Multiple sequence alignment - TraesCS4B01G118800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G118800 chr4B 100.000 2886 0 0 1 2886 139139782 139136897 0.000000e+00 5330.0
1 TraesCS4B01G118800 chr4D 94.806 2445 80 22 476 2886 97421460 97419029 0.000000e+00 3768.0
2 TraesCS4B01G118800 chr4D 92.994 314 19 1 143 453 384483239 384482926 3.390000e-124 455.0
3 TraesCS4B01G118800 chr4A 92.815 2366 109 25 481 2798 478742259 478744611 0.000000e+00 3371.0
4 TraesCS4B01G118800 chr4A 93.506 308 16 3 147 451 153665653 153665347 3.390000e-124 455.0
5 TraesCS4B01G118800 chr4A 87.838 148 11 3 1 147 478741947 478742088 1.780000e-37 167.0
6 TraesCS4B01G118800 chr4A 100.000 55 0 0 2832 2886 478744611 478744665 5.090000e-18 102.0
7 TraesCS4B01G118800 chr4A 100.000 30 0 0 493 522 54385299 54385270 4.020000e-04 56.5
8 TraesCS4B01G118800 chr3B 96.405 306 10 1 147 451 699281977 699281672 1.190000e-138 503.0
9 TraesCS4B01G118800 chr3D 93.891 311 16 1 146 453 112101493 112101803 1.570000e-127 466.0
10 TraesCS4B01G118800 chr3D 97.436 39 1 0 488 526 560119691 560119729 1.860000e-07 67.6
11 TraesCS4B01G118800 chr5A 93.569 311 16 3 146 453 640692061 640691752 7.290000e-126 460.0
12 TraesCS4B01G118800 chr5A 77.049 366 51 25 1068 1430 285306292 285306627 2.280000e-41 180.0
13 TraesCS4B01G118800 chr7A 92.500 320 20 3 146 462 138976989 138976671 3.390000e-124 455.0
14 TraesCS4B01G118800 chr7A 92.926 311 18 3 146 453 48106745 48106436 1.580000e-122 449.0
15 TraesCS4B01G118800 chr5D 92.476 319 16 5 142 453 281024467 281024784 1.580000e-122 449.0
16 TraesCS4B01G118800 chr1D 93.182 308 18 2 147 451 52692473 52692166 1.580000e-122 449.0
17 TraesCS4B01G118800 chr1D 81.720 93 14 2 488 578 389488842 389488933 1.110000e-09 75.0
18 TraesCS4B01G118800 chr1D 82.353 85 13 1 493 575 479382383 479382299 3.990000e-09 73.1
19 TraesCS4B01G118800 chr5B 75.529 756 126 45 1068 1806 232214152 232214865 1.670000e-82 316.0
20 TraesCS4B01G118800 chr1A 92.000 50 3 1 474 523 578917914 578917962 5.160000e-08 69.4
21 TraesCS4B01G118800 chr1B 79.787 94 17 2 493 584 667645397 667645304 1.860000e-07 67.6
22 TraesCS4B01G118800 chr2B 86.667 60 6 2 488 545 599624526 599624467 6.670000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G118800 chr4B 139136897 139139782 2885 True 5330.000000 5330 100.000 1 2886 1 chr4B.!!$R1 2885
1 TraesCS4B01G118800 chr4D 97419029 97421460 2431 True 3768.000000 3768 94.806 476 2886 1 chr4D.!!$R1 2410
2 TraesCS4B01G118800 chr4A 478741947 478744665 2718 False 1213.333333 3371 93.551 1 2886 3 chr4A.!!$F1 2885
3 TraesCS4B01G118800 chr5B 232214152 232214865 713 False 316.000000 316 75.529 1068 1806 1 chr5B.!!$F1 738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 160 0.116342 AAAACCTAGGCCCCCTTTGG 59.884 55.0 9.3 0.0 34.61 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2131 2217 0.822811 TCTCAAGCTAGGCTGCTGAG 59.177 55.0 19.48 19.48 43.24 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 5.566469 ACGATCCATTCCTTGGTTTAGAAA 58.434 37.500 0.00 0.00 46.52 2.52
100 101 6.663523 ACGATCCATTCCTTGGTTTAGAAAAT 59.336 34.615 0.00 0.00 46.52 1.82
101 102 7.178451 ACGATCCATTCCTTGGTTTAGAAAATT 59.822 33.333 0.00 0.00 46.52 1.82
123 125 8.962884 AATTACTAAATCAAATTGGCATTCCC 57.037 30.769 0.00 0.00 0.00 3.97
128 130 3.979101 TCAAATTGGCATTCCCTTTCC 57.021 42.857 0.00 0.00 0.00 3.13
147 149 7.610692 CCCTTTCCTTTTCCTACTAAAACCTAG 59.389 40.741 0.00 0.00 0.00 3.02
148 150 7.610692 CCTTTCCTTTTCCTACTAAAACCTAGG 59.389 40.741 7.41 7.41 0.00 3.02
152 154 2.767972 TCCTACTAAAACCTAGGCCCC 58.232 52.381 9.30 0.00 31.01 5.80
154 156 2.631540 CCTACTAAAACCTAGGCCCCCT 60.632 54.545 9.30 0.00 37.71 4.79
155 157 2.070351 ACTAAAACCTAGGCCCCCTT 57.930 50.000 9.30 0.00 34.61 3.95
157 159 2.042569 ACTAAAACCTAGGCCCCCTTTG 59.957 50.000 9.30 0.00 34.61 2.77
158 160 0.116342 AAAACCTAGGCCCCCTTTGG 59.884 55.000 9.30 0.00 34.61 3.28
159 161 1.077901 AAACCTAGGCCCCCTTTGGT 61.078 55.000 9.30 0.00 39.60 3.67
160 162 1.077901 AACCTAGGCCCCCTTTGGTT 61.078 55.000 9.30 0.15 41.13 3.67
161 163 1.077901 ACCTAGGCCCCCTTTGGTTT 61.078 55.000 9.30 0.00 36.41 3.27
162 164 0.614697 CCTAGGCCCCCTTTGGTTTG 60.615 60.000 0.00 0.00 34.61 2.93
163 165 0.614697 CTAGGCCCCCTTTGGTTTGG 60.615 60.000 0.00 0.00 34.61 3.28
164 166 1.074895 TAGGCCCCCTTTGGTTTGGA 61.075 55.000 0.00 0.00 34.61 3.53
165 167 1.913262 GGCCCCCTTTGGTTTGGAG 60.913 63.158 0.00 0.00 0.00 3.86
166 168 1.913262 GCCCCCTTTGGTTTGGAGG 60.913 63.158 0.00 0.00 0.00 4.30
168 170 0.189822 CCCCCTTTGGTTTGGAGGAA 59.810 55.000 0.00 0.00 32.11 3.36
171 173 2.978978 CCCCTTTGGTTTGGAGGAATTT 59.021 45.455 0.00 0.00 32.11 1.82
173 175 4.388485 CCCTTTGGTTTGGAGGAATTTTG 58.612 43.478 0.00 0.00 32.11 2.44
175 177 5.071115 CCCTTTGGTTTGGAGGAATTTTGTA 59.929 40.000 0.00 0.00 32.11 2.41
179 181 5.459505 TGGTTTGGAGGAATTTTGTAGGAA 58.540 37.500 0.00 0.00 0.00 3.36
182 184 7.071824 TGGTTTGGAGGAATTTTGTAGGAATTT 59.928 33.333 0.00 0.00 0.00 1.82
183 185 7.602644 GGTTTGGAGGAATTTTGTAGGAATTTC 59.397 37.037 0.00 0.00 0.00 2.17
184 186 7.847711 TTGGAGGAATTTTGTAGGAATTTCA 57.152 32.000 0.00 0.00 0.00 2.69
188 190 8.633561 GGAGGAATTTTGTAGGAATTTCATAGG 58.366 37.037 0.00 0.00 0.00 2.57
189 191 8.539117 AGGAATTTTGTAGGAATTTCATAGGG 57.461 34.615 0.00 0.00 0.00 3.53
190 192 8.122481 AGGAATTTTGTAGGAATTTCATAGGGT 58.878 33.333 0.00 0.00 0.00 4.34
191 193 9.416284 GGAATTTTGTAGGAATTTCATAGGGTA 57.584 33.333 0.00 0.00 0.00 3.69
196 198 7.947782 TGTAGGAATTTCATAGGGTAGGATT 57.052 36.000 0.00 0.00 0.00 3.01
198 200 8.787818 TGTAGGAATTTCATAGGGTAGGATTTT 58.212 33.333 0.00 0.00 0.00 1.82
228 230 7.935520 GGAAAAATTCCTATAGAGCTCTTTGG 58.064 38.462 23.84 20.12 46.57 3.28
229 231 7.558081 GGAAAAATTCCTATAGAGCTCTTTGGT 59.442 37.037 23.84 8.59 46.57 3.67
230 232 8.885693 AAAAATTCCTATAGAGCTCTTTGGTT 57.114 30.769 23.84 9.84 0.00 3.67
231 233 8.885693 AAAATTCCTATAGAGCTCTTTGGTTT 57.114 30.769 23.84 14.53 0.00 3.27
232 234 7.872113 AATTCCTATAGAGCTCTTTGGTTTG 57.128 36.000 23.84 3.88 0.00 2.93
233 235 6.374417 TTCCTATAGAGCTCTTTGGTTTGT 57.626 37.500 23.84 0.00 0.00 2.83
234 236 7.490657 TTCCTATAGAGCTCTTTGGTTTGTA 57.509 36.000 23.84 0.00 0.00 2.41
235 237 7.113658 TCCTATAGAGCTCTTTGGTTTGTAG 57.886 40.000 23.84 7.55 0.00 2.74
236 238 6.098409 TCCTATAGAGCTCTTTGGTTTGTAGG 59.902 42.308 23.84 16.03 40.77 3.18
237 239 6.098409 CCTATAGAGCTCTTTGGTTTGTAGGA 59.902 42.308 23.84 0.00 41.41 2.94
238 240 4.706842 AGAGCTCTTTGGTTTGTAGGAA 57.293 40.909 11.45 0.00 0.00 3.36
239 241 5.248380 AGAGCTCTTTGGTTTGTAGGAAT 57.752 39.130 11.45 0.00 0.00 3.01
240 242 5.006386 AGAGCTCTTTGGTTTGTAGGAATG 58.994 41.667 11.45 0.00 0.00 2.67
241 243 4.985538 AGCTCTTTGGTTTGTAGGAATGA 58.014 39.130 0.00 0.00 0.00 2.57
242 244 5.385198 AGCTCTTTGGTTTGTAGGAATGAA 58.615 37.500 0.00 0.00 0.00 2.57
243 245 5.833131 AGCTCTTTGGTTTGTAGGAATGAAA 59.167 36.000 0.00 0.00 0.00 2.69
244 246 6.494835 AGCTCTTTGGTTTGTAGGAATGAAAT 59.505 34.615 0.00 0.00 0.00 2.17
245 247 6.808704 GCTCTTTGGTTTGTAGGAATGAAATC 59.191 38.462 0.00 0.00 0.00 2.17
246 248 7.227049 TCTTTGGTTTGTAGGAATGAAATCC 57.773 36.000 0.00 0.00 39.96 3.01
259 261 7.742556 GGAATGAAATCCTCTTTCTATGGAG 57.257 40.000 0.00 0.00 37.99 3.86
274 276 9.500785 CTTTCTATGGAGGAAATCTTCTTATCC 57.499 37.037 0.00 0.00 33.12 2.59
275 277 8.805145 TTCTATGGAGGAAATCTTCTTATCCT 57.195 34.615 0.00 0.00 44.85 3.24
276 278 8.805145 TCTATGGAGGAAATCTTCTTATCCTT 57.195 34.615 0.00 0.00 42.28 3.36
277 279 8.875168 TCTATGGAGGAAATCTTCTTATCCTTC 58.125 37.037 0.00 0.00 42.28 3.46
278 280 6.891306 TGGAGGAAATCTTCTTATCCTTCA 57.109 37.500 0.00 0.00 43.73 3.02
279 281 7.457380 TGGAGGAAATCTTCTTATCCTTCAT 57.543 36.000 0.00 0.00 41.61 2.57
280 282 8.567198 TGGAGGAAATCTTCTTATCCTTCATA 57.433 34.615 0.00 0.00 41.61 2.15
281 283 9.175577 TGGAGGAAATCTTCTTATCCTTCATAT 57.824 33.333 0.00 0.00 41.61 1.78
385 387 7.598189 CTACTCATAGGATTTGAGATGCATG 57.402 40.000 2.46 0.00 42.63 4.06
386 388 5.938279 ACTCATAGGATTTGAGATGCATGT 58.062 37.500 2.46 0.00 42.63 3.21
387 389 5.996513 ACTCATAGGATTTGAGATGCATGTC 59.003 40.000 16.63 16.63 42.63 3.06
388 390 5.932455 TCATAGGATTTGAGATGCATGTCA 58.068 37.500 21.70 21.70 0.00 3.58
389 391 6.540083 TCATAGGATTTGAGATGCATGTCAT 58.460 36.000 25.41 13.07 38.32 3.06
402 404 6.819397 ATGCATGTCATCTCATTTCCTATG 57.181 37.500 0.00 0.00 0.00 2.23
403 405 5.932455 TGCATGTCATCTCATTTCCTATGA 58.068 37.500 0.00 0.00 0.00 2.15
404 406 6.358991 TGCATGTCATCTCATTTCCTATGAA 58.641 36.000 0.00 0.00 30.60 2.57
405 407 7.002276 TGCATGTCATCTCATTTCCTATGAAT 58.998 34.615 0.00 0.00 30.60 2.57
406 408 7.504574 TGCATGTCATCTCATTTCCTATGAATT 59.495 33.333 0.00 0.00 30.60 2.17
407 409 8.358148 GCATGTCATCTCATTTCCTATGAATTT 58.642 33.333 0.00 0.00 30.60 1.82
410 412 9.690913 TGTCATCTCATTTCCTATGAATTTTCT 57.309 29.630 0.00 0.00 30.60 2.52
439 441 8.887393 TCCTATAATTTTCCTACCCTATGAACC 58.113 37.037 0.00 0.00 0.00 3.62
440 442 8.665906 CCTATAATTTTCCTACCCTATGAACCA 58.334 37.037 0.00 0.00 0.00 3.67
443 445 7.718334 AATTTTCCTACCCTATGAACCAAAG 57.282 36.000 0.00 0.00 0.00 2.77
444 446 4.855298 TTCCTACCCTATGAACCAAAGG 57.145 45.455 0.00 0.00 0.00 3.11
445 447 4.083080 TCCTACCCTATGAACCAAAGGA 57.917 45.455 0.00 0.00 31.64 3.36
446 448 4.037927 TCCTACCCTATGAACCAAAGGAG 58.962 47.826 0.00 0.00 31.64 3.69
447 449 3.136626 CCTACCCTATGAACCAAAGGAGG 59.863 52.174 0.00 0.00 31.64 4.30
448 450 1.285078 ACCCTATGAACCAAAGGAGGC 59.715 52.381 0.00 0.00 31.64 4.70
449 451 1.410224 CCCTATGAACCAAAGGAGGCC 60.410 57.143 0.00 0.00 31.64 5.19
450 452 1.566231 CCTATGAACCAAAGGAGGCCT 59.434 52.381 3.86 3.86 33.87 5.19
452 454 3.202151 CCTATGAACCAAAGGAGGCCTTA 59.798 47.826 6.77 0.00 43.92 2.69
453 455 2.579410 TGAACCAAAGGAGGCCTTAC 57.421 50.000 6.77 2.89 43.92 2.34
454 456 2.062636 TGAACCAAAGGAGGCCTTACT 58.937 47.619 6.77 5.78 43.92 2.24
460 462 4.975794 ACCAAAGGAGGCCTTACTGTATAT 59.024 41.667 6.77 0.00 43.92 0.86
469 471 7.618512 GGAGGCCTTACTGTATATCCTACATTA 59.381 40.741 6.77 0.00 0.00 1.90
542 571 8.880244 ACTAAATTAATTCTTTTTGCCTTCCCT 58.120 29.630 0.10 0.00 0.00 4.20
551 580 4.316025 TTTTGCCTTCCCTTAGCTGTAT 57.684 40.909 0.00 0.00 0.00 2.29
565 594 7.255381 CCCTTAGCTGTATCCAAATCAAATCAG 60.255 40.741 0.00 0.00 0.00 2.90
582 611 6.371548 TCAAATCAGATCTTACCAAAACCTCG 59.628 38.462 0.00 0.00 0.00 4.63
589 618 3.878699 TCTTACCAAAACCTCGACCAAAC 59.121 43.478 0.00 0.00 0.00 2.93
598 627 2.364002 ACCTCGACCAAACCAAAAATGG 59.636 45.455 0.00 0.00 40.16 3.16
645 674 6.682746 TCAAATCGGCAATTAGCTTGTTAAA 58.317 32.000 0.00 0.00 44.79 1.52
651 680 7.319646 TCGGCAATTAGCTTGTTAAATTCAAT 58.680 30.769 0.00 0.00 44.79 2.57
706 735 1.592400 TTACTGGTGCTCTCCGTCCG 61.592 60.000 0.00 0.00 0.00 4.79
783 813 1.272704 GGTTTTCCTGGAGCCATCCTT 60.273 52.381 0.00 0.00 46.80 3.36
789 819 0.322975 CTGGAGCCATCCTTATCCCG 59.677 60.000 0.00 0.00 46.80 5.14
816 846 0.179004 TGTAAACCAGGCCCACACAG 60.179 55.000 0.00 0.00 0.00 3.66
823 853 2.156098 AGGCCCACACAGACCACAT 61.156 57.895 0.00 0.00 0.00 3.21
890 920 3.621715 ACATATCGAGGCGGAAAGAAAAC 59.378 43.478 0.00 0.00 0.00 2.43
892 922 0.249573 TCGAGGCGGAAAGAAAACGT 60.250 50.000 0.00 0.00 0.00 3.99
1057 1120 1.556911 ACCAATCTTCTCATGGCGACT 59.443 47.619 0.00 0.00 37.77 4.18
1465 1537 2.125512 AAGGTCTCGTGCATCGGC 60.126 61.111 8.46 0.00 40.32 5.54
1845 1930 2.316108 GGTTGGGTTTGGTTGTGATCT 58.684 47.619 0.00 0.00 0.00 2.75
1858 1943 2.969990 TGTGATCTCTTCTGCTGCTTC 58.030 47.619 0.00 0.00 0.00 3.86
1957 2042 5.081728 ACATTTGTGGGATCATGATATGGG 58.918 41.667 8.54 0.00 0.00 4.00
2038 2124 5.070770 TGTTGCAACTTCACATGTTCTTT 57.929 34.783 28.61 0.00 0.00 2.52
2170 2256 1.101331 GGTAGAACGTCGTCCCTCAT 58.899 55.000 0.00 0.00 0.00 2.90
2260 2346 5.348986 TGTCTCTTATTACAGGAACGATGC 58.651 41.667 0.00 0.00 0.00 3.91
2353 2439 5.067936 CGTGTCCATCTAGTCATTCCTACTT 59.932 44.000 0.00 0.00 0.00 2.24
2400 2486 1.414181 CAATACTCTGCCGTCAGGGAT 59.586 52.381 0.00 0.00 43.62 3.85
2434 2530 5.811796 TCAACCTTAGCTGTAACCACTTA 57.188 39.130 0.00 0.00 0.00 2.24
2569 2665 2.351157 GCAGAAAAGCAGCCACTACTTG 60.351 50.000 0.00 0.00 0.00 3.16
2607 2703 0.322322 TCGTGGTTAGATTTGGGCGT 59.678 50.000 0.00 0.00 0.00 5.68
2626 2722 0.317160 TGCCACTTACTCGGTGACAG 59.683 55.000 0.00 0.00 36.89 3.51
2628 2724 1.204941 GCCACTTACTCGGTGACAGAT 59.795 52.381 0.00 0.00 36.89 2.90
2636 2732 0.172578 TCGGTGACAGATACGCCTTG 59.827 55.000 0.00 0.00 35.98 3.61
2640 2736 2.609459 GGTGACAGATACGCCTTGATTG 59.391 50.000 0.00 0.00 35.35 2.67
2651 2747 5.649782 ACGCCTTGATTGATTCTTTCATT 57.350 34.783 0.00 0.00 33.34 2.57
2748 2844 6.593770 TCACGCATCTGAATACACTATTTGTT 59.406 34.615 0.00 0.00 39.91 2.83
2776 2872 1.394917 CGAATTCTGGCTCCGAAACTG 59.605 52.381 3.52 0.00 0.00 3.16
2800 2896 4.488790 CAGCTGCACTGTTCCCTT 57.511 55.556 0.00 0.00 41.86 3.95
2801 2897 2.724520 CAGCTGCACTGTTCCCTTT 58.275 52.632 0.00 0.00 41.86 3.11
2802 2898 0.313043 CAGCTGCACTGTTCCCTTTG 59.687 55.000 0.00 0.00 41.86 2.77
2803 2899 0.106519 AGCTGCACTGTTCCCTTTGT 60.107 50.000 1.02 0.00 0.00 2.83
2804 2900 0.746659 GCTGCACTGTTCCCTTTGTT 59.253 50.000 0.00 0.00 0.00 2.83
2805 2901 1.536709 GCTGCACTGTTCCCTTTGTTG 60.537 52.381 0.00 0.00 0.00 3.33
2806 2902 0.459489 TGCACTGTTCCCTTTGTTGC 59.541 50.000 0.00 0.00 0.00 4.17
2807 2903 0.746659 GCACTGTTCCCTTTGTTGCT 59.253 50.000 0.00 0.00 0.00 3.91
2808 2904 1.136891 GCACTGTTCCCTTTGTTGCTT 59.863 47.619 0.00 0.00 0.00 3.91
2809 2905 2.418609 GCACTGTTCCCTTTGTTGCTTT 60.419 45.455 0.00 0.00 0.00 3.51
2810 2906 3.447742 CACTGTTCCCTTTGTTGCTTTC 58.552 45.455 0.00 0.00 0.00 2.62
2811 2907 2.099098 ACTGTTCCCTTTGTTGCTTTCG 59.901 45.455 0.00 0.00 0.00 3.46
2812 2908 2.357637 CTGTTCCCTTTGTTGCTTTCGA 59.642 45.455 0.00 0.00 0.00 3.71
2813 2909 2.755655 TGTTCCCTTTGTTGCTTTCGAA 59.244 40.909 0.00 0.00 0.00 3.71
2814 2910 3.181491 TGTTCCCTTTGTTGCTTTCGAAG 60.181 43.478 0.00 0.00 0.00 3.79
2815 2911 1.953686 TCCCTTTGTTGCTTTCGAAGG 59.046 47.619 2.35 2.35 42.83 3.46
2816 2912 2.422276 CCTTTGTTGCTTTCGAAGGG 57.578 50.000 9.52 2.81 40.75 3.95
2817 2913 1.681264 CCTTTGTTGCTTTCGAAGGGT 59.319 47.619 9.52 0.00 40.75 4.34
2818 2914 2.100749 CCTTTGTTGCTTTCGAAGGGTT 59.899 45.455 9.52 0.00 40.75 4.11
2819 2915 3.430236 CCTTTGTTGCTTTCGAAGGGTTT 60.430 43.478 9.52 0.00 40.75 3.27
2820 2916 3.878160 TTGTTGCTTTCGAAGGGTTTT 57.122 38.095 9.52 0.00 0.00 2.43
2821 2917 3.430333 TGTTGCTTTCGAAGGGTTTTC 57.570 42.857 9.52 0.00 0.00 2.29
2822 2918 3.020984 TGTTGCTTTCGAAGGGTTTTCT 58.979 40.909 9.52 0.00 0.00 2.52
2823 2919 3.445805 TGTTGCTTTCGAAGGGTTTTCTT 59.554 39.130 9.52 0.00 0.00 2.52
2824 2920 3.708563 TGCTTTCGAAGGGTTTTCTTG 57.291 42.857 9.52 0.00 0.00 3.02
2825 2921 2.223711 TGCTTTCGAAGGGTTTTCTTGC 60.224 45.455 9.52 0.00 0.00 4.01
2826 2922 2.223711 GCTTTCGAAGGGTTTTCTTGCA 60.224 45.455 9.52 0.00 0.00 4.08
2827 2923 3.736740 GCTTTCGAAGGGTTTTCTTGCAA 60.737 43.478 9.52 0.00 0.00 4.08
2828 2924 3.708563 TTCGAAGGGTTTTCTTGCAAG 57.291 42.857 20.81 20.81 0.00 4.01
2829 2925 1.953686 TCGAAGGGTTTTCTTGCAAGG 59.046 47.619 25.73 8.01 0.00 3.61
2830 2926 1.953686 CGAAGGGTTTTCTTGCAAGGA 59.046 47.619 25.73 15.86 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.186942 GGAATGGGAGAAGGTTAGAAAGTC 58.813 45.833 0.00 0.00 0.00 3.01
98 99 8.771286 AGGGAATGCCAATTTGATTTAGTAATT 58.229 29.630 0.00 0.00 35.15 1.40
100 101 7.732222 AGGGAATGCCAATTTGATTTAGTAA 57.268 32.000 0.00 0.00 35.15 2.24
101 102 7.732222 AAGGGAATGCCAATTTGATTTAGTA 57.268 32.000 0.00 0.00 35.15 1.82
109 110 3.986996 AGGAAAGGGAATGCCAATTTG 57.013 42.857 0.00 0.00 35.15 2.32
114 115 2.158173 AGGAAAAGGAAAGGGAATGCCA 60.158 45.455 0.00 0.00 35.15 4.92
115 116 2.540383 AGGAAAAGGAAAGGGAATGCC 58.460 47.619 0.00 0.00 0.00 4.40
117 118 8.304596 GTTTTAGTAGGAAAAGGAAAGGGAATG 58.695 37.037 0.00 0.00 0.00 2.67
123 125 7.120873 GCCTAGGTTTTAGTAGGAAAAGGAAAG 59.879 40.741 11.31 0.00 38.54 2.62
128 130 5.191426 GGGCCTAGGTTTTAGTAGGAAAAG 58.809 45.833 11.31 0.00 38.54 2.27
147 149 1.913262 CTCCAAACCAAAGGGGGCC 60.913 63.158 0.00 0.00 42.91 5.80
148 150 1.913262 CCTCCAAACCAAAGGGGGC 60.913 63.158 0.00 0.00 39.07 5.80
152 154 5.034852 ACAAAATTCCTCCAAACCAAAGG 57.965 39.130 0.00 0.00 0.00 3.11
154 156 5.900123 TCCTACAAAATTCCTCCAAACCAAA 59.100 36.000 0.00 0.00 0.00 3.28
155 157 5.459505 TCCTACAAAATTCCTCCAAACCAA 58.540 37.500 0.00 0.00 0.00 3.67
157 159 6.605471 ATTCCTACAAAATTCCTCCAAACC 57.395 37.500 0.00 0.00 0.00 3.27
158 160 8.147704 TGAAATTCCTACAAAATTCCTCCAAAC 58.852 33.333 0.00 0.00 0.00 2.93
159 161 8.256356 TGAAATTCCTACAAAATTCCTCCAAA 57.744 30.769 0.00 0.00 0.00 3.28
160 162 7.847711 TGAAATTCCTACAAAATTCCTCCAA 57.152 32.000 0.00 0.00 0.00 3.53
161 163 9.189156 CTATGAAATTCCTACAAAATTCCTCCA 57.811 33.333 0.00 0.00 0.00 3.86
162 164 8.633561 CCTATGAAATTCCTACAAAATTCCTCC 58.366 37.037 0.00 0.00 0.00 4.30
163 165 8.633561 CCCTATGAAATTCCTACAAAATTCCTC 58.366 37.037 0.00 0.00 0.00 3.71
164 166 8.122481 ACCCTATGAAATTCCTACAAAATTCCT 58.878 33.333 0.00 0.00 0.00 3.36
165 167 8.306313 ACCCTATGAAATTCCTACAAAATTCC 57.694 34.615 0.00 0.00 0.00 3.01
168 170 8.787818 TCCTACCCTATGAAATTCCTACAAAAT 58.212 33.333 0.00 0.00 0.00 1.82
171 173 7.947782 ATCCTACCCTATGAAATTCCTACAA 57.052 36.000 0.00 0.00 0.00 2.41
173 175 9.642343 AAAAATCCTACCCTATGAAATTCCTAC 57.358 33.333 0.00 0.00 0.00 3.18
204 206 8.512966 ACCAAAGAGCTCTATAGGAATTTTTC 57.487 34.615 26.71 0.00 0.00 2.29
205 207 8.885693 AACCAAAGAGCTCTATAGGAATTTTT 57.114 30.769 26.71 13.04 0.00 1.94
206 208 8.743714 CAAACCAAAGAGCTCTATAGGAATTTT 58.256 33.333 26.71 17.25 0.00 1.82
207 209 7.890655 ACAAACCAAAGAGCTCTATAGGAATTT 59.109 33.333 26.71 17.75 0.00 1.82
209 211 6.963322 ACAAACCAAAGAGCTCTATAGGAAT 58.037 36.000 26.71 16.14 0.00 3.01
212 214 6.098409 TCCTACAAACCAAAGAGCTCTATAGG 59.902 42.308 18.59 20.23 0.00 2.57
213 215 7.113658 TCCTACAAACCAAAGAGCTCTATAG 57.886 40.000 18.59 10.84 0.00 1.31
214 216 7.490657 TTCCTACAAACCAAAGAGCTCTATA 57.509 36.000 18.59 0.00 0.00 1.31
215 217 6.374417 TTCCTACAAACCAAAGAGCTCTAT 57.626 37.500 18.59 4.56 0.00 1.98
216 218 5.818678 TTCCTACAAACCAAAGAGCTCTA 57.181 39.130 18.59 0.00 0.00 2.43
217 219 4.706842 TTCCTACAAACCAAAGAGCTCT 57.293 40.909 11.45 11.45 0.00 4.09
218 220 5.003804 TCATTCCTACAAACCAAAGAGCTC 58.996 41.667 5.27 5.27 0.00 4.09
221 223 7.177392 AGGATTTCATTCCTACAAACCAAAGAG 59.823 37.037 0.00 0.00 44.50 2.85
222 224 7.010160 AGGATTTCATTCCTACAAACCAAAGA 58.990 34.615 0.00 0.00 44.50 2.52
223 225 7.177392 AGAGGATTTCATTCCTACAAACCAAAG 59.823 37.037 0.00 0.00 46.35 2.77
224 226 7.010160 AGAGGATTTCATTCCTACAAACCAAA 58.990 34.615 0.00 0.00 46.35 3.28
225 227 6.552008 AGAGGATTTCATTCCTACAAACCAA 58.448 36.000 0.00 0.00 46.35 3.67
226 228 6.139679 AGAGGATTTCATTCCTACAAACCA 57.860 37.500 0.00 0.00 46.35 3.67
227 229 7.394641 AGAAAGAGGATTTCATTCCTACAAACC 59.605 37.037 3.44 0.00 46.35 3.27
228 230 8.341892 AGAAAGAGGATTTCATTCCTACAAAC 57.658 34.615 3.44 0.00 46.35 2.93
230 232 9.618890 CATAGAAAGAGGATTTCATTCCTACAA 57.381 33.333 3.44 0.00 46.35 2.41
231 233 8.213679 CCATAGAAAGAGGATTTCATTCCTACA 58.786 37.037 3.44 0.00 46.35 2.74
232 234 8.432805 TCCATAGAAAGAGGATTTCATTCCTAC 58.567 37.037 3.44 0.00 46.35 3.18
233 235 8.567198 TCCATAGAAAGAGGATTTCATTCCTA 57.433 34.615 3.44 0.00 46.35 2.94
235 237 7.742556 CTCCATAGAAAGAGGATTTCATTCC 57.257 40.000 3.44 0.00 34.77 3.01
248 250 9.500785 GGATAAGAAGATTTCCTCCATAGAAAG 57.499 37.037 0.00 0.00 36.71 2.62
249 251 9.230477 AGGATAAGAAGATTTCCTCCATAGAAA 57.770 33.333 0.00 0.00 33.22 2.52
250 252 8.805145 AGGATAAGAAGATTTCCTCCATAGAA 57.195 34.615 0.00 0.00 33.22 2.10
251 253 8.805145 AAGGATAAGAAGATTTCCTCCATAGA 57.195 34.615 0.00 0.00 37.62 1.98
252 254 8.654997 TGAAGGATAAGAAGATTTCCTCCATAG 58.345 37.037 0.00 0.00 37.62 2.23
253 255 8.567198 TGAAGGATAAGAAGATTTCCTCCATA 57.433 34.615 0.00 0.00 37.62 2.74
254 256 7.457380 TGAAGGATAAGAAGATTTCCTCCAT 57.543 36.000 0.00 0.00 37.62 3.41
255 257 6.891306 TGAAGGATAAGAAGATTTCCTCCA 57.109 37.500 0.00 0.00 37.62 3.86
361 363 7.160049 ACATGCATCTCAAATCCTATGAGTAG 58.840 38.462 0.00 0.11 43.77 2.57
362 364 7.071069 ACATGCATCTCAAATCCTATGAGTA 57.929 36.000 0.00 0.00 43.77 2.59
363 365 5.938279 ACATGCATCTCAAATCCTATGAGT 58.062 37.500 0.00 0.00 43.77 3.41
364 366 5.995897 TGACATGCATCTCAAATCCTATGAG 59.004 40.000 1.73 0.00 44.53 2.90
365 367 5.932455 TGACATGCATCTCAAATCCTATGA 58.068 37.500 1.73 0.00 0.00 2.15
366 368 6.819397 ATGACATGCATCTCAAATCCTATG 57.181 37.500 8.81 0.00 28.85 2.23
379 381 6.540083 TCATAGGAAATGAGATGACATGCAT 58.460 36.000 0.00 0.00 40.77 3.96
380 382 5.932455 TCATAGGAAATGAGATGACATGCA 58.068 37.500 0.00 0.00 0.00 3.96
381 383 6.872628 TTCATAGGAAATGAGATGACATGC 57.127 37.500 0.00 0.00 0.00 4.06
384 386 9.690913 AGAAAATTCATAGGAAATGAGATGACA 57.309 29.630 0.00 0.00 36.43 3.58
413 415 8.887393 GGTTCATAGGGTAGGAAAATTATAGGA 58.113 37.037 0.00 0.00 29.56 2.94
414 416 8.665906 TGGTTCATAGGGTAGGAAAATTATAGG 58.334 37.037 0.00 0.00 29.56 2.57
417 419 9.421399 CTTTGGTTCATAGGGTAGGAAAATTAT 57.579 33.333 0.00 0.00 29.56 1.28
418 420 7.837187 CCTTTGGTTCATAGGGTAGGAAAATTA 59.163 37.037 0.00 0.00 30.68 1.40
419 421 6.667848 CCTTTGGTTCATAGGGTAGGAAAATT 59.332 38.462 0.00 0.00 30.68 1.82
420 422 6.011096 TCCTTTGGTTCATAGGGTAGGAAAAT 60.011 38.462 4.94 0.00 34.20 1.82
421 423 5.313772 TCCTTTGGTTCATAGGGTAGGAAAA 59.686 40.000 4.94 0.00 34.20 2.29
422 424 4.853276 TCCTTTGGTTCATAGGGTAGGAAA 59.147 41.667 4.94 0.00 34.20 3.13
423 425 4.440808 TCCTTTGGTTCATAGGGTAGGAA 58.559 43.478 4.94 0.00 34.20 3.36
424 426 4.037927 CTCCTTTGGTTCATAGGGTAGGA 58.962 47.826 4.94 0.00 34.20 2.94
425 427 3.136626 CCTCCTTTGGTTCATAGGGTAGG 59.863 52.174 4.94 2.50 34.20 3.18
426 428 3.433740 GCCTCCTTTGGTTCATAGGGTAG 60.434 52.174 4.94 0.00 34.20 3.18
427 429 2.508300 GCCTCCTTTGGTTCATAGGGTA 59.492 50.000 4.94 0.00 34.20 3.69
428 430 1.285078 GCCTCCTTTGGTTCATAGGGT 59.715 52.381 4.94 0.00 34.20 4.34
429 431 1.410224 GGCCTCCTTTGGTTCATAGGG 60.410 57.143 0.00 0.00 34.20 3.53
430 432 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
431 433 3.372440 AAGGCCTCCTTTGGTTCATAG 57.628 47.619 5.23 0.00 41.69 2.23
432 434 3.850173 AGTAAGGCCTCCTTTGGTTCATA 59.150 43.478 5.23 0.00 41.69 2.15
433 435 2.649816 AGTAAGGCCTCCTTTGGTTCAT 59.350 45.455 5.23 0.00 41.69 2.57
434 436 2.062636 AGTAAGGCCTCCTTTGGTTCA 58.937 47.619 5.23 0.00 41.69 3.18
435 437 2.224793 ACAGTAAGGCCTCCTTTGGTTC 60.225 50.000 5.23 0.00 41.69 3.62
436 438 1.780919 ACAGTAAGGCCTCCTTTGGTT 59.219 47.619 5.23 0.00 41.69 3.67
437 439 1.446016 ACAGTAAGGCCTCCTTTGGT 58.554 50.000 5.23 0.00 41.69 3.67
438 440 3.933861 ATACAGTAAGGCCTCCTTTGG 57.066 47.619 5.23 0.00 41.69 3.28
439 441 5.308237 AGGATATACAGTAAGGCCTCCTTTG 59.692 44.000 5.23 5.27 41.69 2.77
440 442 5.477913 AGGATATACAGTAAGGCCTCCTTT 58.522 41.667 5.23 0.39 41.69 3.11
441 443 5.094569 AGGATATACAGTAAGGCCTCCTT 57.905 43.478 5.23 3.40 46.63 3.36
442 444 4.768807 AGGATATACAGTAAGGCCTCCT 57.231 45.455 5.23 1.46 33.87 3.69
443 445 5.331069 TGTAGGATATACAGTAAGGCCTCC 58.669 45.833 5.23 0.00 0.00 4.30
444 446 7.483580 AATGTAGGATATACAGTAAGGCCTC 57.516 40.000 5.23 0.00 0.00 4.70
445 447 8.813951 GTTAATGTAGGATATACAGTAAGGCCT 58.186 37.037 0.00 0.00 38.23 5.19
446 448 8.813951 AGTTAATGTAGGATATACAGTAAGGCC 58.186 37.037 7.85 0.00 38.23 5.19
447 449 9.857957 GAGTTAATGTAGGATATACAGTAAGGC 57.142 37.037 7.85 1.74 38.23 4.35
528 557 2.893489 ACAGCTAAGGGAAGGCAAAAAG 59.107 45.455 0.00 0.00 0.00 2.27
551 580 8.648698 TTTGGTAAGATCTGATTTGATTTGGA 57.351 30.769 0.00 0.00 0.00 3.53
565 594 3.934068 TGGTCGAGGTTTTGGTAAGATC 58.066 45.455 0.00 0.00 0.00 2.75
589 618 3.368739 GGATGAGGCAAGACCATTTTTGG 60.369 47.826 0.00 0.00 43.14 3.28
598 627 6.209589 TGAGTATGTATAGGATGAGGCAAGAC 59.790 42.308 0.00 0.00 0.00 3.01
669 698 5.869888 CCAGTAAAGACTCTTGCGTTAAGAT 59.130 40.000 5.02 0.00 44.12 2.40
673 702 4.304110 CACCAGTAAAGACTCTTGCGTTA 58.696 43.478 0.00 0.00 31.73 3.18
683 712 1.272769 ACGGAGAGCACCAGTAAAGAC 59.727 52.381 0.00 0.00 0.00 3.01
783 813 2.290197 GGTTTACAACACACCCGGGATA 60.290 50.000 32.02 4.47 0.00 2.59
789 819 0.671796 GCCTGGTTTACAACACACCC 59.328 55.000 0.00 0.00 0.00 4.61
816 846 1.187087 AAGTCGGAGGAGATGTGGTC 58.813 55.000 0.00 0.00 0.00 4.02
823 853 4.619863 CGGTTTATCAAAAGTCGGAGGAGA 60.620 45.833 0.00 0.00 0.00 3.71
997 1038 4.368543 AAGTCGTCGGCCGGTTCC 62.369 66.667 27.83 11.50 37.11 3.62
1003 1044 1.153804 GAGGAAGAAGTCGTCGGCC 60.154 63.158 0.00 0.00 31.82 6.13
1594 1666 2.098680 GACCAGTCGACGCTCTCG 59.901 66.667 10.46 0.00 44.44 4.04
1845 1930 1.605710 GCAACAAGAAGCAGCAGAAGA 59.394 47.619 0.00 0.00 0.00 2.87
1858 1943 1.639298 GCCTAGAGCACGGCAACAAG 61.639 60.000 0.00 0.00 45.59 3.16
1931 2016 7.149973 CCATATCATGATCCCACAAATGTTTC 58.850 38.462 12.53 0.00 0.00 2.78
1932 2017 6.042322 CCCATATCATGATCCCACAAATGTTT 59.958 38.462 12.53 0.00 0.00 2.83
1933 2018 5.541101 CCCATATCATGATCCCACAAATGTT 59.459 40.000 12.53 0.00 0.00 2.71
2038 2124 3.154710 AGACGTCAGGACTACATTGTCA 58.845 45.455 19.50 0.00 38.61 3.58
2088 2174 7.066284 GTGGTGCAAGATATGTAGTCAAGATTT 59.934 37.037 0.00 0.00 0.00 2.17
2131 2217 0.822811 TCTCAAGCTAGGCTGCTGAG 59.177 55.000 19.48 19.48 43.24 3.35
2180 2266 0.312416 GAGTGACACGACAGCTGAGT 59.688 55.000 23.35 16.90 0.00 3.41
2275 2361 1.135721 GAATGCCTTTGGAGATGTGGC 59.864 52.381 0.00 0.00 43.49 5.01
2353 2439 7.871973 CACAATTCAAAATCTGTCCCAATTGTA 59.128 33.333 4.43 0.00 36.96 2.41
2400 2486 6.716628 ACAGCTAAGGTTGAATTTTCATCAGA 59.283 34.615 0.00 0.00 37.00 3.27
2434 2530 7.775053 TTTAGGGAAACTATGTGCTGAAAAT 57.225 32.000 0.00 0.00 0.00 1.82
2467 2563 2.681848 CAAAGAATGCTGGGCAGAGTAG 59.318 50.000 0.00 0.00 43.65 2.57
2569 2665 3.985925 ACGAAACAAACAGATCTACGACC 59.014 43.478 0.00 0.00 0.00 4.79
2574 2670 6.751157 TCTAACCACGAAACAAACAGATCTA 58.249 36.000 0.00 0.00 0.00 1.98
2607 2703 0.317160 CTGTCACCGAGTAAGTGGCA 59.683 55.000 0.00 0.00 46.99 4.92
2626 2722 6.363577 TGAAAGAATCAATCAAGGCGTATC 57.636 37.500 0.00 0.00 34.30 2.24
2628 2724 6.554419 CAATGAAAGAATCAATCAAGGCGTA 58.446 36.000 0.00 0.00 42.54 4.42
2636 2732 9.745880 AACTGATATGCAATGAAAGAATCAATC 57.254 29.630 0.00 0.00 42.54 2.67
2651 2747 7.609760 ACGAAGTCAAATAAACTGATATGCA 57.390 32.000 0.00 0.00 29.74 3.96
2696 2792 7.386573 TCAAACTCGAAAACATGACAGCTTATA 59.613 33.333 0.00 0.00 0.00 0.98
2697 2793 6.204688 TCAAACTCGAAAACATGACAGCTTAT 59.795 34.615 0.00 0.00 0.00 1.73
2748 2844 3.490933 CGGAGCCAGAATTCGTGAATAGA 60.491 47.826 0.00 0.00 0.00 1.98
2797 2893 1.681264 ACCCTTCGAAAGCAACAAAGG 59.319 47.619 0.00 0.00 36.95 3.11
2798 2894 3.436700 AACCCTTCGAAAGCAACAAAG 57.563 42.857 0.00 0.00 0.00 2.77
2799 2895 3.878160 AAACCCTTCGAAAGCAACAAA 57.122 38.095 0.00 0.00 0.00 2.83
2800 2896 3.445805 AGAAAACCCTTCGAAAGCAACAA 59.554 39.130 0.00 0.00 0.00 2.83
2801 2897 3.020984 AGAAAACCCTTCGAAAGCAACA 58.979 40.909 0.00 0.00 0.00 3.33
2802 2898 3.710326 AGAAAACCCTTCGAAAGCAAC 57.290 42.857 0.00 0.00 0.00 4.17
2803 2899 3.736740 GCAAGAAAACCCTTCGAAAGCAA 60.737 43.478 0.00 0.00 0.00 3.91
2804 2900 2.223711 GCAAGAAAACCCTTCGAAAGCA 60.224 45.455 0.00 0.00 0.00 3.91
2805 2901 2.223711 TGCAAGAAAACCCTTCGAAAGC 60.224 45.455 0.00 0.00 0.00 3.51
2806 2902 3.708563 TGCAAGAAAACCCTTCGAAAG 57.291 42.857 0.00 0.00 0.00 2.62
2807 2903 3.181480 CCTTGCAAGAAAACCCTTCGAAA 60.181 43.478 28.05 0.00 0.00 3.46
2808 2904 2.360801 CCTTGCAAGAAAACCCTTCGAA 59.639 45.455 28.05 0.00 0.00 3.71
2809 2905 1.953686 CCTTGCAAGAAAACCCTTCGA 59.046 47.619 28.05 0.00 0.00 3.71
2810 2906 1.953686 TCCTTGCAAGAAAACCCTTCG 59.046 47.619 28.05 6.84 0.00 3.79
2811 2907 2.959030 AGTCCTTGCAAGAAAACCCTTC 59.041 45.455 28.05 6.79 0.00 3.46
2812 2908 3.032265 AGTCCTTGCAAGAAAACCCTT 57.968 42.857 28.05 4.81 0.00 3.95
2813 2909 2.695147 CAAGTCCTTGCAAGAAAACCCT 59.305 45.455 28.05 10.24 33.45 4.34
2814 2910 2.430694 ACAAGTCCTTGCAAGAAAACCC 59.569 45.455 28.05 8.21 44.03 4.11
2815 2911 3.801114 ACAAGTCCTTGCAAGAAAACC 57.199 42.857 28.05 9.89 44.03 3.27
2816 2912 6.253512 CACTTAACAAGTCCTTGCAAGAAAAC 59.746 38.462 28.05 20.28 44.03 2.43
2817 2913 6.151985 TCACTTAACAAGTCCTTGCAAGAAAA 59.848 34.615 28.05 9.88 44.03 2.29
2818 2914 5.650266 TCACTTAACAAGTCCTTGCAAGAAA 59.350 36.000 28.05 12.49 44.03 2.52
2819 2915 5.065988 GTCACTTAACAAGTCCTTGCAAGAA 59.934 40.000 28.05 4.03 44.03 2.52
2820 2916 4.574828 GTCACTTAACAAGTCCTTGCAAGA 59.425 41.667 28.05 11.04 44.03 3.02
2821 2917 4.576463 AGTCACTTAACAAGTCCTTGCAAG 59.424 41.667 19.93 19.93 44.03 4.01
2822 2918 4.335315 CAGTCACTTAACAAGTCCTTGCAA 59.665 41.667 6.94 0.00 44.03 4.08
2823 2919 3.876914 CAGTCACTTAACAAGTCCTTGCA 59.123 43.478 6.94 0.00 44.03 4.08
2824 2920 4.127171 TCAGTCACTTAACAAGTCCTTGC 58.873 43.478 6.94 0.00 44.03 4.01
2825 2921 6.867662 AATCAGTCACTTAACAAGTCCTTG 57.132 37.500 5.51 5.51 45.58 3.61
2826 2922 8.157476 ACATAATCAGTCACTTAACAAGTCCTT 58.843 33.333 0.00 0.00 40.46 3.36
2827 2923 7.604164 CACATAATCAGTCACTTAACAAGTCCT 59.396 37.037 0.00 0.00 40.46 3.85
2828 2924 7.624344 GCACATAATCAGTCACTTAACAAGTCC 60.624 40.741 0.00 0.00 40.46 3.85
2829 2925 7.118390 AGCACATAATCAGTCACTTAACAAGTC 59.882 37.037 0.00 0.00 40.46 3.01
2830 2926 6.936900 AGCACATAATCAGTCACTTAACAAGT 59.063 34.615 0.00 0.00 44.06 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.