Multiple sequence alignment - TraesCS4B01G118700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G118700 chr4B 100.000 2942 0 0 1 2942 139133165 139136106 0.000000e+00 5433.0
1 TraesCS4B01G118700 chr4B 96.610 59 2 0 1 59 292820838 292820780 6.710000e-17 99.0
2 TraesCS4B01G118700 chr4B 100.000 52 0 0 1 52 53104125 53104176 2.410000e-16 97.1
3 TraesCS4B01G118700 chr4B 96.552 58 2 0 1 58 63076008 63075951 2.410000e-16 97.1
4 TraesCS4B01G118700 chr4B 92.647 68 1 4 1 67 135127792 135127856 8.680000e-16 95.3
5 TraesCS4B01G118700 chr4B 92.424 66 3 2 1 65 545232183 545232247 3.120000e-15 93.5
6 TraesCS4B01G118700 chr4D 93.810 2068 82 22 563 2612 97384847 97386886 0.000000e+00 3068.0
7 TraesCS4B01G118700 chr4D 85.308 211 10 2 2682 2872 97388705 97388914 6.430000e-47 198.0
8 TraesCS4B01G118700 chr4D 91.579 95 4 3 599 689 3595810 3595904 8.560000e-26 128.0
9 TraesCS4B01G118700 chr4D 98.529 68 1 0 2604 2671 97388349 97388416 1.430000e-23 121.0
10 TraesCS4B01G118700 chr4A 93.658 1419 57 16 573 1988 478747866 478746478 0.000000e+00 2091.0
11 TraesCS4B01G118700 chr4A 86.466 399 35 8 2011 2409 478746485 478746106 1.260000e-113 420.0
12 TraesCS4B01G118700 chrUn 89.961 508 47 2 49 554 37179819 37180324 0.000000e+00 652.0
13 TraesCS4B01G118700 chrUn 88.889 54 6 0 239 292 326014761 326014814 1.890000e-07 67.6
14 TraesCS4B01G118700 chrUn 88.889 54 6 0 239 292 355031366 355031419 1.890000e-07 67.6
15 TraesCS4B01G118700 chr7B 84.524 504 63 11 52 546 125914124 125914621 4.410000e-133 484.0
16 TraesCS4B01G118700 chr7B 82.330 515 69 15 52 553 4492927 4492422 7.540000e-116 427.0
17 TraesCS4B01G118700 chr7B 95.604 91 2 2 599 689 668219302 668219214 8.500000e-31 145.0
18 TraesCS4B01G118700 chr7B 90.000 100 9 1 592 691 17611610 17611708 8.560000e-26 128.0
19 TraesCS4B01G118700 chr5B 82.583 511 67 13 57 558 441728579 441729076 5.830000e-117 431.0
20 TraesCS4B01G118700 chr3B 82.812 512 59 16 55 554 90213551 90213057 5.830000e-117 431.0
21 TraesCS4B01G118700 chr6B 81.287 513 85 6 52 554 289524673 289525184 3.530000e-109 405.0
22 TraesCS4B01G118700 chr1B 77.820 266 48 7 1669 1933 686747291 686747036 1.410000e-33 154.0
23 TraesCS4B01G118700 chr1B 95.238 63 1 2 1 62 397147027 397146966 6.710000e-17 99.0
24 TraesCS4B01G118700 chr1B 100.000 52 0 0 1 52 156105222 156105273 2.410000e-16 97.1
25 TraesCS4B01G118700 chr1B 100.000 52 0 0 1 52 373356396 373356447 2.410000e-16 97.1
26 TraesCS4B01G118700 chr7D 94.624 93 3 2 599 690 593027186 593027277 3.060000e-30 143.0
27 TraesCS4B01G118700 chr7D 91.667 96 5 3 585 677 74395275 74395370 2.380000e-26 130.0
28 TraesCS4B01G118700 chr7D 90.196 102 7 3 591 691 74400612 74400711 2.380000e-26 130.0
29 TraesCS4B01G118700 chr7D 82.759 116 17 2 57 172 111780984 111781096 1.870000e-17 100.0
30 TraesCS4B01G118700 chr1D 77.068 266 50 7 1669 1933 493703017 493702762 3.060000e-30 143.0
31 TraesCS4B01G118700 chr1D 76.371 237 47 7 1697 1933 493701458 493701231 5.150000e-23 119.0
32 TraesCS4B01G118700 chr1D 77.857 140 31 0 1669 1808 493684022 493683883 1.450000e-13 87.9
33 TraesCS4B01G118700 chr5A 93.617 94 4 2 595 687 329830153 329830061 3.950000e-29 139.0
34 TraesCS4B01G118700 chr1A 77.311 238 43 7 1697 1933 591947559 591947332 2.380000e-26 130.0
35 TraesCS4B01G118700 chr1A 81.818 110 18 2 210 319 307027150 307027257 1.120000e-14 91.6
36 TraesCS4B01G118700 chr2B 91.429 70 4 2 1 68 358353865 358353796 8.680000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G118700 chr4B 139133165 139136106 2941 False 5433.0 5433 100.000 1 2942 1 chr4B.!!$F3 2941
1 TraesCS4B01G118700 chr4D 97384847 97388914 4067 False 1129.0 3068 92.549 563 2872 3 chr4D.!!$F2 2309
2 TraesCS4B01G118700 chr4A 478746106 478747866 1760 True 1255.5 2091 90.062 573 2409 2 chr4A.!!$R1 1836
3 TraesCS4B01G118700 chrUn 37179819 37180324 505 False 652.0 652 89.961 49 554 1 chrUn.!!$F1 505
4 TraesCS4B01G118700 chr7B 4492422 4492927 505 True 427.0 427 82.330 52 553 1 chr7B.!!$R1 501
5 TraesCS4B01G118700 chr6B 289524673 289525184 511 False 405.0 405 81.287 52 554 1 chr6B.!!$F1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.031414 TGCCTCTCCTTAGTACCCCC 60.031 60.0 0.0 0.0 0.00 5.40 F
971 991 0.039618 TGACCAATCAGGGGAAAGGC 59.960 55.0 0.0 0.0 43.89 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 1626 2.359230 GCTTCCGCTTGAGCTGGT 60.359 61.111 0.0 0.0 39.32 4.00 R
2830 4625 0.460811 TGCTTGAGATAGCAGTGGCG 60.461 55.000 0.0 0.0 45.72 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.629220 TGCCTCTCCTTAGTACCCC 57.371 57.895 0.00 0.00 0.00 4.95
19 20 0.031414 TGCCTCTCCTTAGTACCCCC 60.031 60.000 0.00 0.00 0.00 5.40
35 36 2.526888 CCCCCTACACTACTGTCAGA 57.473 55.000 6.91 0.00 0.00 3.27
36 37 2.100989 CCCCCTACACTACTGTCAGAC 58.899 57.143 6.91 0.00 0.00 3.51
37 38 2.291670 CCCCCTACACTACTGTCAGACT 60.292 54.545 6.91 0.00 0.00 3.24
38 39 3.432378 CCCCTACACTACTGTCAGACTT 58.568 50.000 6.91 0.00 0.00 3.01
39 40 4.569228 CCCCCTACACTACTGTCAGACTTA 60.569 50.000 6.91 0.00 0.00 2.24
40 41 4.641094 CCCCTACACTACTGTCAGACTTAG 59.359 50.000 6.91 5.32 0.00 2.18
41 42 5.498393 CCCTACACTACTGTCAGACTTAGA 58.502 45.833 6.91 0.00 0.00 2.10
42 43 5.944599 CCCTACACTACTGTCAGACTTAGAA 59.055 44.000 6.91 2.57 0.00 2.10
43 44 6.127952 CCCTACACTACTGTCAGACTTAGAAC 60.128 46.154 6.91 0.00 0.00 3.01
44 45 5.708877 ACACTACTGTCAGACTTAGAACC 57.291 43.478 6.91 0.00 0.00 3.62
45 46 5.138276 ACACTACTGTCAGACTTAGAACCA 58.862 41.667 6.91 0.00 0.00 3.67
46 47 5.009811 ACACTACTGTCAGACTTAGAACCAC 59.990 44.000 6.91 0.00 0.00 4.16
47 48 3.644884 ACTGTCAGACTTAGAACCACG 57.355 47.619 6.91 0.00 0.00 4.94
48 49 3.220110 ACTGTCAGACTTAGAACCACGA 58.780 45.455 6.91 0.00 0.00 4.35
49 50 3.004524 ACTGTCAGACTTAGAACCACGAC 59.995 47.826 6.91 0.00 0.00 4.34
50 51 2.953648 TGTCAGACTTAGAACCACGACA 59.046 45.455 1.31 0.00 0.00 4.35
91 92 2.752238 CGAGCACGAGGAGGAGGT 60.752 66.667 0.00 0.00 42.66 3.85
93 94 2.681778 AGCACGAGGAGGAGGTGG 60.682 66.667 0.00 0.00 32.42 4.61
159 160 4.135153 AGAATGAGGAGCGCGCGT 62.135 61.111 32.35 18.26 0.00 6.01
161 162 4.135153 AATGAGGAGCGCGCGTCT 62.135 61.111 32.35 27.23 0.00 4.18
174 175 3.120385 CGTCTCGCAGCAATGCCA 61.120 61.111 0.00 0.00 0.00 4.92
175 176 2.466982 CGTCTCGCAGCAATGCCAT 61.467 57.895 0.00 0.00 0.00 4.40
277 279 3.733960 CCTCACTGGCGACGACGA 61.734 66.667 12.29 0.00 42.66 4.20
403 410 7.385778 TGGCCAGTTAATGTTTACTTATGTC 57.614 36.000 0.00 0.00 0.00 3.06
524 532 6.417635 GCGAACAATTGAGTCAAGAAAATCAA 59.582 34.615 13.59 0.00 36.22 2.57
554 565 9.155975 CTTTCGCTTCTACTAATATATTGCCAT 57.844 33.333 8.28 0.00 0.00 4.40
555 566 8.703604 TTCGCTTCTACTAATATATTGCCATC 57.296 34.615 8.28 0.00 0.00 3.51
556 567 7.836842 TCGCTTCTACTAATATATTGCCATCA 58.163 34.615 8.28 0.00 0.00 3.07
557 568 7.759886 TCGCTTCTACTAATATATTGCCATCAC 59.240 37.037 8.28 0.00 0.00 3.06
558 569 7.761704 CGCTTCTACTAATATATTGCCATCACT 59.238 37.037 8.28 0.00 0.00 3.41
559 570 8.877779 GCTTCTACTAATATATTGCCATCACTG 58.122 37.037 8.28 0.00 0.00 3.66
560 571 9.376075 CTTCTACTAATATATTGCCATCACTGG 57.624 37.037 8.28 0.00 46.17 4.00
561 572 8.664669 TCTACTAATATATTGCCATCACTGGA 57.335 34.615 8.28 0.00 46.37 3.86
562 573 8.753133 TCTACTAATATATTGCCATCACTGGAG 58.247 37.037 8.28 0.00 46.37 3.86
563 574 7.321717 ACTAATATATTGCCATCACTGGAGT 57.678 36.000 8.28 0.00 46.37 3.85
564 575 8.435931 ACTAATATATTGCCATCACTGGAGTA 57.564 34.615 8.28 0.00 46.37 2.59
565 576 8.880244 ACTAATATATTGCCATCACTGGAGTAA 58.120 33.333 8.28 0.00 46.37 2.24
566 577 9.725019 CTAATATATTGCCATCACTGGAGTAAA 57.275 33.333 8.28 0.00 46.37 2.01
567 578 8.995027 AATATATTGCCATCACTGGAGTAAAA 57.005 30.769 0.00 0.00 46.37 1.52
568 579 8.995027 ATATATTGCCATCACTGGAGTAAAAA 57.005 30.769 0.00 0.00 46.37 1.94
569 580 4.846779 TTGCCATCACTGGAGTAAAAAC 57.153 40.909 0.00 0.00 46.37 2.43
570 581 3.826524 TGCCATCACTGGAGTAAAAACA 58.173 40.909 0.00 0.00 46.37 2.83
571 582 3.568007 TGCCATCACTGGAGTAAAAACAC 59.432 43.478 0.00 0.00 46.37 3.32
582 593 5.761234 TGGAGTAAAAACACTTTATGTCGCT 59.239 36.000 0.00 0.00 42.31 4.93
585 596 7.254227 AGTAAAAACACTTTATGTCGCTCAA 57.746 32.000 0.00 0.00 42.31 3.02
586 597 7.130269 AGTAAAAACACTTTATGTCGCTCAAC 58.870 34.615 0.00 0.00 42.31 3.18
587 598 3.788434 AACACTTTATGTCGCTCAACG 57.212 42.857 0.00 0.00 42.31 4.10
675 694 1.698506 TCTCGCAACACCCCATTTTT 58.301 45.000 0.00 0.00 0.00 1.94
856 876 0.858598 TCCTCCCCCTTCTACCTCCA 60.859 60.000 0.00 0.00 0.00 3.86
887 907 3.948719 GTCCCACCCAGCAACCGA 61.949 66.667 0.00 0.00 0.00 4.69
906 926 3.061697 CCGAGTTTCGTGCCTGTAAATAC 59.938 47.826 0.00 0.00 38.40 1.89
907 927 3.676172 CGAGTTTCGTGCCTGTAAATACA 59.324 43.478 0.00 0.00 34.72 2.29
964 984 2.350522 CTTCGACTTGACCAATCAGGG 58.649 52.381 0.00 0.00 43.89 4.45
968 988 2.552155 CGACTTGACCAATCAGGGGAAA 60.552 50.000 0.00 0.00 43.89 3.13
970 990 2.225117 ACTTGACCAATCAGGGGAAAGG 60.225 50.000 0.00 0.00 43.89 3.11
971 991 0.039618 TGACCAATCAGGGGAAAGGC 59.960 55.000 0.00 0.00 43.89 4.35
973 993 0.486879 ACCAATCAGGGGAAAGGCAA 59.513 50.000 0.00 0.00 43.89 4.52
974 994 1.188863 CCAATCAGGGGAAAGGCAAG 58.811 55.000 0.00 0.00 0.00 4.01
989 1010 0.442699 GCAAGAAACGGTCGATCCAC 59.557 55.000 0.00 0.00 35.57 4.02
1038 1059 4.421479 CTCGCCTTGGTCGTCGCT 62.421 66.667 0.00 0.00 0.00 4.93
1042 1063 2.805353 CCTTGGTCGTCGCTGTCG 60.805 66.667 0.00 0.00 0.00 4.35
1043 1064 3.470567 CTTGGTCGTCGCTGTCGC 61.471 66.667 0.00 0.00 35.26 5.19
1149 1170 3.605749 GAGCCCCAAGTACAGCGCA 62.606 63.158 11.47 0.00 0.00 6.09
1601 1626 0.106318 GCCCCGGACTCCTTCTACTA 60.106 60.000 0.73 0.00 0.00 1.82
1951 1976 1.760613 TCGACATGTGATCTTACCCCC 59.239 52.381 1.15 0.00 0.00 5.40
2011 2036 6.755141 GTGTTACTGTATTCGTGTATCACCAT 59.245 38.462 0.00 0.00 33.92 3.55
2014 2039 5.592054 ACTGTATTCGTGTATCACCATCAG 58.408 41.667 0.00 0.00 0.00 2.90
2086 2111 6.671190 TGCTTTACTCAGATGAAACATTGTG 58.329 36.000 0.00 0.00 0.00 3.33
2116 2141 3.758023 TCTTGGCATCATACCTTGTTGTG 59.242 43.478 0.00 0.00 0.00 3.33
2120 2145 3.377172 GGCATCATACCTTGTTGTGGTAC 59.623 47.826 0.00 0.00 42.12 3.34
2122 2147 4.332819 GCATCATACCTTGTTGTGGTACTC 59.667 45.833 0.00 0.00 42.12 2.59
2123 2148 4.546829 TCATACCTTGTTGTGGTACTCC 57.453 45.455 0.00 0.00 42.12 3.85
2139 2164 7.223260 TGGTACTCCACTAATTATACGGATG 57.777 40.000 0.00 0.00 39.03 3.51
2150 2175 9.698309 ACTAATTATACGGATGATCTGAAACTG 57.302 33.333 8.51 0.00 0.00 3.16
2165 2190 9.270640 GATCTGAAACTGTGAATCATATTAGCT 57.729 33.333 0.00 0.00 0.00 3.32
2167 2192 9.534565 TCTGAAACTGTGAATCATATTAGCTAC 57.465 33.333 0.00 0.00 0.00 3.58
2168 2193 9.539825 CTGAAACTGTGAATCATATTAGCTACT 57.460 33.333 0.00 0.00 0.00 2.57
2169 2194 9.534565 TGAAACTGTGAATCATATTAGCTACTC 57.465 33.333 0.00 0.00 0.00 2.59
2170 2195 9.757227 GAAACTGTGAATCATATTAGCTACTCT 57.243 33.333 0.00 0.00 0.00 3.24
2202 2227 1.117150 CCAAGATTCCAGGGCCAATG 58.883 55.000 6.18 1.91 0.00 2.82
2213 2238 4.012374 CCAGGGCCAATGCAGTAATATAG 58.988 47.826 6.18 0.00 40.13 1.31
2214 2239 4.507335 CCAGGGCCAATGCAGTAATATAGT 60.507 45.833 6.18 0.00 40.13 2.12
2216 2241 5.643777 CAGGGCCAATGCAGTAATATAGTAC 59.356 44.000 6.18 2.07 40.13 2.73
2219 2244 7.236847 AGGGCCAATGCAGTAATATAGTACTAA 59.763 37.037 12.24 5.19 40.13 2.24
2220 2245 7.333672 GGGCCAATGCAGTAATATAGTACTAAC 59.666 40.741 12.24 8.63 40.13 2.34
2221 2246 8.095169 GGCCAATGCAGTAATATAGTACTAACT 58.905 37.037 12.24 2.88 40.13 2.24
2260 2285 9.053840 CAGTCTAGTTTATCTGTACTCCGAATA 57.946 37.037 0.00 0.00 0.00 1.75
2267 2292 5.699097 ATCTGTACTCCGAATAGCTTCTC 57.301 43.478 0.00 0.00 0.00 2.87
2279 2304 6.036191 CCGAATAGCTTCTCAACTTTCCTTAC 59.964 42.308 0.00 0.00 0.00 2.34
2281 2306 4.984146 AGCTTCTCAACTTTCCTTACCT 57.016 40.909 0.00 0.00 0.00 3.08
2282 2307 5.311844 AGCTTCTCAACTTTCCTTACCTT 57.688 39.130 0.00 0.00 0.00 3.50
2283 2308 6.435292 AGCTTCTCAACTTTCCTTACCTTA 57.565 37.500 0.00 0.00 0.00 2.69
2284 2309 6.838382 AGCTTCTCAACTTTCCTTACCTTAA 58.162 36.000 0.00 0.00 0.00 1.85
2306 2331 0.874390 GATGCAACGAACCAGAAGCA 59.126 50.000 0.00 0.00 36.34 3.91
2312 2337 2.844122 ACGAACCAGAAGCACAAAAC 57.156 45.000 0.00 0.00 0.00 2.43
2354 2379 3.587061 AGTGAACACATACATTCCCCAGA 59.413 43.478 7.68 0.00 0.00 3.86
2364 2389 8.917088 CACATACATTCCCCAGATTTCTTATTT 58.083 33.333 0.00 0.00 0.00 1.40
2405 2430 4.945543 TCAGAATGAATAGCACATGCAACT 59.054 37.500 6.64 0.00 45.97 3.16
2406 2431 5.034797 CAGAATGAATAGCACATGCAACTG 58.965 41.667 6.64 0.00 41.13 3.16
2407 2432 2.925578 TGAATAGCACATGCAACTGC 57.074 45.000 6.64 10.30 45.16 4.40
2408 2433 2.439409 TGAATAGCACATGCAACTGCT 58.561 42.857 21.38 21.38 45.76 4.24
2445 2470 1.490490 TCTCACAAGGTCAGCCAACTT 59.510 47.619 0.00 0.00 37.19 2.66
2447 2472 1.211703 TCACAAGGTCAGCCAACTTCA 59.788 47.619 0.00 0.00 37.19 3.02
2474 2499 2.101917 AGCTTTGCTTGTGTTCTGCAAT 59.898 40.909 0.00 0.00 44.55 3.56
2516 2542 0.606604 GCCGGCGATTATCCCTTCTA 59.393 55.000 12.58 0.00 0.00 2.10
2527 2553 7.704472 GCGATTATCCCTTCTATGATAACTGAG 59.296 40.741 0.00 0.00 36.55 3.35
2657 4154 6.100004 GTCTCGAAGACATCACAAGGATTAA 58.900 40.000 9.30 0.00 44.45 1.40
2675 4172 7.352719 GGATTAAGAAGCCTACATTATCACG 57.647 40.000 0.00 0.00 33.11 4.35
2677 4174 7.819900 GGATTAAGAAGCCTACATTATCACGAT 59.180 37.037 0.00 0.00 33.11 3.73
2678 4175 9.856488 GATTAAGAAGCCTACATTATCACGATA 57.144 33.333 0.00 0.00 0.00 2.92
2679 4176 9.640963 ATTAAGAAGCCTACATTATCACGATAC 57.359 33.333 0.00 0.00 0.00 2.24
2685 4460 5.288712 GCCTACATTATCACGATACCGAATG 59.711 44.000 0.00 0.00 39.50 2.67
2757 4532 6.305693 ACAAGGAGAAATTCGAAGTTTCTG 57.694 37.500 26.19 19.10 43.80 3.02
2830 4625 3.873910 TCCAGCTAAGTTGATGCTTACC 58.126 45.455 0.00 0.00 34.51 2.85
2834 4629 2.627945 CTAAGTTGATGCTTACCGCCA 58.372 47.619 0.00 0.00 38.05 5.69
2839 4634 1.450312 GATGCTTACCGCCACTGCT 60.450 57.895 0.00 0.00 38.05 4.24
2875 4670 6.707599 AACTATTGTTTCTCTACTCAACGC 57.292 37.500 0.00 0.00 31.37 4.84
2876 4671 6.026947 ACTATTGTTTCTCTACTCAACGCT 57.973 37.500 0.00 0.00 0.00 5.07
2877 4672 6.456501 ACTATTGTTTCTCTACTCAACGCTT 58.543 36.000 0.00 0.00 0.00 4.68
2878 4673 6.929606 ACTATTGTTTCTCTACTCAACGCTTT 59.070 34.615 0.00 0.00 0.00 3.51
2879 4674 5.403897 TTGTTTCTCTACTCAACGCTTTG 57.596 39.130 0.00 0.00 0.00 2.77
2880 4675 4.439057 TGTTTCTCTACTCAACGCTTTGT 58.561 39.130 2.56 0.00 34.02 2.83
2881 4676 4.873827 TGTTTCTCTACTCAACGCTTTGTT 59.126 37.500 2.56 0.00 43.09 2.83
2882 4677 5.353123 TGTTTCTCTACTCAACGCTTTGTTT 59.647 36.000 2.56 0.00 39.29 2.83
2883 4678 6.535865 TGTTTCTCTACTCAACGCTTTGTTTA 59.464 34.615 2.56 0.00 39.29 2.01
2884 4679 6.520792 TTCTCTACTCAACGCTTTGTTTAC 57.479 37.500 2.56 0.00 39.29 2.01
2885 4680 5.593968 TCTCTACTCAACGCTTTGTTTACA 58.406 37.500 2.56 0.00 39.29 2.41
2886 4681 6.220930 TCTCTACTCAACGCTTTGTTTACAT 58.779 36.000 2.56 0.00 39.29 2.29
2887 4682 6.704493 TCTCTACTCAACGCTTTGTTTACATT 59.296 34.615 2.56 0.00 39.29 2.71
2888 4683 6.655062 TCTACTCAACGCTTTGTTTACATTG 58.345 36.000 2.56 0.00 39.29 2.82
2889 4684 5.493133 ACTCAACGCTTTGTTTACATTGA 57.507 34.783 2.56 0.00 39.29 2.57
2890 4685 5.885881 ACTCAACGCTTTGTTTACATTGAA 58.114 33.333 2.56 0.00 39.29 2.69
2891 4686 6.326375 ACTCAACGCTTTGTTTACATTGAAA 58.674 32.000 2.56 0.00 39.29 2.69
2892 4687 6.978080 ACTCAACGCTTTGTTTACATTGAAAT 59.022 30.769 2.56 0.00 39.29 2.17
2893 4688 7.167468 ACTCAACGCTTTGTTTACATTGAAATC 59.833 33.333 2.56 0.00 39.29 2.17
2894 4689 6.419413 TCAACGCTTTGTTTACATTGAAATCC 59.581 34.615 2.56 0.00 39.29 3.01
2895 4690 6.084326 ACGCTTTGTTTACATTGAAATCCT 57.916 33.333 0.00 0.00 0.00 3.24
2896 4691 5.920273 ACGCTTTGTTTACATTGAAATCCTG 59.080 36.000 0.00 0.00 0.00 3.86
2897 4692 5.345741 CGCTTTGTTTACATTGAAATCCTGG 59.654 40.000 0.00 0.00 0.00 4.45
2898 4693 6.454795 GCTTTGTTTACATTGAAATCCTGGA 58.545 36.000 0.00 0.00 0.00 3.86
2899 4694 6.928492 GCTTTGTTTACATTGAAATCCTGGAA 59.072 34.615 0.00 0.00 0.00 3.53
2900 4695 7.440856 GCTTTGTTTACATTGAAATCCTGGAAA 59.559 33.333 0.00 0.00 0.00 3.13
2901 4696 8.655651 TTTGTTTACATTGAAATCCTGGAAAC 57.344 30.769 0.00 11.26 41.84 2.78
2902 4697 7.595819 TGTTTACATTGAAATCCTGGAAACT 57.404 32.000 0.00 0.00 41.95 2.66
2903 4698 8.698973 TGTTTACATTGAAATCCTGGAAACTA 57.301 30.769 0.00 0.00 41.95 2.24
2904 4699 8.792633 TGTTTACATTGAAATCCTGGAAACTAG 58.207 33.333 0.00 0.00 41.95 2.57
2905 4700 8.793592 GTTTACATTGAAATCCTGGAAACTAGT 58.206 33.333 0.00 0.00 39.53 2.57
2908 4703 8.336801 ACATTGAAATCCTGGAAACTAGTAAC 57.663 34.615 0.00 0.00 0.00 2.50
2909 4704 7.393515 ACATTGAAATCCTGGAAACTAGTAACC 59.606 37.037 0.00 3.46 0.00 2.85
2910 4705 5.812286 TGAAATCCTGGAAACTAGTAACCC 58.188 41.667 0.00 8.06 0.00 4.11
2911 4706 5.550403 TGAAATCCTGGAAACTAGTAACCCT 59.450 40.000 0.00 0.00 0.00 4.34
2912 4707 6.045106 TGAAATCCTGGAAACTAGTAACCCTT 59.955 38.462 0.00 0.00 0.00 3.95
2913 4708 5.695424 ATCCTGGAAACTAGTAACCCTTC 57.305 43.478 0.00 5.91 0.00 3.46
2914 4709 4.759953 TCCTGGAAACTAGTAACCCTTCT 58.240 43.478 13.41 0.00 0.00 2.85
2915 4710 4.530946 TCCTGGAAACTAGTAACCCTTCTG 59.469 45.833 13.41 4.32 0.00 3.02
2916 4711 4.286291 CCTGGAAACTAGTAACCCTTCTGT 59.714 45.833 13.41 0.00 0.00 3.41
2917 4712 5.221864 CCTGGAAACTAGTAACCCTTCTGTT 60.222 44.000 13.41 0.00 0.00 3.16
2918 4713 5.617252 TGGAAACTAGTAACCCTTCTGTTG 58.383 41.667 13.41 0.00 0.00 3.33
2919 4714 4.454847 GGAAACTAGTAACCCTTCTGTTGC 59.545 45.833 0.00 0.00 0.00 4.17
2920 4715 3.697619 ACTAGTAACCCTTCTGTTGCC 57.302 47.619 0.00 0.00 32.04 4.52
2921 4716 2.976882 ACTAGTAACCCTTCTGTTGCCA 59.023 45.455 0.00 0.00 32.04 4.92
2922 4717 3.393278 ACTAGTAACCCTTCTGTTGCCAA 59.607 43.478 0.00 0.00 32.04 4.52
2923 4718 3.525800 AGTAACCCTTCTGTTGCCAAT 57.474 42.857 0.00 0.00 32.04 3.16
2924 4719 4.650972 AGTAACCCTTCTGTTGCCAATA 57.349 40.909 0.00 0.00 32.04 1.90
2925 4720 4.589908 AGTAACCCTTCTGTTGCCAATAG 58.410 43.478 0.00 0.00 32.04 1.73
2926 4721 1.839424 ACCCTTCTGTTGCCAATAGC 58.161 50.000 0.00 0.00 44.14 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.031414 GGGGGTACTAAGGAGAGGCA 60.031 60.000 0.00 0.00 0.00 4.75
1 2 2.837411 GGGGGTACTAAGGAGAGGC 58.163 63.158 0.00 0.00 0.00 4.70
16 17 2.100989 GTCTGACAGTAGTGTAGGGGG 58.899 57.143 2.39 0.00 36.88 5.40
17 18 3.088789 AGTCTGACAGTAGTGTAGGGG 57.911 52.381 10.88 0.00 36.88 4.79
18 19 5.498393 TCTAAGTCTGACAGTAGTGTAGGG 58.502 45.833 10.88 0.00 36.88 3.53
19 20 6.127952 GGTTCTAAGTCTGACAGTAGTGTAGG 60.128 46.154 10.88 0.00 36.88 3.18
20 21 6.430308 TGGTTCTAAGTCTGACAGTAGTGTAG 59.570 42.308 10.88 2.46 36.88 2.74
21 22 6.206243 GTGGTTCTAAGTCTGACAGTAGTGTA 59.794 42.308 10.88 0.00 36.88 2.90
22 23 5.009811 GTGGTTCTAAGTCTGACAGTAGTGT 59.990 44.000 10.88 1.90 40.71 3.55
23 24 5.462405 GTGGTTCTAAGTCTGACAGTAGTG 58.538 45.833 10.88 0.00 0.00 2.74
24 25 4.215827 CGTGGTTCTAAGTCTGACAGTAGT 59.784 45.833 10.88 0.00 0.00 2.73
25 26 4.454847 TCGTGGTTCTAAGTCTGACAGTAG 59.545 45.833 10.88 10.72 0.00 2.57
26 27 4.214971 GTCGTGGTTCTAAGTCTGACAGTA 59.785 45.833 10.88 1.08 0.00 2.74
27 28 3.004524 GTCGTGGTTCTAAGTCTGACAGT 59.995 47.826 10.88 0.00 0.00 3.55
28 29 3.004419 TGTCGTGGTTCTAAGTCTGACAG 59.996 47.826 10.88 0.00 31.99 3.51
29 30 2.953648 TGTCGTGGTTCTAAGTCTGACA 59.046 45.455 10.88 0.00 33.14 3.58
30 31 3.252701 TCTGTCGTGGTTCTAAGTCTGAC 59.747 47.826 0.00 0.00 0.00 3.51
31 32 3.252701 GTCTGTCGTGGTTCTAAGTCTGA 59.747 47.826 0.00 0.00 0.00 3.27
32 33 3.566523 GTCTGTCGTGGTTCTAAGTCTG 58.433 50.000 0.00 0.00 0.00 3.51
33 34 2.225963 CGTCTGTCGTGGTTCTAAGTCT 59.774 50.000 0.00 0.00 34.52 3.24
34 35 2.582687 CGTCTGTCGTGGTTCTAAGTC 58.417 52.381 0.00 0.00 34.52 3.01
35 36 1.268899 CCGTCTGTCGTGGTTCTAAGT 59.731 52.381 0.00 0.00 37.94 2.24
36 37 1.978542 CCGTCTGTCGTGGTTCTAAG 58.021 55.000 0.00 0.00 37.94 2.18
37 38 0.038892 GCCGTCTGTCGTGGTTCTAA 60.039 55.000 0.00 0.00 37.94 2.10
38 39 1.582968 GCCGTCTGTCGTGGTTCTA 59.417 57.895 0.00 0.00 37.94 2.10
39 40 2.338984 GCCGTCTGTCGTGGTTCT 59.661 61.111 0.00 0.00 37.94 3.01
40 41 3.103911 CGCCGTCTGTCGTGGTTC 61.104 66.667 0.00 0.00 37.94 3.62
41 42 3.553437 CTCGCCGTCTGTCGTGGTT 62.553 63.158 0.00 0.00 37.94 3.67
42 43 4.039357 CTCGCCGTCTGTCGTGGT 62.039 66.667 0.00 0.00 37.94 4.16
113 114 2.355193 GCGCTCTTCCTCCACCTCT 61.355 63.158 0.00 0.00 0.00 3.69
174 175 1.345741 CTACATCATCTGCCCACCGAT 59.654 52.381 0.00 0.00 0.00 4.18
175 176 0.752658 CTACATCATCTGCCCACCGA 59.247 55.000 0.00 0.00 0.00 4.69
277 279 1.335810 TCTAAGCGTCGCCATTATCGT 59.664 47.619 14.86 0.00 0.00 3.73
279 281 1.721926 GCTCTAAGCGTCGCCATTATC 59.278 52.381 14.86 0.00 0.00 1.75
281 283 0.458260 TGCTCTAAGCGTCGCCATTA 59.542 50.000 14.86 6.18 46.26 1.90
282 284 0.807667 CTGCTCTAAGCGTCGCCATT 60.808 55.000 14.86 5.19 46.26 3.16
312 314 0.322187 AATAAACGCGCCTCCCAACT 60.322 50.000 5.73 0.00 0.00 3.16
403 410 9.834628 AATTTTGAAAGCATGCATTCAAATTAG 57.165 25.926 41.30 0.00 46.07 1.73
508 516 7.803189 GCGAAAGTAATTGATTTTCTTGACTCA 59.197 33.333 0.00 0.00 32.89 3.41
546 557 6.007076 TGTTTTTACTCCAGTGATGGCAATA 58.993 36.000 0.00 0.00 0.00 1.90
554 565 7.042321 CGACATAAAGTGTTTTTACTCCAGTGA 60.042 37.037 0.00 0.00 42.36 3.41
555 566 7.069569 CGACATAAAGTGTTTTTACTCCAGTG 58.930 38.462 0.00 0.00 42.36 3.66
556 567 6.293244 GCGACATAAAGTGTTTTTACTCCAGT 60.293 38.462 0.00 0.00 42.36 4.00
557 568 6.073222 AGCGACATAAAGTGTTTTTACTCCAG 60.073 38.462 0.00 0.00 42.36 3.86
558 569 5.761234 AGCGACATAAAGTGTTTTTACTCCA 59.239 36.000 0.00 0.00 42.36 3.86
559 570 6.073440 TGAGCGACATAAAGTGTTTTTACTCC 60.073 38.462 0.00 0.00 42.36 3.85
560 571 6.884187 TGAGCGACATAAAGTGTTTTTACTC 58.116 36.000 0.00 0.00 42.36 2.59
561 572 6.854496 TGAGCGACATAAAGTGTTTTTACT 57.146 33.333 0.00 0.00 42.36 2.24
562 573 6.084551 CGTTGAGCGACATAAAGTGTTTTTAC 59.915 38.462 0.00 0.00 42.36 2.01
563 574 6.130723 CGTTGAGCGACATAAAGTGTTTTTA 58.869 36.000 0.00 0.00 42.36 1.52
564 575 4.967575 CGTTGAGCGACATAAAGTGTTTTT 59.032 37.500 0.00 0.00 42.36 1.94
565 576 4.523813 CGTTGAGCGACATAAAGTGTTTT 58.476 39.130 0.00 0.00 42.36 2.43
566 577 3.059188 CCGTTGAGCGACATAAAGTGTTT 60.059 43.478 0.00 0.00 42.36 2.83
567 578 2.478894 CCGTTGAGCGACATAAAGTGTT 59.521 45.455 0.00 0.00 42.36 3.32
568 579 2.066262 CCGTTGAGCGACATAAAGTGT 58.934 47.619 0.00 0.00 45.83 3.55
569 580 2.092211 GTCCGTTGAGCGACATAAAGTG 59.908 50.000 0.00 0.00 44.77 3.16
570 581 2.288579 TGTCCGTTGAGCGACATAAAGT 60.289 45.455 0.00 0.00 44.77 2.66
571 582 2.333926 TGTCCGTTGAGCGACATAAAG 58.666 47.619 0.00 0.00 44.77 1.85
582 593 2.158559 CACCCATTTCATGTCCGTTGA 58.841 47.619 0.00 0.00 0.00 3.18
585 596 2.286365 AACACCCATTTCATGTCCGT 57.714 45.000 0.00 0.00 0.00 4.69
586 597 2.352617 CCAAACACCCATTTCATGTCCG 60.353 50.000 0.00 0.00 0.00 4.79
587 598 2.632512 ACCAAACACCCATTTCATGTCC 59.367 45.455 0.00 0.00 0.00 4.02
876 896 1.597027 ACGAAACTCGGTTGCTGGG 60.597 57.895 0.67 0.00 45.59 4.45
882 902 0.390124 TACAGGCACGAAACTCGGTT 59.610 50.000 0.67 0.00 45.59 4.44
927 947 3.100191 GGAATCGATCGCGCGAGG 61.100 66.667 36.99 29.38 44.26 4.63
964 984 0.237498 CGACCGTTTCTTGCCTTTCC 59.763 55.000 0.00 0.00 0.00 3.13
968 988 0.391263 GGATCGACCGTTTCTTGCCT 60.391 55.000 0.00 0.00 0.00 4.75
970 990 0.442699 GTGGATCGACCGTTTCTTGC 59.557 55.000 0.00 0.00 42.61 4.01
971 991 0.713883 CGTGGATCGACCGTTTCTTG 59.286 55.000 1.93 0.00 42.86 3.02
973 993 1.214589 CCGTGGATCGACCGTTTCT 59.785 57.895 1.93 0.00 42.86 2.52
974 994 1.080298 ACCGTGGATCGACCGTTTC 60.080 57.895 1.93 0.00 42.86 2.78
1025 1046 2.805353 CGACAGCGACGACCAAGG 60.805 66.667 0.00 0.00 40.82 3.61
1601 1626 2.359230 GCTTCCGCTTGAGCTGGT 60.359 61.111 0.00 0.00 39.32 4.00
1951 1976 9.429359 CTAGGTTAATTAGCACTCCATCTAATG 57.571 37.037 1.55 0.00 36.10 1.90
1962 1987 9.698617 CACGTTAATTTCTAGGTTAATTAGCAC 57.301 33.333 1.55 0.00 31.12 4.40
2014 2039 2.733517 GAGATTAGCTGGTCAGTACGC 58.266 52.381 0.00 0.00 0.00 4.42
2086 2111 5.619220 AGGTATGATGCCAAGATCTTTCTC 58.381 41.667 4.86 1.19 0.00 2.87
2116 2141 7.458409 TCATCCGTATAATTAGTGGAGTACC 57.542 40.000 8.53 0.00 31.10 3.34
2120 2145 8.056407 TCAGATCATCCGTATAATTAGTGGAG 57.944 38.462 0.00 3.17 31.10 3.86
2122 2147 8.926710 GTTTCAGATCATCCGTATAATTAGTGG 58.073 37.037 0.00 0.00 0.00 4.00
2123 2148 9.698309 AGTTTCAGATCATCCGTATAATTAGTG 57.302 33.333 0.00 0.00 0.00 2.74
2134 2159 4.872124 TGATTCACAGTTTCAGATCATCCG 59.128 41.667 0.00 0.00 0.00 4.18
2135 2160 6.939132 ATGATTCACAGTTTCAGATCATCC 57.061 37.500 0.00 0.00 0.00 3.51
2139 2164 9.270640 AGCTAATATGATTCACAGTTTCAGATC 57.729 33.333 0.00 0.00 0.00 2.75
2165 2190 3.026707 TGGCCAGCACAGTATAGAGTA 57.973 47.619 0.00 0.00 0.00 2.59
2166 2191 1.866015 TGGCCAGCACAGTATAGAGT 58.134 50.000 0.00 0.00 0.00 3.24
2167 2192 2.432146 TCTTGGCCAGCACAGTATAGAG 59.568 50.000 5.11 0.00 0.00 2.43
2168 2193 2.466846 TCTTGGCCAGCACAGTATAGA 58.533 47.619 5.11 0.00 0.00 1.98
2169 2194 2.988010 TCTTGGCCAGCACAGTATAG 57.012 50.000 5.11 0.00 0.00 1.31
2170 2195 3.433598 GGAATCTTGGCCAGCACAGTATA 60.434 47.826 5.11 0.00 0.00 1.47
2171 2196 2.648059 GAATCTTGGCCAGCACAGTAT 58.352 47.619 5.11 0.00 0.00 2.12
2250 2275 5.916661 AAGTTGAGAAGCTATTCGGAGTA 57.083 39.130 0.00 0.00 40.58 2.59
2255 2280 6.036191 GGTAAGGAAAGTTGAGAAGCTATTCG 59.964 42.308 0.00 0.00 40.58 3.34
2260 2285 4.984146 AGGTAAGGAAAGTTGAGAAGCT 57.016 40.909 0.00 0.00 0.00 3.74
2267 2292 7.601856 TGCATCAATTAAGGTAAGGAAAGTTG 58.398 34.615 0.00 0.00 0.00 3.16
2279 2304 4.155826 TCTGGTTCGTTGCATCAATTAAGG 59.844 41.667 0.00 0.00 0.00 2.69
2281 2306 5.697473 TTCTGGTTCGTTGCATCAATTAA 57.303 34.783 0.00 0.00 0.00 1.40
2282 2307 4.379394 GCTTCTGGTTCGTTGCATCAATTA 60.379 41.667 0.00 0.00 0.00 1.40
2283 2308 3.612479 GCTTCTGGTTCGTTGCATCAATT 60.612 43.478 0.00 0.00 0.00 2.32
2284 2309 2.095059 GCTTCTGGTTCGTTGCATCAAT 60.095 45.455 0.00 0.00 0.00 2.57
2306 2331 8.184304 TGCAGTATACCCAATTTTAGTTTTGT 57.816 30.769 0.00 0.00 0.00 2.83
2312 2337 7.624360 TCACTTGCAGTATACCCAATTTTAG 57.376 36.000 0.00 0.00 0.00 1.85
2354 2379 8.470002 GCTGTTAACAGGGATGAAATAAGAAAT 58.530 33.333 31.42 0.00 43.94 2.17
2364 2389 3.519107 TCTGATGCTGTTAACAGGGATGA 59.481 43.478 31.42 15.18 43.94 2.92
2405 2430 4.757594 AGAAAACATTGTTCAAGCAAGCA 58.242 34.783 1.83 0.00 0.00 3.91
2406 2431 4.805192 TGAGAAAACATTGTTCAAGCAAGC 59.195 37.500 1.83 0.00 0.00 4.01
2407 2432 5.806502 TGTGAGAAAACATTGTTCAAGCAAG 59.193 36.000 1.83 0.00 0.00 4.01
2408 2433 5.718146 TGTGAGAAAACATTGTTCAAGCAA 58.282 33.333 1.83 0.00 0.00 3.91
2468 2493 4.097437 AGTCACTGGATTTATGCATTGCAG 59.903 41.667 17.52 14.67 43.65 4.41
2474 2499 3.998913 TGGAGTCACTGGATTTATGCA 57.001 42.857 0.00 0.00 0.00 3.96
2657 4154 5.335740 CGGTATCGTGATAATGTAGGCTTCT 60.336 44.000 0.00 0.00 0.00 2.85
2671 4168 0.821517 AGTGCCATTCGGTATCGTGA 59.178 50.000 0.00 0.00 37.69 4.35
2672 4169 0.930310 CAGTGCCATTCGGTATCGTG 59.070 55.000 0.00 0.00 37.69 4.35
2673 4170 0.535335 ACAGTGCCATTCGGTATCGT 59.465 50.000 0.00 0.00 37.69 3.73
2675 4172 2.354821 GGAAACAGTGCCATTCGGTATC 59.645 50.000 0.00 0.00 33.28 2.24
2677 4174 1.816074 GGAAACAGTGCCATTCGGTA 58.184 50.000 0.00 0.00 33.28 4.02
2678 4175 1.234615 CGGAAACAGTGCCATTCGGT 61.235 55.000 0.00 0.00 33.28 4.69
2679 4176 0.953471 TCGGAAACAGTGCCATTCGG 60.953 55.000 0.00 0.00 0.00 4.30
2705 4480 7.605410 ATCTAAATAACACAAGTTGGTACCG 57.395 36.000 7.57 0.00 38.69 4.02
2750 4525 7.615365 TGTTATTTCTAATGATGGGCAGAAACT 59.385 33.333 0.00 0.00 39.20 2.66
2830 4625 0.460811 TGCTTGAGATAGCAGTGGCG 60.461 55.000 0.00 0.00 45.72 5.69
2872 4667 5.920273 CAGGATTTCAATGTAAACAAAGCGT 59.080 36.000 0.00 0.00 0.00 5.07
2873 4668 5.345741 CCAGGATTTCAATGTAAACAAAGCG 59.654 40.000 0.00 0.00 0.00 4.68
2874 4669 6.454795 TCCAGGATTTCAATGTAAACAAAGC 58.545 36.000 0.00 0.00 0.00 3.51
2875 4670 8.764287 GTTTCCAGGATTTCAATGTAAACAAAG 58.236 33.333 0.00 0.00 0.00 2.77
2876 4671 8.482128 AGTTTCCAGGATTTCAATGTAAACAAA 58.518 29.630 0.00 0.00 0.00 2.83
2877 4672 8.017418 AGTTTCCAGGATTTCAATGTAAACAA 57.983 30.769 0.00 0.00 0.00 2.83
2878 4673 7.595819 AGTTTCCAGGATTTCAATGTAAACA 57.404 32.000 0.00 0.00 0.00 2.83
2879 4674 8.793592 ACTAGTTTCCAGGATTTCAATGTAAAC 58.206 33.333 0.00 0.00 0.00 2.01
2880 4675 8.934023 ACTAGTTTCCAGGATTTCAATGTAAA 57.066 30.769 0.00 0.00 0.00 2.01
2882 4677 9.444600 GTTACTAGTTTCCAGGATTTCAATGTA 57.555 33.333 0.00 0.00 0.00 2.29
2883 4678 7.393515 GGTTACTAGTTTCCAGGATTTCAATGT 59.606 37.037 0.00 0.00 0.00 2.71
2884 4679 7.148069 GGGTTACTAGTTTCCAGGATTTCAATG 60.148 40.741 0.00 0.00 0.00 2.82
2885 4680 6.890268 GGGTTACTAGTTTCCAGGATTTCAAT 59.110 38.462 0.00 0.00 0.00 2.57
2886 4681 6.045106 AGGGTTACTAGTTTCCAGGATTTCAA 59.955 38.462 0.00 0.00 0.00 2.69
2887 4682 5.550403 AGGGTTACTAGTTTCCAGGATTTCA 59.450 40.000 0.00 0.00 0.00 2.69
2888 4683 6.063496 AGGGTTACTAGTTTCCAGGATTTC 57.937 41.667 0.00 0.00 0.00 2.17
2889 4684 6.274908 AGAAGGGTTACTAGTTTCCAGGATTT 59.725 38.462 0.00 0.00 0.00 2.17
2890 4685 5.791141 AGAAGGGTTACTAGTTTCCAGGATT 59.209 40.000 0.00 0.00 0.00 3.01
2891 4686 5.189934 CAGAAGGGTTACTAGTTTCCAGGAT 59.810 44.000 0.00 0.00 0.00 3.24
2892 4687 4.530946 CAGAAGGGTTACTAGTTTCCAGGA 59.469 45.833 0.00 0.00 0.00 3.86
2893 4688 4.286291 ACAGAAGGGTTACTAGTTTCCAGG 59.714 45.833 0.00 0.00 0.00 4.45
2894 4689 5.485209 ACAGAAGGGTTACTAGTTTCCAG 57.515 43.478 0.00 0.00 0.00 3.86
2895 4690 5.617252 CAACAGAAGGGTTACTAGTTTCCA 58.383 41.667 0.00 0.00 0.00 3.53
2896 4691 4.454847 GCAACAGAAGGGTTACTAGTTTCC 59.545 45.833 0.00 4.02 0.00 3.13
2897 4692 4.454847 GGCAACAGAAGGGTTACTAGTTTC 59.545 45.833 0.00 0.00 0.00 2.78
2898 4693 4.141344 TGGCAACAGAAGGGTTACTAGTTT 60.141 41.667 0.00 0.00 46.17 2.66
2899 4694 3.393278 TGGCAACAGAAGGGTTACTAGTT 59.607 43.478 0.00 0.00 46.17 2.24
2900 4695 2.976882 TGGCAACAGAAGGGTTACTAGT 59.023 45.455 0.00 0.00 46.17 2.57
2901 4696 3.695830 TGGCAACAGAAGGGTTACTAG 57.304 47.619 0.00 0.00 46.17 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.