Multiple sequence alignment - TraesCS4B01G118900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G118900 chr4B 100.000 2820 0 0 1 2820 139509725 139512544 0.000000e+00 5208.0
1 TraesCS4B01G118900 chr4B 99.944 1789 1 0 1 1789 139471277 139473065 0.000000e+00 3299.0
2 TraesCS4B01G118900 chr4B 98.588 1133 9 4 663 1789 139398790 139399921 0.000000e+00 1997.0
3 TraesCS4B01G118900 chr4B 92.608 487 25 9 1782 2263 139399318 139399798 0.000000e+00 689.0
4 TraesCS4B01G118900 chr4B 92.402 487 25 10 1782 2263 139472463 139472942 0.000000e+00 684.0
5 TraesCS4B01G118900 chr4B 92.402 487 25 10 1782 2263 139510911 139511390 0.000000e+00 684.0
6 TraesCS4B01G118900 chr4B 92.402 487 25 10 1187 1666 139511506 139511987 0.000000e+00 684.0
7 TraesCS4B01G118900 chr4B 88.346 532 57 3 2265 2793 517983706 517984235 3.960000e-178 634.0
8 TraesCS4B01G118900 chr4B 94.012 167 5 2 417 578 139528951 139529117 6.030000e-62 248.0
9 TraesCS4B01G118900 chr4B 96.364 55 2 0 50 104 139528807 139528861 1.080000e-14 91.6
10 TraesCS4B01G118900 chr4A 89.137 1344 75 32 418 1716 478303308 478301991 0.000000e+00 1607.0
11 TraesCS4B01G118900 chr4A 87.893 1305 77 50 544 1787 478340498 478339214 0.000000e+00 1459.0
12 TraesCS4B01G118900 chr4A 85.458 1004 71 37 702 1661 478219998 478219026 0.000000e+00 976.0
13 TraesCS4B01G118900 chr4A 88.277 563 57 6 2264 2820 706871813 706872372 0.000000e+00 665.0
14 TraesCS4B01G118900 chr4A 88.212 509 32 12 1782 2263 478302551 478302044 1.460000e-162 582.0
15 TraesCS4B01G118900 chr4A 88.957 489 26 17 1782 2244 478339854 478339368 1.880000e-161 579.0
16 TraesCS4B01G118900 chr4A 87.928 497 34 9 1782 2253 478219525 478219030 1.900000e-156 562.0
17 TraesCS4B01G118900 chr4A 86.325 117 7 2 64 172 478303421 478303306 4.930000e-23 119.0
18 TraesCS4B01G118900 chr4D 95.338 622 23 3 812 1432 97508429 97509045 0.000000e+00 983.0
19 TraesCS4B01G118900 chr4D 85.402 1007 68 41 702 1661 97957630 97958604 0.000000e+00 972.0
20 TraesCS4B01G118900 chr4D 90.883 691 37 18 990 1657 97720614 97721301 0.000000e+00 904.0
21 TraesCS4B01G118900 chr4D 93.900 541 17 10 418 945 97604702 97605239 0.000000e+00 802.0
22 TraesCS4B01G118900 chr4D 96.614 443 15 0 990 1432 97605241 97605683 0.000000e+00 736.0
23 TraesCS4B01G118900 chr4D 91.252 503 27 10 418 904 97718131 97718632 0.000000e+00 669.0
24 TraesCS4B01G118900 chr4D 88.081 495 31 18 1782 2254 97720813 97721301 1.900000e-156 562.0
25 TraesCS4B01G118900 chr4D 87.349 498 34 10 1782 2253 97958106 97958600 6.870000e-151 544.0
26 TraesCS4B01G118900 chr4D 90.663 332 9 5 1461 1789 97605748 97606060 3.360000e-114 422.0
27 TraesCS4B01G118900 chr4D 90.361 332 10 5 1461 1789 97509110 97509422 1.560000e-112 416.0
28 TraesCS4B01G118900 chr4D 92.565 269 17 2 1782 2050 97605438 97605703 1.580000e-102 383.0
29 TraesCS4B01G118900 chr4D 92.193 269 18 2 1782 2050 97508800 97509065 7.370000e-101 377.0
30 TraesCS4B01G118900 chr4D 95.413 218 5 3 2046 2258 97509094 97509311 2.690000e-90 342.0
31 TraesCS4B01G118900 chr4D 95.413 218 5 3 2046 2258 97605732 97605949 2.690000e-90 342.0
32 TraesCS4B01G118900 chr4D 91.111 180 8 2 1 172 97604525 97604704 1.310000e-58 237.0
33 TraesCS4B01G118900 chr4D 91.111 180 8 2 1 172 97717954 97718133 1.310000e-58 237.0
34 TraesCS4B01G118900 chr5A 93.238 562 32 2 2265 2820 423925652 423925091 0.000000e+00 822.0
35 TraesCS4B01G118900 chr3A 89.698 563 52 2 2264 2820 747301223 747300661 0.000000e+00 713.0
36 TraesCS4B01G118900 chr3A 89.165 563 55 3 2264 2820 60197418 60196856 0.000000e+00 697.0
37 TraesCS4B01G118900 chr5D 89.680 562 52 3 2265 2820 435800134 435799573 0.000000e+00 712.0
38 TraesCS4B01G118900 chrUn 100.000 381 0 0 1 381 403947928 403947548 0.000000e+00 704.0
39 TraesCS4B01G118900 chrUn 100.000 381 0 0 1 381 460039494 460039114 0.000000e+00 704.0
40 TraesCS4B01G118900 chr3D 89.513 534 52 3 2263 2793 609355749 609356281 0.000000e+00 673.0
41 TraesCS4B01G118900 chr3B 87.922 563 61 3 2264 2820 816249771 816249210 0.000000e+00 656.0
42 TraesCS4B01G118900 chr6B 87.544 562 63 4 2265 2820 38596594 38597154 0.000000e+00 643.0
43 TraesCS4B01G118900 chr2B 81.124 249 42 2 171 414 313001343 313001095 7.970000e-46 195.0
44 TraesCS4B01G118900 chr7D 80.876 251 42 2 170 414 422271125 422271375 2.870000e-45 193.0
45 TraesCS4B01G118900 chr6D 80.876 251 42 2 170 414 6601544 6601294 2.870000e-45 193.0
46 TraesCS4B01G118900 chr2D 80.800 250 41 3 170 413 99280118 99279870 3.710000e-44 189.0
47 TraesCS4B01G118900 chr1D 80.478 251 43 2 170 414 52239580 52239830 1.330000e-43 187.0
48 TraesCS4B01G118900 chr1D 80.478 251 43 2 170 414 213470240 213470490 1.330000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G118900 chr4B 139509725 139512544 2819 False 2192.000000 5208 94.934667 1 2820 3 chr4B.!!$F4 2819
1 TraesCS4B01G118900 chr4B 139471277 139473065 1788 False 1991.500000 3299 96.173000 1 2263 2 chr4B.!!$F3 2262
2 TraesCS4B01G118900 chr4B 139398790 139399921 1131 False 1343.000000 1997 95.598000 663 2263 2 chr4B.!!$F2 1600
3 TraesCS4B01G118900 chr4B 517983706 517984235 529 False 634.000000 634 88.346000 2265 2793 1 chr4B.!!$F1 528
4 TraesCS4B01G118900 chr4A 478339214 478340498 1284 True 1019.000000 1459 88.425000 544 2244 2 chr4A.!!$R3 1700
5 TraesCS4B01G118900 chr4A 478301991 478303421 1430 True 769.333333 1607 87.891333 64 2263 3 chr4A.!!$R2 2199
6 TraesCS4B01G118900 chr4A 478219026 478219998 972 True 769.000000 976 86.693000 702 2253 2 chr4A.!!$R1 1551
7 TraesCS4B01G118900 chr4A 706871813 706872372 559 False 665.000000 665 88.277000 2264 2820 1 chr4A.!!$F1 556
8 TraesCS4B01G118900 chr4D 97957630 97958604 974 False 758.000000 972 86.375500 702 2253 2 chr4D.!!$F4 1551
9 TraesCS4B01G118900 chr4D 97717954 97721301 3347 False 593.000000 904 90.331750 1 2254 4 chr4D.!!$F3 2253
10 TraesCS4B01G118900 chr4D 97508429 97509422 993 False 529.500000 983 93.326250 812 2258 4 chr4D.!!$F1 1446
11 TraesCS4B01G118900 chr4D 97604525 97606060 1535 False 487.000000 802 93.377667 1 2258 6 chr4D.!!$F2 2257
12 TraesCS4B01G118900 chr5A 423925091 423925652 561 True 822.000000 822 93.238000 2265 2820 1 chr5A.!!$R1 555
13 TraesCS4B01G118900 chr3A 747300661 747301223 562 True 713.000000 713 89.698000 2264 2820 1 chr3A.!!$R2 556
14 TraesCS4B01G118900 chr3A 60196856 60197418 562 True 697.000000 697 89.165000 2264 2820 1 chr3A.!!$R1 556
15 TraesCS4B01G118900 chr5D 435799573 435800134 561 True 712.000000 712 89.680000 2265 2820 1 chr5D.!!$R1 555
16 TraesCS4B01G118900 chr3D 609355749 609356281 532 False 673.000000 673 89.513000 2263 2793 1 chr3D.!!$F1 530
17 TraesCS4B01G118900 chr3B 816249210 816249771 561 True 656.000000 656 87.922000 2264 2820 1 chr3B.!!$R1 556
18 TraesCS4B01G118900 chr6B 38596594 38597154 560 False 643.000000 643 87.544000 2265 2820 1 chr6B.!!$F1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 579 1.610522 GCACAGGAAAGCAACATGAGT 59.389 47.619 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 4069 0.030101 GAAGACGATGCTCTCCTCGG 59.97 60.0 0.0 0.0 39.16 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
569 579 1.610522 GCACAGGAAAGCAACATGAGT 59.389 47.619 0.00 0.00 0.00 3.41
1791 3876 9.959749 TTTTCAAAAATAATTACGCACTCTTCT 57.040 25.926 0.00 0.00 0.00 2.85
1792 3877 9.959749 TTTCAAAAATAATTACGCACTCTTCTT 57.040 25.926 0.00 0.00 0.00 2.52
1793 3878 9.607285 TTCAAAAATAATTACGCACTCTTCTTC 57.393 29.630 0.00 0.00 0.00 2.87
1794 3879 8.234546 TCAAAAATAATTACGCACTCTTCTTCC 58.765 33.333 0.00 0.00 0.00 3.46
1795 3880 7.681939 AAAATAATTACGCACTCTTCTTCCA 57.318 32.000 0.00 0.00 0.00 3.53
1796 3881 6.663944 AATAATTACGCACTCTTCTTCCAC 57.336 37.500 0.00 0.00 0.00 4.02
1797 3882 2.060326 TTACGCACTCTTCTTCCACG 57.940 50.000 0.00 0.00 0.00 4.94
1798 3883 1.241165 TACGCACTCTTCTTCCACGA 58.759 50.000 0.00 0.00 0.00 4.35
1799 3884 0.318784 ACGCACTCTTCTTCCACGAC 60.319 55.000 0.00 0.00 0.00 4.34
1800 3885 0.039074 CGCACTCTTCTTCCACGACT 60.039 55.000 0.00 0.00 0.00 4.18
1801 3886 1.423395 GCACTCTTCTTCCACGACTG 58.577 55.000 0.00 0.00 0.00 3.51
1802 3887 1.423395 CACTCTTCTTCCACGACTGC 58.577 55.000 0.00 0.00 0.00 4.40
1803 3888 1.000283 CACTCTTCTTCCACGACTGCT 60.000 52.381 0.00 0.00 0.00 4.24
1804 3889 1.689273 ACTCTTCTTCCACGACTGCTT 59.311 47.619 0.00 0.00 0.00 3.91
1805 3890 2.288518 ACTCTTCTTCCACGACTGCTTC 60.289 50.000 0.00 0.00 0.00 3.86
1813 3898 2.125912 CGACTGCTTCGTCCAGGG 60.126 66.667 0.63 0.00 43.24 4.45
1814 3899 2.435059 GACTGCTTCGTCCAGGGC 60.435 66.667 0.00 0.00 34.65 5.19
1815 3900 2.925170 ACTGCTTCGTCCAGGGCT 60.925 61.111 0.00 0.00 34.65 5.19
1816 3901 2.435586 CTGCTTCGTCCAGGGCTG 60.436 66.667 0.00 0.00 0.00 4.85
1817 3902 3.241530 TGCTTCGTCCAGGGCTGT 61.242 61.111 0.00 0.00 0.00 4.40
1818 3903 2.743928 GCTTCGTCCAGGGCTGTG 60.744 66.667 0.00 0.00 0.00 3.66
1819 3904 3.059982 CTTCGTCCAGGGCTGTGA 58.940 61.111 0.00 0.00 0.00 3.58
1820 3905 1.374758 CTTCGTCCAGGGCTGTGAC 60.375 63.158 0.00 0.00 0.00 3.67
1821 3906 3.220999 TTCGTCCAGGGCTGTGACG 62.221 63.158 14.04 14.04 46.05 4.35
1831 3916 4.731612 CTGTGACGCCTCGCTGCT 62.732 66.667 0.00 0.00 0.00 4.24
1840 3925 4.426112 CTCGCTGCTGCTGGACGA 62.426 66.667 14.03 8.51 36.97 4.20
1841 3926 4.724602 TCGCTGCTGCTGGACGAC 62.725 66.667 14.03 0.00 36.97 4.34
1868 3953 3.843240 CTGCGCGGCGAGAAGAAC 61.843 66.667 28.54 6.77 0.00 3.01
1876 3961 3.479269 CGAGAAGAACGCCACGCC 61.479 66.667 0.00 0.00 0.00 5.68
1877 3962 3.119096 GAGAAGAACGCCACGCCC 61.119 66.667 0.00 0.00 0.00 6.13
1878 3963 3.876589 GAGAAGAACGCCACGCCCA 62.877 63.158 0.00 0.00 0.00 5.36
1879 3964 2.975799 GAAGAACGCCACGCCCAA 60.976 61.111 0.00 0.00 0.00 4.12
1880 3965 3.249973 GAAGAACGCCACGCCCAAC 62.250 63.158 0.00 0.00 0.00 3.77
1881 3966 4.555709 AGAACGCCACGCCCAACA 62.556 61.111 0.00 0.00 0.00 3.33
1882 3967 3.587933 GAACGCCACGCCCAACAA 61.588 61.111 0.00 0.00 0.00 2.83
1883 3968 3.127352 GAACGCCACGCCCAACAAA 62.127 57.895 0.00 0.00 0.00 2.83
1884 3969 2.615262 GAACGCCACGCCCAACAAAA 62.615 55.000 0.00 0.00 0.00 2.44
1885 3970 2.105128 CGCCACGCCCAACAAAAA 59.895 55.556 0.00 0.00 0.00 1.94
1886 3971 2.234335 CGCCACGCCCAACAAAAAC 61.234 57.895 0.00 0.00 0.00 2.43
1887 3972 1.142965 GCCACGCCCAACAAAAACT 59.857 52.632 0.00 0.00 0.00 2.66
1888 3973 0.874175 GCCACGCCCAACAAAAACTC 60.874 55.000 0.00 0.00 0.00 3.01
1889 3974 0.249280 CCACGCCCAACAAAAACTCC 60.249 55.000 0.00 0.00 0.00 3.85
1890 3975 0.593773 CACGCCCAACAAAAACTCCG 60.594 55.000 0.00 0.00 0.00 4.63
1891 3976 1.660264 CGCCCAACAAAAACTCCGC 60.660 57.895 0.00 0.00 0.00 5.54
1892 3977 1.300620 GCCCAACAAAAACTCCGCC 60.301 57.895 0.00 0.00 0.00 6.13
1893 3978 2.022240 GCCCAACAAAAACTCCGCCA 62.022 55.000 0.00 0.00 0.00 5.69
1894 3979 0.031994 CCCAACAAAAACTCCGCCAG 59.968 55.000 0.00 0.00 0.00 4.85
1895 3980 1.028905 CCAACAAAAACTCCGCCAGA 58.971 50.000 0.00 0.00 0.00 3.86
1903 3988 3.068691 CTCCGCCAGAGGGTTCGA 61.069 66.667 0.00 0.00 39.13 3.71
1904 3989 3.068691 TCCGCCAGAGGGTTCGAG 61.069 66.667 0.00 0.00 36.17 4.04
1905 3990 4.148825 CCGCCAGAGGGTTCGAGG 62.149 72.222 0.00 0.00 36.17 4.63
1906 3991 3.382832 CGCCAGAGGGTTCGAGGT 61.383 66.667 0.00 0.00 36.17 3.85
1907 3992 2.579738 GCCAGAGGGTTCGAGGTC 59.420 66.667 0.00 0.00 36.17 3.85
1908 3993 2.283529 GCCAGAGGGTTCGAGGTCA 61.284 63.158 0.00 0.00 36.17 4.02
1909 3994 1.617947 GCCAGAGGGTTCGAGGTCAT 61.618 60.000 0.00 0.00 36.17 3.06
1910 3995 0.461961 CCAGAGGGTTCGAGGTCATC 59.538 60.000 0.00 0.00 0.00 2.92
1919 4004 2.278013 GAGGTCATCGACGCCGTC 60.278 66.667 7.29 7.29 37.05 4.79
1920 4005 3.047718 GAGGTCATCGACGCCGTCA 62.048 63.158 18.40 4.96 37.05 4.35
1921 4006 2.126228 GGTCATCGACGCCGTCAA 60.126 61.111 18.40 0.00 37.05 3.18
1922 4007 2.158959 GGTCATCGACGCCGTCAAG 61.159 63.158 18.40 6.16 37.05 3.02
1923 4008 2.158959 GTCATCGACGCCGTCAAGG 61.159 63.158 18.40 0.00 44.97 3.61
1941 4026 4.052229 CGGCCGTCGAGGAGTGTT 62.052 66.667 19.50 0.00 45.00 3.32
1942 4027 2.432628 GGCCGTCGAGGAGTGTTG 60.433 66.667 6.70 0.00 45.00 3.33
1943 4028 2.338984 GCCGTCGAGGAGTGTTGT 59.661 61.111 6.70 0.00 45.00 3.32
1944 4029 1.733399 GCCGTCGAGGAGTGTTGTC 60.733 63.158 6.70 0.00 45.00 3.18
1945 4030 1.080705 CCGTCGAGGAGTGTTGTCC 60.081 63.158 6.70 0.00 45.00 4.02
1946 4031 1.080705 CGTCGAGGAGTGTTGTCCC 60.081 63.158 0.00 0.00 37.31 4.46
1947 4032 1.080705 GTCGAGGAGTGTTGTCCCG 60.081 63.158 0.00 0.00 37.31 5.14
1948 4033 2.261671 CGAGGAGTGTTGTCCCGG 59.738 66.667 0.00 0.00 37.31 5.73
1949 4034 2.663196 GAGGAGTGTTGTCCCGGG 59.337 66.667 16.85 16.85 37.31 5.73
1950 4035 2.928396 AGGAGTGTTGTCCCGGGG 60.928 66.667 23.50 6.77 37.31 5.73
1951 4036 3.246880 GGAGTGTTGTCCCGGGGT 61.247 66.667 23.50 0.00 0.00 4.95
1952 4037 2.346365 GAGTGTTGTCCCGGGGTC 59.654 66.667 23.50 15.12 0.00 4.46
1953 4038 3.584868 GAGTGTTGTCCCGGGGTCG 62.585 68.421 23.50 0.00 0.00 4.79
1954 4039 3.932483 GTGTTGTCCCGGGGTCGT 61.932 66.667 23.50 0.00 33.95 4.34
1955 4040 3.618750 TGTTGTCCCGGGGTCGTC 61.619 66.667 23.50 8.60 33.95 4.20
1956 4041 3.308705 GTTGTCCCGGGGTCGTCT 61.309 66.667 23.50 0.00 33.95 4.18
1957 4042 2.993264 TTGTCCCGGGGTCGTCTC 60.993 66.667 23.50 3.45 33.95 3.36
1959 4044 4.755507 GTCCCGGGGTCGTCTCCT 62.756 72.222 23.50 0.00 33.95 3.69
1960 4045 4.753662 TCCCGGGGTCGTCTCCTG 62.754 72.222 23.50 0.00 33.95 3.86
1969 4054 4.498520 CGTCTCCTGCGCCGACAT 62.499 66.667 4.18 0.00 0.00 3.06
1970 4055 2.583593 GTCTCCTGCGCCGACATC 60.584 66.667 4.18 0.00 0.00 3.06
1971 4056 3.838271 TCTCCTGCGCCGACATCC 61.838 66.667 4.18 0.00 0.00 3.51
1972 4057 3.842923 CTCCTGCGCCGACATCCT 61.843 66.667 4.18 0.00 0.00 3.24
1973 4058 3.781770 CTCCTGCGCCGACATCCTC 62.782 68.421 4.18 0.00 0.00 3.71
1978 4063 4.592192 CGCCGACATCCTCGCCAT 62.592 66.667 0.00 0.00 41.46 4.40
1979 4064 2.663188 GCCGACATCCTCGCCATC 60.663 66.667 0.00 0.00 41.46 3.51
1980 4065 2.355126 CCGACATCCTCGCCATCG 60.355 66.667 0.00 0.00 41.46 3.84
1981 4066 3.032609 CGACATCCTCGCCATCGC 61.033 66.667 0.00 0.00 35.06 4.58
1982 4067 2.663188 GACATCCTCGCCATCGCC 60.663 66.667 0.00 0.00 35.26 5.54
1983 4068 4.592192 ACATCCTCGCCATCGCCG 62.592 66.667 0.00 0.00 35.26 6.46
1997 4082 4.959596 GCCGCCGAGGAGAGCATC 62.960 72.222 0.91 0.00 45.00 3.91
1998 4083 4.637489 CCGCCGAGGAGAGCATCG 62.637 72.222 0.00 0.00 46.85 3.84
1999 4084 3.893763 CGCCGAGGAGAGCATCGT 61.894 66.667 0.00 0.00 45.96 3.73
2000 4085 2.026879 GCCGAGGAGAGCATCGTC 59.973 66.667 0.00 2.51 45.96 4.20
2001 4086 2.485795 GCCGAGGAGAGCATCGTCT 61.486 63.158 9.17 0.00 45.96 4.18
2002 4087 2.010582 GCCGAGGAGAGCATCGTCTT 62.011 60.000 9.17 0.00 45.96 3.01
2003 4088 0.030101 CCGAGGAGAGCATCGTCTTC 59.970 60.000 9.17 0.00 45.96 2.87
2004 4089 0.316607 CGAGGAGAGCATCGTCTTCG 60.317 60.000 9.17 3.36 42.78 3.79
2005 4090 0.736053 GAGGAGAGCATCGTCTTCGT 59.264 55.000 4.85 0.00 42.67 3.85
2006 4091 1.941294 GAGGAGAGCATCGTCTTCGTA 59.059 52.381 4.85 0.00 42.67 3.43
2007 4092 2.355132 GAGGAGAGCATCGTCTTCGTAA 59.645 50.000 4.85 0.00 42.67 3.18
2008 4093 2.356382 AGGAGAGCATCGTCTTCGTAAG 59.644 50.000 0.00 0.00 42.67 2.34
2009 4094 2.097791 GGAGAGCATCGTCTTCGTAAGT 59.902 50.000 0.00 0.00 42.67 2.24
2010 4095 3.311871 GGAGAGCATCGTCTTCGTAAGTA 59.688 47.826 0.00 0.00 42.67 2.24
2011 4096 4.023878 GGAGAGCATCGTCTTCGTAAGTAT 60.024 45.833 0.00 0.00 42.67 2.12
2012 4097 5.098218 AGAGCATCGTCTTCGTAAGTATC 57.902 43.478 0.00 0.00 42.67 2.24
2013 4098 4.023878 AGAGCATCGTCTTCGTAAGTATCC 60.024 45.833 0.00 0.00 42.67 2.59
2014 4099 3.630769 AGCATCGTCTTCGTAAGTATCCA 59.369 43.478 0.00 0.00 38.33 3.41
2015 4100 4.097437 AGCATCGTCTTCGTAAGTATCCAA 59.903 41.667 0.00 0.00 38.33 3.53
2016 4101 4.802039 GCATCGTCTTCGTAAGTATCCAAA 59.198 41.667 0.00 0.00 38.33 3.28
2017 4102 5.276254 GCATCGTCTTCGTAAGTATCCAAAC 60.276 44.000 0.00 0.00 38.33 2.93
2018 4103 5.375417 TCGTCTTCGTAAGTATCCAAACA 57.625 39.130 0.00 0.00 38.33 2.83
2019 4104 5.957798 TCGTCTTCGTAAGTATCCAAACAT 58.042 37.500 0.00 0.00 38.33 2.71
2020 4105 7.087409 TCGTCTTCGTAAGTATCCAAACATA 57.913 36.000 0.00 0.00 38.33 2.29
2021 4106 7.709947 TCGTCTTCGTAAGTATCCAAACATAT 58.290 34.615 0.00 0.00 38.33 1.78
2022 4107 8.839343 TCGTCTTCGTAAGTATCCAAACATATA 58.161 33.333 0.00 0.00 38.33 0.86
2023 4108 9.622004 CGTCTTCGTAAGTATCCAAACATATAT 57.378 33.333 0.00 0.00 39.48 0.86
2032 4117 8.547967 AGTATCCAAACATATATAAAGCCGTG 57.452 34.615 0.00 0.00 0.00 4.94
2033 4118 5.682943 TCCAAACATATATAAAGCCGTGC 57.317 39.130 0.00 0.00 0.00 5.34
2034 4119 5.373222 TCCAAACATATATAAAGCCGTGCT 58.627 37.500 0.00 0.00 42.56 4.40
2054 4139 5.761165 GCTTAGCTAGCTTGTACTACTCT 57.239 43.478 24.88 0.00 46.77 3.24
2055 4140 5.516090 GCTTAGCTAGCTTGTACTACTCTG 58.484 45.833 24.88 1.29 46.77 3.35
2056 4141 5.297278 GCTTAGCTAGCTTGTACTACTCTGA 59.703 44.000 24.88 0.00 46.77 3.27
2057 4142 6.680874 TTAGCTAGCTTGTACTACTCTGAC 57.319 41.667 24.88 0.00 0.00 3.51
2058 4143 4.590918 AGCTAGCTTGTACTACTCTGACA 58.409 43.478 12.68 0.00 0.00 3.58
2059 4144 5.197451 AGCTAGCTTGTACTACTCTGACAT 58.803 41.667 12.68 0.00 0.00 3.06
2060 4145 5.067153 AGCTAGCTTGTACTACTCTGACATG 59.933 44.000 12.68 0.00 0.00 3.21
2061 4146 5.066634 GCTAGCTTGTACTACTCTGACATGA 59.933 44.000 7.70 0.00 0.00 3.07
2062 4147 5.317733 AGCTTGTACTACTCTGACATGAC 57.682 43.478 0.00 0.00 0.00 3.06
2063 4148 4.767409 AGCTTGTACTACTCTGACATGACA 59.233 41.667 0.00 0.00 0.00 3.58
2064 4149 5.420421 AGCTTGTACTACTCTGACATGACAT 59.580 40.000 0.00 0.00 0.00 3.06
2065 4150 5.518128 GCTTGTACTACTCTGACATGACATG 59.482 44.000 14.02 14.02 0.00 3.21
2066 4151 4.998788 TGTACTACTCTGACATGACATGC 58.001 43.478 15.49 8.84 0.00 4.06
2067 4152 3.156511 ACTACTCTGACATGACATGCG 57.843 47.619 15.49 4.67 0.00 4.73
2068 4153 2.493675 ACTACTCTGACATGACATGCGT 59.506 45.455 15.49 7.54 0.00 5.24
2069 4154 2.462456 ACTCTGACATGACATGCGTT 57.538 45.000 15.49 0.00 0.00 4.84
2070 4155 2.071540 ACTCTGACATGACATGCGTTG 58.928 47.619 15.49 5.15 0.00 4.10
2071 4156 2.071540 CTCTGACATGACATGCGTTGT 58.928 47.619 15.49 0.00 42.79 3.32
2072 4157 1.799994 TCTGACATGACATGCGTTGTG 59.200 47.619 15.49 1.02 39.18 3.33
2073 4158 1.532437 CTGACATGACATGCGTTGTGT 59.468 47.619 15.49 0.00 39.18 3.72
2074 4159 2.736192 CTGACATGACATGCGTTGTGTA 59.264 45.455 15.49 0.00 39.18 2.90
2075 4160 2.478514 TGACATGACATGCGTTGTGTAC 59.521 45.455 15.49 0.00 39.18 2.90
2083 4168 3.625232 CGTTGTGTACGTGCAGCT 58.375 55.556 6.58 0.00 45.14 4.24
2084 4169 1.201578 CGTTGTGTACGTGCAGCTG 59.798 57.895 10.11 10.11 45.14 4.24
2085 4170 1.569493 GTTGTGTACGTGCAGCTGG 59.431 57.895 17.12 0.73 0.00 4.85
2086 4171 1.596752 TTGTGTACGTGCAGCTGGG 60.597 57.895 17.12 0.00 0.00 4.45
2087 4172 2.030562 GTGTACGTGCAGCTGGGT 59.969 61.111 17.12 0.00 0.00 4.51
2088 4173 2.030412 TGTACGTGCAGCTGGGTG 59.970 61.111 17.12 0.00 0.00 4.61
2089 4174 2.742372 GTACGTGCAGCTGGGTGG 60.742 66.667 17.12 0.00 0.00 4.61
2090 4175 4.697756 TACGTGCAGCTGGGTGGC 62.698 66.667 17.12 0.00 0.00 5.01
2095 4180 4.496336 GCAGCTGGGTGGCCCTAG 62.496 72.222 17.12 0.00 45.70 3.02
2099 4184 3.801997 CTGGGTGGCCCTAGCTGG 61.802 72.222 0.00 0.00 45.70 4.85
2109 4194 3.306902 CCTAGCTGGGAGGTGAAGA 57.693 57.895 11.42 0.00 0.00 2.87
2110 4195 1.799933 CCTAGCTGGGAGGTGAAGAT 58.200 55.000 11.42 0.00 0.00 2.40
2111 4196 1.415659 CCTAGCTGGGAGGTGAAGATG 59.584 57.143 11.42 0.00 0.00 2.90
2112 4197 1.415659 CTAGCTGGGAGGTGAAGATGG 59.584 57.143 0.00 0.00 0.00 3.51
2113 4198 1.225704 GCTGGGAGGTGAAGATGGG 59.774 63.158 0.00 0.00 0.00 4.00
2114 4199 1.918253 CTGGGAGGTGAAGATGGGG 59.082 63.158 0.00 0.00 0.00 4.96
2115 4200 2.276309 CTGGGAGGTGAAGATGGGGC 62.276 65.000 0.00 0.00 0.00 5.80
2116 4201 2.190578 GGAGGTGAAGATGGGGCG 59.809 66.667 0.00 0.00 0.00 6.13
2117 4202 2.190578 GAGGTGAAGATGGGGCGG 59.809 66.667 0.00 0.00 0.00 6.13
2118 4203 2.285368 AGGTGAAGATGGGGCGGA 60.285 61.111 0.00 0.00 0.00 5.54
2119 4204 2.190578 GGTGAAGATGGGGCGGAG 59.809 66.667 0.00 0.00 0.00 4.63
2120 4205 2.367202 GGTGAAGATGGGGCGGAGA 61.367 63.158 0.00 0.00 0.00 3.71
2121 4206 1.144936 GTGAAGATGGGGCGGAGAG 59.855 63.158 0.00 0.00 0.00 3.20
2122 4207 1.001631 TGAAGATGGGGCGGAGAGA 59.998 57.895 0.00 0.00 0.00 3.10
2123 4208 1.330655 TGAAGATGGGGCGGAGAGAC 61.331 60.000 0.00 0.00 0.00 3.36
2124 4209 1.002274 AAGATGGGGCGGAGAGACT 59.998 57.895 0.00 0.00 0.00 3.24
2125 4210 1.045911 AAGATGGGGCGGAGAGACTC 61.046 60.000 0.00 0.00 0.00 3.36
2126 4211 2.835431 ATGGGGCGGAGAGACTCG 60.835 66.667 0.00 0.00 0.00 4.18
2127 4212 3.360423 ATGGGGCGGAGAGACTCGA 62.360 63.158 0.00 0.00 0.00 4.04
2128 4213 3.519930 GGGGCGGAGAGACTCGAC 61.520 72.222 0.00 0.00 0.00 4.20
2130 4215 2.750637 GGCGGAGAGACTCGACCA 60.751 66.667 17.39 0.00 0.00 4.02
2131 4216 2.486042 GCGGAGAGACTCGACCAC 59.514 66.667 17.39 7.83 0.00 4.16
2132 4217 2.785921 CGGAGAGACTCGACCACG 59.214 66.667 17.39 7.43 41.26 4.94
2133 4218 2.751913 CGGAGAGACTCGACCACGG 61.752 68.421 17.39 3.07 40.21 4.94
2134 4219 2.486042 GAGAGACTCGACCACGGC 59.514 66.667 0.00 0.00 40.21 5.68
2135 4220 3.384014 GAGAGACTCGACCACGGCG 62.384 68.421 4.80 4.80 40.21 6.46
2136 4221 3.429141 GAGACTCGACCACGGCGA 61.429 66.667 16.62 0.00 40.21 5.54
2141 4226 4.415332 TCGACCACGGCGAGCTTC 62.415 66.667 16.62 3.87 40.21 3.86
2142 4227 4.717629 CGACCACGGCGAGCTTCA 62.718 66.667 16.62 0.00 35.72 3.02
2143 4228 2.357034 GACCACGGCGAGCTTCAA 60.357 61.111 16.62 0.00 0.00 2.69
2144 4229 2.665185 ACCACGGCGAGCTTCAAC 60.665 61.111 16.62 0.00 0.00 3.18
2145 4230 3.777925 CCACGGCGAGCTTCAACG 61.778 66.667 16.62 0.00 0.00 4.10
2146 4231 3.777925 CACGGCGAGCTTCAACGG 61.778 66.667 16.62 0.00 0.00 4.44
2161 4246 3.118454 CGGCGCCGAGAACAACAT 61.118 61.111 44.86 0.00 42.83 2.71
2162 4247 2.785258 GGCGCCGAGAACAACATC 59.215 61.111 12.58 0.00 0.00 3.06
2163 4248 2.750888 GGCGCCGAGAACAACATCC 61.751 63.158 12.58 0.00 0.00 3.51
2164 4249 2.750888 GCGCCGAGAACAACATCCC 61.751 63.158 0.00 0.00 0.00 3.85
2165 4250 2.452813 CGCCGAGAACAACATCCCG 61.453 63.158 0.00 0.00 0.00 5.14
2166 4251 2.750888 GCCGAGAACAACATCCCGC 61.751 63.158 0.00 0.00 0.00 6.13
2167 4252 2.106683 CCGAGAACAACATCCCGCC 61.107 63.158 0.00 0.00 0.00 6.13
2168 4253 2.452813 CGAGAACAACATCCCGCCG 61.453 63.158 0.00 0.00 0.00 6.46
2169 4254 2.746277 AGAACAACATCCCGCCGC 60.746 61.111 0.00 0.00 0.00 6.53
2170 4255 3.810896 GAACAACATCCCGCCGCC 61.811 66.667 0.00 0.00 0.00 6.13
2193 4278 4.090588 CGGGGCTCGCCAACCTTA 62.091 66.667 10.51 0.00 37.98 2.69
2194 4279 2.437895 GGGGCTCGCCAACCTTAC 60.438 66.667 10.51 0.00 37.98 2.34
2195 4280 2.818274 GGGCTCGCCAACCTTACG 60.818 66.667 10.51 0.00 37.98 3.18
2196 4281 2.047560 GGCTCGCCAACCTTACGT 60.048 61.111 2.41 0.00 35.81 3.57
2197 4282 2.098831 GGCTCGCCAACCTTACGTC 61.099 63.158 2.41 0.00 35.81 4.34
2198 4283 2.098831 GCTCGCCAACCTTACGTCC 61.099 63.158 0.00 0.00 0.00 4.79
2199 4284 1.447314 CTCGCCAACCTTACGTCCC 60.447 63.158 0.00 0.00 0.00 4.46
2200 4285 1.885163 CTCGCCAACCTTACGTCCCT 61.885 60.000 0.00 0.00 0.00 4.20
2201 4286 1.447314 CGCCAACCTTACGTCCCTC 60.447 63.158 0.00 0.00 0.00 4.30
2202 4287 1.885163 CGCCAACCTTACGTCCCTCT 61.885 60.000 0.00 0.00 0.00 3.69
2203 4288 0.323957 GCCAACCTTACGTCCCTCTT 59.676 55.000 0.00 0.00 0.00 2.85
2204 4289 1.675116 GCCAACCTTACGTCCCTCTTC 60.675 57.143 0.00 0.00 0.00 2.87
2205 4290 1.403780 CCAACCTTACGTCCCTCTTCG 60.404 57.143 0.00 0.00 0.00 3.79
2206 4291 0.245813 AACCTTACGTCCCTCTTCGC 59.754 55.000 0.00 0.00 0.00 4.70
2207 4292 1.141234 CCTTACGTCCCTCTTCGCC 59.859 63.158 0.00 0.00 0.00 5.54
2208 4293 1.226603 CTTACGTCCCTCTTCGCCG 60.227 63.158 0.00 0.00 0.00 6.46
2209 4294 1.930908 CTTACGTCCCTCTTCGCCGT 61.931 60.000 0.00 0.00 35.68 5.68
2210 4295 2.203972 TTACGTCCCTCTTCGCCGTG 62.204 60.000 0.00 0.00 33.32 4.94
2212 4297 4.373116 GTCCCTCTTCGCCGTGCA 62.373 66.667 0.00 0.00 0.00 4.57
2213 4298 4.069232 TCCCTCTTCGCCGTGCAG 62.069 66.667 0.00 0.00 0.00 4.41
2234 4319 2.035530 GGCTCTCCCAGAAAGACATG 57.964 55.000 0.00 0.00 0.00 3.21
2235 4320 1.407989 GGCTCTCCCAGAAAGACATGG 60.408 57.143 0.00 0.00 36.27 3.66
2236 4321 1.280421 GCTCTCCCAGAAAGACATGGT 59.720 52.381 0.00 0.00 34.58 3.55
2237 4322 2.679349 GCTCTCCCAGAAAGACATGGTC 60.679 54.545 0.00 0.00 34.58 4.02
2238 4323 1.550524 TCTCCCAGAAAGACATGGTCG 59.449 52.381 0.00 0.00 37.67 4.79
2239 4324 0.036388 TCCCAGAAAGACATGGTCGC 60.036 55.000 0.00 0.00 37.67 5.19
2240 4325 0.321564 CCCAGAAAGACATGGTCGCA 60.322 55.000 0.00 0.00 37.67 5.10
2241 4326 0.798776 CCAGAAAGACATGGTCGCAC 59.201 55.000 0.00 0.00 37.67 5.34
2242 4327 1.609061 CCAGAAAGACATGGTCGCACT 60.609 52.381 0.00 0.00 37.67 4.40
2243 4328 1.728971 CAGAAAGACATGGTCGCACTC 59.271 52.381 0.00 0.00 37.67 3.51
2244 4329 1.344438 AGAAAGACATGGTCGCACTCA 59.656 47.619 0.00 0.00 37.67 3.41
2245 4330 1.728971 GAAAGACATGGTCGCACTCAG 59.271 52.381 0.00 0.00 37.67 3.35
2246 4331 0.036952 AAGACATGGTCGCACTCAGG 60.037 55.000 0.00 0.00 37.67 3.86
2247 4332 1.188219 AGACATGGTCGCACTCAGGT 61.188 55.000 0.00 0.00 37.67 4.00
2248 4333 1.004560 ACATGGTCGCACTCAGGTG 60.005 57.895 0.00 0.00 45.53 4.00
2249 4334 1.742880 CATGGTCGCACTCAGGTGG 60.743 63.158 0.00 0.00 43.18 4.61
2250 4335 2.217038 ATGGTCGCACTCAGGTGGT 61.217 57.895 0.00 0.00 43.18 4.16
2251 4336 0.902984 ATGGTCGCACTCAGGTGGTA 60.903 55.000 0.00 0.00 43.18 3.25
2252 4337 1.080025 GGTCGCACTCAGGTGGTAC 60.080 63.158 0.00 0.00 43.18 3.34
2253 4338 1.663739 GTCGCACTCAGGTGGTACA 59.336 57.895 0.00 0.00 43.18 2.90
2254 4339 0.246635 GTCGCACTCAGGTGGTACAT 59.753 55.000 0.00 0.00 44.52 2.29
2255 4340 1.475280 GTCGCACTCAGGTGGTACATA 59.525 52.381 0.00 0.00 44.52 2.29
2256 4341 2.100916 GTCGCACTCAGGTGGTACATAT 59.899 50.000 0.00 0.00 44.52 1.78
2257 4342 3.317149 GTCGCACTCAGGTGGTACATATA 59.683 47.826 0.00 0.00 44.52 0.86
2258 4343 4.022242 GTCGCACTCAGGTGGTACATATAT 60.022 45.833 0.00 0.00 44.52 0.86
2259 4344 5.182570 GTCGCACTCAGGTGGTACATATATA 59.817 44.000 0.00 0.00 44.52 0.86
2260 4345 5.182570 TCGCACTCAGGTGGTACATATATAC 59.817 44.000 0.00 0.00 44.52 1.47
2261 4346 5.048294 CGCACTCAGGTGGTACATATATACA 60.048 44.000 0.00 0.00 44.52 2.29
2262 4347 6.350194 CGCACTCAGGTGGTACATATATACAT 60.350 42.308 0.00 0.00 44.52 2.29
2512 4600 0.871722 CGGAGCCACAATTGAACGAA 59.128 50.000 13.59 0.00 0.00 3.85
2520 4608 4.667262 CCACAATTGAACGAAAACTGTGA 58.333 39.130 13.59 0.00 35.78 3.58
2558 4646 0.246635 ACTAACTCCGCGCAGTCAAT 59.753 50.000 1.61 0.00 0.00 2.57
2580 4668 5.678132 TTTCCATTATCACATGCGAGATG 57.322 39.130 0.00 0.00 0.00 2.90
2604 4692 2.159282 TCGAAGAGTGGCGAATAAGACC 60.159 50.000 0.00 0.00 33.04 3.85
2688 4776 3.584848 ACCAAGAACCTAACAGAGCTGAT 59.415 43.478 4.21 0.00 0.00 2.90
2748 4836 1.299541 CAAAGTTCAGTGCACCGTCT 58.700 50.000 14.63 4.42 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
569 579 0.894835 TGCAAGCATGTCTCCGTCTA 59.105 50.000 0.00 0.00 0.00 2.59
1789 3874 4.966005 CGAAGCAGTCGTGGAAGA 57.034 55.556 1.91 0.00 45.09 2.87
1797 3882 2.435059 GCCCTGGACGAAGCAGTC 60.435 66.667 0.00 0.00 40.25 3.51
1798 3883 2.925170 AGCCCTGGACGAAGCAGT 60.925 61.111 0.00 0.00 0.00 4.40
1799 3884 2.435586 CAGCCCTGGACGAAGCAG 60.436 66.667 0.00 0.00 0.00 4.24
1800 3885 3.241530 ACAGCCCTGGACGAAGCA 61.242 61.111 0.00 0.00 34.19 3.91
1801 3886 2.743928 CACAGCCCTGGACGAAGC 60.744 66.667 0.00 0.00 34.19 3.86
1802 3887 1.374758 GTCACAGCCCTGGACGAAG 60.375 63.158 0.00 0.00 34.19 3.79
1803 3888 2.741092 GTCACAGCCCTGGACGAA 59.259 61.111 0.00 0.00 34.19 3.85
1804 3889 3.680786 CGTCACAGCCCTGGACGA 61.681 66.667 22.96 6.78 46.80 4.20
1814 3899 4.731612 AGCAGCGAGGCGTCACAG 62.732 66.667 7.26 0.00 39.27 3.66
1851 3936 3.843240 GTTCTTCTCGCCGCGCAG 61.843 66.667 8.75 6.89 0.00 5.18
1859 3944 3.479269 GGCGTGGCGTTCTTCTCG 61.479 66.667 0.00 0.00 0.00 4.04
1860 3945 3.119096 GGGCGTGGCGTTCTTCTC 61.119 66.667 0.00 0.00 0.00 2.87
1861 3946 3.469863 TTGGGCGTGGCGTTCTTCT 62.470 57.895 0.00 0.00 0.00 2.85
1862 3947 2.975799 TTGGGCGTGGCGTTCTTC 60.976 61.111 0.00 0.00 0.00 2.87
1863 3948 3.284449 GTTGGGCGTGGCGTTCTT 61.284 61.111 0.00 0.00 0.00 2.52
1864 3949 4.555709 TGTTGGGCGTGGCGTTCT 62.556 61.111 0.00 0.00 0.00 3.01
1865 3950 2.615262 TTTTGTTGGGCGTGGCGTTC 62.615 55.000 0.00 0.00 0.00 3.95
1866 3951 2.227089 TTTTTGTTGGGCGTGGCGTT 62.227 50.000 0.00 0.00 0.00 4.84
1867 3952 2.711922 TTTTTGTTGGGCGTGGCGT 61.712 52.632 0.00 0.00 0.00 5.68
1868 3953 2.105128 TTTTTGTTGGGCGTGGCG 59.895 55.556 0.00 0.00 0.00 5.69
1869 3954 0.874175 GAGTTTTTGTTGGGCGTGGC 60.874 55.000 0.00 0.00 0.00 5.01
1870 3955 0.249280 GGAGTTTTTGTTGGGCGTGG 60.249 55.000 0.00 0.00 0.00 4.94
1871 3956 0.593773 CGGAGTTTTTGTTGGGCGTG 60.594 55.000 0.00 0.00 0.00 5.34
1872 3957 1.731093 CGGAGTTTTTGTTGGGCGT 59.269 52.632 0.00 0.00 0.00 5.68
1873 3958 1.660264 GCGGAGTTTTTGTTGGGCG 60.660 57.895 0.00 0.00 0.00 6.13
1874 3959 1.300620 GGCGGAGTTTTTGTTGGGC 60.301 57.895 0.00 0.00 0.00 5.36
1875 3960 0.031994 CTGGCGGAGTTTTTGTTGGG 59.968 55.000 0.00 0.00 0.00 4.12
1876 3961 1.001378 CTCTGGCGGAGTTTTTGTTGG 60.001 52.381 15.39 0.00 37.30 3.77
1877 3962 1.001378 CCTCTGGCGGAGTTTTTGTTG 60.001 52.381 21.38 0.26 40.30 3.33
1878 3963 1.318576 CCTCTGGCGGAGTTTTTGTT 58.681 50.000 21.38 0.00 40.30 2.83
1879 3964 0.537371 CCCTCTGGCGGAGTTTTTGT 60.537 55.000 21.38 0.00 40.30 2.83
1880 3965 0.537371 ACCCTCTGGCGGAGTTTTTG 60.537 55.000 21.38 6.11 40.30 2.44
1881 3966 0.185175 AACCCTCTGGCGGAGTTTTT 59.815 50.000 21.38 8.74 40.30 1.94
1882 3967 0.250770 GAACCCTCTGGCGGAGTTTT 60.251 55.000 21.38 13.52 40.30 2.43
1883 3968 1.375326 GAACCCTCTGGCGGAGTTT 59.625 57.895 21.38 13.86 40.30 2.66
1884 3969 2.943978 CGAACCCTCTGGCGGAGTT 61.944 63.158 21.38 11.31 40.30 3.01
1885 3970 3.382832 CGAACCCTCTGGCGGAGT 61.383 66.667 21.38 3.51 40.30 3.85
1886 3971 3.068691 TCGAACCCTCTGGCGGAG 61.069 66.667 16.65 16.65 41.51 4.63
1887 3972 3.068691 CTCGAACCCTCTGGCGGA 61.069 66.667 0.00 0.00 33.59 5.54
1888 3973 4.148825 CCTCGAACCCTCTGGCGG 62.149 72.222 0.00 0.00 33.59 6.13
1889 3974 3.358076 GACCTCGAACCCTCTGGCG 62.358 68.421 0.00 0.00 33.59 5.69
1890 3975 1.617947 ATGACCTCGAACCCTCTGGC 61.618 60.000 0.00 0.00 33.59 4.85
1891 3976 0.461961 GATGACCTCGAACCCTCTGG 59.538 60.000 0.00 0.00 37.80 3.86
1902 3987 2.278013 GACGGCGTCGATGACCTC 60.278 66.667 25.42 0.56 40.11 3.85
1903 3988 2.543687 CTTGACGGCGTCGATGACCT 62.544 60.000 31.90 0.00 40.11 3.85
1904 3989 2.126228 TTGACGGCGTCGATGACC 60.126 61.111 31.90 10.51 40.11 4.02
1905 3990 2.158959 CCTTGACGGCGTCGATGAC 61.159 63.158 31.90 11.26 40.11 3.06
1906 3991 2.180769 CCTTGACGGCGTCGATGA 59.819 61.111 31.90 14.39 40.11 2.92
1924 4009 4.052229 AACACTCCTCGACGGCCG 62.052 66.667 26.86 26.86 40.25 6.13
1925 4010 2.432628 CAACACTCCTCGACGGCC 60.433 66.667 0.00 0.00 0.00 6.13
1926 4011 1.733399 GACAACACTCCTCGACGGC 60.733 63.158 0.00 0.00 0.00 5.68
1927 4012 1.080705 GGACAACACTCCTCGACGG 60.081 63.158 0.00 0.00 0.00 4.79
1928 4013 1.080705 GGGACAACACTCCTCGACG 60.081 63.158 0.00 0.00 0.00 5.12
1929 4014 1.080705 CGGGACAACACTCCTCGAC 60.081 63.158 0.00 0.00 0.00 4.20
1930 4015 2.273179 CCGGGACAACACTCCTCGA 61.273 63.158 0.00 0.00 0.00 4.04
1931 4016 2.261671 CCGGGACAACACTCCTCG 59.738 66.667 0.00 0.00 0.00 4.63
1932 4017 2.663196 CCCGGGACAACACTCCTC 59.337 66.667 18.48 0.00 0.00 3.71
1933 4018 2.928396 CCCCGGGACAACACTCCT 60.928 66.667 26.32 0.00 0.00 3.69
1934 4019 3.246880 ACCCCGGGACAACACTCC 61.247 66.667 26.32 0.00 0.00 3.85
1935 4020 2.346365 GACCCCGGGACAACACTC 59.654 66.667 26.32 0.14 0.00 3.51
1936 4021 3.622826 CGACCCCGGGACAACACT 61.623 66.667 26.32 0.00 0.00 3.55
1937 4022 3.871248 GACGACCCCGGGACAACAC 62.871 68.421 26.32 4.82 40.78 3.32
1938 4023 3.618750 GACGACCCCGGGACAACA 61.619 66.667 26.32 0.00 40.78 3.33
1939 4024 3.292500 GAGACGACCCCGGGACAAC 62.293 68.421 26.32 9.35 40.78 3.32
1940 4025 2.993264 GAGACGACCCCGGGACAA 60.993 66.667 26.32 0.00 40.78 3.18
1942 4027 4.755507 AGGAGACGACCCCGGGAC 62.756 72.222 26.32 15.08 40.78 4.46
1943 4028 4.753662 CAGGAGACGACCCCGGGA 62.754 72.222 26.32 0.00 40.78 5.14
1952 4037 4.498520 ATGTCGGCGCAGGAGACG 62.499 66.667 10.83 1.64 45.53 4.18
1953 4038 2.583593 GATGTCGGCGCAGGAGAC 60.584 66.667 10.83 13.31 35.61 3.36
1954 4039 3.838271 GGATGTCGGCGCAGGAGA 61.838 66.667 10.83 4.64 0.00 3.71
1955 4040 3.781770 GAGGATGTCGGCGCAGGAG 62.782 68.421 10.83 0.00 0.00 3.69
1956 4041 3.838271 GAGGATGTCGGCGCAGGA 61.838 66.667 10.83 2.24 0.00 3.86
1965 4050 2.663188 GGCGATGGCGAGGATGTC 60.663 66.667 0.00 0.00 41.24 3.06
1976 4061 4.637489 CTCTCCTCGGCGGCGATG 62.637 72.222 34.71 30.28 0.00 3.84
1980 4065 4.959596 GATGCTCTCCTCGGCGGC 62.960 72.222 7.21 0.00 0.00 6.53
1981 4066 4.637489 CGATGCTCTCCTCGGCGG 62.637 72.222 7.21 0.00 0.00 6.13
1982 4067 3.815569 GACGATGCTCTCCTCGGCG 62.816 68.421 0.00 0.00 39.16 6.46
1983 4068 2.010582 AAGACGATGCTCTCCTCGGC 62.011 60.000 0.00 0.00 43.28 5.54
1984 4069 0.030101 GAAGACGATGCTCTCCTCGG 59.970 60.000 0.00 0.00 39.16 4.63
1985 4070 0.316607 CGAAGACGATGCTCTCCTCG 60.317 60.000 0.00 0.00 42.66 4.63
1986 4071 0.736053 ACGAAGACGATGCTCTCCTC 59.264 55.000 0.00 0.00 42.66 3.71
1987 4072 2.039818 TACGAAGACGATGCTCTCCT 57.960 50.000 0.00 0.00 42.66 3.69
1988 4073 2.097791 ACTTACGAAGACGATGCTCTCC 59.902 50.000 0.00 0.00 42.66 3.71
1989 4074 3.408288 ACTTACGAAGACGATGCTCTC 57.592 47.619 0.00 0.00 42.66 3.20
1990 4075 4.023878 GGATACTTACGAAGACGATGCTCT 60.024 45.833 0.00 0.00 42.66 4.09
1991 4076 4.220572 GGATACTTACGAAGACGATGCTC 58.779 47.826 0.00 0.00 42.66 4.26
1992 4077 3.630769 TGGATACTTACGAAGACGATGCT 59.369 43.478 0.00 0.00 39.48 3.79
1993 4078 3.961182 TGGATACTTACGAAGACGATGC 58.039 45.455 0.00 0.00 39.48 3.91
1994 4079 5.803461 TGTTTGGATACTTACGAAGACGATG 59.197 40.000 0.00 0.00 39.48 3.84
1995 4080 5.957798 TGTTTGGATACTTACGAAGACGAT 58.042 37.500 0.00 0.00 39.48 3.73
1996 4081 5.375417 TGTTTGGATACTTACGAAGACGA 57.625 39.130 0.00 0.00 39.48 4.20
1997 4082 7.925703 ATATGTTTGGATACTTACGAAGACG 57.074 36.000 0.00 0.00 41.24 4.18
2006 4091 8.999431 CACGGCTTTATATATGTTTGGATACTT 58.001 33.333 0.00 0.00 37.61 2.24
2007 4092 7.119262 GCACGGCTTTATATATGTTTGGATACT 59.881 37.037 0.00 0.00 37.61 2.12
2008 4093 7.119262 AGCACGGCTTTATATATGTTTGGATAC 59.881 37.037 0.00 0.00 33.89 2.24
2009 4094 7.165485 AGCACGGCTTTATATATGTTTGGATA 58.835 34.615 0.00 0.00 33.89 2.59
2010 4095 6.003950 AGCACGGCTTTATATATGTTTGGAT 58.996 36.000 0.00 0.00 33.89 3.41
2011 4096 5.373222 AGCACGGCTTTATATATGTTTGGA 58.627 37.500 0.00 0.00 33.89 3.53
2012 4097 5.689383 AGCACGGCTTTATATATGTTTGG 57.311 39.130 0.00 0.00 33.89 3.28
2033 4118 6.316640 TGTCAGAGTAGTACAAGCTAGCTAAG 59.683 42.308 19.70 16.20 0.00 2.18
2034 4119 6.178324 TGTCAGAGTAGTACAAGCTAGCTAA 58.822 40.000 19.70 3.77 0.00 3.09
2035 4120 5.742063 TGTCAGAGTAGTACAAGCTAGCTA 58.258 41.667 19.70 0.00 0.00 3.32
2036 4121 4.590918 TGTCAGAGTAGTACAAGCTAGCT 58.409 43.478 12.68 12.68 0.00 3.32
2037 4122 4.966965 TGTCAGAGTAGTACAAGCTAGC 57.033 45.455 6.62 6.62 0.00 3.42
2038 4123 6.094186 TGTCATGTCAGAGTAGTACAAGCTAG 59.906 42.308 2.52 0.00 0.00 3.42
2039 4124 5.944007 TGTCATGTCAGAGTAGTACAAGCTA 59.056 40.000 2.52 0.00 0.00 3.32
2040 4125 4.767409 TGTCATGTCAGAGTAGTACAAGCT 59.233 41.667 2.52 0.00 0.00 3.74
2041 4126 5.060662 TGTCATGTCAGAGTAGTACAAGC 57.939 43.478 2.52 0.00 0.00 4.01
2042 4127 5.518128 GCATGTCATGTCAGAGTAGTACAAG 59.482 44.000 14.26 0.00 0.00 3.16
2043 4128 5.410924 GCATGTCATGTCAGAGTAGTACAA 58.589 41.667 14.26 0.00 0.00 2.41
2044 4129 4.438744 CGCATGTCATGTCAGAGTAGTACA 60.439 45.833 14.26 0.00 0.00 2.90
2045 4130 4.038361 CGCATGTCATGTCAGAGTAGTAC 58.962 47.826 14.26 0.00 0.00 2.73
2046 4131 3.694566 ACGCATGTCATGTCAGAGTAGTA 59.305 43.478 14.26 0.00 0.00 1.82
2047 4132 2.493675 ACGCATGTCATGTCAGAGTAGT 59.506 45.455 14.26 0.56 0.00 2.73
2048 4133 3.156511 ACGCATGTCATGTCAGAGTAG 57.843 47.619 14.26 0.03 0.00 2.57
2049 4134 3.253230 CAACGCATGTCATGTCAGAGTA 58.747 45.455 14.26 0.00 0.00 2.59
2050 4135 2.071540 CAACGCATGTCATGTCAGAGT 58.928 47.619 14.26 4.84 0.00 3.24
2051 4136 2.071540 ACAACGCATGTCATGTCAGAG 58.928 47.619 14.26 4.25 37.96 3.35
2052 4137 1.799994 CACAACGCATGTCATGTCAGA 59.200 47.619 14.26 0.00 41.46 3.27
2053 4138 1.532437 ACACAACGCATGTCATGTCAG 59.468 47.619 14.26 8.68 41.46 3.51
2054 4139 1.592064 ACACAACGCATGTCATGTCA 58.408 45.000 14.26 0.00 41.46 3.58
2055 4140 2.472235 CGTACACAACGCATGTCATGTC 60.472 50.000 14.26 6.02 46.10 3.06
2056 4141 1.459209 CGTACACAACGCATGTCATGT 59.541 47.619 14.26 0.00 46.10 3.21
2057 4142 2.143621 CGTACACAACGCATGTCATG 57.856 50.000 8.56 8.56 46.10 3.07
2067 4152 1.569493 CCAGCTGCACGTACACAAC 59.431 57.895 8.66 0.00 0.00 3.32
2068 4153 1.596752 CCCAGCTGCACGTACACAA 60.597 57.895 8.66 0.00 0.00 3.33
2069 4154 2.030412 CCCAGCTGCACGTACACA 59.970 61.111 8.66 0.00 0.00 3.72
2070 4155 2.030562 ACCCAGCTGCACGTACAC 59.969 61.111 8.66 0.00 0.00 2.90
2071 4156 2.030412 CACCCAGCTGCACGTACA 59.970 61.111 8.66 0.00 0.00 2.90
2072 4157 2.742372 CCACCCAGCTGCACGTAC 60.742 66.667 8.66 0.00 0.00 3.67
2073 4158 4.697756 GCCACCCAGCTGCACGTA 62.698 66.667 8.66 0.00 0.00 3.57
2091 4176 1.415659 CATCTTCACCTCCCAGCTAGG 59.584 57.143 0.00 0.00 40.20 3.02
2092 4177 1.415659 CCATCTTCACCTCCCAGCTAG 59.584 57.143 0.00 0.00 0.00 3.42
2093 4178 1.500474 CCATCTTCACCTCCCAGCTA 58.500 55.000 0.00 0.00 0.00 3.32
2094 4179 1.277580 CCCATCTTCACCTCCCAGCT 61.278 60.000 0.00 0.00 0.00 4.24
2095 4180 1.225704 CCCATCTTCACCTCCCAGC 59.774 63.158 0.00 0.00 0.00 4.85
2096 4181 1.918253 CCCCATCTTCACCTCCCAG 59.082 63.158 0.00 0.00 0.00 4.45
2097 4182 2.308722 GCCCCATCTTCACCTCCCA 61.309 63.158 0.00 0.00 0.00 4.37
2098 4183 2.597903 GCCCCATCTTCACCTCCC 59.402 66.667 0.00 0.00 0.00 4.30
2099 4184 2.190578 CGCCCCATCTTCACCTCC 59.809 66.667 0.00 0.00 0.00 4.30
2100 4185 2.190578 CCGCCCCATCTTCACCTC 59.809 66.667 0.00 0.00 0.00 3.85
2101 4186 2.285368 TCCGCCCCATCTTCACCT 60.285 61.111 0.00 0.00 0.00 4.00
2102 4187 2.190578 CTCCGCCCCATCTTCACC 59.809 66.667 0.00 0.00 0.00 4.02
2103 4188 1.144936 CTCTCCGCCCCATCTTCAC 59.855 63.158 0.00 0.00 0.00 3.18
2104 4189 1.001631 TCTCTCCGCCCCATCTTCA 59.998 57.895 0.00 0.00 0.00 3.02
2105 4190 1.045911 AGTCTCTCCGCCCCATCTTC 61.046 60.000 0.00 0.00 0.00 2.87
2106 4191 1.002274 AGTCTCTCCGCCCCATCTT 59.998 57.895 0.00 0.00 0.00 2.40
2107 4192 1.456705 GAGTCTCTCCGCCCCATCT 60.457 63.158 0.00 0.00 0.00 2.90
2108 4193 2.851071 CGAGTCTCTCCGCCCCATC 61.851 68.421 0.00 0.00 0.00 3.51
2109 4194 2.835431 CGAGTCTCTCCGCCCCAT 60.835 66.667 0.00 0.00 0.00 4.00
2110 4195 4.043100 TCGAGTCTCTCCGCCCCA 62.043 66.667 0.00 0.00 0.00 4.96
2111 4196 3.519930 GTCGAGTCTCTCCGCCCC 61.520 72.222 0.00 0.00 0.00 5.80
2112 4197 3.519930 GGTCGAGTCTCTCCGCCC 61.520 72.222 0.00 0.00 0.00 6.13
2113 4198 2.750637 TGGTCGAGTCTCTCCGCC 60.751 66.667 0.00 0.00 0.00 6.13
2114 4199 2.486042 GTGGTCGAGTCTCTCCGC 59.514 66.667 0.00 3.85 0.00 5.54
2115 4200 2.751913 CCGTGGTCGAGTCTCTCCG 61.752 68.421 0.00 0.00 39.71 4.63
2116 4201 3.053849 GCCGTGGTCGAGTCTCTCC 62.054 68.421 0.00 1.52 39.71 3.71
2117 4202 2.486042 GCCGTGGTCGAGTCTCTC 59.514 66.667 0.00 0.00 39.71 3.20
2118 4203 3.432588 CGCCGTGGTCGAGTCTCT 61.433 66.667 0.00 0.00 39.71 3.10
2119 4204 3.384014 CTCGCCGTGGTCGAGTCTC 62.384 68.421 18.38 0.00 45.86 3.36
2120 4205 3.432588 CTCGCCGTGGTCGAGTCT 61.433 66.667 18.38 0.00 45.86 3.24
2124 4209 4.415332 GAAGCTCGCCGTGGTCGA 62.415 66.667 0.00 5.55 39.71 4.20
2125 4210 4.717629 TGAAGCTCGCCGTGGTCG 62.718 66.667 0.00 0.00 0.00 4.79
2126 4211 2.357034 TTGAAGCTCGCCGTGGTC 60.357 61.111 0.00 0.00 0.00 4.02
2127 4212 2.665185 GTTGAAGCTCGCCGTGGT 60.665 61.111 0.00 0.00 0.00 4.16
2128 4213 3.777925 CGTTGAAGCTCGCCGTGG 61.778 66.667 0.00 0.00 0.00 4.94
2129 4214 3.777925 CCGTTGAAGCTCGCCGTG 61.778 66.667 0.00 0.00 0.00 4.94
2138 4223 2.736995 TTCTCGGCGCCGTTGAAG 60.737 61.111 44.16 34.03 40.74 3.02
2139 4224 3.039588 GTTCTCGGCGCCGTTGAA 61.040 61.111 44.16 39.35 40.74 2.69
2140 4225 3.793775 TTGTTCTCGGCGCCGTTGA 62.794 57.895 44.16 36.89 40.74 3.18
2141 4226 3.342627 TTGTTCTCGGCGCCGTTG 61.343 61.111 44.16 35.47 40.74 4.10
2142 4227 3.343421 GTTGTTCTCGGCGCCGTT 61.343 61.111 44.16 0.00 40.74 4.44
2143 4228 3.876589 ATGTTGTTCTCGGCGCCGT 62.877 57.895 44.16 22.53 40.74 5.68
2144 4229 3.083600 GATGTTGTTCTCGGCGCCG 62.084 63.158 42.13 42.13 41.35 6.46
2145 4230 2.750888 GGATGTTGTTCTCGGCGCC 61.751 63.158 19.07 19.07 0.00 6.53
2146 4231 2.750888 GGGATGTTGTTCTCGGCGC 61.751 63.158 0.00 0.00 0.00 6.53
2147 4232 2.452813 CGGGATGTTGTTCTCGGCG 61.453 63.158 0.00 0.00 35.95 6.46
2148 4233 2.750888 GCGGGATGTTGTTCTCGGC 61.751 63.158 0.00 0.00 40.01 5.54
2149 4234 2.106683 GGCGGGATGTTGTTCTCGG 61.107 63.158 0.00 0.00 40.01 4.63
2150 4235 2.452813 CGGCGGGATGTTGTTCTCG 61.453 63.158 0.00 0.00 42.56 4.04
2151 4236 2.750888 GCGGCGGGATGTTGTTCTC 61.751 63.158 9.78 0.00 0.00 2.87
2152 4237 2.746277 GCGGCGGGATGTTGTTCT 60.746 61.111 9.78 0.00 0.00 3.01
2153 4238 3.810896 GGCGGCGGGATGTTGTTC 61.811 66.667 9.78 0.00 0.00 3.18
2176 4261 4.090588 TAAGGTTGGCGAGCCCCG 62.091 66.667 12.05 0.00 42.21 5.73
2177 4262 2.437895 GTAAGGTTGGCGAGCCCC 60.438 66.667 12.05 6.48 34.56 5.80
2178 4263 2.818274 CGTAAGGTTGGCGAGCCC 60.818 66.667 12.05 0.00 34.56 5.19
2179 4264 2.047560 ACGTAAGGTTGGCGAGCC 60.048 61.111 7.26 7.26 46.39 4.70
2180 4265 2.098831 GGACGTAAGGTTGGCGAGC 61.099 63.158 0.00 0.00 46.39 5.03
2181 4266 1.447314 GGGACGTAAGGTTGGCGAG 60.447 63.158 0.00 0.00 46.39 5.03
2182 4267 1.880819 GAGGGACGTAAGGTTGGCGA 61.881 60.000 0.00 0.00 46.39 5.54
2183 4268 1.447314 GAGGGACGTAAGGTTGGCG 60.447 63.158 0.00 0.00 46.39 5.69
2184 4269 0.323957 AAGAGGGACGTAAGGTTGGC 59.676 55.000 0.00 0.00 46.39 4.52
2185 4270 1.403780 CGAAGAGGGACGTAAGGTTGG 60.404 57.143 0.00 0.00 46.39 3.77
2186 4271 1.992170 CGAAGAGGGACGTAAGGTTG 58.008 55.000 0.00 0.00 46.39 3.77
2187 4272 0.245813 GCGAAGAGGGACGTAAGGTT 59.754 55.000 0.00 0.00 46.39 3.50
2188 4273 1.602327 GGCGAAGAGGGACGTAAGGT 61.602 60.000 0.00 0.00 46.39 3.50
2189 4274 1.141234 GGCGAAGAGGGACGTAAGG 59.859 63.158 0.00 0.00 46.39 2.69
2191 4276 1.973281 ACGGCGAAGAGGGACGTAA 60.973 57.895 16.62 0.00 35.85 3.18
2192 4277 2.360350 ACGGCGAAGAGGGACGTA 60.360 61.111 16.62 0.00 35.85 3.57
2193 4278 4.052229 CACGGCGAAGAGGGACGT 62.052 66.667 16.62 0.00 38.43 4.34
2195 4280 4.373116 TGCACGGCGAAGAGGGAC 62.373 66.667 16.62 0.00 0.00 4.46
2196 4281 4.069232 CTGCACGGCGAAGAGGGA 62.069 66.667 16.62 0.00 0.00 4.20
2215 4300 1.407989 CCATGTCTTTCTGGGAGAGCC 60.408 57.143 0.00 0.00 0.00 4.70
2216 4301 1.280421 ACCATGTCTTTCTGGGAGAGC 59.720 52.381 0.00 0.00 36.82 4.09
2217 4302 2.417924 CGACCATGTCTTTCTGGGAGAG 60.418 54.545 0.00 0.00 36.82 3.20
2218 4303 1.550524 CGACCATGTCTTTCTGGGAGA 59.449 52.381 0.00 0.00 36.82 3.71
2219 4304 2.009042 GCGACCATGTCTTTCTGGGAG 61.009 57.143 0.00 0.00 36.82 4.30
2220 4305 0.036388 GCGACCATGTCTTTCTGGGA 60.036 55.000 0.00 0.00 36.82 4.37
2221 4306 0.321564 TGCGACCATGTCTTTCTGGG 60.322 55.000 0.00 0.00 36.82 4.45
2222 4307 0.798776 GTGCGACCATGTCTTTCTGG 59.201 55.000 0.00 0.00 38.55 3.86
2223 4308 1.728971 GAGTGCGACCATGTCTTTCTG 59.271 52.381 0.00 0.00 0.00 3.02
2224 4309 1.344438 TGAGTGCGACCATGTCTTTCT 59.656 47.619 0.00 0.00 0.00 2.52
2225 4310 1.728971 CTGAGTGCGACCATGTCTTTC 59.271 52.381 0.00 0.00 0.00 2.62
2226 4311 1.609061 CCTGAGTGCGACCATGTCTTT 60.609 52.381 0.00 0.00 0.00 2.52
2227 4312 0.036952 CCTGAGTGCGACCATGTCTT 60.037 55.000 0.00 0.00 0.00 3.01
2228 4313 1.188219 ACCTGAGTGCGACCATGTCT 61.188 55.000 0.00 0.00 0.00 3.41
2229 4314 1.016130 CACCTGAGTGCGACCATGTC 61.016 60.000 0.00 0.00 37.14 3.06
2230 4315 1.004560 CACCTGAGTGCGACCATGT 60.005 57.895 0.00 0.00 37.14 3.21
2231 4316 1.742880 CCACCTGAGTGCGACCATG 60.743 63.158 0.00 0.00 43.09 3.66
2232 4317 0.902984 TACCACCTGAGTGCGACCAT 60.903 55.000 0.00 0.00 43.09 3.55
2233 4318 1.532078 TACCACCTGAGTGCGACCA 60.532 57.895 0.00 0.00 43.09 4.02
2234 4319 1.080025 GTACCACCTGAGTGCGACC 60.080 63.158 0.00 0.00 43.09 4.79
2235 4320 0.246635 ATGTACCACCTGAGTGCGAC 59.753 55.000 0.00 0.00 43.09 5.19
2236 4321 1.842052 TATGTACCACCTGAGTGCGA 58.158 50.000 0.00 0.00 43.09 5.10
2237 4322 2.890808 ATATGTACCACCTGAGTGCG 57.109 50.000 0.00 0.00 43.09 5.34
2238 4323 6.340962 TGTATATATGTACCACCTGAGTGC 57.659 41.667 7.12 0.00 43.09 4.40
2239 4324 9.778741 AAAATGTATATATGTACCACCTGAGTG 57.221 33.333 7.12 0.00 44.12 3.51
2280 4365 8.127954 GCTCTTATTTGAATAAAAGCTCTCTGG 58.872 37.037 12.35 0.00 40.24 3.86
2405 4490 2.588856 AAACCTACCGGCGCATCTCC 62.589 60.000 10.83 0.00 0.00 3.71
2512 4600 2.167693 TCTGGAACACTCGTCACAGTTT 59.832 45.455 0.00 0.00 33.10 2.66
2520 4608 1.067212 GTGACACTCTGGAACACTCGT 59.933 52.381 0.00 0.00 0.00 4.18
2558 4646 4.023792 GCATCTCGCATGTGATAATGGAAA 60.024 41.667 22.94 0.00 41.79 3.13
2580 4668 0.102481 TATTCGCCACTCTTCGAGGC 59.898 55.000 2.62 2.62 44.84 4.70
2604 4692 1.866063 GCTTTATCTCTGCGAGACGGG 60.866 57.143 9.85 3.95 41.76 5.28
2652 4740 5.070001 GGTTCTTGGTGCAAGCCATATATA 58.930 41.667 0.00 0.00 40.84 0.86
2688 4776 3.458163 GGTGTCGCCCGATCCTCA 61.458 66.667 0.00 0.00 0.00 3.86
2718 4806 1.349026 CTGAACTTTGCTGAGGGGAGA 59.651 52.381 0.00 0.00 0.00 3.71
2720 4808 1.140312 ACTGAACTTTGCTGAGGGGA 58.860 50.000 0.00 0.00 0.00 4.81
2748 4836 6.619744 TGATACTACGGTAAAAATCACGACA 58.380 36.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.