3.244976 CCTGACATTTTTCGTTGCCATC 58.755 45.455 0.00 0.00 0.00 3.51
729 741 2.610232 GCCTGACATTTTTCGTTGCCAT 60.610 45.455 0.00 0.00 0.00 4.40
730 742 1.269517 GCCTGACATTTTTCGTTGCCA 60.270 47.619 0.00 0.00 0.00 4.92
731 743 1.418373 GCCTGACATTTTTCGTTGCC 58.582 50.000 0.00 0.00 0.00 4.52
732 744 1.052287 CGCCTGACATTTTTCGTTGC 58.948 50.000 0.00 0.00 0.00 4.17
733 745 1.665735 CCCGCCTGACATTTTTCGTTG 60.666 52.381 0.00 0.00 0.00 4.10
734 746 0.596082 CCCGCCTGACATTTTTCGTT 59.404 50.000 0.00 0.00 0.00 3.85
735 747 0.250553 TCCCGCCTGACATTTTTCGT 60.251 50.000 0.00 0.00 0.00 3.85
736 748 0.447801 CTCCCGCCTGACATTTTTCG 59.552 55.000 0.00 0.00 0.00 3.46
737 749 1.200020 CACTCCCGCCTGACATTTTTC 59.800 52.381 0.00 0.00 0.00 2.29
738 750 1.247567 CACTCCCGCCTGACATTTTT 58.752 50.000 0.00 0.00 0.00 1.94
739 751 1.244019 GCACTCCCGCCTGACATTTT 61.244 55.000 0.00 0.00 0.00 1.82
740 752 1.675641 GCACTCCCGCCTGACATTT 60.676 57.895 0.00 0.00 0.00 2.32
741 753 2.045926 GCACTCCCGCCTGACATT 60.046 61.111 0.00 0.00 0.00 2.71
753 765 8.908436 TTCACAAATGATAAGTGACAGGCACTC 61.908 40.741 10.16 0.00 45.38 3.51
754 766 7.191425 TTCACAAATGATAAGTGACAGGCACT 61.191 38.462 1.73 1.73 46.88 4.40
755 767 5.048782 TTCACAAATGATAAGTGACAGGCAC 60.049 40.000 0.00 0.00 41.53 5.01
756 768 4.650734 TCACAAATGATAAGTGACAGGCA 58.349 39.130 0.00 0.00 37.36 4.75
757 769 5.627499 TTCACAAATGATAAGTGACAGGC 57.373 39.130 0.00 0.00 41.53 4.85
758 770 7.206981 AGTTTCACAAATGATAAGTGACAGG 57.793 36.000 0.00 0.00 41.53 4.00
769 781 9.567848 GAGAAGTGTTTTTAGTTTCACAAATGA 57.432 29.630 0.00 0.00 33.84 2.57
770 782 9.352784 TGAGAAGTGTTTTTAGTTTCACAAATG 57.647 29.630 0.00 0.00 33.84 2.32
771 783 9.573133 CTGAGAAGTGTTTTTAGTTTCACAAAT 57.427 29.630 0.00 0.00 33.84 2.32
772 784 7.540745 GCTGAGAAGTGTTTTTAGTTTCACAAA 59.459 33.333 0.00 0.00 33.84 2.83
773 785 7.027161 GCTGAGAAGTGTTTTTAGTTTCACAA 58.973 34.615 0.00 0.00 33.84 3.33
774 786 6.150307 TGCTGAGAAGTGTTTTTAGTTTCACA 59.850 34.615 0.00 0.00 33.84 3.58
775 787 6.551736 TGCTGAGAAGTGTTTTTAGTTTCAC 58.448 36.000 0.00 0.00 0.00 3.18
776 788 6.751514 TGCTGAGAAGTGTTTTTAGTTTCA 57.248 33.333 0.00 0.00 0.00 2.69
777 789 8.373256 GTTTTGCTGAGAAGTGTTTTTAGTTTC 58.627 33.333 0.00 0.00 0.00 2.78
778 790 8.088365 AGTTTTGCTGAGAAGTGTTTTTAGTTT 58.912 29.630 0.00 0.00 0.00 2.66
779 791 7.602753 AGTTTTGCTGAGAAGTGTTTTTAGTT 58.397 30.769 0.00 0.00 0.00 2.24
780 792 7.158099 AGTTTTGCTGAGAAGTGTTTTTAGT 57.842 32.000 0.00 0.00 0.00 2.24
795 807 1.136695 TGCCCTTTGTCAGTTTTGCTG 59.863 47.619 0.00 0.00 46.34 4.41
796 808 1.410153 CTGCCCTTTGTCAGTTTTGCT 59.590 47.619 0.00 0.00 0.00 3.91
797 809 1.856802 CTGCCCTTTGTCAGTTTTGC 58.143 50.000 0.00 0.00 0.00 3.68
798 810 1.136695 TGCTGCCCTTTGTCAGTTTTG 59.863 47.619 0.00 0.00 33.09 2.44
799 811 1.484038 TGCTGCCCTTTGTCAGTTTT 58.516 45.000 0.00 0.00 33.09 2.43
800 812 1.484038 TTGCTGCCCTTTGTCAGTTT 58.516 45.000 0.00 0.00 33.09 2.66
801 813 1.410153 CTTTGCTGCCCTTTGTCAGTT 59.590 47.619 0.00 0.00 33.09 3.16
802 814 1.035139 CTTTGCTGCCCTTTGTCAGT 58.965 50.000 0.00 0.00 33.09 3.41
803 815 0.319297 GCTTTGCTGCCCTTTGTCAG 60.319 55.000 0.00 0.00 0.00 3.51
804 816 0.756442 AGCTTTGCTGCCCTTTGTCA 60.756 50.000 0.00 0.00 37.57 3.58
805 817 2.044452 AGCTTTGCTGCCCTTTGTC 58.956 52.632 0.00 0.00 37.57 3.18
806 818 4.282881 AGCTTTGCTGCCCTTTGT 57.717 50.000 0.00 0.00 37.57 2.83
1183 1213 3.108881 CGCGATGTGATCCCGATATAAG 58.891 50.000 0.00 0.00 32.62 1.73
1227 1257 0.592148 GTGTCAGACGAACGGAGAGT 59.408 55.000 0.00 0.00 0.00 3.24
1241 1272 3.866327 TCGTCTCAACAAATTTCGTGTCA 59.134 39.130 0.00 0.00 0.00 3.58
1275 1306 1.280982 CATCAATCCGTGAGACCGTG 58.719 55.000 0.00 0.00 40.43 4.94
1276 1307 0.460284 GCATCAATCCGTGAGACCGT 60.460 55.000 0.00 0.00 40.43 4.83
1277 1308 0.460109 TGCATCAATCCGTGAGACCG 60.460 55.000 0.00 0.00 40.43 4.79
1278 1309 1.293924 CTGCATCAATCCGTGAGACC 58.706 55.000 0.00 0.00 40.43 3.85
1279 1310 1.293924 CCTGCATCAATCCGTGAGAC 58.706 55.000 0.00 0.00 40.43 3.36
1280 1311 0.904649 ACCTGCATCAATCCGTGAGA 59.095 50.000 0.00 0.00 40.43 3.27
1281 1312 1.742761 AACCTGCATCAATCCGTGAG 58.257 50.000 0.00 0.00 40.43 3.51
1282 1313 2.198827 AAACCTGCATCAATCCGTGA 57.801 45.000 0.00 0.00 41.67 4.35
1326 1360 4.761739 CCAAATTGACCTGCTAGTTCAAGA 59.238 41.667 0.00 0.00 0.00 3.02
1364 1398 2.102757 CAGACAGTGATCATCCAGGAGG 59.897 54.545 0.00 0.00 0.00 4.30
1367 1401 4.378774 GAATCAGACAGTGATCATCCAGG 58.621 47.826 0.00 0.00 45.89 4.45
1374 1408 4.756642 TGTGTTTGGAATCAGACAGTGATC 59.243 41.667 0.00 0.00 45.89 2.92
1395 1429 6.482641 CAGCTTGCTAATTATCTCAGTGATGT 59.517 38.462 0.00 0.00 36.65 3.06
1703 1748 1.080501 CGAAGCAGCCGAACTCTGA 60.081 57.895 0.00 0.00 33.54 3.27
1711 1756 1.731613 TTGTACGACGAAGCAGCCG 60.732 57.895 0.00 0.00 0.00 5.52
1811 1856 2.172372 GTGAGCAGCAGCATCCTCG 61.172 63.158 3.17 0.00 45.49 4.63
1879 1924 0.249784 CACCTGAGCTCCATCCGATG 60.250 60.000 12.15 0.93 0.00 3.84
1915 1960 5.105635 ACCAATGTATGTGGAATCAGCTTTG 60.106 40.000 0.00 0.00 39.62 2.77
1923 1968 5.335583 CGTGTTTCACCAATGTATGTGGAAT 60.336 40.000 0.00 0.00 39.62 3.01
1924 1969 4.023622 CGTGTTTCACCAATGTATGTGGAA 60.024 41.667 0.00 0.00 39.62 3.53
2017 2065 2.823747 GGGGCCTGAAATAAGAAAACGT 59.176 45.455 0.84 0.00 0.00 3.99
2019 2067 4.086457 TGAGGGGCCTGAAATAAGAAAAC 58.914 43.478 0.84 0.00 0.00 2.43
2186 2234 8.120465 GTGTCGGTGGTATCATAAAATAAACAG 58.880 37.037 0.00 0.00 0.00 3.16
2188 2236 7.976826 TGTGTCGGTGGTATCATAAAATAAAC 58.023 34.615 0.00 0.00 0.00 2.01
2198 2246 1.964933 TCAGTTGTGTCGGTGGTATCA 59.035 47.619 0.00 0.00 0.00 2.15
2241 2289 2.943033 ACAACACAGAAAAAGGTCCGAG 59.057 45.455 0.00 0.00 0.00 4.63
2249 2297 2.820787 ACCCAACGACAACACAGAAAAA 59.179 40.909 0.00 0.00 0.00 1.94
2265 2313 6.993902 CCAAAAGAGTACTGTAAAGTACCCAA 59.006 38.462 17.99 0.00 44.06 4.12
2510 2559 2.979678 AGCTTTTAACTGGGTCTCCTGA 59.020 45.455 0.00 0.00 36.08 3.86
2744 2794 8.250332 TCATTTGAATAGTACTGGGCATTTTTC 58.750 33.333 5.39 0.00 0.00 2.29
2827 2878 7.185453 GCTATCGAATTCATATGGATTGCTTC 58.815 38.462 14.21 0.00 34.54 3.86
3009 3060 7.561021 TTCATCTAGTGCTACAGAGACTTAG 57.439 40.000 0.00 0.00 0.00 2.18
3114 4494 3.547746 AGCCAAAACAAAGAACGGAGTA 58.452 40.909 0.00 0.00 45.00 2.59
3119 4499 7.220683 CCATATTGATAGCCAAAACAAAGAACG 59.779 37.037 0.00 0.00 38.43 3.95
3537 4965 4.202858 ACTCTTATATTATGGGACGGGGGA 60.203 45.833 0.00 0.00 0.00 4.81
3574 5002 4.377897 AGCGTTTTTGACACTAGCTAGTT 58.622 39.130 23.94 14.84 33.46 2.24
3938 5397 5.234543 GGCGAACTGGTGAAAATCTACTATC 59.765 44.000 0.00 0.00 0.00 2.08
4086 5545 2.066592 TCTCGAGGGGACAGGAGATAT 58.933 52.381 13.56 0.00 36.42 1.63
4236 5695 0.108424 AAGCAGAGTAGAAGCGGCAG 60.108 55.000 1.45 0.00 0.00 4.85
4297 5757 6.088016 TGGACAAGAGAATGGACAAAATTG 57.912 37.500 0.00 0.00 0.00 2.32
4642 6280 8.459911 AATATTTATACCCTGTTACAAGGCAC 57.540 34.615 0.00 0.00 35.85 5.01
4808 6447 9.500785 AATCAGTTTTTCTTTTTCTGAAAACCA 57.499 25.926 14.70 2.39 41.32 3.67
4953 6592 6.463755 GGGGCTTTTGTTGGAAAGAGAAAATA 60.464 38.462 1.82 0.00 38.60 1.40
5004 6643 7.096640 CGCAATAAGAAAAGAATGTTTTCGTGT 60.097 33.333 12.64 4.99 36.93 4.49
5091 6730 0.036388 TTTTGTGCACCCGCCAAAAA 60.036 45.000 15.69 10.22 41.31 1.94
5092 6731 0.036388 TTTTTGTGCACCCGCCAAAA 60.036 45.000 15.69 11.01 41.92 2.44
5093 6732 0.460987 CTTTTTGTGCACCCGCCAAA 60.461 50.000 15.69 4.77 36.87 3.28
5094 6733 1.142748 CTTTTTGTGCACCCGCCAA 59.857 52.632 15.69 0.00 37.32 4.52
5095 6734 2.790791 CCTTTTTGTGCACCCGCCA 61.791 57.895 15.69 0.00 37.32 5.69
5096 6735 2.022240 TTCCTTTTTGTGCACCCGCC 62.022 55.000 15.69 0.00 37.32 6.13
5097 6736 0.033366 ATTCCTTTTTGTGCACCCGC 59.967 50.000 15.69 0.00 39.24 6.13
5098 6737 1.605202 CCATTCCTTTTTGTGCACCCG 60.605 52.381 15.69 0.00 0.00 5.28
5099 6738 1.416030 ACCATTCCTTTTTGTGCACCC 59.584 47.619 15.69 0.00 0.00 4.61
5100 6739 2.102252 TCACCATTCCTTTTTGTGCACC 59.898 45.455 15.69 0.00 0.00 5.01
5101 6740 3.123050 GTCACCATTCCTTTTTGTGCAC 58.877 45.455 10.75 10.75 0.00 4.57
5116 6755 5.491323 TCATAAACTGTACATGGTCACCA 57.509 39.130 0.00 0.00 38.19 4.17
5117 6756 7.272978 ACTATCATAAACTGTACATGGTCACC 58.727 38.462 0.00 0.00 0.00 4.02
5118 6757 7.438459 GGACTATCATAAACTGTACATGGTCAC 59.562 40.741 0.00 0.00 0.00 3.67
5119 6758 7.418597 GGGACTATCATAAACTGTACATGGTCA 60.419 40.741 0.00 0.00 0.00 4.02
5120 6759 6.929606 GGGACTATCATAAACTGTACATGGTC 59.070 42.308 0.00 0.00 0.00 4.02
5121 6760 6.183361 GGGGACTATCATAAACTGTACATGGT 60.183 42.308 0.00 0.00 0.00 3.55
5122 6761 6.183361 TGGGGACTATCATAAACTGTACATGG 60.183 42.308 0.00 0.00 0.00 3.66
5123 6762 6.826668 TGGGGACTATCATAAACTGTACATG 58.173 40.000 0.00 0.00 0.00 3.21
5124 6763 7.453393 CATGGGGACTATCATAAACTGTACAT 58.547 38.462 0.00 0.00 0.00 2.29
5125 6764 6.183361 CCATGGGGACTATCATAAACTGTACA 60.183 42.308 2.85 0.00 35.59 2.90
5126 6765 6.183361 ACCATGGGGACTATCATAAACTGTAC 60.183 42.308 18.09 0.00 38.05 2.90
5127 6766 5.908831 ACCATGGGGACTATCATAAACTGTA 59.091 40.000 18.09 0.00 38.05 2.74
5128 6767 4.726825 ACCATGGGGACTATCATAAACTGT 59.273 41.667 18.09 0.00 38.05 3.55
5129 6768 5.072329 AGACCATGGGGACTATCATAAACTG 59.928 44.000 18.09 0.00 37.42 3.16
5130 6769 5.227593 AGACCATGGGGACTATCATAAACT 58.772 41.667 18.09 0.00 37.42 2.66
5131 6770 5.308237 AGAGACCATGGGGACTATCATAAAC 59.692 44.000 18.09 0.00 39.36 2.01
5132 6771 5.476983 AGAGACCATGGGGACTATCATAAA 58.523 41.667 18.09 0.00 39.36 1.40
5133 6772 5.093236 AGAGACCATGGGGACTATCATAA 57.907 43.478 18.09 0.00 39.36 1.90
5134 6773 4.767000 AGAGACCATGGGGACTATCATA 57.233 45.455 18.09 0.00 39.36 2.15
5135 6774 3.645053 AGAGACCATGGGGACTATCAT 57.355 47.619 18.09 0.00 39.36 2.45
5136 6775 3.309296 GAAGAGACCATGGGGACTATCA 58.691 50.000 18.09 0.00 39.36 2.15
5137 6776 2.297597 CGAAGAGACCATGGGGACTATC 59.702 54.545 18.09 12.18 39.36 2.08
5138 6777 2.320781 CGAAGAGACCATGGGGACTAT 58.679 52.381 18.09 6.92 39.36 2.12
5139 6778 1.776662 CGAAGAGACCATGGGGACTA 58.223 55.000 18.09 0.00 39.36 2.59
5140 6779 1.617947 GCGAAGAGACCATGGGGACT 61.618 60.000 18.09 12.20 42.05 3.85
5141 6780 1.153349 GCGAAGAGACCATGGGGAC 60.153 63.158 18.09 7.22 38.05 4.46
5142 6781 0.982852 ATGCGAAGAGACCATGGGGA 60.983 55.000 18.09 0.00 38.05 4.81
5143 6782 0.533755 GATGCGAAGAGACCATGGGG 60.534 60.000 18.09 0.00 41.29 4.96
5144 6783 0.178767 TGATGCGAAGAGACCATGGG 59.821 55.000 18.09 0.00 0.00 4.00
5145 6784 2.028420 TTGATGCGAAGAGACCATGG 57.972 50.000 11.19 11.19 0.00 3.66
5146 6785 4.627611 AAATTGATGCGAAGAGACCATG 57.372 40.909 0.00 0.00 0.00 3.66
5147 6786 5.649782 AAAAATTGATGCGAAGAGACCAT 57.350 34.783 0.00 0.00 0.00 3.55
5173 6812 9.887406 GAACGTATTTTACCTTTCATTTCAGAA 57.113 29.630 0.00 0.00 0.00 3.02
5174 6813 9.280174 AGAACGTATTTTACCTTTCATTTCAGA 57.720 29.630 0.00 0.00 0.00 3.27
5177 6816 9.764870 GGTAGAACGTATTTTACCTTTCATTTC 57.235 33.333 0.00 0.00 40.74 2.17
5204 6843 9.048446 GGCTACGGTCTGTTTTGAAATATATAA 57.952 33.333 0.00 0.00 0.00 0.98
5205 6844 7.658575 GGGCTACGGTCTGTTTTGAAATATATA 59.341 37.037 0.00 0.00 0.00 0.86
5206 6845 6.485648 GGGCTACGGTCTGTTTTGAAATATAT 59.514 38.462 0.00 0.00 0.00 0.86
5207 6846 5.818857 GGGCTACGGTCTGTTTTGAAATATA 59.181 40.000 0.00 0.00 0.00 0.86
5208 6847 4.638865 GGGCTACGGTCTGTTTTGAAATAT 59.361 41.667 0.00 0.00 0.00 1.28
5209 6848 4.004982 GGGCTACGGTCTGTTTTGAAATA 58.995 43.478 0.00 0.00 0.00 1.40
5210 6849 2.817844 GGGCTACGGTCTGTTTTGAAAT 59.182 45.455 0.00 0.00 0.00 2.17
5211 6850 2.223745 GGGCTACGGTCTGTTTTGAAA 58.776 47.619 0.00 0.00 0.00 2.69
5212 6851 1.874739 CGGGCTACGGTCTGTTTTGAA 60.875 52.381 0.00 0.00 39.42 2.69
5213 6852 0.320073 CGGGCTACGGTCTGTTTTGA 60.320 55.000 0.00 0.00 39.42 2.69
5214 6853 2.159181 CGGGCTACGGTCTGTTTTG 58.841 57.895 0.00 0.00 39.42 2.44
5215 6854 4.687464 CGGGCTACGGTCTGTTTT 57.313 55.556 0.00 0.00 39.42 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.