Multiple sequence alignment - TraesCS4B01G121000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G121000 chr4B 100.000 3181 0 0 1 3181 142673471 142676651 0.000000e+00 5875.0
1 TraesCS4B01G121000 chr4B 90.698 43 2 2 2766 2807 333980022 333980063 4.430000e-04 56.5
2 TraesCS4B01G121000 chr7B 97.041 811 11 2 1246 2055 579000514 579001312 0.000000e+00 1352.0
3 TraesCS4B01G121000 chr7B 86.968 376 30 4 2807 3181 616621035 616620678 3.820000e-109 405.0
4 TraesCS4B01G121000 chr7B 92.481 133 9 1 2811 2943 86976161 86976292 4.190000e-44 189.0
5 TraesCS4B01G121000 chr7B 80.383 209 37 4 2946 3152 664312754 664312960 4.250000e-34 156.0
6 TraesCS4B01G121000 chr7B 98.851 87 1 0 2287 2373 726320346 726320260 4.250000e-34 156.0
7 TraesCS4B01G121000 chr7B 79.899 199 34 6 2946 3140 662310493 662310297 1.190000e-29 141.0
8 TraesCS4B01G121000 chr7B 78.824 170 12 9 1888 2055 90516384 90516237 3.380000e-15 93.5
9 TraesCS4B01G121000 chr4A 93.323 659 28 6 595 1245 476142916 476142266 0.000000e+00 959.0
10 TraesCS4B01G121000 chr4A 91.582 297 12 6 2419 2704 476142054 476141760 6.390000e-107 398.0
11 TraesCS4B01G121000 chr4A 96.137 233 9 0 2056 2288 476142273 476142041 6.440000e-102 381.0
12 TraesCS4B01G121000 chr4A 94.074 135 2 3 2288 2416 568241317 568241183 1.940000e-47 200.0
13 TraesCS4B01G121000 chr4A 93.939 132 7 1 2809 2940 522140233 522140363 6.960000e-47 198.0
14 TraesCS4B01G121000 chr4A 90.698 43 2 2 2766 2807 213268 213309 4.430000e-04 56.5
15 TraesCS4B01G121000 chr2B 94.824 541 19 5 1518 2055 184405901 184405367 0.000000e+00 835.0
16 TraesCS4B01G121000 chr2B 80.795 880 87 42 1247 2057 162014517 162015383 5.830000e-172 614.0
17 TraesCS4B01G121000 chr2B 95.745 235 10 0 1245 1479 184406134 184405900 2.320000e-101 379.0
18 TraesCS4B01G121000 chr2B 93.284 134 8 1 2810 2943 706401597 706401465 2.500000e-46 196.0
19 TraesCS4B01G121000 chr2B 92.683 41 1 2 2766 2805 409915981 409916020 1.230000e-04 58.4
20 TraesCS4B01G121000 chr2B 94.737 38 1 1 2757 2794 797667051 797667087 1.230000e-04 58.4
21 TraesCS4B01G121000 chr1B 94.291 543 30 1 1 542 334677389 334677931 0.000000e+00 830.0
22 TraesCS4B01G121000 chr1B 90.710 549 46 4 1 545 671507604 671508151 0.000000e+00 726.0
23 TraesCS4B01G121000 chr1B 97.802 91 2 0 2283 2373 477940041 477940131 1.180000e-34 158.0
24 TraesCS4B01G121000 chr1B 98.864 88 1 0 2286 2373 550674789 550674876 1.180000e-34 158.0
25 TraesCS4B01G121000 chr1B 98.851 87 1 0 2287 2373 24138145 24138231 4.250000e-34 156.0
26 TraesCS4B01G121000 chr5D 92.791 541 38 1 1 540 396441303 396441843 0.000000e+00 782.0
27 TraesCS4B01G121000 chr4D 92.393 539 40 1 1 538 107699422 107698884 0.000000e+00 767.0
28 TraesCS4B01G121000 chr4D 94.558 294 10 3 955 1245 100336091 100336381 1.740000e-122 449.0
29 TraesCS4B01G121000 chr4D 92.308 299 10 8 2416 2702 100336591 100336888 2.280000e-111 412.0
30 TraesCS4B01G121000 chr4D 95.299 234 10 1 2056 2288 100336374 100336607 1.390000e-98 370.0
31 TraesCS4B01G121000 chr4D 84.383 397 30 11 2811 3177 506029203 506028809 8.390000e-96 361.0
32 TraesCS4B01G121000 chr3D 92.110 545 41 2 1 544 607538965 607538422 0.000000e+00 767.0
33 TraesCS4B01G121000 chr3D 90.809 544 46 4 1 542 456649093 456649634 0.000000e+00 725.0
34 TraesCS4B01G121000 chr3D 100.000 40 0 0 549 588 179948310 179948349 1.220000e-09 75.0
35 TraesCS4B01G121000 chr3D 90.698 43 2 2 2766 2807 12103935 12103976 4.430000e-04 56.5
36 TraesCS4B01G121000 chr7D 91.312 541 46 1 1 540 13317885 13318425 0.000000e+00 737.0
37 TraesCS4B01G121000 chr7D 91.791 134 11 0 2809 2942 45605984 45606117 1.510000e-43 187.0
38 TraesCS4B01G121000 chr5B 91.160 543 42 4 1 540 641816932 641816393 0.000000e+00 732.0
39 TraesCS4B01G121000 chr5B 88.525 305 29 5 1752 2055 459026726 459027025 6.480000e-97 364.0
40 TraesCS4B01G121000 chr5B 78.049 164 32 3 2952 3113 499307839 499308000 2.020000e-17 100.0
41 TraesCS4B01G121000 chr2D 91.095 539 46 2 1 538 3076269 3076806 0.000000e+00 728.0
42 TraesCS4B01G121000 chr2D 89.916 238 18 5 2946 3181 52300273 52300506 5.160000e-78 302.0
43 TraesCS4B01G121000 chr2D 90.370 135 12 1 2809 2943 59322428 59322295 3.260000e-40 176.0
44 TraesCS4B01G121000 chr2D 90.977 133 7 3 2811 2943 288574745 288574872 1.170000e-39 174.0
45 TraesCS4B01G121000 chr1A 80.587 886 89 43 1246 2062 460844837 460845708 9.760000e-170 606.0
46 TraesCS4B01G121000 chr1A 89.130 46 3 2 2766 2810 175873286 175873242 4.430000e-04 56.5
47 TraesCS4B01G121000 chr3A 81.992 472 45 19 1584 2020 471788619 471789085 6.480000e-97 364.0
48 TraesCS4B01G121000 chr3A 82.278 395 52 12 1246 1629 197856487 197856874 3.060000e-85 326.0
49 TraesCS4B01G121000 chr3A 91.189 227 19 1 1246 1472 471788194 471788419 1.110000e-79 307.0
50 TraesCS4B01G121000 chr3A 84.775 289 29 11 1752 2030 197856936 197857219 3.130000e-70 276.0
51 TraesCS4B01G121000 chr3A 87.281 228 25 3 1246 1472 12028321 12028097 1.130000e-64 257.0
52 TraesCS4B01G121000 chr3A 77.262 409 52 28 1499 1888 12028020 12027634 5.380000e-48 202.0
53 TraesCS4B01G121000 chr3A 100.000 40 0 0 549 588 224377521 224377560 1.220000e-09 75.0
54 TraesCS4B01G121000 chr3A 89.130 46 3 2 2766 2810 73608290 73608246 4.430000e-04 56.5
55 TraesCS4B01G121000 chr2A 88.646 229 22 3 1245 1472 723106728 723106953 3.130000e-70 276.0
56 TraesCS4B01G121000 chr5A 87.281 228 25 3 1246 1472 534903734 534903510 1.130000e-64 257.0
57 TraesCS4B01G121000 chr5A 77.340 406 57 23 1499 1888 534903433 534903047 1.160000e-49 207.0
58 TraesCS4B01G121000 chr5A 96.739 92 2 1 2281 2372 619672995 619672905 5.500000e-33 152.0
59 TraesCS4B01G121000 chr3B 92.537 134 8 2 2810 2943 536887727 536887858 1.160000e-44 191.0
60 TraesCS4B01G121000 chr3B 100.000 40 0 0 549 588 257846635 257846674 1.220000e-09 75.0
61 TraesCS4B01G121000 chr6B 96.809 94 3 0 2280 2373 63579331 63579238 1.180000e-34 158.0
62 TraesCS4B01G121000 chr6B 97.778 90 1 1 2284 2373 213633811 213633723 1.530000e-33 154.0
63 TraesCS4B01G121000 chr6A 98.851 87 1 0 2287 2373 144074219 144074133 4.250000e-34 156.0
64 TraesCS4B01G121000 chr6A 90.698 43 2 2 2766 2807 15572465 15572506 4.430000e-04 56.5
65 TraesCS4B01G121000 chrUn 90.698 43 2 2 2766 2807 92804482 92804523 4.430000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G121000 chr4B 142673471 142676651 3180 False 5875.000000 5875 100.000000 1 3181 1 chr4B.!!$F1 3180
1 TraesCS4B01G121000 chr7B 579000514 579001312 798 False 1352.000000 1352 97.041000 1246 2055 1 chr7B.!!$F2 809
2 TraesCS4B01G121000 chr4A 476141760 476142916 1156 True 579.333333 959 93.680667 595 2704 3 chr4A.!!$R2 2109
3 TraesCS4B01G121000 chr2B 162014517 162015383 866 False 614.000000 614 80.795000 1247 2057 1 chr2B.!!$F1 810
4 TraesCS4B01G121000 chr2B 184405367 184406134 767 True 607.000000 835 95.284500 1245 2055 2 chr2B.!!$R2 810
5 TraesCS4B01G121000 chr1B 334677389 334677931 542 False 830.000000 830 94.291000 1 542 1 chr1B.!!$F2 541
6 TraesCS4B01G121000 chr1B 671507604 671508151 547 False 726.000000 726 90.710000 1 545 1 chr1B.!!$F5 544
7 TraesCS4B01G121000 chr5D 396441303 396441843 540 False 782.000000 782 92.791000 1 540 1 chr5D.!!$F1 539
8 TraesCS4B01G121000 chr4D 107698884 107699422 538 True 767.000000 767 92.393000 1 538 1 chr4D.!!$R1 537
9 TraesCS4B01G121000 chr4D 100336091 100336888 797 False 410.333333 449 94.055000 955 2702 3 chr4D.!!$F1 1747
10 TraesCS4B01G121000 chr3D 607538422 607538965 543 True 767.000000 767 92.110000 1 544 1 chr3D.!!$R1 543
11 TraesCS4B01G121000 chr3D 456649093 456649634 541 False 725.000000 725 90.809000 1 542 1 chr3D.!!$F3 541
12 TraesCS4B01G121000 chr7D 13317885 13318425 540 False 737.000000 737 91.312000 1 540 1 chr7D.!!$F1 539
13 TraesCS4B01G121000 chr5B 641816393 641816932 539 True 732.000000 732 91.160000 1 540 1 chr5B.!!$R1 539
14 TraesCS4B01G121000 chr2D 3076269 3076806 537 False 728.000000 728 91.095000 1 538 1 chr2D.!!$F1 537
15 TraesCS4B01G121000 chr1A 460844837 460845708 871 False 606.000000 606 80.587000 1246 2062 1 chr1A.!!$F1 816
16 TraesCS4B01G121000 chr3A 471788194 471789085 891 False 335.500000 364 86.590500 1246 2020 2 chr3A.!!$F3 774
17 TraesCS4B01G121000 chr3A 197856487 197857219 732 False 301.000000 326 83.526500 1246 2030 2 chr3A.!!$F2 784
18 TraesCS4B01G121000 chr3A 12027634 12028321 687 True 229.500000 257 82.271500 1246 1888 2 chr3A.!!$R2 642
19 TraesCS4B01G121000 chr5A 534903047 534903734 687 True 232.000000 257 82.310500 1246 1888 2 chr5A.!!$R2 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
847 860 0.737367 TCTGCAGCCTCGTCGAATTG 60.737 55.0 9.47 0.0 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2799 3053 0.033504 CCGCCACTGCCGACTATAAT 59.966 55.0 0.0 0.0 0.0 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 3.745799 GAGATCCGACATCTCCTCACTA 58.254 50.000 11.44 0.00 38.81 2.74
122 123 2.226330 CATCTCCTCACTAGTCCCTCG 58.774 57.143 0.00 0.00 0.00 4.63
182 183 2.675242 AATCGGGGCGTTGGATCCA 61.675 57.895 11.44 11.44 0.00 3.41
190 191 1.079819 CGTTGGATCCACAGTCGCT 60.080 57.895 15.91 0.00 0.00 4.93
380 382 2.775856 GCCGCCTCAGACGAGATCA 61.776 63.158 0.00 0.00 42.34 2.92
557 566 2.202892 GGCGACCCAGATCGGTTC 60.203 66.667 0.00 0.00 42.49 3.62
558 567 2.582498 GCGACCCAGATCGGTTCG 60.582 66.667 15.47 15.47 42.49 3.95
559 568 2.582498 CGACCCAGATCGGTTCGC 60.582 66.667 9.68 0.00 38.47 4.70
560 569 2.577059 GACCCAGATCGGTTCGCA 59.423 61.111 0.00 0.00 35.79 5.10
561 570 1.519455 GACCCAGATCGGTTCGCAG 60.519 63.158 0.00 0.00 35.79 5.18
562 571 2.227089 GACCCAGATCGGTTCGCAGT 62.227 60.000 0.00 0.00 35.79 4.40
563 572 1.811266 CCCAGATCGGTTCGCAGTG 60.811 63.158 3.47 0.00 0.00 3.66
564 573 1.811266 CCAGATCGGTTCGCAGTGG 60.811 63.158 0.00 0.00 0.00 4.00
565 574 2.125512 AGATCGGTTCGCAGTGGC 60.126 61.111 0.00 0.00 0.00 5.01
566 575 2.434185 GATCGGTTCGCAGTGGCA 60.434 61.111 0.00 0.00 41.24 4.92
567 576 2.031919 ATCGGTTCGCAGTGGCAA 59.968 55.556 0.00 0.00 41.24 4.52
568 577 1.573829 GATCGGTTCGCAGTGGCAAA 61.574 55.000 0.00 0.00 41.24 3.68
569 578 1.852067 ATCGGTTCGCAGTGGCAAAC 61.852 55.000 0.00 0.00 41.24 2.93
570 579 2.051345 GGTTCGCAGTGGCAAACG 60.051 61.111 0.00 0.00 37.82 3.60
571 580 2.713154 GTTCGCAGTGGCAAACGT 59.287 55.556 0.00 0.00 41.24 3.99
572 581 1.654137 GTTCGCAGTGGCAAACGTG 60.654 57.895 0.00 0.00 41.24 4.49
573 582 2.829206 TTCGCAGTGGCAAACGTGG 61.829 57.895 0.00 0.00 41.24 4.94
574 583 3.276091 CGCAGTGGCAAACGTGGA 61.276 61.111 0.00 0.00 41.24 4.02
575 584 2.331451 GCAGTGGCAAACGTGGAC 59.669 61.111 0.00 0.00 40.72 4.02
576 585 2.186826 GCAGTGGCAAACGTGGACT 61.187 57.895 0.00 0.00 40.72 3.85
577 586 1.724582 GCAGTGGCAAACGTGGACTT 61.725 55.000 0.00 0.00 40.72 3.01
578 587 0.738389 CAGTGGCAAACGTGGACTTT 59.262 50.000 0.00 0.00 0.00 2.66
579 588 1.944024 CAGTGGCAAACGTGGACTTTA 59.056 47.619 0.00 0.00 0.00 1.85
580 589 1.944709 AGTGGCAAACGTGGACTTTAC 59.055 47.619 0.00 0.00 0.00 2.01
581 590 1.944709 GTGGCAAACGTGGACTTTACT 59.055 47.619 0.00 0.00 0.00 2.24
582 591 2.356695 GTGGCAAACGTGGACTTTACTT 59.643 45.455 0.00 0.00 0.00 2.24
583 592 2.614983 TGGCAAACGTGGACTTTACTTC 59.385 45.455 0.00 0.00 0.00 3.01
584 593 2.876550 GGCAAACGTGGACTTTACTTCT 59.123 45.455 0.00 0.00 0.00 2.85
585 594 3.059120 GGCAAACGTGGACTTTACTTCTC 60.059 47.826 0.00 0.00 0.00 2.87
586 595 3.558418 GCAAACGTGGACTTTACTTCTCA 59.442 43.478 0.00 0.00 0.00 3.27
587 596 4.552184 GCAAACGTGGACTTTACTTCTCAC 60.552 45.833 0.00 0.00 0.00 3.51
588 597 3.382048 ACGTGGACTTTACTTCTCACC 57.618 47.619 0.00 0.00 0.00 4.02
589 598 2.963782 ACGTGGACTTTACTTCTCACCT 59.036 45.455 0.00 0.00 0.00 4.00
590 599 4.147321 ACGTGGACTTTACTTCTCACCTA 58.853 43.478 0.00 0.00 0.00 3.08
591 600 4.022503 ACGTGGACTTTACTTCTCACCTAC 60.023 45.833 0.00 0.00 0.00 3.18
592 601 4.483311 GTGGACTTTACTTCTCACCTACG 58.517 47.826 0.00 0.00 0.00 3.51
593 602 3.508793 TGGACTTTACTTCTCACCTACGG 59.491 47.826 0.00 0.00 0.00 4.02
598 607 7.201893 GGACTTTACTTCTCACCTACGGATATT 60.202 40.741 0.00 0.00 0.00 1.28
600 609 7.341256 ACTTTACTTCTCACCTACGGATATTGA 59.659 37.037 0.00 0.00 0.00 2.57
605 614 7.451877 ACTTCTCACCTACGGATATTGATGTAT 59.548 37.037 0.00 0.00 0.00 2.29
790 799 5.351458 TCAGTAATCACTCCATCACGAATG 58.649 41.667 0.00 0.00 30.46 2.67
847 860 0.737367 TCTGCAGCCTCGTCGAATTG 60.737 55.000 9.47 0.00 0.00 2.32
878 891 1.135315 CCGGCGATTTGCTTGACAG 59.865 57.895 9.30 0.00 45.43 3.51
879 892 1.135315 CGGCGATTTGCTTGACAGG 59.865 57.895 0.00 0.00 45.43 4.00
880 893 1.577328 CGGCGATTTGCTTGACAGGT 61.577 55.000 0.00 0.00 45.43 4.00
881 894 1.448985 GGCGATTTGCTTGACAGGTA 58.551 50.000 0.00 0.00 45.43 3.08
882 895 2.017049 GGCGATTTGCTTGACAGGTAT 58.983 47.619 0.00 0.00 45.43 2.73
883 896 3.202906 GGCGATTTGCTTGACAGGTATA 58.797 45.455 0.00 0.00 45.43 1.47
912 928 4.865365 GTGTGTTTCCCTATCTCTTCTTCG 59.135 45.833 0.00 0.00 0.00 3.79
952 968 6.509418 TTTTTAAGCCATTTGATCGCTACT 57.491 33.333 0.00 0.00 31.12 2.57
984 1003 3.748048 TCGTTACACTACTGTAAGCTCGT 59.252 43.478 0.00 0.00 42.40 4.18
985 1004 4.929211 TCGTTACACTACTGTAAGCTCGTA 59.071 41.667 0.00 0.00 42.40 3.43
986 1005 5.408299 TCGTTACACTACTGTAAGCTCGTAA 59.592 40.000 0.00 0.00 42.40 3.18
1004 1023 7.657761 AGCTCGTAATAAGAGAACAAATATGGG 59.342 37.037 7.39 0.00 37.93 4.00
1007 1026 8.479689 TCGTAATAAGAGAACAAATATGGGTCA 58.520 33.333 0.00 0.00 0.00 4.02
1211 1230 2.203337 TGCCACCCAGACAACTGC 60.203 61.111 0.00 0.00 42.25 4.40
1212 1231 2.985847 GCCACCCAGACAACTGCC 60.986 66.667 0.00 0.00 42.25 4.85
1248 1267 3.539604 GTGCAACTGCCTCAAGATCTAT 58.460 45.455 0.00 0.00 41.18 1.98
2057 2292 2.922758 CCGTATCGGTGCTTCATAGCTC 60.923 54.545 0.00 0.00 42.41 4.09
2059 2294 6.804812 CCGTATCGGTGCTTCATAGCTCAA 62.805 50.000 0.00 0.00 42.41 3.02
2068 2303 2.627515 TCATAGCTCAAGATGGCCAC 57.372 50.000 8.16 1.58 0.00 5.01
2174 2409 2.262915 GTCGACTGCTCCAGGGTG 59.737 66.667 8.70 0.00 35.51 4.61
2205 2440 0.904649 AGAATGCAGATCACCCGTGA 59.095 50.000 0.00 0.00 44.59 4.35
2290 2526 9.416794 ACATGTCTATATCGAATAAAAGCTGAG 57.583 33.333 0.00 0.00 0.00 3.35
2291 2527 8.867935 CATGTCTATATCGAATAAAAGCTGAGG 58.132 37.037 0.00 0.00 0.00 3.86
2292 2528 8.178313 TGTCTATATCGAATAAAAGCTGAGGA 57.822 34.615 0.00 0.00 0.00 3.71
2293 2529 8.082852 TGTCTATATCGAATAAAAGCTGAGGAC 58.917 37.037 0.00 0.00 0.00 3.85
2294 2530 7.271653 GTCTATATCGAATAAAAGCTGAGGACG 59.728 40.741 0.00 0.00 0.00 4.79
2295 2531 3.587797 TCGAATAAAAGCTGAGGACGT 57.412 42.857 0.00 0.00 0.00 4.34
2296 2532 3.250744 TCGAATAAAAGCTGAGGACGTG 58.749 45.455 0.00 0.00 0.00 4.49
2297 2533 2.348666 CGAATAAAAGCTGAGGACGTGG 59.651 50.000 0.00 0.00 0.00 4.94
2298 2534 2.403252 ATAAAAGCTGAGGACGTGGG 57.597 50.000 0.00 0.00 0.00 4.61
2299 2535 0.321298 TAAAAGCTGAGGACGTGGGC 60.321 55.000 0.00 0.00 0.00 5.36
2300 2536 2.337879 AAAAGCTGAGGACGTGGGCA 62.338 55.000 0.00 0.00 0.00 5.36
2301 2537 2.129555 AAAGCTGAGGACGTGGGCAT 62.130 55.000 0.00 0.00 0.00 4.40
2302 2538 1.264749 AAGCTGAGGACGTGGGCATA 61.265 55.000 0.00 0.00 0.00 3.14
2303 2539 1.227380 GCTGAGGACGTGGGCATAG 60.227 63.158 0.00 0.00 0.00 2.23
2304 2540 1.227380 CTGAGGACGTGGGCATAGC 60.227 63.158 0.00 0.00 0.00 2.97
2314 2550 3.924507 GGCATAGCCCAGTGGTTG 58.075 61.111 8.74 1.51 44.06 3.77
2315 2551 1.754234 GGCATAGCCCAGTGGTTGG 60.754 63.158 8.74 0.00 44.06 3.77
2326 2562 4.059304 TGGTTGGGGGCGCATGAT 62.059 61.111 10.83 0.00 0.00 2.45
2327 2563 2.759560 GGTTGGGGGCGCATGATT 60.760 61.111 10.83 0.00 0.00 2.57
2328 2564 2.495866 GTTGGGGGCGCATGATTG 59.504 61.111 10.83 0.00 0.00 2.67
2329 2565 2.037049 TTGGGGGCGCATGATTGT 59.963 55.556 10.83 0.00 0.00 2.71
2330 2566 1.034838 GTTGGGGGCGCATGATTGTA 61.035 55.000 10.83 0.00 0.00 2.41
2331 2567 0.323816 TTGGGGGCGCATGATTGTAA 60.324 50.000 10.83 0.00 0.00 2.41
2332 2568 0.323816 TGGGGGCGCATGATTGTAAA 60.324 50.000 10.83 0.00 0.00 2.01
2333 2569 0.102300 GGGGGCGCATGATTGTAAAC 59.898 55.000 10.83 0.00 0.00 2.01
2334 2570 0.102300 GGGGCGCATGATTGTAAACC 59.898 55.000 10.83 0.00 0.00 3.27
2335 2571 1.102978 GGGCGCATGATTGTAAACCT 58.897 50.000 10.83 0.00 0.00 3.50
2336 2572 2.294074 GGGCGCATGATTGTAAACCTA 58.706 47.619 10.83 0.00 0.00 3.08
2337 2573 2.685897 GGGCGCATGATTGTAAACCTAA 59.314 45.455 10.83 0.00 0.00 2.69
2338 2574 3.488553 GGGCGCATGATTGTAAACCTAAC 60.489 47.826 10.83 0.00 0.00 2.34
2339 2575 3.350912 GCGCATGATTGTAAACCTAACG 58.649 45.455 0.30 0.00 0.00 3.18
2340 2576 3.062909 GCGCATGATTGTAAACCTAACGA 59.937 43.478 0.30 0.00 0.00 3.85
2341 2577 4.574759 CGCATGATTGTAAACCTAACGAC 58.425 43.478 0.00 0.00 0.00 4.34
2342 2578 4.493545 CGCATGATTGTAAACCTAACGACC 60.494 45.833 0.00 0.00 0.00 4.79
2343 2579 4.393680 GCATGATTGTAAACCTAACGACCA 59.606 41.667 0.00 0.00 0.00 4.02
2344 2580 5.447279 GCATGATTGTAAACCTAACGACCAG 60.447 44.000 0.00 0.00 0.00 4.00
2345 2581 5.471556 TGATTGTAAACCTAACGACCAGA 57.528 39.130 0.00 0.00 0.00 3.86
2346 2582 5.475719 TGATTGTAAACCTAACGACCAGAG 58.524 41.667 0.00 0.00 0.00 3.35
2347 2583 4.942761 TTGTAAACCTAACGACCAGAGT 57.057 40.909 0.00 0.00 0.00 3.24
2348 2584 4.942761 TGTAAACCTAACGACCAGAGTT 57.057 40.909 0.00 0.00 35.75 3.01
2349 2585 4.874970 TGTAAACCTAACGACCAGAGTTC 58.125 43.478 0.00 0.00 33.42 3.01
2350 2586 2.719426 AACCTAACGACCAGAGTTCG 57.281 50.000 0.00 0.00 33.42 3.95
2351 2587 1.901591 ACCTAACGACCAGAGTTCGA 58.098 50.000 0.00 0.00 33.42 3.71
2352 2588 2.444421 ACCTAACGACCAGAGTTCGAT 58.556 47.619 0.00 0.00 33.42 3.59
2353 2589 2.422832 ACCTAACGACCAGAGTTCGATC 59.577 50.000 0.00 0.00 33.42 3.69
2354 2590 2.223525 CCTAACGACCAGAGTTCGATCC 60.224 54.545 0.00 0.00 33.42 3.36
2355 2591 1.254026 AACGACCAGAGTTCGATCCA 58.746 50.000 0.00 0.00 0.00 3.41
2356 2592 0.526662 ACGACCAGAGTTCGATCCAC 59.473 55.000 0.00 0.00 0.00 4.02
2357 2593 0.526211 CGACCAGAGTTCGATCCACA 59.474 55.000 0.00 0.00 0.00 4.17
2358 2594 1.135139 CGACCAGAGTTCGATCCACAT 59.865 52.381 0.00 0.00 0.00 3.21
2359 2595 2.796383 CGACCAGAGTTCGATCCACATC 60.796 54.545 0.00 0.00 0.00 3.06
2380 2616 3.685836 GGGGACGAATTTCATAAACCG 57.314 47.619 0.00 0.00 0.00 4.44
2381 2617 3.011818 GGGGACGAATTTCATAAACCGT 58.988 45.455 0.00 0.00 36.28 4.83
2382 2618 3.181504 GGGGACGAATTTCATAAACCGTG 60.182 47.826 0.00 0.00 34.59 4.94
2383 2619 3.181504 GGGACGAATTTCATAAACCGTGG 60.182 47.826 0.00 0.00 34.59 4.94
2384 2620 3.181504 GGACGAATTTCATAAACCGTGGG 60.182 47.826 0.00 0.00 34.59 4.61
2385 2621 3.414269 ACGAATTTCATAAACCGTGGGT 58.586 40.909 0.00 0.00 37.65 4.51
2386 2622 3.189702 ACGAATTTCATAAACCGTGGGTG 59.810 43.478 0.00 0.00 35.34 4.61
2387 2623 3.507786 GAATTTCATAAACCGTGGGTGC 58.492 45.455 0.00 0.00 35.34 5.01
2388 2624 2.279935 TTTCATAAACCGTGGGTGCT 57.720 45.000 0.00 0.00 35.34 4.40
2389 2625 3.420300 TTTCATAAACCGTGGGTGCTA 57.580 42.857 0.00 0.00 35.34 3.49
2390 2626 2.684001 TCATAAACCGTGGGTGCTAG 57.316 50.000 0.00 0.00 35.34 3.42
2391 2627 1.903860 TCATAAACCGTGGGTGCTAGT 59.096 47.619 0.00 0.00 35.34 2.57
2392 2628 2.006888 CATAAACCGTGGGTGCTAGTG 58.993 52.381 0.00 0.00 35.34 2.74
2393 2629 0.320946 TAAACCGTGGGTGCTAGTGC 60.321 55.000 0.00 0.00 35.34 4.40
2394 2630 3.546714 AACCGTGGGTGCTAGTGCC 62.547 63.158 0.00 0.00 35.34 5.01
2395 2631 4.778143 CCGTGGGTGCTAGTGCCC 62.778 72.222 14.48 14.48 45.04 5.36
2396 2632 3.706373 CGTGGGTGCTAGTGCCCT 61.706 66.667 19.75 0.00 45.06 5.19
2397 2633 2.757077 GTGGGTGCTAGTGCCCTT 59.243 61.111 19.75 0.00 45.06 3.95
2398 2634 1.675641 GTGGGTGCTAGTGCCCTTG 60.676 63.158 19.75 0.00 45.06 3.61
2399 2635 2.044946 GGGTGCTAGTGCCCTTGG 60.045 66.667 14.18 0.00 41.63 3.61
2400 2636 2.602676 GGGTGCTAGTGCCCTTGGA 61.603 63.158 14.18 0.00 41.63 3.53
2401 2637 1.078143 GGTGCTAGTGCCCTTGGAG 60.078 63.158 0.00 0.00 38.71 3.86
2402 2638 1.679898 GTGCTAGTGCCCTTGGAGT 59.320 57.895 0.00 0.00 38.71 3.85
2403 2639 0.036875 GTGCTAGTGCCCTTGGAGTT 59.963 55.000 0.00 0.00 38.71 3.01
2404 2640 0.771127 TGCTAGTGCCCTTGGAGTTT 59.229 50.000 0.00 0.00 38.71 2.66
2405 2641 1.271379 TGCTAGTGCCCTTGGAGTTTC 60.271 52.381 0.00 0.00 38.71 2.78
2406 2642 1.271379 GCTAGTGCCCTTGGAGTTTCA 60.271 52.381 0.00 0.00 0.00 2.69
2407 2643 2.619074 GCTAGTGCCCTTGGAGTTTCAT 60.619 50.000 0.00 0.00 0.00 2.57
2408 2644 2.683211 AGTGCCCTTGGAGTTTCATT 57.317 45.000 0.00 0.00 0.00 2.57
2409 2645 2.962859 AGTGCCCTTGGAGTTTCATTT 58.037 42.857 0.00 0.00 0.00 2.32
2410 2646 3.308401 AGTGCCCTTGGAGTTTCATTTT 58.692 40.909 0.00 0.00 0.00 1.82
2411 2647 3.711190 AGTGCCCTTGGAGTTTCATTTTT 59.289 39.130 0.00 0.00 0.00 1.94
2461 2697 1.732941 TGCATGATGGGTTGTACGAC 58.267 50.000 4.50 4.50 0.00 4.34
2466 2705 1.336148 TGATGGGTTGTACGACGTGTC 60.336 52.381 11.56 4.43 0.00 3.67
2533 2772 1.215647 GACGGCCACGACTGAATCT 59.784 57.895 2.24 0.00 44.60 2.40
2540 2779 3.309954 GGCCACGACTGAATCTATGTTTC 59.690 47.826 0.00 0.00 0.00 2.78
2671 2924 5.988310 TCGTTCTCCACTAAGGACATTAA 57.012 39.130 0.00 0.00 43.07 1.40
2682 2935 7.552687 CCACTAAGGACATTAAAGCATCTACAA 59.447 37.037 0.00 0.00 41.22 2.41
2704 2958 0.609131 AGCCAGGGACACCAAATTCG 60.609 55.000 0.00 0.00 40.13 3.34
2705 2959 1.595093 GCCAGGGACACCAAATTCGG 61.595 60.000 0.00 0.00 40.13 4.30
2706 2960 1.595093 CCAGGGACACCAAATTCGGC 61.595 60.000 0.00 0.00 40.13 5.54
2707 2961 0.609131 CAGGGACACCAAATTCGGCT 60.609 55.000 0.00 0.00 40.13 5.52
2708 2962 0.322546 AGGGACACCAAATTCGGCTC 60.323 55.000 0.00 0.00 40.13 4.70
2709 2963 1.313091 GGGACACCAAATTCGGCTCC 61.313 60.000 0.00 0.00 36.50 4.70
2710 2964 0.608035 GGACACCAAATTCGGCTCCA 60.608 55.000 0.00 0.00 0.00 3.86
2711 2965 0.804989 GACACCAAATTCGGCTCCAG 59.195 55.000 0.00 0.00 0.00 3.86
2712 2966 0.400213 ACACCAAATTCGGCTCCAGA 59.600 50.000 0.00 0.00 0.00 3.86
2713 2967 1.202879 ACACCAAATTCGGCTCCAGAA 60.203 47.619 0.00 0.00 0.00 3.02
2714 2968 1.885887 CACCAAATTCGGCTCCAGAAA 59.114 47.619 0.00 0.00 0.00 2.52
2715 2969 1.886542 ACCAAATTCGGCTCCAGAAAC 59.113 47.619 0.00 0.00 0.00 2.78
2716 2970 1.135689 CCAAATTCGGCTCCAGAAACG 60.136 52.381 0.00 0.00 0.00 3.60
2717 2971 1.535462 CAAATTCGGCTCCAGAAACGT 59.465 47.619 0.00 0.00 0.00 3.99
2718 2972 1.439679 AATTCGGCTCCAGAAACGTC 58.560 50.000 0.00 0.00 0.00 4.34
2719 2973 0.391263 ATTCGGCTCCAGAAACGTCC 60.391 55.000 0.00 0.00 0.00 4.79
2720 2974 2.758770 TTCGGCTCCAGAAACGTCCG 62.759 60.000 1.94 1.94 38.34 4.79
2721 2975 3.119096 GGCTCCAGAAACGTCCGC 61.119 66.667 0.00 0.00 0.00 5.54
2722 2976 3.479269 GCTCCAGAAACGTCCGCG 61.479 66.667 0.00 0.00 44.93 6.46
2723 2977 2.809601 CTCCAGAAACGTCCGCGG 60.810 66.667 22.12 22.12 43.45 6.46
2724 2978 3.277211 CTCCAGAAACGTCCGCGGA 62.277 63.158 27.28 27.28 43.45 5.54
2725 2979 3.110178 CCAGAAACGTCCGCGGAC 61.110 66.667 41.75 41.75 43.45 4.79
2726 2980 2.355363 CAGAAACGTCCGCGGACA 60.355 61.111 46.26 20.87 44.77 4.02
2727 2981 1.736645 CAGAAACGTCCGCGGACAT 60.737 57.895 46.26 37.04 44.77 3.06
2728 2982 1.736645 AGAAACGTCCGCGGACATG 60.737 57.895 46.26 36.01 44.77 3.21
2729 2983 1.735198 GAAACGTCCGCGGACATGA 60.735 57.895 46.26 19.26 44.77 3.07
2730 2984 1.079405 AAACGTCCGCGGACATGAT 60.079 52.632 46.26 30.77 44.77 2.45
2731 2985 1.082117 AAACGTCCGCGGACATGATC 61.082 55.000 46.26 26.56 44.77 2.92
2732 2986 2.104132 CGTCCGCGGACATGATCA 59.896 61.111 46.26 16.89 44.77 2.92
2733 2987 1.946156 CGTCCGCGGACATGATCAG 60.946 63.158 46.26 29.91 44.77 2.90
2734 2988 1.437573 GTCCGCGGACATGATCAGA 59.562 57.895 44.88 12.82 44.02 3.27
2735 2989 0.872021 GTCCGCGGACATGATCAGAC 60.872 60.000 44.88 20.72 44.02 3.51
2736 2990 1.946156 CCGCGGACATGATCAGACG 60.946 63.158 24.07 4.25 0.00 4.18
2737 2991 2.580470 CGCGGACATGATCAGACGC 61.580 63.158 19.59 19.59 43.15 5.19
2738 2992 2.580470 GCGGACATGATCAGACGCG 61.580 63.158 16.46 3.53 37.60 6.01
2739 2993 1.226688 CGGACATGATCAGACGCGT 60.227 57.895 13.85 13.85 0.00 6.01
2740 2994 1.202973 CGGACATGATCAGACGCGTC 61.203 60.000 31.30 31.30 0.00 5.19
2741 2995 0.872021 GGACATGATCAGACGCGTCC 60.872 60.000 34.08 19.80 36.46 4.79
2742 2996 0.179137 GACATGATCAGACGCGTCCA 60.179 55.000 34.08 24.64 0.00 4.02
2743 2997 0.458543 ACATGATCAGACGCGTCCAC 60.459 55.000 34.08 22.04 0.00 4.02
2744 2998 0.458370 CATGATCAGACGCGTCCACA 60.458 55.000 34.08 26.25 0.00 4.17
2745 2999 0.179127 ATGATCAGACGCGTCCACAG 60.179 55.000 34.08 21.44 0.00 3.66
2746 3000 1.517257 GATCAGACGCGTCCACAGG 60.517 63.158 34.08 18.76 0.00 4.00
2747 3001 2.214181 GATCAGACGCGTCCACAGGT 62.214 60.000 34.08 18.71 0.00 4.00
2748 3002 0.963856 ATCAGACGCGTCCACAGGTA 60.964 55.000 34.08 13.09 0.00 3.08
2749 3003 1.154016 CAGACGCGTCCACAGGTAG 60.154 63.158 34.08 11.20 0.00 3.18
2750 3004 1.602888 AGACGCGTCCACAGGTAGT 60.603 57.895 34.08 10.90 0.00 2.73
2751 3005 0.321919 AGACGCGTCCACAGGTAGTA 60.322 55.000 34.08 0.00 0.00 1.82
2752 3006 0.523072 GACGCGTCCACAGGTAGTAA 59.477 55.000 28.61 0.00 0.00 2.24
2753 3007 0.242017 ACGCGTCCACAGGTAGTAAC 59.758 55.000 5.58 0.00 0.00 2.50
2771 3025 9.508642 GGTAGTAACCGGTTATACTATTAGAGT 57.491 37.037 28.85 10.72 37.07 3.24
2774 3028 9.413734 AGTAACCGGTTATACTATTAGAGTTGT 57.586 33.333 28.85 0.00 39.81 3.32
2775 3029 9.455847 GTAACCGGTTATACTATTAGAGTTGTG 57.544 37.037 28.85 0.00 39.81 3.33
2776 3030 7.651027 ACCGGTTATACTATTAGAGTTGTGT 57.349 36.000 0.00 0.00 39.81 3.72
2777 3031 7.710896 ACCGGTTATACTATTAGAGTTGTGTC 58.289 38.462 0.00 0.00 39.81 3.67
2778 3032 7.340232 ACCGGTTATACTATTAGAGTTGTGTCA 59.660 37.037 0.00 0.00 39.81 3.58
2779 3033 8.192774 CCGGTTATACTATTAGAGTTGTGTCAA 58.807 37.037 0.00 0.00 39.81 3.18
2780 3034 9.577110 CGGTTATACTATTAGAGTTGTGTCAAA 57.423 33.333 0.00 0.00 39.81 2.69
2811 3065 9.772973 ATTGTACAAATAGAATTATAGTCGGCA 57.227 29.630 13.23 0.00 0.00 5.69
2812 3066 8.812147 TGTACAAATAGAATTATAGTCGGCAG 57.188 34.615 0.00 0.00 0.00 4.85
2813 3067 8.418662 TGTACAAATAGAATTATAGTCGGCAGT 58.581 33.333 0.00 0.00 0.00 4.40
2814 3068 7.715265 ACAAATAGAATTATAGTCGGCAGTG 57.285 36.000 0.00 0.00 0.00 3.66
2815 3069 6.706270 ACAAATAGAATTATAGTCGGCAGTGG 59.294 38.462 0.00 0.00 0.00 4.00
2816 3070 3.113260 AGAATTATAGTCGGCAGTGGC 57.887 47.619 6.62 6.62 40.13 5.01
2831 3085 3.133437 TGGCGGACCCAAAAATTCA 57.867 47.368 0.00 0.00 41.82 2.57
2832 3086 1.414158 TGGCGGACCCAAAAATTCAA 58.586 45.000 0.00 0.00 41.82 2.69
2833 3087 1.342819 TGGCGGACCCAAAAATTCAAG 59.657 47.619 0.00 0.00 41.82 3.02
2834 3088 1.343142 GGCGGACCCAAAAATTCAAGT 59.657 47.619 0.00 0.00 0.00 3.16
2835 3089 2.224185 GGCGGACCCAAAAATTCAAGTT 60.224 45.455 0.00 0.00 0.00 2.66
2836 3090 3.006003 GGCGGACCCAAAAATTCAAGTTA 59.994 43.478 0.00 0.00 0.00 2.24
2837 3091 4.234574 GCGGACCCAAAAATTCAAGTTAG 58.765 43.478 0.00 0.00 0.00 2.34
2838 3092 4.234574 CGGACCCAAAAATTCAAGTTAGC 58.765 43.478 0.00 0.00 0.00 3.09
2839 3093 4.566004 GGACCCAAAAATTCAAGTTAGCC 58.434 43.478 0.00 0.00 0.00 3.93
2840 3094 4.234574 GACCCAAAAATTCAAGTTAGCCG 58.765 43.478 0.00 0.00 0.00 5.52
2841 3095 3.006430 ACCCAAAAATTCAAGTTAGCCGG 59.994 43.478 0.00 0.00 0.00 6.13
2842 3096 3.584834 CCAAAAATTCAAGTTAGCCGGG 58.415 45.455 2.18 0.00 0.00 5.73
2843 3097 3.584834 CAAAAATTCAAGTTAGCCGGGG 58.415 45.455 2.18 0.00 0.00 5.73
2844 3098 1.182667 AAATTCAAGTTAGCCGGGGC 58.817 50.000 2.18 0.18 42.33 5.80
2854 3108 4.114997 GCCGGGGCGAACATGTTG 62.115 66.667 17.58 9.56 0.00 3.33
2855 3109 3.439540 CCGGGGCGAACATGTTGG 61.440 66.667 17.58 16.43 0.00 3.77
2856 3110 3.439540 CGGGGCGAACATGTTGGG 61.440 66.667 17.58 8.82 0.00 4.12
2857 3111 2.034999 GGGGCGAACATGTTGGGA 59.965 61.111 17.58 0.00 0.00 4.37
2858 3112 2.340328 GGGGCGAACATGTTGGGAC 61.340 63.158 17.58 9.71 0.00 4.46
2859 3113 1.602323 GGGCGAACATGTTGGGACA 60.602 57.895 17.58 0.00 40.71 4.02
2874 3128 4.478206 TGGGACAAAACAAATTGAAGCA 57.522 36.364 0.00 0.00 31.92 3.91
2875 3129 4.187694 TGGGACAAAACAAATTGAAGCAC 58.812 39.130 0.00 0.00 31.92 4.40
2876 3130 4.187694 GGGACAAAACAAATTGAAGCACA 58.812 39.130 0.00 0.00 34.38 4.57
2877 3131 4.633565 GGGACAAAACAAATTGAAGCACAA 59.366 37.500 0.00 0.00 42.95 3.33
2878 3132 5.123027 GGGACAAAACAAATTGAAGCACAAA 59.877 36.000 0.00 0.00 42.03 2.83
2879 3133 6.183360 GGGACAAAACAAATTGAAGCACAAAT 60.183 34.615 0.00 0.00 42.03 2.32
2880 3134 6.687958 GGACAAAACAAATTGAAGCACAAATG 59.312 34.615 0.00 6.05 42.03 2.32
2881 3135 6.028987 ACAAAACAAATTGAAGCACAAATGC 58.971 32.000 0.00 0.00 42.03 3.56
2882 3136 6.028368 CAAAACAAATTGAAGCACAAATGCA 58.972 32.000 0.00 0.00 42.57 3.96
2883 3137 6.527023 CAAAACAAATTGAAGCACAAATGCAA 59.473 30.769 0.00 0.00 42.57 4.08
2884 3138 7.253486 CAAAACAAATTGAAGCACAAATGCAAG 60.253 33.333 0.00 0.00 42.57 4.01
2895 3149 5.527511 CACAAATGCAAGTGTTTTCAACA 57.472 34.783 3.02 0.00 39.52 3.33
2920 3174 3.874392 AAATGGCCTTGAAAGATTCGG 57.126 42.857 3.32 0.00 0.00 4.30
2921 3175 2.514458 ATGGCCTTGAAAGATTCGGT 57.486 45.000 3.32 0.00 0.00 4.69
2922 3176 2.286365 TGGCCTTGAAAGATTCGGTT 57.714 45.000 3.32 0.00 0.00 4.44
2923 3177 2.593026 TGGCCTTGAAAGATTCGGTTT 58.407 42.857 3.32 0.00 0.00 3.27
2924 3178 2.556622 TGGCCTTGAAAGATTCGGTTTC 59.443 45.455 3.32 0.00 34.95 2.78
2925 3179 2.556622 GGCCTTGAAAGATTCGGTTTCA 59.443 45.455 0.00 0.00 41.16 2.69
2926 3180 3.005367 GGCCTTGAAAGATTCGGTTTCAA 59.995 43.478 9.86 9.86 46.62 2.69
2932 3186 7.695480 TTGAAAGATTCGGTTTCAATATGGA 57.305 32.000 6.86 0.00 44.89 3.41
2933 3187 7.880160 TGAAAGATTCGGTTTCAATATGGAT 57.120 32.000 0.00 0.00 40.20 3.41
2934 3188 8.972458 TGAAAGATTCGGTTTCAATATGGATA 57.028 30.769 0.00 0.00 40.20 2.59
2935 3189 9.402320 TGAAAGATTCGGTTTCAATATGGATAA 57.598 29.630 0.00 0.00 40.20 1.75
2936 3190 9.884465 GAAAGATTCGGTTTCAATATGGATAAG 57.116 33.333 0.00 0.00 34.58 1.73
2937 3191 9.627123 AAAGATTCGGTTTCAATATGGATAAGA 57.373 29.630 0.00 0.00 0.00 2.10
2938 3192 9.799106 AAGATTCGGTTTCAATATGGATAAGAT 57.201 29.630 0.00 0.00 0.00 2.40
2939 3193 9.799106 AGATTCGGTTTCAATATGGATAAGATT 57.201 29.630 0.00 0.00 0.00 2.40
2941 3195 8.972458 TTCGGTTTCAATATGGATAAGATTCA 57.028 30.769 0.00 0.00 0.00 2.57
2942 3196 8.972458 TCGGTTTCAATATGGATAAGATTCAA 57.028 30.769 0.00 0.00 0.00 2.69
2943 3197 9.573166 TCGGTTTCAATATGGATAAGATTCAAT 57.427 29.630 0.00 0.00 0.00 2.57
2947 3201 9.985730 TTTCAATATGGATAAGATTCAATTGGC 57.014 29.630 5.42 0.00 0.00 4.52
2948 3202 8.125978 TCAATATGGATAAGATTCAATTGGCC 57.874 34.615 5.42 0.00 0.00 5.36
2949 3203 7.178983 TCAATATGGATAAGATTCAATTGGCCC 59.821 37.037 5.42 0.00 0.00 5.80
2950 3204 3.575805 TGGATAAGATTCAATTGGCCCC 58.424 45.455 5.42 0.00 0.00 5.80
2951 3205 2.558359 GGATAAGATTCAATTGGCCCCG 59.442 50.000 5.42 0.00 0.00 5.73
2952 3206 2.818751 TAAGATTCAATTGGCCCCGT 57.181 45.000 5.42 0.00 0.00 5.28
2953 3207 1.937191 AAGATTCAATTGGCCCCGTT 58.063 45.000 5.42 0.00 0.00 4.44
2954 3208 1.937191 AGATTCAATTGGCCCCGTTT 58.063 45.000 5.42 0.00 0.00 3.60
2955 3209 1.550072 AGATTCAATTGGCCCCGTTTG 59.450 47.619 5.42 0.00 0.00 2.93
2956 3210 1.548269 GATTCAATTGGCCCCGTTTGA 59.452 47.619 5.42 1.17 0.00 2.69
2957 3211 1.638529 TTCAATTGGCCCCGTTTGAT 58.361 45.000 5.42 0.00 0.00 2.57
2958 3212 2.516227 TCAATTGGCCCCGTTTGATA 57.484 45.000 5.42 0.00 0.00 2.15
2959 3213 2.374184 TCAATTGGCCCCGTTTGATAG 58.626 47.619 5.42 0.00 0.00 2.08
2960 3214 1.111277 AATTGGCCCCGTTTGATAGC 58.889 50.000 0.00 0.00 0.00 2.97
2961 3215 0.258774 ATTGGCCCCGTTTGATAGCT 59.741 50.000 0.00 0.00 0.00 3.32
2962 3216 0.393808 TTGGCCCCGTTTGATAGCTC 60.394 55.000 0.00 0.00 0.00 4.09
2963 3217 1.223487 GGCCCCGTTTGATAGCTCA 59.777 57.895 0.00 0.00 0.00 4.26
2964 3218 0.815615 GGCCCCGTTTGATAGCTCAG 60.816 60.000 0.00 0.00 31.68 3.35
2965 3219 0.107654 GCCCCGTTTGATAGCTCAGT 60.108 55.000 0.00 0.00 31.68 3.41
2966 3220 1.679032 GCCCCGTTTGATAGCTCAGTT 60.679 52.381 0.00 0.00 31.68 3.16
2967 3221 2.711542 CCCCGTTTGATAGCTCAGTTT 58.288 47.619 0.00 0.00 31.68 2.66
2968 3222 3.081804 CCCCGTTTGATAGCTCAGTTTT 58.918 45.455 0.00 0.00 31.68 2.43
2969 3223 3.506067 CCCCGTTTGATAGCTCAGTTTTT 59.494 43.478 0.00 0.00 31.68 1.94
2970 3224 4.379499 CCCCGTTTGATAGCTCAGTTTTTC 60.379 45.833 0.00 0.00 31.68 2.29
2971 3225 4.455877 CCCGTTTGATAGCTCAGTTTTTCT 59.544 41.667 0.00 0.00 31.68 2.52
2972 3226 5.642063 CCCGTTTGATAGCTCAGTTTTTCTA 59.358 40.000 0.00 0.00 31.68 2.10
2973 3227 6.148811 CCCGTTTGATAGCTCAGTTTTTCTAA 59.851 38.462 0.00 0.00 31.68 2.10
2974 3228 7.237173 CCGTTTGATAGCTCAGTTTTTCTAAG 58.763 38.462 0.00 0.00 31.68 2.18
2975 3229 7.095187 CCGTTTGATAGCTCAGTTTTTCTAAGT 60.095 37.037 0.00 0.00 31.68 2.24
2976 3230 8.922676 CGTTTGATAGCTCAGTTTTTCTAAGTA 58.077 33.333 0.00 0.00 31.68 2.24
3007 3261 8.045176 AGAATACTGCAGTTTTTGAGATTACC 57.955 34.615 27.06 7.95 0.00 2.85
3008 3262 7.665559 AGAATACTGCAGTTTTTGAGATTACCA 59.334 33.333 27.06 1.00 0.00 3.25
3009 3263 7.944729 ATACTGCAGTTTTTGAGATTACCAT 57.055 32.000 27.06 3.75 0.00 3.55
3010 3264 6.017400 ACTGCAGTTTTTGAGATTACCATG 57.983 37.500 15.25 0.00 0.00 3.66
3011 3265 5.047802 ACTGCAGTTTTTGAGATTACCATGG 60.048 40.000 15.25 11.19 0.00 3.66
3012 3266 4.832266 TGCAGTTTTTGAGATTACCATGGT 59.168 37.500 23.55 23.55 0.00 3.55
3013 3267 5.304101 TGCAGTTTTTGAGATTACCATGGTT 59.696 36.000 25.38 5.54 0.00 3.67
3014 3268 6.183360 TGCAGTTTTTGAGATTACCATGGTTT 60.183 34.615 25.38 11.51 0.00 3.27
3015 3269 6.705825 GCAGTTTTTGAGATTACCATGGTTTT 59.294 34.615 25.38 11.10 0.00 2.43
3016 3270 7.870445 GCAGTTTTTGAGATTACCATGGTTTTA 59.130 33.333 25.38 9.65 0.00 1.52
3017 3271 9.927668 CAGTTTTTGAGATTACCATGGTTTTAT 57.072 29.630 25.38 14.25 0.00 1.40
3030 3284 4.974368 TGGTTTTATTAACCATGAGCCG 57.026 40.909 5.31 0.00 44.74 5.52
3031 3285 4.337145 TGGTTTTATTAACCATGAGCCGT 58.663 39.130 5.31 0.00 44.74 5.68
3032 3286 4.767928 TGGTTTTATTAACCATGAGCCGTT 59.232 37.500 5.31 0.00 44.74 4.44
3033 3287 5.244178 TGGTTTTATTAACCATGAGCCGTTT 59.756 36.000 5.31 0.00 44.74 3.60
3034 3288 5.575218 GGTTTTATTAACCATGAGCCGTTTG 59.425 40.000 0.00 0.00 40.03 2.93
3035 3289 5.968528 TTTATTAACCATGAGCCGTTTGT 57.031 34.783 0.00 0.00 0.00 2.83
3036 3290 5.554822 TTATTAACCATGAGCCGTTTGTC 57.445 39.130 0.00 0.00 0.00 3.18
3037 3291 2.851263 TAACCATGAGCCGTTTGTCT 57.149 45.000 0.00 0.00 0.00 3.41
3038 3292 2.851263 AACCATGAGCCGTTTGTCTA 57.149 45.000 0.00 0.00 0.00 2.59
3039 3293 3.350219 AACCATGAGCCGTTTGTCTAT 57.650 42.857 0.00 0.00 0.00 1.98
3040 3294 2.906354 ACCATGAGCCGTTTGTCTATC 58.094 47.619 0.00 0.00 0.00 2.08
3041 3295 2.236146 ACCATGAGCCGTTTGTCTATCA 59.764 45.455 0.00 0.00 0.00 2.15
3042 3296 2.609459 CCATGAGCCGTTTGTCTATCAC 59.391 50.000 0.00 0.00 0.00 3.06
3043 3297 3.525537 CATGAGCCGTTTGTCTATCACT 58.474 45.455 0.00 0.00 0.00 3.41
3044 3298 4.441495 CCATGAGCCGTTTGTCTATCACTA 60.441 45.833 0.00 0.00 0.00 2.74
3045 3299 4.794278 TGAGCCGTTTGTCTATCACTAA 57.206 40.909 0.00 0.00 0.00 2.24
3046 3300 5.142061 TGAGCCGTTTGTCTATCACTAAA 57.858 39.130 0.00 0.00 0.00 1.85
3047 3301 5.543714 TGAGCCGTTTGTCTATCACTAAAA 58.456 37.500 0.00 0.00 0.00 1.52
3048 3302 5.992829 TGAGCCGTTTGTCTATCACTAAAAA 59.007 36.000 0.00 0.00 0.00 1.94
3049 3303 6.653320 TGAGCCGTTTGTCTATCACTAAAAAT 59.347 34.615 0.00 0.00 0.00 1.82
3050 3304 7.174253 TGAGCCGTTTGTCTATCACTAAAAATT 59.826 33.333 0.00 0.00 0.00 1.82
3051 3305 7.305474 AGCCGTTTGTCTATCACTAAAAATTG 58.695 34.615 0.00 0.00 0.00 2.32
3052 3306 7.040686 AGCCGTTTGTCTATCACTAAAAATTGT 60.041 33.333 0.00 0.00 0.00 2.71
3053 3307 7.060633 GCCGTTTGTCTATCACTAAAAATTGTG 59.939 37.037 0.00 0.00 35.68 3.33
3054 3308 7.537306 CCGTTTGTCTATCACTAAAAATTGTGG 59.463 37.037 0.00 0.00 35.15 4.17
3055 3309 8.073768 CGTTTGTCTATCACTAAAAATTGTGGT 58.926 33.333 0.00 0.00 35.15 4.16
3056 3310 9.744468 GTTTGTCTATCACTAAAAATTGTGGTT 57.256 29.630 0.00 0.00 35.15 3.67
3074 3328 9.883142 ATTGTGGTTTTAATATTGTGGTATTGG 57.117 29.630 0.00 0.00 0.00 3.16
3075 3329 7.324178 TGTGGTTTTAATATTGTGGTATTGGC 58.676 34.615 0.00 0.00 0.00 4.52
3076 3330 7.039011 TGTGGTTTTAATATTGTGGTATTGGCA 60.039 33.333 0.00 0.00 0.00 4.92
3077 3331 7.819900 GTGGTTTTAATATTGTGGTATTGGCAA 59.180 33.333 0.68 0.68 0.00 4.52
3078 3332 8.375506 TGGTTTTAATATTGTGGTATTGGCAAA 58.624 29.630 3.01 0.00 0.00 3.68
3079 3333 9.220767 GGTTTTAATATTGTGGTATTGGCAAAA 57.779 29.630 3.01 0.00 0.00 2.44
3081 3335 8.779354 TTTAATATTGTGGTATTGGCAAAACC 57.221 30.769 3.01 0.00 39.84 3.27
3094 3348 5.559148 TGGCAAAACCATGGTATTTTCTT 57.441 34.783 20.12 4.37 46.36 2.52
3095 3349 5.934781 TGGCAAAACCATGGTATTTTCTTT 58.065 33.333 20.12 11.04 46.36 2.52
3096 3350 5.762218 TGGCAAAACCATGGTATTTTCTTTG 59.238 36.000 24.01 24.01 46.36 2.77
3097 3351 5.762711 GGCAAAACCATGGTATTTTCTTTGT 59.237 36.000 26.64 6.06 38.86 2.83
3098 3352 6.931840 GGCAAAACCATGGTATTTTCTTTGTA 59.068 34.615 26.64 0.00 38.86 2.41
3099 3353 7.606073 GGCAAAACCATGGTATTTTCTTTGTAT 59.394 33.333 26.64 5.43 38.86 2.29
3100 3354 8.998377 GCAAAACCATGGTATTTTCTTTGTATT 58.002 29.630 26.64 10.39 0.00 1.89
3123 3377 3.549898 AAAAAGAATCCTGGCCCTCTT 57.450 42.857 0.00 0.00 0.00 2.85
3124 3378 3.549898 AAAAGAATCCTGGCCCTCTTT 57.450 42.857 0.00 4.24 39.27 2.52
3125 3379 3.549898 AAAGAATCCTGGCCCTCTTTT 57.450 42.857 0.00 0.00 35.15 2.27
3126 3380 3.549898 AAGAATCCTGGCCCTCTTTTT 57.450 42.857 0.00 0.00 0.00 1.94
3146 3400 5.517322 TTTTTAAAACCGAGCTAGCCAAA 57.483 34.783 12.13 0.00 0.00 3.28
3147 3401 5.517322 TTTTAAAACCGAGCTAGCCAAAA 57.483 34.783 12.13 3.08 0.00 2.44
3148 3402 5.517322 TTTAAAACCGAGCTAGCCAAAAA 57.483 34.783 12.13 0.00 0.00 1.94
3149 3403 3.643159 AAAACCGAGCTAGCCAAAAAG 57.357 42.857 12.13 0.00 0.00 2.27
3150 3404 2.561478 AACCGAGCTAGCCAAAAAGA 57.439 45.000 12.13 0.00 0.00 2.52
3151 3405 2.561478 ACCGAGCTAGCCAAAAAGAA 57.439 45.000 12.13 0.00 0.00 2.52
3152 3406 2.858745 ACCGAGCTAGCCAAAAAGAAA 58.141 42.857 12.13 0.00 0.00 2.52
3153 3407 2.552743 ACCGAGCTAGCCAAAAAGAAAC 59.447 45.455 12.13 0.00 0.00 2.78
3154 3408 2.552315 CCGAGCTAGCCAAAAAGAAACA 59.448 45.455 12.13 0.00 0.00 2.83
3155 3409 3.555518 CGAGCTAGCCAAAAAGAAACAC 58.444 45.455 12.13 0.00 0.00 3.32
3156 3410 3.609409 CGAGCTAGCCAAAAAGAAACACC 60.609 47.826 12.13 0.00 0.00 4.16
3157 3411 3.566351 AGCTAGCCAAAAAGAAACACCT 58.434 40.909 12.13 0.00 0.00 4.00
3158 3412 3.570125 AGCTAGCCAAAAAGAAACACCTC 59.430 43.478 12.13 0.00 0.00 3.85
3159 3413 3.317993 GCTAGCCAAAAAGAAACACCTCA 59.682 43.478 2.29 0.00 0.00 3.86
3160 3414 3.801114 AGCCAAAAAGAAACACCTCAC 57.199 42.857 0.00 0.00 0.00 3.51
3161 3415 3.096092 AGCCAAAAAGAAACACCTCACA 58.904 40.909 0.00 0.00 0.00 3.58
3162 3416 3.706086 AGCCAAAAAGAAACACCTCACAT 59.294 39.130 0.00 0.00 0.00 3.21
3163 3417 4.162131 AGCCAAAAAGAAACACCTCACATT 59.838 37.500 0.00 0.00 0.00 2.71
3164 3418 5.362430 AGCCAAAAAGAAACACCTCACATTA 59.638 36.000 0.00 0.00 0.00 1.90
3165 3419 6.041979 AGCCAAAAAGAAACACCTCACATTAT 59.958 34.615 0.00 0.00 0.00 1.28
3166 3420 6.366061 GCCAAAAAGAAACACCTCACATTATC 59.634 38.462 0.00 0.00 0.00 1.75
3167 3421 7.661040 CCAAAAAGAAACACCTCACATTATCT 58.339 34.615 0.00 0.00 0.00 1.98
3168 3422 8.143835 CCAAAAAGAAACACCTCACATTATCTT 58.856 33.333 0.00 0.00 0.00 2.40
3169 3423 9.185192 CAAAAAGAAACACCTCACATTATCTTC 57.815 33.333 0.00 0.00 0.00 2.87
3170 3424 8.697507 AAAAGAAACACCTCACATTATCTTCT 57.302 30.769 0.00 0.00 0.00 2.85
3171 3425 7.913674 AAGAAACACCTCACATTATCTTCTC 57.086 36.000 0.00 0.00 0.00 2.87
3172 3426 6.102663 AGAAACACCTCACATTATCTTCTCG 58.897 40.000 0.00 0.00 0.00 4.04
3173 3427 5.407407 AACACCTCACATTATCTTCTCGT 57.593 39.130 0.00 0.00 0.00 4.18
3174 3428 5.000012 ACACCTCACATTATCTTCTCGTC 58.000 43.478 0.00 0.00 0.00 4.20
3175 3429 4.462834 ACACCTCACATTATCTTCTCGTCA 59.537 41.667 0.00 0.00 0.00 4.35
3176 3430 5.047306 ACACCTCACATTATCTTCTCGTCAA 60.047 40.000 0.00 0.00 0.00 3.18
3177 3431 5.518128 CACCTCACATTATCTTCTCGTCAAG 59.482 44.000 0.00 0.00 0.00 3.02
3178 3432 4.505922 CCTCACATTATCTTCTCGTCAAGC 59.494 45.833 0.00 0.00 0.00 4.01
3179 3433 5.330455 TCACATTATCTTCTCGTCAAGCT 57.670 39.130 0.00 0.00 0.00 3.74
3180 3434 5.105063 TCACATTATCTTCTCGTCAAGCTG 58.895 41.667 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 150 3.087253 ATTGGATCCGCCGTGGGA 61.087 61.111 7.39 0.00 40.66 4.37
153 154 4.235762 CCCGATTGGATCCGCCGT 62.236 66.667 7.39 0.00 40.66 5.68
249 250 3.599704 GCGGCCCTGAATGGATGC 61.600 66.667 0.00 0.00 38.35 3.91
277 279 0.676782 GTGGCCGAAGCACCATAAGT 60.677 55.000 0.00 0.00 42.56 2.24
373 375 3.032609 GGATGCGGCGTGATCTCG 61.033 66.667 12.66 12.66 0.00 4.04
455 458 4.742649 TCTCGCGCCTCCCTCTGT 62.743 66.667 0.00 0.00 0.00 3.41
544 553 2.283529 ACTGCGAACCGATCTGGGT 61.284 57.895 8.20 1.58 44.44 4.51
545 554 1.811266 CACTGCGAACCGATCTGGG 60.811 63.158 8.20 0.00 44.64 4.45
546 555 1.811266 CCACTGCGAACCGATCTGG 60.811 63.158 2.55 2.55 46.41 3.86
547 556 2.456119 GCCACTGCGAACCGATCTG 61.456 63.158 0.00 0.00 0.00 2.90
548 557 2.125512 GCCACTGCGAACCGATCT 60.126 61.111 0.00 0.00 0.00 2.75
549 558 1.573829 TTTGCCACTGCGAACCGATC 61.574 55.000 0.00 0.00 41.78 3.69
550 559 1.599518 TTTGCCACTGCGAACCGAT 60.600 52.632 0.00 0.00 41.78 4.18
551 560 2.203084 TTTGCCACTGCGAACCGA 60.203 55.556 0.00 0.00 41.78 4.69
555 564 2.712539 CACGTTTGCCACTGCGAA 59.287 55.556 0.00 0.00 41.78 4.70
556 565 3.276091 CCACGTTTGCCACTGCGA 61.276 61.111 0.00 0.00 41.78 5.10
557 566 3.276091 TCCACGTTTGCCACTGCG 61.276 61.111 0.00 0.00 41.78 5.18
558 567 1.724582 AAGTCCACGTTTGCCACTGC 61.725 55.000 0.00 0.00 38.26 4.40
559 568 0.738389 AAAGTCCACGTTTGCCACTG 59.262 50.000 0.00 0.00 0.00 3.66
560 569 1.944709 GTAAAGTCCACGTTTGCCACT 59.055 47.619 0.00 0.00 0.00 4.00
561 570 1.944709 AGTAAAGTCCACGTTTGCCAC 59.055 47.619 0.00 0.00 0.00 5.01
562 571 2.335316 AGTAAAGTCCACGTTTGCCA 57.665 45.000 0.00 0.00 0.00 4.92
563 572 2.876550 AGAAGTAAAGTCCACGTTTGCC 59.123 45.455 0.00 0.00 0.00 4.52
564 573 3.558418 TGAGAAGTAAAGTCCACGTTTGC 59.442 43.478 0.00 0.00 0.00 3.68
565 574 4.025145 GGTGAGAAGTAAAGTCCACGTTTG 60.025 45.833 0.00 0.00 0.00 2.93
566 575 4.124970 GGTGAGAAGTAAAGTCCACGTTT 58.875 43.478 0.00 0.00 0.00 3.60
567 576 3.387050 AGGTGAGAAGTAAAGTCCACGTT 59.613 43.478 0.00 0.00 0.00 3.99
568 577 2.963782 AGGTGAGAAGTAAAGTCCACGT 59.036 45.455 0.00 0.00 0.00 4.49
569 578 3.662247 AGGTGAGAAGTAAAGTCCACG 57.338 47.619 0.00 0.00 0.00 4.94
570 579 4.483311 CGTAGGTGAGAAGTAAAGTCCAC 58.517 47.826 0.00 0.00 0.00 4.02
571 580 4.778534 CGTAGGTGAGAAGTAAAGTCCA 57.221 45.455 0.00 0.00 0.00 4.02
649 658 6.623979 TTACACCACCTGCTATTAAGGTTA 57.376 37.500 0.00 0.00 46.14 2.85
652 661 4.821805 CCATTACACCACCTGCTATTAAGG 59.178 45.833 0.00 0.00 40.93 2.69
656 665 3.010138 ACACCATTACACCACCTGCTATT 59.990 43.478 0.00 0.00 0.00 1.73
870 883 4.627467 CACACTGAAGTATACCTGTCAAGC 59.373 45.833 0.00 0.00 0.00 4.01
878 891 5.161943 AGGGAAACACACTGAAGTATACC 57.838 43.478 0.00 0.00 0.00 2.73
879 892 7.783042 AGATAGGGAAACACACTGAAGTATAC 58.217 38.462 0.00 0.00 32.74 1.47
880 893 7.839705 AGAGATAGGGAAACACACTGAAGTATA 59.160 37.037 0.00 0.00 32.74 1.47
881 894 6.670027 AGAGATAGGGAAACACACTGAAGTAT 59.330 38.462 0.00 0.00 32.74 2.12
882 895 6.017192 AGAGATAGGGAAACACACTGAAGTA 58.983 40.000 0.00 0.00 32.74 2.24
883 896 4.841246 AGAGATAGGGAAACACACTGAAGT 59.159 41.667 0.00 0.00 32.74 3.01
912 928 2.231716 AAATAGGCCAGGTTTCCCAC 57.768 50.000 5.01 0.00 0.00 4.61
929 945 6.509418 AGTAGCGATCAAATGGCTTAAAAA 57.491 33.333 1.77 0.00 41.83 1.94
930 946 6.037830 GGTAGTAGCGATCAAATGGCTTAAAA 59.962 38.462 1.77 0.00 41.83 1.52
952 968 0.599558 AGTGTAACGAAGCAGCGGTA 59.400 50.000 0.00 0.00 45.86 4.02
984 1003 7.225931 GCGTGACCCATATTTGTTCTCTTATTA 59.774 37.037 0.00 0.00 0.00 0.98
985 1004 6.038271 GCGTGACCCATATTTGTTCTCTTATT 59.962 38.462 0.00 0.00 0.00 1.40
986 1005 5.527582 GCGTGACCCATATTTGTTCTCTTAT 59.472 40.000 0.00 0.00 0.00 1.73
1020 1039 1.667830 AGCGACCACCACGATGTTG 60.668 57.895 0.00 0.00 0.00 3.33
1569 1675 1.081641 GCAGTTCTTCCGACGACGA 60.082 57.895 9.28 0.00 42.66 4.20
2174 2409 2.102757 TCTGCATTCTCCAGATCAGCTC 59.897 50.000 0.00 0.00 34.59 4.09
2205 2440 0.597637 CGATCGAGCTAAATGCCGGT 60.598 55.000 10.26 0.00 44.23 5.28
2266 2502 8.807118 TCCTCAGCTTTTATTCGATATAGACAT 58.193 33.333 0.00 0.00 0.00 3.06
2277 2513 2.678336 CCCACGTCCTCAGCTTTTATTC 59.322 50.000 0.00 0.00 0.00 1.75
2278 2514 2.711542 CCCACGTCCTCAGCTTTTATT 58.288 47.619 0.00 0.00 0.00 1.40
2279 2515 1.679032 GCCCACGTCCTCAGCTTTTAT 60.679 52.381 0.00 0.00 0.00 1.40
2280 2516 0.321298 GCCCACGTCCTCAGCTTTTA 60.321 55.000 0.00 0.00 0.00 1.52
2281 2517 1.600916 GCCCACGTCCTCAGCTTTT 60.601 57.895 0.00 0.00 0.00 2.27
2282 2518 2.032681 GCCCACGTCCTCAGCTTT 59.967 61.111 0.00 0.00 0.00 3.51
2283 2519 1.264749 TATGCCCACGTCCTCAGCTT 61.265 55.000 0.00 0.00 0.00 3.74
2284 2520 1.680522 CTATGCCCACGTCCTCAGCT 61.681 60.000 0.00 0.00 0.00 4.24
2285 2521 1.227380 CTATGCCCACGTCCTCAGC 60.227 63.158 0.00 0.00 0.00 4.26
2286 2522 1.227380 GCTATGCCCACGTCCTCAG 60.227 63.158 0.00 0.00 0.00 3.35
2287 2523 2.731571 GGCTATGCCCACGTCCTCA 61.732 63.158 0.00 0.00 44.06 3.86
2288 2524 2.109181 GGCTATGCCCACGTCCTC 59.891 66.667 0.00 0.00 44.06 3.71
2298 2534 3.924507 CCAACCACTGGGCTATGC 58.075 61.111 0.00 0.00 42.17 3.14
2309 2545 3.598747 AATCATGCGCCCCCAACCA 62.599 57.895 4.18 0.00 0.00 3.67
2310 2546 2.759560 AATCATGCGCCCCCAACC 60.760 61.111 4.18 0.00 0.00 3.77
2311 2547 1.034838 TACAATCATGCGCCCCCAAC 61.035 55.000 4.18 0.00 0.00 3.77
2312 2548 0.323816 TTACAATCATGCGCCCCCAA 60.324 50.000 4.18 0.00 0.00 4.12
2313 2549 0.323816 TTTACAATCATGCGCCCCCA 60.324 50.000 4.18 0.00 0.00 4.96
2314 2550 0.102300 GTTTACAATCATGCGCCCCC 59.898 55.000 4.18 0.00 0.00 5.40
2315 2551 0.102300 GGTTTACAATCATGCGCCCC 59.898 55.000 4.18 0.00 0.00 5.80
2316 2552 1.102978 AGGTTTACAATCATGCGCCC 58.897 50.000 4.18 0.00 0.00 6.13
2317 2553 3.691498 GTTAGGTTTACAATCATGCGCC 58.309 45.455 4.18 0.00 0.00 6.53
2318 2554 3.062909 TCGTTAGGTTTACAATCATGCGC 59.937 43.478 0.00 0.00 0.00 6.09
2319 2555 4.493545 GGTCGTTAGGTTTACAATCATGCG 60.494 45.833 0.00 0.00 0.00 4.73
2320 2556 4.393680 TGGTCGTTAGGTTTACAATCATGC 59.606 41.667 0.00 0.00 0.00 4.06
2321 2557 5.872617 TCTGGTCGTTAGGTTTACAATCATG 59.127 40.000 0.00 0.00 0.00 3.07
2322 2558 6.045072 TCTGGTCGTTAGGTTTACAATCAT 57.955 37.500 0.00 0.00 0.00 2.45
2323 2559 5.011329 ACTCTGGTCGTTAGGTTTACAATCA 59.989 40.000 0.00 0.00 0.00 2.57
2324 2560 5.476614 ACTCTGGTCGTTAGGTTTACAATC 58.523 41.667 0.00 0.00 0.00 2.67
2325 2561 5.479124 ACTCTGGTCGTTAGGTTTACAAT 57.521 39.130 0.00 0.00 0.00 2.71
2326 2562 4.942761 ACTCTGGTCGTTAGGTTTACAA 57.057 40.909 0.00 0.00 0.00 2.41
2327 2563 4.557296 CGAACTCTGGTCGTTAGGTTTACA 60.557 45.833 0.00 0.00 0.00 2.41
2328 2564 3.916776 CGAACTCTGGTCGTTAGGTTTAC 59.083 47.826 0.00 0.00 0.00 2.01
2329 2565 3.820467 TCGAACTCTGGTCGTTAGGTTTA 59.180 43.478 4.93 0.00 0.00 2.01
2330 2566 2.624838 TCGAACTCTGGTCGTTAGGTTT 59.375 45.455 4.93 0.00 0.00 3.27
2331 2567 2.233271 TCGAACTCTGGTCGTTAGGTT 58.767 47.619 4.93 0.00 0.00 3.50
2332 2568 1.901591 TCGAACTCTGGTCGTTAGGT 58.098 50.000 4.93 0.00 0.00 3.08
2333 2569 2.223525 GGATCGAACTCTGGTCGTTAGG 60.224 54.545 4.93 0.00 0.00 2.69
2334 2570 2.422479 TGGATCGAACTCTGGTCGTTAG 59.578 50.000 4.93 0.00 0.00 2.34
2335 2571 2.163010 GTGGATCGAACTCTGGTCGTTA 59.837 50.000 4.93 0.00 0.00 3.18
2336 2572 1.067776 GTGGATCGAACTCTGGTCGTT 60.068 52.381 4.93 0.00 0.00 3.85
2337 2573 0.526662 GTGGATCGAACTCTGGTCGT 59.473 55.000 4.93 0.00 0.00 4.34
2338 2574 0.526211 TGTGGATCGAACTCTGGTCG 59.474 55.000 0.00 0.00 0.00 4.79
2339 2575 2.815478 GATGTGGATCGAACTCTGGTC 58.185 52.381 0.00 0.00 0.00 4.02
2340 2576 2.969628 GATGTGGATCGAACTCTGGT 57.030 50.000 0.00 0.00 0.00 4.00
2350 2586 0.393077 ATTCGTCCCCGATGTGGATC 59.607 55.000 0.00 0.00 43.80 3.36
2351 2587 0.837272 AATTCGTCCCCGATGTGGAT 59.163 50.000 0.00 0.00 43.80 3.41
2352 2588 0.616371 AAATTCGTCCCCGATGTGGA 59.384 50.000 0.00 0.00 43.80 4.02
2353 2589 1.014352 GAAATTCGTCCCCGATGTGG 58.986 55.000 0.00 0.00 43.80 4.17
2354 2590 1.732941 TGAAATTCGTCCCCGATGTG 58.267 50.000 0.00 0.00 43.80 3.21
2355 2591 2.710096 ATGAAATTCGTCCCCGATGT 57.290 45.000 0.00 0.00 43.80 3.06
2356 2592 4.261031 GGTTTATGAAATTCGTCCCCGATG 60.261 45.833 0.00 0.00 43.80 3.84
2357 2593 3.881089 GGTTTATGAAATTCGTCCCCGAT 59.119 43.478 0.00 0.00 43.80 4.18
2358 2594 3.272581 GGTTTATGAAATTCGTCCCCGA 58.727 45.455 0.00 0.00 42.41 5.14
2359 2595 2.031191 CGGTTTATGAAATTCGTCCCCG 59.969 50.000 0.00 0.00 0.00 5.73
2360 2596 3.011818 ACGGTTTATGAAATTCGTCCCC 58.988 45.455 0.00 0.00 31.14 4.81
2361 2597 3.181504 CCACGGTTTATGAAATTCGTCCC 60.182 47.826 0.00 0.00 33.30 4.46
2362 2598 3.181504 CCCACGGTTTATGAAATTCGTCC 60.182 47.826 0.00 0.00 33.30 4.79
2363 2599 3.437741 ACCCACGGTTTATGAAATTCGTC 59.562 43.478 0.00 0.00 33.30 4.20
2364 2600 3.189702 CACCCACGGTTTATGAAATTCGT 59.810 43.478 0.00 0.00 31.02 3.85
2365 2601 3.753842 CACCCACGGTTTATGAAATTCG 58.246 45.455 0.00 0.00 31.02 3.34
2366 2602 3.192633 AGCACCCACGGTTTATGAAATTC 59.807 43.478 0.00 0.00 31.02 2.17
2367 2603 3.161866 AGCACCCACGGTTTATGAAATT 58.838 40.909 0.00 0.00 31.02 1.82
2368 2604 2.802719 AGCACCCACGGTTTATGAAAT 58.197 42.857 0.00 0.00 31.02 2.17
2369 2605 2.279935 AGCACCCACGGTTTATGAAA 57.720 45.000 0.00 0.00 31.02 2.69
2370 2606 2.303600 ACTAGCACCCACGGTTTATGAA 59.696 45.455 0.00 0.00 31.02 2.57
2371 2607 1.903860 ACTAGCACCCACGGTTTATGA 59.096 47.619 0.00 0.00 31.02 2.15
2372 2608 2.006888 CACTAGCACCCACGGTTTATG 58.993 52.381 0.00 0.00 31.02 1.90
2373 2609 1.677820 GCACTAGCACCCACGGTTTAT 60.678 52.381 0.00 0.00 41.58 1.40
2374 2610 0.320946 GCACTAGCACCCACGGTTTA 60.321 55.000 0.00 0.00 41.58 2.01
2375 2611 1.599797 GCACTAGCACCCACGGTTT 60.600 57.895 0.00 0.00 41.58 3.27
2376 2612 2.032071 GCACTAGCACCCACGGTT 59.968 61.111 0.00 0.00 41.58 4.44
2377 2613 4.016706 GGCACTAGCACCCACGGT 62.017 66.667 0.00 0.00 44.61 4.83
2378 2614 4.778143 GGGCACTAGCACCCACGG 62.778 72.222 14.48 0.00 46.22 4.94
2385 2621 0.771127 AAACTCCAAGGGCACTAGCA 59.229 50.000 0.00 0.00 44.61 3.49
2386 2622 1.271379 TGAAACTCCAAGGGCACTAGC 60.271 52.381 0.00 0.00 41.10 3.42
2387 2623 2.859165 TGAAACTCCAAGGGCACTAG 57.141 50.000 0.00 0.00 0.00 2.57
2388 2624 3.806949 AATGAAACTCCAAGGGCACTA 57.193 42.857 0.00 0.00 0.00 2.74
2389 2625 2.683211 AATGAAACTCCAAGGGCACT 57.317 45.000 0.00 0.00 0.00 4.40
2390 2626 3.751479 AAAATGAAACTCCAAGGGCAC 57.249 42.857 0.00 0.00 0.00 5.01
2412 2648 9.403583 AGACCCAAGCTTTTATTCGATATAAAA 57.596 29.630 17.08 17.08 33.83 1.52
2413 2649 8.974060 AGACCCAAGCTTTTATTCGATATAAA 57.026 30.769 0.00 8.01 0.00 1.40
2414 2650 7.660208 GGAGACCCAAGCTTTTATTCGATATAA 59.340 37.037 0.00 0.00 0.00 0.98
2415 2651 7.159372 GGAGACCCAAGCTTTTATTCGATATA 58.841 38.462 0.00 0.00 0.00 0.86
2416 2652 5.998363 GGAGACCCAAGCTTTTATTCGATAT 59.002 40.000 0.00 0.00 0.00 1.63
2417 2653 5.104693 TGGAGACCCAAGCTTTTATTCGATA 60.105 40.000 0.00 0.00 40.09 2.92
2418 2654 4.200092 GGAGACCCAAGCTTTTATTCGAT 58.800 43.478 0.00 0.00 0.00 3.59
2419 2655 3.008594 TGGAGACCCAAGCTTTTATTCGA 59.991 43.478 0.00 0.00 40.09 3.71
2420 2656 3.343617 TGGAGACCCAAGCTTTTATTCG 58.656 45.455 0.00 0.00 40.09 3.34
2533 2772 2.147958 GCACACACGGAAGGAAACATA 58.852 47.619 0.00 0.00 0.00 2.29
2540 2779 0.532862 ACTCTTGCACACACGGAAGG 60.533 55.000 0.00 0.00 35.25 3.46
2671 2924 2.422519 CCCTGGCTGATTGTAGATGCTT 60.423 50.000 0.00 0.00 0.00 3.91
2682 2935 0.706433 ATTTGGTGTCCCTGGCTGAT 59.294 50.000 0.00 0.00 0.00 2.90
2704 2958 3.119096 GCGGACGTTTCTGGAGCC 61.119 66.667 0.00 0.00 0.00 4.70
2705 2959 3.479269 CGCGGACGTTTCTGGAGC 61.479 66.667 0.00 0.00 33.53 4.70
2706 2960 2.809601 CCGCGGACGTTTCTGGAG 60.810 66.667 24.07 0.00 37.70 3.86
2707 2961 3.296836 TCCGCGGACGTTTCTGGA 61.297 61.111 27.28 0.00 37.70 3.86
2708 2962 3.110178 GTCCGCGGACGTTTCTGG 61.110 66.667 39.77 3.67 37.70 3.86
2716 2970 0.872021 GTCTGATCATGTCCGCGGAC 60.872 60.000 43.88 43.88 44.77 4.79
2717 2971 1.437573 GTCTGATCATGTCCGCGGA 59.562 57.895 27.28 27.28 0.00 5.54
2718 2972 1.946156 CGTCTGATCATGTCCGCGG 60.946 63.158 22.12 22.12 0.00 6.46
2719 2973 2.580470 GCGTCTGATCATGTCCGCG 61.580 63.158 0.00 0.00 0.00 6.46
2720 2974 2.580470 CGCGTCTGATCATGTCCGC 61.580 63.158 14.61 14.61 37.91 5.54
2721 2975 1.202973 GACGCGTCTGATCATGTCCG 61.203 60.000 31.12 0.06 0.00 4.79
2722 2976 0.872021 GGACGCGTCTGATCATGTCC 60.872 60.000 35.50 14.54 39.10 4.02
2723 2977 0.179137 TGGACGCGTCTGATCATGTC 60.179 55.000 35.50 17.79 0.00 3.06
2724 2978 0.458543 GTGGACGCGTCTGATCATGT 60.459 55.000 35.50 0.00 0.00 3.21
2725 2979 0.458370 TGTGGACGCGTCTGATCATG 60.458 55.000 35.50 0.00 0.00 3.07
2726 2980 0.179127 CTGTGGACGCGTCTGATCAT 60.179 55.000 35.50 0.00 0.00 2.45
2727 2981 1.212751 CTGTGGACGCGTCTGATCA 59.787 57.895 35.50 23.27 0.00 2.92
2728 2982 1.517257 CCTGTGGACGCGTCTGATC 60.517 63.158 35.50 20.97 0.00 2.92
2729 2983 0.963856 TACCTGTGGACGCGTCTGAT 60.964 55.000 35.50 18.68 0.00 2.90
2730 2984 1.583495 CTACCTGTGGACGCGTCTGA 61.583 60.000 35.50 21.38 0.00 3.27
2731 2985 1.154016 CTACCTGTGGACGCGTCTG 60.154 63.158 35.50 22.51 0.00 3.51
2732 2986 0.321919 TACTACCTGTGGACGCGTCT 60.322 55.000 35.50 19.23 0.00 4.18
2733 2987 0.523072 TTACTACCTGTGGACGCGTC 59.477 55.000 30.67 30.67 0.00 5.19
2734 2988 0.242017 GTTACTACCTGTGGACGCGT 59.758 55.000 13.85 13.85 0.00 6.01
2735 2989 0.457337 GGTTACTACCTGTGGACGCG 60.457 60.000 3.53 3.53 41.53 6.01
2736 2990 0.457337 CGGTTACTACCTGTGGACGC 60.457 60.000 0.00 0.00 42.66 5.19
2737 2991 0.171903 CCGGTTACTACCTGTGGACG 59.828 60.000 0.00 0.00 42.66 4.79
2738 2992 1.260544 ACCGGTTACTACCTGTGGAC 58.739 55.000 0.00 0.00 40.00 4.02
2739 2993 2.014010 AACCGGTTACTACCTGTGGA 57.986 50.000 20.78 0.00 40.54 4.02
2740 2994 4.646492 AGTATAACCGGTTACTACCTGTGG 59.354 45.833 28.78 0.00 40.54 4.17
2741 2995 5.841957 AGTATAACCGGTTACTACCTGTG 57.158 43.478 28.78 0.00 40.54 3.66
2742 2996 9.289782 CTAATAGTATAACCGGTTACTACCTGT 57.710 37.037 28.78 16.06 42.90 4.00
2743 2997 9.507329 TCTAATAGTATAACCGGTTACTACCTG 57.493 37.037 28.78 19.04 42.66 4.00
2744 2998 9.732130 CTCTAATAGTATAACCGGTTACTACCT 57.268 37.037 28.78 21.28 42.66 3.08
2745 2999 9.508642 ACTCTAATAGTATAACCGGTTACTACC 57.491 37.037 28.78 15.93 37.63 3.18
2748 3002 9.413734 ACAACTCTAATAGTATAACCGGTTACT 57.586 33.333 28.78 25.43 37.50 2.24
2749 3003 9.455847 CACAACTCTAATAGTATAACCGGTTAC 57.544 37.037 28.78 19.83 37.50 2.50
2750 3004 9.189156 ACACAACTCTAATAGTATAACCGGTTA 57.811 33.333 28.40 28.40 37.50 2.85
2751 3005 8.071177 ACACAACTCTAATAGTATAACCGGTT 57.929 34.615 25.64 25.64 37.50 4.44
2752 3006 7.340232 TGACACAACTCTAATAGTATAACCGGT 59.660 37.037 0.00 0.00 37.50 5.28
2753 3007 7.709947 TGACACAACTCTAATAGTATAACCGG 58.290 38.462 0.00 0.00 37.50 5.28
2754 3008 9.577110 TTTGACACAACTCTAATAGTATAACCG 57.423 33.333 0.00 0.00 37.50 4.44
2785 3039 9.772973 TGCCGACTATAATTCTATTTGTACAAT 57.227 29.630 9.56 2.67 0.00 2.71
2786 3040 9.256477 CTGCCGACTATAATTCTATTTGTACAA 57.744 33.333 3.59 3.59 0.00 2.41
2787 3041 8.418662 ACTGCCGACTATAATTCTATTTGTACA 58.581 33.333 0.00 0.00 0.00 2.90
2788 3042 8.700644 CACTGCCGACTATAATTCTATTTGTAC 58.299 37.037 0.00 0.00 0.00 2.90
2789 3043 7.870954 CCACTGCCGACTATAATTCTATTTGTA 59.129 37.037 0.00 0.00 0.00 2.41
2790 3044 6.706270 CCACTGCCGACTATAATTCTATTTGT 59.294 38.462 0.00 0.00 0.00 2.83
2791 3045 6.347725 GCCACTGCCGACTATAATTCTATTTG 60.348 42.308 0.00 0.00 0.00 2.32
2792 3046 5.701290 GCCACTGCCGACTATAATTCTATTT 59.299 40.000 0.00 0.00 0.00 1.40
2793 3047 5.238583 GCCACTGCCGACTATAATTCTATT 58.761 41.667 0.00 0.00 0.00 1.73
2794 3048 4.618460 CGCCACTGCCGACTATAATTCTAT 60.618 45.833 0.00 0.00 0.00 1.98
2795 3049 3.305131 CGCCACTGCCGACTATAATTCTA 60.305 47.826 0.00 0.00 0.00 2.10
2796 3050 2.545952 CGCCACTGCCGACTATAATTCT 60.546 50.000 0.00 0.00 0.00 2.40
2797 3051 1.792949 CGCCACTGCCGACTATAATTC 59.207 52.381 0.00 0.00 0.00 2.17
2798 3052 1.540363 CCGCCACTGCCGACTATAATT 60.540 52.381 0.00 0.00 0.00 1.40
2799 3053 0.033504 CCGCCACTGCCGACTATAAT 59.966 55.000 0.00 0.00 0.00 1.28
2800 3054 1.038681 TCCGCCACTGCCGACTATAA 61.039 55.000 0.00 0.00 0.00 0.98
2801 3055 1.454295 TCCGCCACTGCCGACTATA 60.454 57.895 0.00 0.00 0.00 1.31
2802 3056 2.758327 TCCGCCACTGCCGACTAT 60.758 61.111 0.00 0.00 0.00 2.12
2803 3057 3.755628 GTCCGCCACTGCCGACTA 61.756 66.667 0.00 0.00 40.95 2.59
2808 3062 4.966787 TTTGGGTCCGCCACTGCC 62.967 66.667 0.00 0.00 36.17 4.85
2809 3063 1.815817 ATTTTTGGGTCCGCCACTGC 61.816 55.000 0.00 0.00 36.17 4.40
2810 3064 0.678950 AATTTTTGGGTCCGCCACTG 59.321 50.000 0.00 0.00 36.17 3.66
2811 3065 0.966179 GAATTTTTGGGTCCGCCACT 59.034 50.000 0.00 0.00 36.17 4.00
2812 3066 0.676736 TGAATTTTTGGGTCCGCCAC 59.323 50.000 0.00 0.00 36.17 5.01
2813 3067 1.342819 CTTGAATTTTTGGGTCCGCCA 59.657 47.619 0.00 0.00 36.17 5.69
2814 3068 1.343142 ACTTGAATTTTTGGGTCCGCC 59.657 47.619 0.00 0.00 0.00 6.13
2815 3069 2.812358 ACTTGAATTTTTGGGTCCGC 57.188 45.000 0.00 0.00 0.00 5.54
2816 3070 4.234574 GCTAACTTGAATTTTTGGGTCCG 58.765 43.478 0.00 0.00 0.00 4.79
2817 3071 4.566004 GGCTAACTTGAATTTTTGGGTCC 58.434 43.478 0.00 0.00 0.00 4.46
2818 3072 4.234574 CGGCTAACTTGAATTTTTGGGTC 58.765 43.478 0.00 0.00 0.00 4.46
2819 3073 3.006430 CCGGCTAACTTGAATTTTTGGGT 59.994 43.478 0.00 0.00 0.00 4.51
2820 3074 3.584834 CCGGCTAACTTGAATTTTTGGG 58.415 45.455 0.00 0.00 0.00 4.12
2821 3075 3.584834 CCCGGCTAACTTGAATTTTTGG 58.415 45.455 0.00 0.00 0.00 3.28
2822 3076 3.584834 CCCCGGCTAACTTGAATTTTTG 58.415 45.455 0.00 0.00 0.00 2.44
2823 3077 2.028476 GCCCCGGCTAACTTGAATTTTT 60.028 45.455 0.00 0.00 38.26 1.94
2824 3078 1.548719 GCCCCGGCTAACTTGAATTTT 59.451 47.619 0.00 0.00 38.26 1.82
2825 3079 1.182667 GCCCCGGCTAACTTGAATTT 58.817 50.000 0.00 0.00 38.26 1.82
2826 3080 1.029947 CGCCCCGGCTAACTTGAATT 61.030 55.000 3.84 0.00 39.32 2.17
2827 3081 1.451387 CGCCCCGGCTAACTTGAAT 60.451 57.895 3.84 0.00 39.32 2.57
2828 3082 2.046700 CGCCCCGGCTAACTTGAA 60.047 61.111 3.84 0.00 39.32 2.69
2829 3083 2.585341 TTCGCCCCGGCTAACTTGA 61.585 57.895 3.84 0.00 39.32 3.02
2830 3084 2.046700 TTCGCCCCGGCTAACTTG 60.047 61.111 3.84 0.00 39.32 3.16
2831 3085 2.046604 GTTCGCCCCGGCTAACTT 60.047 61.111 14.16 0.00 41.59 2.66
2832 3086 2.666098 ATGTTCGCCCCGGCTAACT 61.666 57.895 20.05 6.88 44.01 2.24
2833 3087 2.124860 ATGTTCGCCCCGGCTAAC 60.125 61.111 14.47 14.47 43.96 2.34
2834 3088 2.124901 CATGTTCGCCCCGGCTAA 60.125 61.111 3.84 0.00 39.32 3.09
2835 3089 2.961893 AACATGTTCGCCCCGGCTA 61.962 57.895 4.92 0.00 39.32 3.93
2836 3090 4.344865 AACATGTTCGCCCCGGCT 62.345 61.111 4.92 0.00 39.32 5.52
2837 3091 4.114997 CAACATGTTCGCCCCGGC 62.115 66.667 8.48 0.00 37.85 6.13
2838 3092 3.439540 CCAACATGTTCGCCCCGG 61.440 66.667 8.48 1.75 0.00 5.73
2839 3093 3.439540 CCCAACATGTTCGCCCCG 61.440 66.667 8.48 0.00 0.00 5.73
2840 3094 2.034999 TCCCAACATGTTCGCCCC 59.965 61.111 8.48 0.00 0.00 5.80
2841 3095 1.175983 TTGTCCCAACATGTTCGCCC 61.176 55.000 8.48 0.00 34.73 6.13
2842 3096 0.671251 TTTGTCCCAACATGTTCGCC 59.329 50.000 8.48 0.00 34.73 5.54
2843 3097 2.124122 GTTTTGTCCCAACATGTTCGC 58.876 47.619 8.48 0.00 34.73 4.70
2844 3098 3.428746 TGTTTTGTCCCAACATGTTCG 57.571 42.857 8.48 1.37 34.73 3.95
2845 3099 6.314896 TCAATTTGTTTTGTCCCAACATGTTC 59.685 34.615 8.48 0.00 34.13 3.18
2846 3100 6.176183 TCAATTTGTTTTGTCCCAACATGTT 58.824 32.000 4.92 4.92 34.13 2.71
2847 3101 5.738909 TCAATTTGTTTTGTCCCAACATGT 58.261 33.333 0.00 0.00 34.13 3.21
2848 3102 6.674694 TTCAATTTGTTTTGTCCCAACATG 57.325 33.333 0.00 0.00 34.13 3.21
2849 3103 5.296531 GCTTCAATTTGTTTTGTCCCAACAT 59.703 36.000 0.00 0.00 34.13 2.71
2850 3104 4.633565 GCTTCAATTTGTTTTGTCCCAACA 59.366 37.500 0.00 0.00 32.16 3.33
2851 3105 4.633565 TGCTTCAATTTGTTTTGTCCCAAC 59.366 37.500 0.00 0.00 0.00 3.77
2852 3106 4.633565 GTGCTTCAATTTGTTTTGTCCCAA 59.366 37.500 0.00 0.00 0.00 4.12
2853 3107 4.187694 GTGCTTCAATTTGTTTTGTCCCA 58.812 39.130 0.00 0.00 0.00 4.37
2854 3108 4.187694 TGTGCTTCAATTTGTTTTGTCCC 58.812 39.130 0.00 0.00 0.00 4.46
2855 3109 5.793026 TTGTGCTTCAATTTGTTTTGTCC 57.207 34.783 0.00 0.00 0.00 4.02
2856 3110 6.195060 GCATTTGTGCTTCAATTTGTTTTGTC 59.805 34.615 0.00 0.00 35.84 3.18
2857 3111 6.028987 GCATTTGTGCTTCAATTTGTTTTGT 58.971 32.000 0.00 0.00 35.84 2.83
2858 3112 6.028368 TGCATTTGTGCTTCAATTTGTTTTG 58.972 32.000 1.86 0.00 35.84 2.44
2859 3113 6.192234 TGCATTTGTGCTTCAATTTGTTTT 57.808 29.167 1.86 0.00 35.84 2.43
2860 3114 5.814764 TGCATTTGTGCTTCAATTTGTTT 57.185 30.435 1.86 0.00 35.84 2.83
2861 3115 5.354792 ACTTGCATTTGTGCTTCAATTTGTT 59.645 32.000 1.86 0.00 35.84 2.83
2862 3116 4.877251 ACTTGCATTTGTGCTTCAATTTGT 59.123 33.333 1.86 0.00 35.84 2.83
2863 3117 5.201910 CACTTGCATTTGTGCTTCAATTTG 58.798 37.500 1.86 0.00 35.84 2.32
2864 3118 4.877251 ACACTTGCATTTGTGCTTCAATTT 59.123 33.333 12.82 0.00 37.68 1.82
2865 3119 4.444536 ACACTTGCATTTGTGCTTCAATT 58.555 34.783 12.82 0.00 37.68 2.32
2866 3120 4.062677 ACACTTGCATTTGTGCTTCAAT 57.937 36.364 12.82 0.00 37.68 2.57
2867 3121 3.523606 ACACTTGCATTTGTGCTTCAA 57.476 38.095 12.82 0.00 37.68 2.69
2868 3122 3.523606 AACACTTGCATTTGTGCTTCA 57.476 38.095 12.82 0.00 37.68 3.02
2869 3123 4.329528 TGAAAACACTTGCATTTGTGCTTC 59.670 37.500 12.82 14.40 37.68 3.86
2870 3124 4.252073 TGAAAACACTTGCATTTGTGCTT 58.748 34.783 12.82 6.43 37.68 3.91
2871 3125 3.859443 TGAAAACACTTGCATTTGTGCT 58.141 36.364 12.82 1.27 37.68 4.40
2872 3126 4.596801 TTGAAAACACTTGCATTTGTGC 57.403 36.364 12.82 0.00 37.68 4.57
2898 3152 4.040339 ACCGAATCTTTCAAGGCCATTTTT 59.960 37.500 5.01 0.00 0.00 1.94
2899 3153 3.578282 ACCGAATCTTTCAAGGCCATTTT 59.422 39.130 5.01 0.00 0.00 1.82
2900 3154 3.165071 ACCGAATCTTTCAAGGCCATTT 58.835 40.909 5.01 0.00 0.00 2.32
2901 3155 2.807676 ACCGAATCTTTCAAGGCCATT 58.192 42.857 5.01 0.00 0.00 3.16
2902 3156 2.514458 ACCGAATCTTTCAAGGCCAT 57.486 45.000 5.01 0.00 0.00 4.40
2903 3157 2.286365 AACCGAATCTTTCAAGGCCA 57.714 45.000 5.01 0.00 0.00 5.36
2904 3158 2.556622 TGAAACCGAATCTTTCAAGGCC 59.443 45.455 0.00 0.00 35.23 5.19
2905 3159 3.915437 TGAAACCGAATCTTTCAAGGC 57.085 42.857 0.00 0.00 35.23 4.35
2906 3160 6.974622 CCATATTGAAACCGAATCTTTCAAGG 59.025 38.462 13.35 7.73 45.93 3.61
2907 3161 7.761409 TCCATATTGAAACCGAATCTTTCAAG 58.239 34.615 13.35 3.80 45.93 3.02
2908 3162 7.695480 TCCATATTGAAACCGAATCTTTCAA 57.305 32.000 11.19 11.19 46.47 2.69
2909 3163 7.880160 ATCCATATTGAAACCGAATCTTTCA 57.120 32.000 0.00 0.00 36.14 2.69
2910 3164 9.884465 CTTATCCATATTGAAACCGAATCTTTC 57.116 33.333 0.00 0.00 0.00 2.62
2911 3165 9.627123 TCTTATCCATATTGAAACCGAATCTTT 57.373 29.630 0.00 0.00 0.00 2.52
2912 3166 9.799106 ATCTTATCCATATTGAAACCGAATCTT 57.201 29.630 0.00 0.00 0.00 2.40
2913 3167 9.799106 AATCTTATCCATATTGAAACCGAATCT 57.201 29.630 0.00 0.00 0.00 2.40
2915 3169 9.573166 TGAATCTTATCCATATTGAAACCGAAT 57.427 29.630 0.00 0.00 0.00 3.34
2916 3170 8.972458 TGAATCTTATCCATATTGAAACCGAA 57.028 30.769 0.00 0.00 0.00 4.30
2917 3171 8.972458 TTGAATCTTATCCATATTGAAACCGA 57.028 30.769 0.00 0.00 0.00 4.69
2921 3175 9.985730 GCCAATTGAATCTTATCCATATTGAAA 57.014 29.630 7.12 0.00 0.00 2.69
2922 3176 8.587608 GGCCAATTGAATCTTATCCATATTGAA 58.412 33.333 7.12 0.00 0.00 2.69
2923 3177 7.178983 GGGCCAATTGAATCTTATCCATATTGA 59.821 37.037 7.12 0.00 0.00 2.57
2924 3178 7.325694 GGGCCAATTGAATCTTATCCATATTG 58.674 38.462 7.12 0.00 0.00 1.90
2925 3179 6.441604 GGGGCCAATTGAATCTTATCCATATT 59.558 38.462 7.12 0.00 0.00 1.28
2926 3180 5.960202 GGGGCCAATTGAATCTTATCCATAT 59.040 40.000 7.12 0.00 0.00 1.78
2927 3181 5.332743 GGGGCCAATTGAATCTTATCCATA 58.667 41.667 7.12 0.00 0.00 2.74
2928 3182 4.162651 GGGGCCAATTGAATCTTATCCAT 58.837 43.478 7.12 0.00 0.00 3.41
2929 3183 3.575805 GGGGCCAATTGAATCTTATCCA 58.424 45.455 7.12 0.00 0.00 3.41
2930 3184 2.558359 CGGGGCCAATTGAATCTTATCC 59.442 50.000 7.12 0.00 0.00 2.59
2931 3185 3.222603 ACGGGGCCAATTGAATCTTATC 58.777 45.455 7.12 0.00 0.00 1.75
2932 3186 3.312736 ACGGGGCCAATTGAATCTTAT 57.687 42.857 7.12 0.00 0.00 1.73
2933 3187 2.818751 ACGGGGCCAATTGAATCTTA 57.181 45.000 7.12 0.00 0.00 2.10
2934 3188 1.937191 AACGGGGCCAATTGAATCTT 58.063 45.000 7.12 0.00 0.00 2.40
2935 3189 1.550072 CAAACGGGGCCAATTGAATCT 59.450 47.619 7.12 0.00 0.00 2.40
2936 3190 1.548269 TCAAACGGGGCCAATTGAATC 59.452 47.619 7.12 0.00 0.00 2.52
2937 3191 1.638529 TCAAACGGGGCCAATTGAAT 58.361 45.000 7.12 0.00 0.00 2.57
2938 3192 1.638529 ATCAAACGGGGCCAATTGAA 58.361 45.000 17.91 6.09 35.62 2.69
2939 3193 2.374184 CTATCAAACGGGGCCAATTGA 58.626 47.619 16.78 16.78 36.35 2.57
2940 3194 1.202405 GCTATCAAACGGGGCCAATTG 60.202 52.381 4.39 7.37 0.00 2.32
2941 3195 1.111277 GCTATCAAACGGGGCCAATT 58.889 50.000 4.39 0.00 0.00 2.32
2942 3196 0.258774 AGCTATCAAACGGGGCCAAT 59.741 50.000 4.39 0.00 0.00 3.16
2943 3197 0.393808 GAGCTATCAAACGGGGCCAA 60.394 55.000 4.39 0.00 0.00 4.52
2944 3198 1.223487 GAGCTATCAAACGGGGCCA 59.777 57.895 4.39 0.00 0.00 5.36
2945 3199 0.815615 CTGAGCTATCAAACGGGGCC 60.816 60.000 0.00 0.00 34.23 5.80
2946 3200 0.107654 ACTGAGCTATCAAACGGGGC 60.108 55.000 0.00 0.00 34.23 5.80
2947 3201 2.403252 AACTGAGCTATCAAACGGGG 57.597 50.000 0.00 0.00 34.23 5.73
2948 3202 4.455877 AGAAAAACTGAGCTATCAAACGGG 59.544 41.667 0.00 0.00 34.23 5.28
2949 3203 5.613358 AGAAAAACTGAGCTATCAAACGG 57.387 39.130 0.00 0.00 34.23 4.44
2950 3204 7.797819 ACTTAGAAAAACTGAGCTATCAAACG 58.202 34.615 0.00 0.00 35.94 3.60
2981 3235 9.162764 GGTAATCTCAAAAACTGCAGTATTCTA 57.837 33.333 22.01 5.38 0.00 2.10
2982 3236 7.665559 TGGTAATCTCAAAAACTGCAGTATTCT 59.334 33.333 22.01 0.19 0.00 2.40
2983 3237 7.816640 TGGTAATCTCAAAAACTGCAGTATTC 58.183 34.615 22.01 8.12 0.00 1.75
2984 3238 7.759489 TGGTAATCTCAAAAACTGCAGTATT 57.241 32.000 22.01 16.01 0.00 1.89
2985 3239 7.148018 CCATGGTAATCTCAAAAACTGCAGTAT 60.148 37.037 22.01 9.71 0.00 2.12
2986 3240 6.150976 CCATGGTAATCTCAAAAACTGCAGTA 59.849 38.462 22.01 2.09 0.00 2.74
2987 3241 5.047802 CCATGGTAATCTCAAAAACTGCAGT 60.048 40.000 15.25 15.25 0.00 4.40
2988 3242 5.047802 ACCATGGTAATCTCAAAAACTGCAG 60.048 40.000 18.10 13.48 0.00 4.41
2989 3243 4.832266 ACCATGGTAATCTCAAAAACTGCA 59.168 37.500 18.10 0.00 0.00 4.41
2990 3244 5.391312 ACCATGGTAATCTCAAAAACTGC 57.609 39.130 18.10 0.00 0.00 4.40
2991 3245 9.927668 ATAAAACCATGGTAATCTCAAAAACTG 57.072 29.630 20.12 0.00 0.00 3.16
2997 3251 9.535170 TGGTTAATAAAACCATGGTAATCTCAA 57.465 29.630 20.12 6.29 44.74 3.02
3010 3264 4.976224 ACGGCTCATGGTTAATAAAACC 57.024 40.909 0.00 0.00 40.67 3.27
3011 3265 6.153756 ACAAACGGCTCATGGTTAATAAAAC 58.846 36.000 0.00 0.00 0.00 2.43
3012 3266 6.207810 AGACAAACGGCTCATGGTTAATAAAA 59.792 34.615 0.00 0.00 0.00 1.52
3013 3267 5.708230 AGACAAACGGCTCATGGTTAATAAA 59.292 36.000 0.00 0.00 0.00 1.40
3014 3268 5.250200 AGACAAACGGCTCATGGTTAATAA 58.750 37.500 0.00 0.00 0.00 1.40
3015 3269 4.839121 AGACAAACGGCTCATGGTTAATA 58.161 39.130 0.00 0.00 0.00 0.98
3016 3270 3.686016 AGACAAACGGCTCATGGTTAAT 58.314 40.909 0.00 0.00 0.00 1.40
3017 3271 3.134574 AGACAAACGGCTCATGGTTAA 57.865 42.857 0.00 0.00 0.00 2.01
3018 3272 2.851263 AGACAAACGGCTCATGGTTA 57.149 45.000 0.00 0.00 0.00 2.85
3019 3273 2.851263 TAGACAAACGGCTCATGGTT 57.149 45.000 0.00 0.00 0.00 3.67
3020 3274 2.236146 TGATAGACAAACGGCTCATGGT 59.764 45.455 0.00 0.00 0.00 3.55
3021 3275 2.609459 GTGATAGACAAACGGCTCATGG 59.391 50.000 0.00 0.00 0.00 3.66
3022 3276 3.525537 AGTGATAGACAAACGGCTCATG 58.474 45.455 0.00 0.00 0.00 3.07
3023 3277 3.895232 AGTGATAGACAAACGGCTCAT 57.105 42.857 0.00 0.00 0.00 2.90
3024 3278 4.794278 TTAGTGATAGACAAACGGCTCA 57.206 40.909 0.00 0.00 0.00 4.26
3025 3279 6.476243 TTTTTAGTGATAGACAAACGGCTC 57.524 37.500 0.00 0.00 0.00 4.70
3026 3280 7.040686 ACAATTTTTAGTGATAGACAAACGGCT 60.041 33.333 0.00 0.00 0.00 5.52
3027 3281 7.060633 CACAATTTTTAGTGATAGACAAACGGC 59.939 37.037 0.00 0.00 37.97 5.68
3028 3282 7.537306 CCACAATTTTTAGTGATAGACAAACGG 59.463 37.037 0.00 0.00 37.97 4.44
3029 3283 8.073768 ACCACAATTTTTAGTGATAGACAAACG 58.926 33.333 0.00 0.00 37.97 3.60
3030 3284 9.744468 AACCACAATTTTTAGTGATAGACAAAC 57.256 29.630 0.00 0.00 37.97 2.93
3048 3302 9.883142 CCAATACCACAATATTAAAACCACAAT 57.117 29.630 0.00 0.00 0.00 2.71
3049 3303 7.819900 GCCAATACCACAATATTAAAACCACAA 59.180 33.333 0.00 0.00 0.00 3.33
3050 3304 7.039011 TGCCAATACCACAATATTAAAACCACA 60.039 33.333 0.00 0.00 0.00 4.17
3051 3305 7.324178 TGCCAATACCACAATATTAAAACCAC 58.676 34.615 0.00 0.00 0.00 4.16
3052 3306 7.482169 TGCCAATACCACAATATTAAAACCA 57.518 32.000 0.00 0.00 0.00 3.67
3053 3307 8.779354 TTTGCCAATACCACAATATTAAAACC 57.221 30.769 0.00 0.00 0.00 3.27
3055 3309 9.220767 GGTTTTGCCAATACCACAATATTAAAA 57.779 29.630 11.60 0.00 37.17 1.52
3056 3310 8.375506 TGGTTTTGCCAATACCACAATATTAAA 58.624 29.630 14.72 0.00 45.94 1.52
3057 3311 7.907389 TGGTTTTGCCAATACCACAATATTAA 58.093 30.769 14.72 0.00 45.94 1.40
3058 3312 7.482169 TGGTTTTGCCAATACCACAATATTA 57.518 32.000 14.72 0.00 45.94 0.98
3059 3313 6.365970 TGGTTTTGCCAATACCACAATATT 57.634 33.333 14.72 0.00 45.94 1.28
3073 3327 5.762711 ACAAAGAAAATACCATGGTTTTGCC 59.237 36.000 26.46 18.44 37.90 4.52
3074 3328 6.859420 ACAAAGAAAATACCATGGTTTTGC 57.141 33.333 26.46 21.58 0.00 3.68
3103 3357 3.549898 AAGAGGGCCAGGATTCTTTTT 57.450 42.857 6.18 0.00 0.00 1.94
3104 3358 3.549898 AAAGAGGGCCAGGATTCTTTT 57.450 42.857 6.18 0.00 36.72 2.27
3105 3359 3.549898 AAAAGAGGGCCAGGATTCTTT 57.450 42.857 6.18 9.17 40.53 2.52
3106 3360 3.549898 AAAAAGAGGGCCAGGATTCTT 57.450 42.857 6.18 2.18 0.00 2.52
3124 3378 5.517322 TTTGGCTAGCTCGGTTTTAAAAA 57.483 34.783 15.72 0.00 0.00 1.94
3125 3379 5.517322 TTTTGGCTAGCTCGGTTTTAAAA 57.483 34.783 15.72 0.00 0.00 1.52
3126 3380 5.299782 TCTTTTTGGCTAGCTCGGTTTTAAA 59.700 36.000 15.72 3.94 0.00 1.52
3127 3381 4.822896 TCTTTTTGGCTAGCTCGGTTTTAA 59.177 37.500 15.72 0.00 0.00 1.52
3128 3382 4.391155 TCTTTTTGGCTAGCTCGGTTTTA 58.609 39.130 15.72 0.00 0.00 1.52
3129 3383 3.219281 TCTTTTTGGCTAGCTCGGTTTT 58.781 40.909 15.72 0.00 0.00 2.43
3130 3384 2.858745 TCTTTTTGGCTAGCTCGGTTT 58.141 42.857 15.72 0.00 0.00 3.27
3131 3385 2.561478 TCTTTTTGGCTAGCTCGGTT 57.439 45.000 15.72 0.00 0.00 4.44
3132 3386 2.552743 GTTTCTTTTTGGCTAGCTCGGT 59.447 45.455 15.72 0.00 0.00 4.69
3133 3387 2.552315 TGTTTCTTTTTGGCTAGCTCGG 59.448 45.455 15.72 0.00 0.00 4.63
3134 3388 3.555518 GTGTTTCTTTTTGGCTAGCTCG 58.444 45.455 15.72 0.00 0.00 5.03
3135 3389 3.570125 AGGTGTTTCTTTTTGGCTAGCTC 59.430 43.478 15.72 5.44 0.00 4.09
3136 3390 3.566351 AGGTGTTTCTTTTTGGCTAGCT 58.434 40.909 15.72 0.00 0.00 3.32
3137 3391 3.317993 TGAGGTGTTTCTTTTTGGCTAGC 59.682 43.478 6.04 6.04 0.00 3.42
3138 3392 4.338118 TGTGAGGTGTTTCTTTTTGGCTAG 59.662 41.667 0.00 0.00 0.00 3.42
3139 3393 4.274147 TGTGAGGTGTTTCTTTTTGGCTA 58.726 39.130 0.00 0.00 0.00 3.93
3140 3394 3.096092 TGTGAGGTGTTTCTTTTTGGCT 58.904 40.909 0.00 0.00 0.00 4.75
3141 3395 3.518634 TGTGAGGTGTTTCTTTTTGGC 57.481 42.857 0.00 0.00 0.00 4.52
3142 3396 7.661040 AGATAATGTGAGGTGTTTCTTTTTGG 58.339 34.615 0.00 0.00 0.00 3.28
3143 3397 9.185192 GAAGATAATGTGAGGTGTTTCTTTTTG 57.815 33.333 0.00 0.00 0.00 2.44
3144 3398 9.136323 AGAAGATAATGTGAGGTGTTTCTTTTT 57.864 29.630 0.00 0.00 0.00 1.94
3145 3399 8.697507 AGAAGATAATGTGAGGTGTTTCTTTT 57.302 30.769 0.00 0.00 0.00 2.27
3146 3400 7.118390 CGAGAAGATAATGTGAGGTGTTTCTTT 59.882 37.037 0.00 0.00 0.00 2.52
3147 3401 6.591834 CGAGAAGATAATGTGAGGTGTTTCTT 59.408 38.462 0.00 0.00 0.00 2.52
3148 3402 6.102663 CGAGAAGATAATGTGAGGTGTTTCT 58.897 40.000 0.00 0.00 0.00 2.52
3149 3403 5.869888 ACGAGAAGATAATGTGAGGTGTTTC 59.130 40.000 0.00 0.00 0.00 2.78
3150 3404 5.794894 ACGAGAAGATAATGTGAGGTGTTT 58.205 37.500 0.00 0.00 0.00 2.83
3151 3405 5.047306 TGACGAGAAGATAATGTGAGGTGTT 60.047 40.000 0.00 0.00 0.00 3.32
3152 3406 4.462834 TGACGAGAAGATAATGTGAGGTGT 59.537 41.667 0.00 0.00 0.00 4.16
3153 3407 4.998788 TGACGAGAAGATAATGTGAGGTG 58.001 43.478 0.00 0.00 0.00 4.00
3154 3408 5.655488 CTTGACGAGAAGATAATGTGAGGT 58.345 41.667 0.00 0.00 0.00 3.85
3155 3409 4.505922 GCTTGACGAGAAGATAATGTGAGG 59.494 45.833 0.00 0.00 0.00 3.86
3156 3410 5.231779 CAGCTTGACGAGAAGATAATGTGAG 59.768 44.000 0.00 0.00 0.00 3.51
3157 3411 5.105063 CAGCTTGACGAGAAGATAATGTGA 58.895 41.667 0.00 0.00 0.00 3.58
3158 3412 5.386810 CAGCTTGACGAGAAGATAATGTG 57.613 43.478 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.