AutoCloner

Multiple sequence alignment - TraesCS4B01G120400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G120400	chr4B	100.000	3624	0	0	1	3624	141430025	141426402	0.000000e+00	6693.0
1	TraesCS4B01G120400	chr4B	94.715	246	6	2	3032	3270	73279727	73279972	3.420000e-100	375.0
2	TraesCS4B01G120400	chr4D	93.618	2930	127	24	1	2920	99163772	99160893	0.000000e+00	4320.0
3	TraesCS4B01G120400	chr4D	94.857	175	9	0	3450	3624	99160569	99160395	1.280000e-69	274.0
4	TraesCS4B01G120400	chr4D	93.370	181	11	1	3271	3451	99160830	99160651	2.150000e-67	267.0
5	TraesCS4B01G120400	chr4D	95.775	71	3	0	2961	3031	99160896	99160826	8.220000e-22	115.0
6	TraesCS4B01G120400	chr4A	94.488	2667	81	23	392	3031	476978358	476980985	0.000000e+00	4050.0
7	TraesCS4B01G120400	chr4A	91.525	354	22	7	3271	3624	476980981	476981326	7.040000e-132	481.0
8	TraesCS4B01G120400	chr4A	85.507	345	33	6	1	336	476978031	476978367	9.630000e-91	344.0
9	TraesCS4B01G120400	chr5A	81.715	1668	257	30	771	2422	325931515	325933150	0.000000e+00	1347.0
10	TraesCS4B01G120400	chr5D	82.021	1613	252	20	824	2422	231352826	231351238	0.000000e+00	1338.0
11	TraesCS4B01G120400	chr5B	81.400	1629	251	24	793	2413	275033241	275034825	0.000000e+00	1282.0
12	TraesCS4B01G120400	chr5B	94.378	249	7	2	3029	3270	492584672	492584920	3.420000e-100	375.0
13	TraesCS4B01G120400	chr5B	94.332	247	7	2	3032	3271	94094075	94094321	4.420000e-99	372.0
14	TraesCS4B01G120400	chr5B	94.332	247	7	2	3032	3271	94095665	94095911	4.420000e-99	372.0
15	TraesCS4B01G120400	chr5B	94.332	247	7	2	3032	3271	291075370	291075616	4.420000e-99	372.0
16	TraesCS4B01G120400	chr3A	94.758	248	6	2	3032	3272	724741077	724741324	2.640000e-101	379.0
17	TraesCS4B01G120400	chr6B	94.737	247	6	2	3032	3271	502314517	502314271	9.500000e-101	377.0
18	TraesCS4B01G120400	chr3D	94.378	249	7	2	3032	3273	268942933	268942685	3.420000e-100	375.0
19	TraesCS4B01G120400	chr1B	94.000	250	8	2	3032	3274	57105792	57105543	4.420000e-99	372.0
20	TraesCS4B01G120400	chr7A	87.838	74	9	0	3467	3540	717984485	717984558	1.790000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G120400	chr4B	141426402	141430025	3623	True	6693	6693	100.000000	1	3624	1	chr4B.!!$R1	3623
1	TraesCS4B01G120400	chr4D	99160395	99163772	3377	True	1244	4320	94.405000	1	3624	4	chr4D.!!$R1	3623
2	TraesCS4B01G120400	chr4A	476978031	476981326	3295	False	1625	4050	90.506667	1	3624	3	chr4A.!!$F1	3623
3	TraesCS4B01G120400	chr5A	325931515	325933150	1635	False	1347	1347	81.715000	771	2422	1	chr5A.!!$F1	1651
4	TraesCS4B01G120400	chr5D	231351238	231352826	1588	True	1338	1338	82.021000	824	2422	1	chr5D.!!$R1	1598
5	TraesCS4B01G120400	chr5B	275033241	275034825	1584	False	1282	1282	81.400000	793	2413	1	chr5B.!!$F1	1620
6	TraesCS4B01G120400	chr5B	94094075	94095911	1836	False	372	372	94.332000	3032	3271	2	chr5B.!!$F4	239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
481	493	0.737219	GCAGAAGTATGCAGCCTTGG	59.263	55.0	5.45	0.21	45.77	3.61	F
1215	1240	0.331954	AGGAGCCTAGAGTCGAACCA	59.668	55.0	0.00	0.00	0.00	3.67	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1842	1867	0.259938	ATTGGGGTCCAGGATCTTGC	59.74	55.0	0.00	0.0	33.81	4.01	R
2855	2902	0.760189	AGAGCCATCTCTCCAGAGGC	60.76	60.0	3.72	0.0	46.32	4.70	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
55	64	3.433615	GCTAGTTTGTGCGTCTTCTTCAT	59.566	43.478	0.00	0.00	0.00	2.57
68	77	4.039124	GTCTTCTTCATTTTTGCCAAGGGA	59.961	41.667	0.00	0.00	0.00	4.20
75	84	4.778958	TCATTTTTGCCAAGGGAGAATCAT	59.221	37.500	0.00	0.00	36.25	2.45
84	93	2.577970	AGGGAGAATCATTGGGGAAGT	58.422	47.619	0.00	0.00	36.25	3.01
113	122	1.831736	CCCGTCTATCAGAGTTTGGGT	59.168	52.381	0.00	0.00	31.35	4.51
114	123	2.418746	CCCGTCTATCAGAGTTTGGGTG	60.419	54.545	0.00	0.00	31.35	4.61
116	125	3.254060	CGTCTATCAGAGTTTGGGTGTG	58.746	50.000	0.00	0.00	0.00	3.82
121	130	3.417069	TCAGAGTTTGGGTGTGTATGG	57.583	47.619	0.00	0.00	0.00	2.74
132	141	3.709141	GGGTGTGTATGGGCCAAATTTAT	59.291	43.478	11.89	0.00	0.00	1.40
149	158	8.576442	CCAAATTTATGGCCTTCTAAATATCGT	58.424	33.333	3.32	0.00	32.78	3.73
238	247	7.271438	GCAAGTTGTTATGCTCTTAGTTTTAGC	59.729	37.037	4.48	0.00	39.46	3.09
279	288	5.532041	CGCAATTCTCTGCAAAATTAAACG	58.468	37.500	0.00	0.00	42.77	3.60
307	316	5.969423	TGGCCTTTTTCTTCATGATGAATC	58.031	37.500	20.94	10.36	35.59	2.52
311	320	6.750963	GCCTTTTTCTTCATGATGAATCTGTC	59.249	38.462	20.94	9.86	35.59	3.51
362	371	9.817809	CTATAGTTTGTTAGAAATACTCCTGCA	57.182	33.333	0.00	0.00	0.00	4.41
365	374	8.494016	AGTTTGTTAGAAATACTCCTGCATAC	57.506	34.615	0.00	0.00	0.00	2.39
366	375	7.277981	AGTTTGTTAGAAATACTCCTGCATACG	59.722	37.037	0.00	0.00	0.00	3.06
367	376	6.459670	TGTTAGAAATACTCCTGCATACGA	57.540	37.500	0.00	0.00	0.00	3.43
393	402	5.860648	TTTTCCCCAAGAGGTAAAGATCT	57.139	39.130	0.00	0.00	0.00	2.75
397	406	5.850278	TCCCCAAGAGGTAAAGATCTAGAA	58.150	41.667	0.00	0.00	0.00	2.10
398	407	5.900123	TCCCCAAGAGGTAAAGATCTAGAAG	59.100	44.000	0.00	0.00	0.00	2.85
427	436	3.987220	GAGTTGCTTCTGAACTCTGACTC	59.013	47.826	6.62	0.00	44.02	3.36
433	442	4.261994	GCTTCTGAACTCTGACTCTTCTGT	60.262	45.833	0.00	0.00	0.00	3.41
465	474	5.181811	TGTTTACATTCTCAACTGGATGCAG	59.818	40.000	13.34	13.34	0.00	4.41
481	493	0.737219	GCAGAAGTATGCAGCCTTGG	59.263	55.000	5.45	0.21	45.77	3.61
499	517	8.793592	CAGCCTTGGTTCTAAAGTAAAATAAGT	58.206	33.333	0.00	0.00	0.00	2.24
532	550	7.510630	CAGATACGTTTTCTGTTGTTTCTAGG	58.489	38.462	16.14	0.00	36.64	3.02
533	551	7.170998	CAGATACGTTTTCTGTTGTTTCTAGGT	59.829	37.037	16.14	0.00	36.64	3.08
534	552	7.713942	AGATACGTTTTCTGTTGTTTCTAGGTT	59.286	33.333	0.00	0.00	0.00	3.50
535	553	6.505044	ACGTTTTCTGTTGTTTCTAGGTTT	57.495	33.333	0.00	0.00	0.00	3.27
536	554	6.916440	ACGTTTTCTGTTGTTTCTAGGTTTT	58.084	32.000	0.00	0.00	0.00	2.43
537	555	7.372714	ACGTTTTCTGTTGTTTCTAGGTTTTT	58.627	30.769	0.00	0.00	0.00	1.94
607	627	3.933955	TGTTTCATATAAACCACCGACCG	59.066	43.478	0.00	0.00	0.00	4.79
687	708	4.458989	TGTTTCACCATTCTTCTGTATGCC	59.541	41.667	0.00	0.00	0.00	4.40
816	837	5.426689	TGCAGAGAACTCCAATACAGAAT	57.573	39.130	0.00	0.00	0.00	2.40
1215	1240	0.331954	AGGAGCCTAGAGTCGAACCA	59.668	55.000	0.00	0.00	0.00	3.67
1786	1811	3.262151	TGGACATGTACCGGAAGATTGAA	59.738	43.478	9.46	0.00	0.00	2.69
1842	1867	3.003068	CACAAACTCCAGAAGCTCTTGTG	59.997	47.826	0.00	0.30	37.08	3.33
1909	1934	8.097662	CAGAAGATAAAAGAGTCTACCTGGTTT	58.902	37.037	3.84	0.00	0.00	3.27
2027	2052	4.142730	GGAAGAACACTCATGAAGATGTGC	60.143	45.833	11.58	8.13	32.23	4.57
2245	2270	0.953727	GTGTGGTGAAGATGCAAGCA	59.046	50.000	0.00	0.00	0.00	3.91
2517	2546	5.984725	TCAGCTGGAACGATCCTATTTTAA	58.015	37.500	15.13	0.00	46.70	1.52
2522	2551	6.238759	GCTGGAACGATCCTATTTTAAATGCT	60.239	38.462	13.40	0.00	46.70	3.79
2649	2696	6.989169	ACTACTCCTGTCATAATGCTCATTTC	59.011	38.462	0.00	0.00	32.50	2.17
2712	2759	3.432326	GCTCCCACTACACCTCCATAAAG	60.432	52.174	0.00	0.00	0.00	1.85
2801	2848	4.134563	TGGAAGAAAGCTACAACTGTTCC	58.865	43.478	0.00	0.00	34.08	3.62
2803	2850	3.470645	AGAAAGCTACAACTGTTCCGT	57.529	42.857	0.00	0.00	0.00	4.69
2804	2851	3.805207	AGAAAGCTACAACTGTTCCGTT	58.195	40.909	0.00	0.00	0.00	4.44
2805	2852	4.196971	AGAAAGCTACAACTGTTCCGTTT	58.803	39.130	0.00	0.00	0.00	3.60
2808	2855	4.547406	AGCTACAACTGTTCCGTTTTTC	57.453	40.909	0.00	0.00	0.00	2.29
2826	2873	7.860373	CCGTTTTTCTTTTCATGATGTGAGTTA	59.140	33.333	0.00	0.00	38.29	2.24
2855	2902	8.807948	TTTGGGTAAGATAATCTTCAGAAAGG	57.192	34.615	0.00	0.00	37.89	3.11
2891	2938	5.219739	TGGCTCTCCCTTCATCTAGTTTAT	58.780	41.667	0.00	0.00	0.00	1.40
2938	2985	7.839907	TGAATATGTCCCAAGGAAATTTCTTG	58.160	34.615	17.42	17.07	40.75	3.02
3015	3062	1.795768	ACCAATGCACAGACTGTACG	58.204	50.000	8.02	0.00	0.00	3.67
3026	3073	4.454847	CACAGACTGTACGAAGGAAGTAGA	59.545	45.833	8.02	0.00	0.00	2.59
3027	3074	5.048921	CACAGACTGTACGAAGGAAGTAGAA	60.049	44.000	8.02	0.00	0.00	2.10
3028	3075	5.533903	ACAGACTGTACGAAGGAAGTAGAAA	59.466	40.000	6.24	0.00	0.00	2.52
3029	3076	6.040166	ACAGACTGTACGAAGGAAGTAGAAAA	59.960	38.462	6.24	0.00	0.00	2.29
3030	3077	7.091443	CAGACTGTACGAAGGAAGTAGAAAAT	58.909	38.462	0.00	0.00	0.00	1.82
3104	3151	3.031736	AGATAAGGGTCGCTTGCTTAGA	58.968	45.455	12.19	0.00	0.00	2.10
3195	3242	8.739972	TCTAATCAAACAAGAATTAAGAAGGCC	58.260	33.333	0.00	0.00	0.00	5.19
3262	3316	2.818132	CCCTCCTTCTAGCAGCGG	59.182	66.667	0.00	0.00	0.00	5.52
3306	4816	3.006323	GTGCCTATTCAGTCTGATCCGAT	59.994	47.826	2.68	0.00	0.00	4.18
3340	4850	6.920569	AAAACTGGTAATAGATAGCCAACG	57.079	37.500	0.00	0.00	0.00	4.10
3428	4938	6.560253	TCCTCTTATTGAACAACAGAAAGC	57.440	37.500	0.00	0.00	0.00	3.51
3429	4939	6.061441	TCCTCTTATTGAACAACAGAAAGCA	58.939	36.000	0.00	0.00	0.00	3.91
3576	5169	4.099419	GGTCCAACATCCAAGTGTTTCTTT	59.901	41.667	0.00	0.00	40.17	2.52
3592	5185	8.129211	AGTGTTTCTTTTTCACTTTCCTAATCG	58.871	33.333	0.00	0.00	39.00	3.34
3594	5187	8.679100	TGTTTCTTTTTCACTTTCCTAATCGAA	58.321	29.630	0.00	0.00	0.00	3.71
3605	5198	8.028938	CACTTTCCTAATCGAACATCCAAAAAT	58.971	33.333	0.00	0.00	0.00	1.82
3606	5199	9.238368	ACTTTCCTAATCGAACATCCAAAAATA	57.762	29.630	0.00	0.00	0.00	1.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	1.197721	CGCACAAACTAGCCAAGAAGG	59.802	52.381	0.00	0.00	41.84	3.46
26	27	1.873591	ACGCACAAACTAGCCAAGAAG	59.126	47.619	0.00	0.00	0.00	2.85
27	28	1.871039	GACGCACAAACTAGCCAAGAA	59.129	47.619	0.00	0.00	0.00	2.52
28	29	1.070134	AGACGCACAAACTAGCCAAGA	59.930	47.619	0.00	0.00	0.00	3.02
29	30	1.512926	AGACGCACAAACTAGCCAAG	58.487	50.000	0.00	0.00	0.00	3.61
55	64	4.262981	CCAATGATTCTCCCTTGGCAAAAA	60.263	41.667	0.00	0.00	32.44	1.94
68	77	7.343057	GGAAAGAATTACTTCCCCAATGATTCT	59.657	37.037	6.73	0.00	37.93	2.40
79	88	6.579865	TGATAGACGGGAAAGAATTACTTCC	58.420	40.000	8.83	8.83	37.93	3.46
84	93	7.419711	AACTCTGATAGACGGGAAAGAATTA	57.580	36.000	0.00	0.00	0.00	1.40
132	141	3.005472	CCTCGACGATATTTAGAAGGCCA	59.995	47.826	5.01	0.00	0.00	5.36
139	148	3.290308	AGCAGCCTCGACGATATTTAG	57.710	47.619	0.00	0.00	0.00	1.85
143	152	1.409064	TGAAAGCAGCCTCGACGATAT	59.591	47.619	0.00	0.00	0.00	1.63
145	154	0.459237	CTGAAAGCAGCCTCGACGAT	60.459	55.000	0.00	0.00	34.95	3.73
185	194	1.683943	CAGATCCAATCCAACCGCAT	58.316	50.000	0.00	0.00	0.00	4.73
197	206	3.173953	ACTTGCAAATTCCCAGATCCA	57.826	42.857	0.00	0.00	0.00	3.41
238	247	1.334869	GCGCTATTCCTCCAACCAATG	59.665	52.381	0.00	0.00	0.00	2.82
244	253	3.118261	AGAGAATTGCGCTATTCCTCCAA	60.118	43.478	31.61	7.18	35.56	3.53
279	288	7.322664	TCATCATGAAGAAAAAGGCCAAATAC	58.677	34.615	5.01	0.00	0.00	1.89
307	316	3.314553	AGAAACATAACACGGTCGACAG	58.685	45.455	18.91	16.61	0.00	3.51
311	320	5.119588	ACATTGTAGAAACATAACACGGTCG	59.880	40.000	0.00	0.00	34.97	4.79
382	391	4.339814	CGCTGGTCTTCTAGATCTTTACCT	59.660	45.833	0.00	0.00	0.00	3.08
393	402	3.814577	GCAACTCGCTGGTCTTCTA	57.185	52.632	0.00	0.00	37.77	2.10
465	474	2.716217	AGAACCAAGGCTGCATACTTC	58.284	47.619	0.50	0.00	0.00	3.01
539	557	6.045955	GGCAAACACCAGAATTAGTCAAAAA	58.954	36.000	0.00	0.00	0.00	1.94
540	558	5.596845	GGCAAACACCAGAATTAGTCAAAA	58.403	37.500	0.00	0.00	0.00	2.44
541	559	4.261405	CGGCAAACACCAGAATTAGTCAAA	60.261	41.667	0.00	0.00	0.00	2.69
542	560	3.252215	CGGCAAACACCAGAATTAGTCAA	59.748	43.478	0.00	0.00	0.00	3.18
543	561	2.811431	CGGCAAACACCAGAATTAGTCA	59.189	45.455	0.00	0.00	0.00	3.41
544	562	2.812011	ACGGCAAACACCAGAATTAGTC	59.188	45.455	0.00	0.00	0.00	2.59
545	563	2.552315	CACGGCAAACACCAGAATTAGT	59.448	45.455	0.00	0.00	0.00	2.24
546	564	2.552315	ACACGGCAAACACCAGAATTAG	59.448	45.455	0.00	0.00	0.00	1.73
547	565	2.292016	CACACGGCAAACACCAGAATTA	59.708	45.455	0.00	0.00	0.00	1.40
548	566	1.066908	CACACGGCAAACACCAGAATT	59.933	47.619	0.00	0.00	0.00	2.17
549	567	0.667993	CACACGGCAAACACCAGAAT	59.332	50.000	0.00	0.00	0.00	2.40
550	568	1.999071	GCACACGGCAAACACCAGAA	61.999	55.000	0.00	0.00	43.97	3.02
551	569	2.477176	GCACACGGCAAACACCAGA	61.477	57.895	0.00	0.00	43.97	3.86
552	570	2.026014	GCACACGGCAAACACCAG	59.974	61.111	0.00	0.00	43.97	4.00
607	627	0.179034	GACAGGATCAGGGACATGGC	60.179	60.000	0.00	0.00	0.00	4.40
780	801	8.020244	GGAGTTCTCTGCAAATAAGAAAAGAAG	58.980	37.037	0.00	0.00	31.26	2.85
816	837	0.036388	CCCGAGGCTTTGAGTGCTTA	60.036	55.000	0.00	0.00	0.00	3.09
1095	1116	1.136147	GCCATGACTTCAAGCTGCG	59.864	57.895	0.00	0.00	0.00	5.18
1215	1240	1.064060	GCATCTTTATGGCGACGCTTT	59.936	47.619	20.77	9.93	33.38	3.51
1304	1329	1.321474	ATGTTCTTGTGTGCCACCAG	58.679	50.000	0.00	2.35	32.73	4.00
1564	1589	1.160137	GTGCGCTCAGTCCAAAATCT	58.840	50.000	9.73	0.00	0.00	2.40
1786	1811	2.206576	GGCACCTGAAATCTCCTTGT	57.793	50.000	0.00	0.00	0.00	3.16
1842	1867	0.259938	ATTGGGGTCCAGGATCTTGC	59.740	55.000	0.00	0.00	33.81	4.01
1909	1934	2.902457	GCCCCTTGGACCTTTCCGA	61.902	63.158	0.00	0.00	46.37	4.55
2027	2052	2.674563	TTTGTCACCGTCAGGGGCTG	62.675	60.000	0.00	0.00	41.97	4.85
2245	2270	1.925959	CCATTCCTTCCCTCCTTCCTT	59.074	52.381	0.00	0.00	0.00	3.36
2517	2546	9.762933	ATATTTTGTACAAAGAACACAAGCATT	57.237	25.926	19.72	0.00	33.96	3.56
2625	2655	6.145209	CGAAATGAGCATTATGACAGGAGTAG	59.855	42.308	0.00	0.00	0.00	2.57
2627	2657	4.813161	CGAAATGAGCATTATGACAGGAGT	59.187	41.667	0.00	0.00	0.00	3.85
2628	2658	4.212847	CCGAAATGAGCATTATGACAGGAG	59.787	45.833	0.00	0.00	0.00	3.69
2649	2696	4.202101	TGGCATAGCATTTAATTTCACCCG	60.202	41.667	0.00	0.00	0.00	5.28
2801	2848	7.684062	AACTCACATCATGAAAAGAAAAACG	57.316	32.000	0.00	0.00	36.69	3.60
2855	2902	0.760189	AGAGCCATCTCTCCAGAGGC	60.760	60.000	3.72	0.00	46.32	4.70
2891	2938	6.880484	TCAGCTCCCGATAAGTAATAAACAA	58.120	36.000	0.00	0.00	0.00	2.83
2926	2973	5.307716	TCCAAAATCTGGCAAGAAATTTCCT	59.692	36.000	14.61	0.00	45.98	3.36
2938	2985	8.953368	ATATGAAAATTCTTCCAAAATCTGGC	57.047	30.769	0.00	0.00	45.98	4.85
3026	3073	6.094464	GGCCCATTACGTACTCTAACAATTTT	59.906	38.462	0.00	0.00	0.00	1.82
3027	3074	5.587443	GGCCCATTACGTACTCTAACAATTT	59.413	40.000	0.00	0.00	0.00	1.82
3028	3075	5.104652	AGGCCCATTACGTACTCTAACAATT	60.105	40.000	0.00	0.00	0.00	2.32
3029	3076	4.407945	AGGCCCATTACGTACTCTAACAAT	59.592	41.667	0.00	0.00	0.00	2.71
3030	3077	3.770933	AGGCCCATTACGTACTCTAACAA	59.229	43.478	0.00	0.00	0.00	2.83
3068	3115	8.087136	CGACCCTTATCTCTAATTAACCCTAAC	58.913	40.741	0.00	0.00	0.00	2.34
3178	3225	2.654896	AGGGGGCCTTCTTAATTCTTGT	59.345	45.455	0.84	0.00	0.00	3.16
3262	3316	6.648502	CACCACTTGTTGATTTTTGTTATGC	58.351	36.000	0.00	0.00	0.00	3.14
3415	4925	5.625311	CCGATAACTTTGCTTTCTGTTGTTC	59.375	40.000	0.00	0.00	0.00	3.18
3576	5169	6.234920	TGGATGTTCGATTAGGAAAGTGAAA	58.765	36.000	0.00	0.00	0.00	2.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.