Multiple sequence alignment - TraesCS4B01G118300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G118300 chr4B 100.000 4293 0 0 1 4293 138307480 138303188 0.000000e+00 7928.0
1 TraesCS4B01G118300 chr4B 100.000 3935 0 0 4599 8533 138302882 138298948 0.000000e+00 7267.0
2 TraesCS4B01G118300 chr4B 91.310 794 66 3 1053 1845 119858736 119859527 0.000000e+00 1081.0
3 TraesCS4B01G118300 chr4B 92.200 500 37 2 1928 2425 119866901 119867400 0.000000e+00 706.0
4 TraesCS4B01G118300 chr4B 96.341 246 4 2 6123 6367 551694716 551694957 4.800000e-107 399.0
5 TraesCS4B01G118300 chr4B 93.548 93 6 0 1837 1929 119866772 119866864 1.160000e-28 139.0
6 TraesCS4B01G118300 chr4B 91.667 84 4 1 7763 7843 137742685 137742602 7.000000e-21 113.0
7 TraesCS4B01G118300 chr4B 94.286 70 2 2 7971 8040 138287888 138287821 1.170000e-18 106.0
8 TraesCS4B01G118300 chr4B 97.436 39 1 0 7714 7752 137742818 137742780 5.530000e-07 67.6
9 TraesCS4B01G118300 chr4A 96.249 2373 67 14 1928 4282 479412761 479415129 0.000000e+00 3869.0
10 TraesCS4B01G118300 chr4A 98.058 1493 23 5 4637 6127 479416398 479417886 0.000000e+00 2591.0
11 TraesCS4B01G118300 chr4A 95.556 1440 52 10 6365 7801 479417885 479419315 0.000000e+00 2294.0
12 TraesCS4B01G118300 chr4A 92.369 1127 63 11 2930 4041 497819878 497818760 0.000000e+00 1583.0
13 TraesCS4B01G118300 chr4A 93.981 947 44 1 4651 5597 497815559 497814626 0.000000e+00 1421.0
14 TraesCS4B01G118300 chr4A 95.526 827 23 4 3468 4281 479415141 479415966 0.000000e+00 1310.0
15 TraesCS4B01G118300 chr4A 96.517 689 24 0 1241 1929 479412036 479412724 0.000000e+00 1140.0
16 TraesCS4B01G118300 chr4A 95.827 695 23 5 671 1361 479411347 479412039 0.000000e+00 1118.0
17 TraesCS4B01G118300 chr4A 93.514 555 33 2 2367 2918 497859873 497859319 0.000000e+00 822.0
18 TraesCS4B01G118300 chr4A 80.179 560 77 22 7217 7752 497814401 497813852 1.040000e-103 388.0
19 TraesCS4B01G118300 chr4A 81.388 317 46 11 8220 8533 374691149 374691455 6.620000e-61 246.0
20 TraesCS4B01G118300 chr4A 95.652 46 2 0 7874 7919 479419459 479419504 3.300000e-09 75.0
21 TraesCS4B01G118300 chr4D 96.248 2372 63 13 1928 4284 96911029 96908669 0.000000e+00 3864.0
22 TraesCS4B01G118300 chr4D 98.257 1492 23 3 4637 6127 96908362 96906873 0.000000e+00 2608.0
23 TraesCS4B01G118300 chr4D 97.165 1270 29 6 666 1929 96912334 96911066 0.000000e+00 2139.0
24 TraesCS4B01G118300 chr4D 96.071 1298 48 2 6365 7661 96906874 96905579 0.000000e+00 2111.0
25 TraesCS4B01G118300 chr4D 80.513 390 59 14 8092 8474 1158506 1158885 5.040000e-72 283.0
26 TraesCS4B01G118300 chr4D 91.473 129 11 0 7874 8002 96905497 96905369 2.450000e-40 178.0
27 TraesCS4B01G118300 chr4D 91.111 45 1 3 7997 8040 96905092 96905050 3.330000e-04 58.4
28 TraesCS4B01G118300 chr5B 97.518 685 14 2 1 682 701214720 701215404 0.000000e+00 1168.0
29 TraesCS4B01G118300 chr5B 96.361 687 22 2 1 684 268562501 268563187 0.000000e+00 1127.0
30 TraesCS4B01G118300 chr5B 83.264 962 131 19 4637 5590 93459404 93460343 0.000000e+00 857.0
31 TraesCS4B01G118300 chr5B 93.504 508 25 3 8034 8533 557321533 557321026 0.000000e+00 749.0
32 TraesCS4B01G118300 chr5B 94.138 290 10 2 8032 8314 557316452 557316163 1.320000e-117 435.0
33 TraesCS4B01G118300 chr5B 82.278 158 20 6 6531 6685 93467679 93467831 6.950000e-26 130.0
34 TraesCS4B01G118300 chr3A 80.129 1701 219 65 1931 3587 410113622 410111997 0.000000e+00 1158.0
35 TraesCS4B01G118300 chr3A 90.290 793 69 7 4637 5427 410111164 410110378 0.000000e+00 1031.0
36 TraesCS4B01G118300 chr3A 80.344 1221 185 35 6364 7557 410109516 410108324 0.000000e+00 874.0
37 TraesCS4B01G118300 chr3A 81.679 1048 123 33 927 1929 410114690 410113667 0.000000e+00 808.0
38 TraesCS4B01G118300 chr3A 80.492 610 110 9 1321 1926 419332814 419333418 7.810000e-125 459.0
39 TraesCS4B01G118300 chr3A 94.048 252 13 2 6117 6367 603307473 603307723 1.740000e-101 381.0
40 TraesCS4B01G118300 chr2B 97.337 676 15 2 1 673 634966422 634967097 0.000000e+00 1146.0
41 TraesCS4B01G118300 chr2B 96.916 681 18 2 1 678 357879576 357880256 0.000000e+00 1138.0
42 TraesCS4B01G118300 chr2B 96.889 675 18 2 1 672 714085295 714085969 0.000000e+00 1127.0
43 TraesCS4B01G118300 chr2B 94.083 507 22 3 8034 8533 571151940 571151435 0.000000e+00 763.0
44 TraesCS4B01G118300 chr2B 88.274 452 42 9 8084 8533 704908052 704907610 1.630000e-146 531.0
45 TraesCS4B01G118300 chr2B 92.388 289 16 2 8032 8314 571146847 571146559 2.870000e-109 407.0
46 TraesCS4B01G118300 chr2B 88.966 290 20 6 8032 8315 704903060 704902777 1.760000e-91 348.0
47 TraesCS4B01G118300 chr6B 97.470 672 14 2 1 669 133215081 133215752 0.000000e+00 1144.0
48 TraesCS4B01G118300 chr6B 96.582 673 20 2 1 670 116292756 116292084 0.000000e+00 1112.0
49 TraesCS4B01G118300 chr6B 88.063 511 49 6 8034 8533 328354873 328355382 5.700000e-166 595.0
50 TraesCS4B01G118300 chr6B 87.415 294 26 4 8032 8315 328367521 328367813 2.300000e-85 327.0
51 TraesCS4B01G118300 chr3B 96.889 675 15 3 1 669 454892175 454892849 0.000000e+00 1125.0
52 TraesCS4B01G118300 chr3B 95.942 690 20 5 1 684 689293312 689292625 0.000000e+00 1112.0
53 TraesCS4B01G118300 chr3B 89.924 794 71 8 4637 5427 401806765 401805978 0.000000e+00 1014.0
54 TraesCS4B01G118300 chr3B 81.462 1122 123 49 860 1929 401810150 401809062 0.000000e+00 841.0
55 TraesCS4B01G118300 chr3B 81.951 892 101 29 1928 2815 401809020 401808185 0.000000e+00 701.0
56 TraesCS4B01G118300 chr3B 80.941 808 130 19 4637 5434 406651441 406652234 1.220000e-172 617.0
57 TraesCS4B01G118300 chr3B 82.003 639 84 20 6364 6981 401805117 401804489 1.640000e-141 514.0
58 TraesCS4B01G118300 chr3B 81.015 611 105 10 1321 1926 406649922 406650526 7.750000e-130 475.0
59 TraesCS4B01G118300 chr3B 91.791 268 20 2 6126 6392 115791184 115791450 1.050000e-98 372.0
60 TraesCS4B01G118300 chr3B 78.066 579 84 32 3035 3587 401808146 401807585 8.260000e-85 326.0
61 TraesCS4B01G118300 chr3D 79.282 1699 229 71 1928 3581 317199786 317201406 0.000000e+00 1074.0
62 TraesCS4B01G118300 chr3D 90.633 790 67 6 4637 5425 317202615 317203398 0.000000e+00 1042.0
63 TraesCS4B01G118300 chr3D 79.919 1240 141 65 737 1913 317198529 317199723 0.000000e+00 811.0
64 TraesCS4B01G118300 chr3D 79.627 1232 170 51 6364 7564 317204222 317205403 0.000000e+00 809.0
65 TraesCS4B01G118300 chr7B 85.219 866 116 11 4637 5496 665542868 665542009 0.000000e+00 880.0
66 TraesCS4B01G118300 chr7B 80.734 218 31 10 1471 1680 23248114 23248328 8.870000e-35 159.0
67 TraesCS4B01G118300 chr7B 77.542 236 37 12 6548 6782 23255844 23256064 2.500000e-25 128.0
68 TraesCS4B01G118300 chr7B 87.500 64 8 0 5875 5938 23255548 23255611 3.300000e-09 75.0
69 TraesCS4B01G118300 chr2A 95.219 251 11 1 6116 6366 490609773 490610022 6.210000e-106 396.0
70 TraesCS4B01G118300 chr7A 95.851 241 10 0 6126 6366 560393083 560392843 2.890000e-104 390.0
71 TraesCS4B01G118300 chr7A 94.071 253 14 1 6118 6370 5188787 5188536 4.830000e-102 383.0
72 TraesCS4B01G118300 chr7A 92.135 267 17 4 6106 6369 62745353 62745088 2.910000e-99 374.0
73 TraesCS4B01G118300 chr1A 94.466 253 13 1 6116 6368 93674611 93674360 1.040000e-103 388.0
74 TraesCS4B01G118300 chr2D 94.048 252 12 2 6125 6376 267844107 267843859 6.250000e-101 379.0
75 TraesCS4B01G118300 chr7D 76.842 475 77 30 8078 8533 8811664 8812124 3.980000e-58 237.0
76 TraesCS4B01G118300 chr7D 78.462 260 45 10 8274 8533 564069838 564069590 8.870000e-35 159.0
77 TraesCS4B01G118300 chr7D 100.000 29 0 0 7765 7793 393608995 393609023 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G118300 chr4B 138298948 138307480 8532 True 7597.500000 7928 100.000000 1 8533 2 chr4B.!!$R3 8532
1 TraesCS4B01G118300 chr4B 119858736 119859527 791 False 1081.000000 1081 91.310000 1053 1845 1 chr4B.!!$F1 792
2 TraesCS4B01G118300 chr4B 119866772 119867400 628 False 422.500000 706 92.874000 1837 2425 2 chr4B.!!$F3 588
3 TraesCS4B01G118300 chr4A 479411347 479419504 8157 False 1771.000000 3869 96.197857 671 7919 7 chr4A.!!$F2 7248
4 TraesCS4B01G118300 chr4A 497813852 497819878 6026 True 1130.666667 1583 88.843000 2930 7752 3 chr4A.!!$R2 4822
5 TraesCS4B01G118300 chr4A 497859319 497859873 554 True 822.000000 822 93.514000 2367 2918 1 chr4A.!!$R1 551
6 TraesCS4B01G118300 chr4D 96905050 96912334 7284 True 1826.400000 3864 95.054167 666 8040 6 chr4D.!!$R1 7374
7 TraesCS4B01G118300 chr5B 701214720 701215404 684 False 1168.000000 1168 97.518000 1 682 1 chr5B.!!$F4 681
8 TraesCS4B01G118300 chr5B 268562501 268563187 686 False 1127.000000 1127 96.361000 1 684 1 chr5B.!!$F3 683
9 TraesCS4B01G118300 chr5B 93459404 93460343 939 False 857.000000 857 83.264000 4637 5590 1 chr5B.!!$F1 953
10 TraesCS4B01G118300 chr5B 557321026 557321533 507 True 749.000000 749 93.504000 8034 8533 1 chr5B.!!$R2 499
11 TraesCS4B01G118300 chr3A 410108324 410114690 6366 True 967.750000 1158 83.110500 927 7557 4 chr3A.!!$R1 6630
12 TraesCS4B01G118300 chr3A 419332814 419333418 604 False 459.000000 459 80.492000 1321 1926 1 chr3A.!!$F1 605
13 TraesCS4B01G118300 chr2B 634966422 634967097 675 False 1146.000000 1146 97.337000 1 673 1 chr2B.!!$F2 672
14 TraesCS4B01G118300 chr2B 357879576 357880256 680 False 1138.000000 1138 96.916000 1 678 1 chr2B.!!$F1 677
15 TraesCS4B01G118300 chr2B 714085295 714085969 674 False 1127.000000 1127 96.889000 1 672 1 chr2B.!!$F3 671
16 TraesCS4B01G118300 chr2B 571151435 571151940 505 True 763.000000 763 94.083000 8034 8533 1 chr2B.!!$R2 499
17 TraesCS4B01G118300 chr6B 133215081 133215752 671 False 1144.000000 1144 97.470000 1 669 1 chr6B.!!$F1 668
18 TraesCS4B01G118300 chr6B 116292084 116292756 672 True 1112.000000 1112 96.582000 1 670 1 chr6B.!!$R1 669
19 TraesCS4B01G118300 chr6B 328354873 328355382 509 False 595.000000 595 88.063000 8034 8533 1 chr6B.!!$F2 499
20 TraesCS4B01G118300 chr3B 454892175 454892849 674 False 1125.000000 1125 96.889000 1 669 1 chr3B.!!$F2 668
21 TraesCS4B01G118300 chr3B 689292625 689293312 687 True 1112.000000 1112 95.942000 1 684 1 chr3B.!!$R1 683
22 TraesCS4B01G118300 chr3B 401804489 401810150 5661 True 679.200000 1014 82.681200 860 6981 5 chr3B.!!$R2 6121
23 TraesCS4B01G118300 chr3B 406649922 406652234 2312 False 546.000000 617 80.978000 1321 5434 2 chr3B.!!$F3 4113
24 TraesCS4B01G118300 chr3D 317198529 317205403 6874 False 934.000000 1074 82.365250 737 7564 4 chr3D.!!$F1 6827
25 TraesCS4B01G118300 chr7B 665542009 665542868 859 True 880.000000 880 85.219000 4637 5496 1 chr7B.!!$R1 859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 106 0.250081 CGAGAGCAGGAATAAGCCCC 60.250 60.000 0.00 0.00 0.00 5.80 F
740 757 1.076350 TCCCCCATTTGGACATTTCGT 59.924 47.619 0.00 0.00 37.39 3.85 F
1558 1752 0.953727 ATGCTTCTTTCTGCAACGCA 59.046 45.000 0.00 0.00 42.74 5.24 F
2038 2298 1.071239 CAAATCGCTCGTAGGCATTCG 60.071 52.381 0.00 0.00 0.00 3.34 F
2337 2615 1.212441 TGGATGACCTGTGCATATGCA 59.788 47.619 26.32 26.32 42.21 3.96 F
2543 2826 1.616865 TCGTGGCCCACTATATACAGC 59.383 52.381 12.94 0.00 31.34 4.40 F
3195 3764 2.447408 TAGAACTATGCACCCGAGGA 57.553 50.000 0.00 0.00 0.00 3.71 F
3795 5289 2.699954 GGGCTCTGATTTTTCACGAGA 58.300 47.619 0.00 0.00 0.00 4.04 F
3868 5368 3.251972 GCTGATTTAAGCATACAGGCTCC 59.748 47.826 0.00 0.00 45.07 4.70 F
4284 8381 3.740044 CGTGAAATGTAGACGCCATTT 57.260 42.857 5.41 5.41 43.33 2.32 F
6188 10660 4.002906 AGAACGCCTTTGACTATTGACA 57.997 40.909 0.00 0.00 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1041 1093 0.705253 AGAGACGGAAAGAGGAGGGA 59.295 55.000 0.00 0.00 0.00 4.20 R
2021 2281 1.661821 GCGAATGCCTACGAGCGAT 60.662 57.895 0.00 0.00 34.65 4.58 R
3452 4054 2.032550 CAGCATTTACTTCTGATGGCCG 59.967 50.000 0.00 0.00 0.00 6.13 R
3759 5253 0.955428 GCCCGCACACTTGAATCAGA 60.955 55.000 0.00 0.00 0.00 3.27 R
3868 5368 1.590238 CGCGTGCTCCTCTCAAAATAG 59.410 52.381 0.00 0.00 0.00 1.73 R
4232 8327 6.314152 GTCATGCCCTCTCTAGAAGTAAAAAC 59.686 42.308 0.00 0.00 0.00 2.43 R
4760 8971 2.494870 GCCATTTTCAGCACAGGAAGAT 59.505 45.455 0.00 0.00 0.00 2.40 R
5199 9415 4.004982 TCACCCATTCTTTTAACGCCTAC 58.995 43.478 0.00 0.00 0.00 3.18 R
5804 10270 5.843019 AGGAAGTAACAGATGGAGGAAAA 57.157 39.130 0.00 0.00 0.00 2.29 R
6255 10727 2.697431 GCACAAAGCATACCGTCAAA 57.303 45.000 0.00 0.00 44.79 2.69 R
7701 12238 0.036010 ATCAGGAACAGGGCAGTTCG 60.036 55.000 13.54 4.15 46.81 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 106 0.250081 CGAGAGCAGGAATAAGCCCC 60.250 60.000 0.00 0.00 0.00 5.80
424 431 3.545124 AAATGCCCCTGTCGTCGCA 62.545 57.895 0.00 0.00 35.35 5.10
448 455 3.841255 GGAAGAAGAAAGAGGGGAGAGAA 59.159 47.826 0.00 0.00 0.00 2.87
705 712 4.321718 TGTACTACGTACTCACTTGCTCT 58.678 43.478 5.83 0.00 39.49 4.09
740 757 1.076350 TCCCCCATTTGGACATTTCGT 59.924 47.619 0.00 0.00 37.39 3.85
887 918 2.039137 GACCCTCCCTCGTCCCTT 59.961 66.667 0.00 0.00 0.00 3.95
905 939 2.126580 GTTCGTGGTCCGTCTCCG 60.127 66.667 0.00 0.00 37.94 4.63
1479 1673 1.733402 TTTTGCCCGCACAAGGTCAG 61.733 55.000 0.00 0.00 0.00 3.51
1558 1752 0.953727 ATGCTTCTTTCTGCAACGCA 59.046 45.000 0.00 0.00 42.74 5.24
1669 1878 1.133790 GTTGCAAGGGCTGATGATCAC 59.866 52.381 0.00 0.00 41.91 3.06
2021 2281 3.130869 AGAAATCCGCAATATGCAGCAAA 59.869 39.130 0.00 0.00 45.36 3.68
2023 2283 2.780065 TCCGCAATATGCAGCAAATC 57.220 45.000 0.00 0.00 45.36 2.17
2038 2298 1.071239 CAAATCGCTCGTAGGCATTCG 60.071 52.381 0.00 0.00 0.00 3.34
2193 2470 2.047179 GGAGAAGGTGCGTGTCCC 60.047 66.667 0.00 0.00 0.00 4.46
2241 2519 5.612351 AGTTAGTTTTTGTGTCCTCTCCTC 58.388 41.667 0.00 0.00 0.00 3.71
2268 2546 6.263392 TGTTTGTTTTCGAGGATGGTTGATTA 59.737 34.615 0.00 0.00 0.00 1.75
2337 2615 1.212441 TGGATGACCTGTGCATATGCA 59.788 47.619 26.32 26.32 42.21 3.96
2434 2716 8.908678 CGATTTAATTCATGCCACATTCATTAG 58.091 33.333 0.00 0.00 0.00 1.73
2543 2826 1.616865 TCGTGGCCCACTATATACAGC 59.383 52.381 12.94 0.00 31.34 4.40
2971 3527 7.835822 TCCCATATTTACTTTGACAACAATGG 58.164 34.615 0.00 0.00 36.09 3.16
2995 3551 8.209584 TGGCACCATTTTGCATTTTATATACAT 58.790 29.630 0.00 0.00 44.94 2.29
3028 3586 5.410067 GCTTACACACAATGCATTACCATT 58.590 37.500 12.53 0.00 35.90 3.16
3076 3642 3.774766 TGCTCTGTATGTGGTCCTTATGT 59.225 43.478 0.00 0.00 0.00 2.29
3083 3649 6.054941 TGTATGTGGTCCTTATGTATGCTTG 58.945 40.000 0.00 0.00 0.00 4.01
3153 3722 2.604614 GCTGTAAACTTTTGACCGCCAG 60.605 50.000 0.00 0.00 0.00 4.85
3193 3762 4.038763 TGGTTATAGAACTATGCACCCGAG 59.961 45.833 15.90 0.00 35.74 4.63
3195 3764 2.447408 TAGAACTATGCACCCGAGGA 57.553 50.000 0.00 0.00 0.00 3.71
3228 3797 6.367983 AGATCCATGGCATGTTACACTAAAT 58.632 36.000 24.80 5.30 0.00 1.40
3232 3801 6.210385 TCCATGGCATGTTACACTAAATTTGT 59.790 34.615 24.80 0.00 0.00 2.83
3452 4054 8.404000 AGAAGCAATCAAAGATGTTATCATGTC 58.596 33.333 0.00 0.00 34.06 3.06
3459 4061 3.668447 AGATGTTATCATGTCGGCCATC 58.332 45.455 2.24 0.00 34.06 3.51
3795 5289 2.699954 GGGCTCTGATTTTTCACGAGA 58.300 47.619 0.00 0.00 0.00 4.04
3858 5358 5.670485 TCGATTCCTAAGCTGATTTAAGCA 58.330 37.500 0.00 0.00 46.08 3.91
3868 5368 3.251972 GCTGATTTAAGCATACAGGCTCC 59.748 47.826 0.00 0.00 45.07 4.70
4216 8311 6.801539 TTAACAGTAGGACAATTTCAGCAG 57.198 37.500 0.00 0.00 0.00 4.24
4284 8381 3.740044 CGTGAAATGTAGACGCCATTT 57.260 42.857 5.41 5.41 43.33 2.32
4289 8386 4.393680 TGAAATGTAGACGCCATTTGGTAC 59.606 41.667 9.26 0.00 41.34 3.34
5481 9939 7.147312 TGAATTTCCTGTTCTGCAAACATTAG 58.853 34.615 12.68 7.24 0.00 1.73
5521 9981 7.847096 TCATAAGTAAATTGTGGTGAGAGCTA 58.153 34.615 0.00 0.00 31.32 3.32
5760 10225 4.454678 TCTGAATCTTGCTGTGTTTGAGT 58.545 39.130 0.00 0.00 0.00 3.41
5804 10270 9.668497 GTTACATTACTAATCAGGTCCTTTCTT 57.332 33.333 0.00 0.00 0.00 2.52
5975 10446 4.255833 TCTTGTTTTTCATGGCATGGTC 57.744 40.909 26.15 12.78 0.00 4.02
6131 10603 9.740710 AAAAATTAGCCATATGTATCTACTCCC 57.259 33.333 1.24 0.00 0.00 4.30
6132 10604 8.686739 AAATTAGCCATATGTATCTACTCCCT 57.313 34.615 1.24 0.00 0.00 4.20
6133 10605 7.906199 ATTAGCCATATGTATCTACTCCCTC 57.094 40.000 1.24 0.00 0.00 4.30
6134 10606 4.615513 AGCCATATGTATCTACTCCCTCC 58.384 47.826 1.24 0.00 0.00 4.30
6135 10607 4.296313 AGCCATATGTATCTACTCCCTCCT 59.704 45.833 1.24 0.00 0.00 3.69
6136 10608 5.026790 GCCATATGTATCTACTCCCTCCTT 58.973 45.833 1.24 0.00 0.00 3.36
6137 10609 5.128008 GCCATATGTATCTACTCCCTCCTTC 59.872 48.000 1.24 0.00 0.00 3.46
6138 10610 5.659079 CCATATGTATCTACTCCCTCCTTCC 59.341 48.000 1.24 0.00 0.00 3.46
6139 10611 4.834406 ATGTATCTACTCCCTCCTTCCA 57.166 45.455 0.00 0.00 0.00 3.53
6140 10612 4.834406 TGTATCTACTCCCTCCTTCCAT 57.166 45.455 0.00 0.00 0.00 3.41
6141 10613 4.742012 TGTATCTACTCCCTCCTTCCATC 58.258 47.826 0.00 0.00 0.00 3.51
6142 10614 4.420552 TGTATCTACTCCCTCCTTCCATCT 59.579 45.833 0.00 0.00 0.00 2.90
6143 10615 5.615692 TGTATCTACTCCCTCCTTCCATCTA 59.384 44.000 0.00 0.00 0.00 1.98
6144 10616 5.894715 ATCTACTCCCTCCTTCCATCTAT 57.105 43.478 0.00 0.00 0.00 1.98
6145 10617 6.996876 ATCTACTCCCTCCTTCCATCTATA 57.003 41.667 0.00 0.00 0.00 1.31
6146 10618 6.996876 TCTACTCCCTCCTTCCATCTATAT 57.003 41.667 0.00 0.00 0.00 0.86
6147 10619 8.660681 ATCTACTCCCTCCTTCCATCTATATA 57.339 38.462 0.00 0.00 0.00 0.86
6148 10620 8.478214 TCTACTCCCTCCTTCCATCTATATAA 57.522 38.462 0.00 0.00 0.00 0.98
6149 10621 8.561769 TCTACTCCCTCCTTCCATCTATATAAG 58.438 40.741 0.00 0.00 0.00 1.73
6150 10622 6.507568 ACTCCCTCCTTCCATCTATATAAGG 58.492 44.000 0.00 0.00 39.93 2.69
6151 10623 5.281314 TCCCTCCTTCCATCTATATAAGGC 58.719 45.833 0.00 0.00 38.70 4.35
6152 10624 4.410555 CCCTCCTTCCATCTATATAAGGCC 59.589 50.000 0.00 0.00 38.70 5.19
6153 10625 5.284582 CCTCCTTCCATCTATATAAGGCCT 58.715 45.833 0.00 0.00 38.70 5.19
6154 10626 6.444704 CCTCCTTCCATCTATATAAGGCCTA 58.555 44.000 5.16 0.00 38.70 3.93
6155 10627 6.903534 CCTCCTTCCATCTATATAAGGCCTAA 59.096 42.308 5.16 0.00 38.70 2.69
6156 10628 7.570607 CCTCCTTCCATCTATATAAGGCCTAAT 59.429 40.741 5.16 2.64 38.70 1.73
6157 10629 8.324191 TCCTTCCATCTATATAAGGCCTAATG 57.676 38.462 5.16 1.68 38.70 1.90
6158 10630 7.906736 TCCTTCCATCTATATAAGGCCTAATGT 59.093 37.037 5.16 0.00 38.70 2.71
6159 10631 7.989741 CCTTCCATCTATATAAGGCCTAATGTG 59.010 40.741 5.16 2.23 32.66 3.21
6160 10632 8.449423 TTCCATCTATATAAGGCCTAATGTGT 57.551 34.615 5.16 0.00 0.00 3.72
6161 10633 8.449423 TCCATCTATATAAGGCCTAATGTGTT 57.551 34.615 5.16 0.00 0.00 3.32
6162 10634 8.890472 TCCATCTATATAAGGCCTAATGTGTTT 58.110 33.333 5.16 0.00 0.00 2.83
6163 10635 9.520515 CCATCTATATAAGGCCTAATGTGTTTT 57.479 33.333 5.16 0.00 0.00 2.43
6169 10641 9.914834 ATATAAGGCCTAATGTGTTTTACAAGA 57.085 29.630 5.16 0.00 43.77 3.02
6170 10642 6.969993 AAGGCCTAATGTGTTTTACAAGAA 57.030 33.333 5.16 0.00 43.77 2.52
6171 10643 6.327279 AGGCCTAATGTGTTTTACAAGAAC 57.673 37.500 1.29 0.00 43.77 3.01
6172 10644 5.048991 AGGCCTAATGTGTTTTACAAGAACG 60.049 40.000 1.29 0.00 43.77 3.95
6173 10645 4.615541 GCCTAATGTGTTTTACAAGAACGC 59.384 41.667 0.00 0.00 43.77 4.84
6174 10646 5.151389 CCTAATGTGTTTTACAAGAACGCC 58.849 41.667 0.00 0.00 43.77 5.68
6175 10647 4.911514 AATGTGTTTTACAAGAACGCCT 57.088 36.364 0.00 0.00 43.77 5.52
6176 10648 4.911514 ATGTGTTTTACAAGAACGCCTT 57.088 36.364 0.00 0.00 43.77 4.35
6177 10649 4.705337 TGTGTTTTACAAGAACGCCTTT 57.295 36.364 0.00 0.00 36.85 3.11
6178 10650 4.416620 TGTGTTTTACAAGAACGCCTTTG 58.583 39.130 0.00 0.00 36.85 2.77
6179 10651 4.156190 TGTGTTTTACAAGAACGCCTTTGA 59.844 37.500 1.07 0.00 36.85 2.69
6180 10652 4.497966 GTGTTTTACAAGAACGCCTTTGAC 59.502 41.667 1.07 0.00 32.76 3.18
6181 10653 4.396790 TGTTTTACAAGAACGCCTTTGACT 59.603 37.500 1.07 0.00 31.42 3.41
6182 10654 5.585445 TGTTTTACAAGAACGCCTTTGACTA 59.415 36.000 1.07 0.00 31.42 2.59
6183 10655 6.261381 TGTTTTACAAGAACGCCTTTGACTAT 59.739 34.615 1.07 0.00 31.42 2.12
6184 10656 6.870971 TTTACAAGAACGCCTTTGACTATT 57.129 33.333 1.07 0.00 31.42 1.73
6185 10657 4.749245 ACAAGAACGCCTTTGACTATTG 57.251 40.909 1.07 0.00 31.42 1.90
6186 10658 4.385825 ACAAGAACGCCTTTGACTATTGA 58.614 39.130 1.07 0.00 31.42 2.57
6187 10659 4.213482 ACAAGAACGCCTTTGACTATTGAC 59.787 41.667 1.07 0.00 31.42 3.18
6188 10660 4.002906 AGAACGCCTTTGACTATTGACA 57.997 40.909 0.00 0.00 0.00 3.58
6189 10661 4.385825 AGAACGCCTTTGACTATTGACAA 58.614 39.130 0.00 0.00 0.00 3.18
6190 10662 4.452455 AGAACGCCTTTGACTATTGACAAG 59.548 41.667 0.00 0.00 0.00 3.16
6191 10663 4.002906 ACGCCTTTGACTATTGACAAGA 57.997 40.909 0.00 0.00 0.00 3.02
6192 10664 4.579869 ACGCCTTTGACTATTGACAAGAT 58.420 39.130 0.00 0.00 0.00 2.40
6193 10665 5.003804 ACGCCTTTGACTATTGACAAGATT 58.996 37.500 0.00 0.00 0.00 2.40
6194 10666 6.170506 ACGCCTTTGACTATTGACAAGATTA 58.829 36.000 0.00 0.00 0.00 1.75
6195 10667 6.653320 ACGCCTTTGACTATTGACAAGATTAA 59.347 34.615 0.00 0.00 0.00 1.40
6196 10668 7.336931 ACGCCTTTGACTATTGACAAGATTAAT 59.663 33.333 0.00 0.00 0.00 1.40
6197 10669 8.826710 CGCCTTTGACTATTGACAAGATTAATA 58.173 33.333 0.00 0.00 0.00 0.98
6210 10682 9.045223 TGACAAGATTAATAGTACATGACATGC 57.955 33.333 15.49 0.11 0.00 4.06
6211 10683 8.962884 ACAAGATTAATAGTACATGACATGCA 57.037 30.769 15.49 0.00 0.00 3.96
6212 10684 9.565090 ACAAGATTAATAGTACATGACATGCAT 57.435 29.630 15.49 0.00 37.85 3.96
6255 10727 5.803020 GAAAGCTCCTTTCACATACGAAT 57.197 39.130 11.65 0.00 46.23 3.34
6256 10728 6.183309 GAAAGCTCCTTTCACATACGAATT 57.817 37.500 11.65 0.00 46.23 2.17
6257 10729 6.575162 AAAGCTCCTTTCACATACGAATTT 57.425 33.333 0.00 0.00 0.00 1.82
6258 10730 5.551760 AGCTCCTTTCACATACGAATTTG 57.448 39.130 0.00 0.00 0.00 2.32
6259 10731 5.245531 AGCTCCTTTCACATACGAATTTGA 58.754 37.500 0.00 0.00 0.00 2.69
6260 10732 5.122396 AGCTCCTTTCACATACGAATTTGAC 59.878 40.000 0.00 0.00 0.00 3.18
6261 10733 5.524511 TCCTTTCACATACGAATTTGACG 57.475 39.130 0.00 0.00 0.00 4.35
6262 10734 4.390603 TCCTTTCACATACGAATTTGACGG 59.609 41.667 0.00 0.00 34.93 4.79
6263 10735 4.153475 CCTTTCACATACGAATTTGACGGT 59.847 41.667 0.00 0.00 34.93 4.83
6264 10736 5.349270 CCTTTCACATACGAATTTGACGGTA 59.651 40.000 0.00 0.00 34.93 4.02
6265 10737 6.036735 CCTTTCACATACGAATTTGACGGTAT 59.963 38.462 0.00 0.00 34.93 2.73
6266 10738 5.959652 TCACATACGAATTTGACGGTATG 57.040 39.130 0.00 8.12 34.47 2.39
6267 10739 4.269123 TCACATACGAATTTGACGGTATGC 59.731 41.667 0.00 0.00 33.15 3.14
6268 10740 4.270084 CACATACGAATTTGACGGTATGCT 59.730 41.667 0.00 0.00 33.15 3.79
6269 10741 4.873827 ACATACGAATTTGACGGTATGCTT 59.126 37.500 0.00 0.00 33.15 3.91
6270 10742 5.353123 ACATACGAATTTGACGGTATGCTTT 59.647 36.000 0.00 0.00 33.15 3.51
6271 10743 4.078363 ACGAATTTGACGGTATGCTTTG 57.922 40.909 0.00 0.00 34.93 2.77
6272 10744 3.500680 ACGAATTTGACGGTATGCTTTGT 59.499 39.130 0.00 0.00 34.93 2.83
6273 10745 3.845775 CGAATTTGACGGTATGCTTTGTG 59.154 43.478 0.00 0.00 0.00 3.33
6274 10746 2.697431 TTTGACGGTATGCTTTGTGC 57.303 45.000 0.00 0.00 43.25 4.57
6298 10770 7.946043 GCAAGTTGCATGTCATATATTATTGC 58.054 34.615 22.90 0.00 44.26 3.56
6299 10771 7.811236 GCAAGTTGCATGTCATATATTATTGCT 59.189 33.333 22.90 0.00 44.26 3.91
6300 10772 9.338291 CAAGTTGCATGTCATATATTATTGCTC 57.662 33.333 0.00 0.00 0.00 4.26
6301 10773 8.859236 AGTTGCATGTCATATATTATTGCTCT 57.141 30.769 0.00 0.00 0.00 4.09
6302 10774 9.948964 AGTTGCATGTCATATATTATTGCTCTA 57.051 29.630 0.00 0.00 0.00 2.43
6305 10777 9.723601 TGCATGTCATATATTATTGCTCTAACA 57.276 29.630 0.00 0.00 0.00 2.41
6318 10790 9.995003 TTATTGCTCTAACATTTGGTCAAAATT 57.005 25.926 0.00 1.87 36.28 1.82
6320 10792 9.643693 ATTGCTCTAACATTTGGTCAAAATTAG 57.356 29.630 16.52 16.52 36.28 1.73
6321 10793 7.090173 TGCTCTAACATTTGGTCAAAATTAGC 58.910 34.615 17.20 13.28 36.28 3.09
6322 10794 6.531594 GCTCTAACATTTGGTCAAAATTAGCC 59.468 38.462 17.20 11.37 36.28 3.93
6323 10795 7.577616 GCTCTAACATTTGGTCAAAATTAGCCT 60.578 37.037 17.20 0.00 36.28 4.58
6324 10796 7.826690 TCTAACATTTGGTCAAAATTAGCCTC 58.173 34.615 17.20 0.00 36.28 4.70
6325 10797 5.059404 ACATTTGGTCAAAATTAGCCTCG 57.941 39.130 0.00 0.00 36.28 4.63
6326 10798 4.764823 ACATTTGGTCAAAATTAGCCTCGA 59.235 37.500 0.00 0.00 36.28 4.04
6327 10799 5.242838 ACATTTGGTCAAAATTAGCCTCGAA 59.757 36.000 0.00 0.00 36.28 3.71
6328 10800 5.776173 TTTGGTCAAAATTAGCCTCGAAA 57.224 34.783 0.00 0.00 0.00 3.46
6329 10801 5.776173 TTGGTCAAAATTAGCCTCGAAAA 57.224 34.783 0.00 0.00 0.00 2.29
6330 10802 5.776173 TGGTCAAAATTAGCCTCGAAAAA 57.224 34.783 0.00 0.00 0.00 1.94
6331 10803 5.525199 TGGTCAAAATTAGCCTCGAAAAAC 58.475 37.500 0.00 0.00 0.00 2.43
6332 10804 4.615541 GGTCAAAATTAGCCTCGAAAAACG 59.384 41.667 0.00 0.00 44.09 3.60
6333 10805 4.088071 GTCAAAATTAGCCTCGAAAAACGC 59.912 41.667 0.00 0.00 42.26 4.84
6334 10806 3.907894 AAATTAGCCTCGAAAAACGCA 57.092 38.095 0.00 0.00 42.26 5.24
6335 10807 4.434713 AAATTAGCCTCGAAAAACGCAT 57.565 36.364 0.00 0.00 42.26 4.73
6336 10808 4.434713 AATTAGCCTCGAAAAACGCATT 57.565 36.364 0.00 0.00 42.26 3.56
6337 10809 5.554822 AATTAGCCTCGAAAAACGCATTA 57.445 34.783 0.00 0.00 42.26 1.90
6338 10810 4.593597 TTAGCCTCGAAAAACGCATTAG 57.406 40.909 0.00 0.00 42.26 1.73
6339 10811 1.737793 AGCCTCGAAAAACGCATTAGG 59.262 47.619 0.00 0.00 42.26 2.69
6340 10812 1.794076 GCCTCGAAAAACGCATTAGGC 60.794 52.381 0.00 0.00 45.73 3.93
6341 10813 1.202143 CCTCGAAAAACGCATTAGGCC 60.202 52.381 0.00 0.00 42.26 5.19
6342 10814 0.806241 TCGAAAAACGCATTAGGCCC 59.194 50.000 0.00 0.00 42.26 5.80
6343 10815 0.808755 CGAAAAACGCATTAGGCCCT 59.191 50.000 0.00 0.00 40.31 5.19
6344 10816 2.011222 CGAAAAACGCATTAGGCCCTA 58.989 47.619 0.00 0.00 40.31 3.53
6345 10817 2.616842 CGAAAAACGCATTAGGCCCTAT 59.383 45.455 0.00 0.00 40.31 2.57
6346 10818 3.810941 CGAAAAACGCATTAGGCCCTATA 59.189 43.478 0.00 0.00 40.31 1.31
6347 10819 4.454504 CGAAAAACGCATTAGGCCCTATAT 59.545 41.667 0.00 0.00 40.31 0.86
6348 10820 5.640357 CGAAAAACGCATTAGGCCCTATATA 59.360 40.000 0.00 0.00 40.31 0.86
6349 10821 6.183360 CGAAAAACGCATTAGGCCCTATATAG 60.183 42.308 0.00 2.46 40.31 1.31
6350 10822 6.368779 AAAACGCATTAGGCCCTATATAGA 57.631 37.500 11.53 0.00 40.31 1.98
6351 10823 6.561519 AAACGCATTAGGCCCTATATAGAT 57.438 37.500 11.53 0.00 40.31 1.98
6352 10824 5.537300 ACGCATTAGGCCCTATATAGATG 57.463 43.478 11.53 6.87 40.31 2.90
6353 10825 4.345257 ACGCATTAGGCCCTATATAGATGG 59.655 45.833 11.53 6.04 40.31 3.51
6354 10826 4.588951 CGCATTAGGCCCTATATAGATGGA 59.411 45.833 11.53 0.00 40.31 3.41
6355 10827 5.070446 CGCATTAGGCCCTATATAGATGGAA 59.930 44.000 11.53 0.00 40.31 3.53
6356 10828 6.529220 GCATTAGGCCCTATATAGATGGAAG 58.471 44.000 11.53 0.00 36.11 3.46
6357 10829 6.465035 GCATTAGGCCCTATATAGATGGAAGG 60.465 46.154 11.53 3.94 36.11 3.46
6358 10830 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
6359 10831 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
6360 10832 3.970640 GGCCCTATATAGATGGAAGGAGG 59.029 52.174 11.53 1.87 0.00 4.30
6361 10833 3.970640 GCCCTATATAGATGGAAGGAGGG 59.029 52.174 11.53 3.52 44.52 4.30
6362 10834 4.327010 GCCCTATATAGATGGAAGGAGGGA 60.327 50.000 11.53 0.00 44.48 4.20
6363 10835 5.463154 CCCTATATAGATGGAAGGAGGGAG 58.537 50.000 11.53 0.00 44.48 4.30
6364 10836 5.042979 CCCTATATAGATGGAAGGAGGGAGT 60.043 48.000 11.53 0.00 44.48 3.85
6365 10837 6.162420 CCCTATATAGATGGAAGGAGGGAGTA 59.838 46.154 11.53 0.00 44.48 2.59
6383 10855 5.065218 GGGAGTATGCTTGTAGTGAATGTTG 59.935 44.000 0.00 0.00 0.00 3.33
6528 11002 5.494724 TGTTAGCTGCTCTTGATTGAGATT 58.505 37.500 4.91 0.00 36.23 2.40
6805 11297 7.259088 AGGGACGCTTTATGATATTCCTTAT 57.741 36.000 0.00 0.00 0.00 1.73
6806 11298 8.375493 AGGGACGCTTTATGATATTCCTTATA 57.625 34.615 0.00 0.00 0.00 0.98
7297 11819 5.106869 TGTTTATCTAATGGTGTGTGCGTTC 60.107 40.000 0.00 0.00 0.00 3.95
7343 11865 2.278854 GATGAGAAGCTGCAGGAACTC 58.721 52.381 17.12 0.00 34.60 3.01
7360 11882 2.787994 ACTCAAAGAAGAGCATGGTGG 58.212 47.619 0.00 0.00 39.26 4.61
7449 11976 4.329545 TGCCGGAGCTGTGGAACC 62.330 66.667 5.05 0.00 40.80 3.62
7607 12142 8.771920 ATTAACGTTATCTTGTGATGAACTCA 57.228 30.769 9.18 0.00 34.32 3.41
7673 12210 1.545651 GGCCCTGGTTGGTATAGCATC 60.546 57.143 5.28 4.95 0.00 3.91
7680 12217 3.067106 GGTTGGTATAGCATCGACATGG 58.933 50.000 5.28 0.00 0.00 3.66
7700 12237 7.293073 ACATGGATGCTAGTAATTGGAGATTT 58.707 34.615 0.00 0.00 0.00 2.17
7701 12238 7.446625 ACATGGATGCTAGTAATTGGAGATTTC 59.553 37.037 0.00 0.00 0.00 2.17
7715 12252 2.416893 GAGATTTCGAACTGCCCTGTTC 59.583 50.000 0.00 7.68 41.91 3.18
7716 12253 1.468914 GATTTCGAACTGCCCTGTTCC 59.531 52.381 0.00 0.00 42.22 3.62
7717 12254 0.472471 TTTCGAACTGCCCTGTTCCT 59.528 50.000 0.00 0.00 42.22 3.36
7754 12293 4.455877 GCACCAAGCTATGAAGTAACTGTT 59.544 41.667 0.00 0.00 41.15 3.16
7755 12294 5.617751 GCACCAAGCTATGAAGTAACTGTTG 60.618 44.000 2.69 0.00 41.15 3.33
7757 12296 4.697352 CCAAGCTATGAAGTAACTGTTGCT 59.303 41.667 5.25 5.25 0.00 3.91
7758 12297 5.391310 CCAAGCTATGAAGTAACTGTTGCTG 60.391 44.000 11.90 0.72 0.00 4.41
7759 12298 5.152623 AGCTATGAAGTAACTGTTGCTGA 57.847 39.130 11.90 2.85 0.00 4.26
7760 12299 5.551233 AGCTATGAAGTAACTGTTGCTGAA 58.449 37.500 11.90 4.21 0.00 3.02
7761 12300 5.997746 AGCTATGAAGTAACTGTTGCTGAAA 59.002 36.000 11.90 1.84 0.00 2.69
7781 12320 7.144722 TGAAATGATTTCAGCGACAGTTAAT 57.855 32.000 16.04 0.00 44.21 1.40
7788 12327 3.857052 TCAGCGACAGTTAATTCCGAAT 58.143 40.909 0.00 0.00 0.00 3.34
7789 12328 3.616821 TCAGCGACAGTTAATTCCGAATG 59.383 43.478 0.00 0.00 0.00 2.67
7791 12330 2.933906 GCGACAGTTAATTCCGAATGGA 59.066 45.455 0.00 0.00 44.61 3.41
7806 12345 7.834881 TCCGAATGGAGTTAGTAGTATGAAT 57.165 36.000 0.00 0.00 40.17 2.57
7807 12346 7.658261 TCCGAATGGAGTTAGTAGTATGAATG 58.342 38.462 0.00 0.00 40.17 2.67
7808 12347 6.868864 CCGAATGGAGTTAGTAGTATGAATGG 59.131 42.308 0.00 0.00 37.49 3.16
7809 12348 6.868864 CGAATGGAGTTAGTAGTATGAATGGG 59.131 42.308 0.00 0.00 0.00 4.00
7810 12349 5.546621 TGGAGTTAGTAGTATGAATGGGC 57.453 43.478 0.00 0.00 0.00 5.36
7811 12350 5.216622 TGGAGTTAGTAGTATGAATGGGCT 58.783 41.667 0.00 0.00 0.00 5.19
7812 12351 5.665812 TGGAGTTAGTAGTATGAATGGGCTT 59.334 40.000 0.00 0.00 0.00 4.35
7813 12352 5.992217 GGAGTTAGTAGTATGAATGGGCTTG 59.008 44.000 0.00 0.00 0.00 4.01
7814 12353 6.408206 GGAGTTAGTAGTATGAATGGGCTTGT 60.408 42.308 0.00 0.00 0.00 3.16
7815 12354 6.958767 AGTTAGTAGTATGAATGGGCTTGTT 58.041 36.000 0.00 0.00 0.00 2.83
7816 12355 6.823689 AGTTAGTAGTATGAATGGGCTTGTTG 59.176 38.462 0.00 0.00 0.00 3.33
7817 12356 4.526970 AGTAGTATGAATGGGCTTGTTGG 58.473 43.478 0.00 0.00 0.00 3.77
7818 12357 3.737559 AGTATGAATGGGCTTGTTGGA 57.262 42.857 0.00 0.00 0.00 3.53
7819 12358 4.046286 AGTATGAATGGGCTTGTTGGAA 57.954 40.909 0.00 0.00 0.00 3.53
7820 12359 4.415596 AGTATGAATGGGCTTGTTGGAAA 58.584 39.130 0.00 0.00 0.00 3.13
7832 12371 3.248043 TTGGAAACATGAGCCCGAG 57.752 52.632 0.00 0.00 42.32 4.63
7833 12372 0.400213 TTGGAAACATGAGCCCGAGT 59.600 50.000 0.00 0.00 42.32 4.18
7834 12373 1.271856 TGGAAACATGAGCCCGAGTA 58.728 50.000 0.00 0.00 33.40 2.59
7835 12374 1.066430 TGGAAACATGAGCCCGAGTAC 60.066 52.381 0.00 0.00 33.40 2.73
7836 12375 1.207329 GGAAACATGAGCCCGAGTACT 59.793 52.381 0.00 0.00 0.00 2.73
7843 12382 4.278669 ACATGAGCCCGAGTACTAGTATTG 59.721 45.833 5.75 0.00 0.00 1.90
7876 12531 1.143305 CAGGAGAATAGATTGGCGCG 58.857 55.000 0.00 0.00 0.00 6.86
7882 12537 1.125021 GAATAGATTGGCGCGTGATCG 59.875 52.381 8.43 0.00 40.37 3.69
7948 12603 5.045286 AGAGCTAAAGTTTCCATCCATCAGT 60.045 40.000 0.00 0.00 0.00 3.41
7961 12616 6.016024 TCCATCCATCAGTTCTTTTTCAGTTG 60.016 38.462 0.00 0.00 0.00 3.16
7963 12618 4.037923 TCCATCAGTTCTTTTTCAGTTGCC 59.962 41.667 0.00 0.00 0.00 4.52
7988 12643 4.450053 AGAATTATCTCTTGCCACAGAGC 58.550 43.478 0.72 0.00 40.33 4.09
7989 12644 3.920231 ATTATCTCTTGCCACAGAGCA 57.080 42.857 0.72 0.00 40.33 4.26
8029 12967 1.331756 GAACAAGCCACACACTCACAG 59.668 52.381 0.00 0.00 0.00 3.66
8267 13213 3.554342 CATCCCCTCTCCCGGCTG 61.554 72.222 0.00 0.00 0.00 4.85
8293 13239 0.468214 CTACTCTGGATCGGCCTCCA 60.468 60.000 12.91 12.91 43.09 3.86
8304 13250 1.742768 GGCCTCCAATCGAGATCGT 59.257 57.895 0.00 0.00 41.63 3.73
8331 13277 4.641989 GTGACAATTGGTTATCAGAGCCAT 59.358 41.667 10.83 0.00 31.71 4.40
8347 13294 1.696063 CCATCGAATCCTGCCCAAAT 58.304 50.000 0.00 0.00 0.00 2.32
8402 13352 2.168521 CTCGATCTGTAACACCCACCAT 59.831 50.000 0.00 0.00 0.00 3.55
8444 13394 2.270850 CTCGCCCAAAATCCCCGA 59.729 61.111 0.00 0.00 0.00 5.14
8474 13424 0.970937 TCGGTTCGGAGAGGAGCAAT 60.971 55.000 0.00 0.00 38.43 3.56
8493 13443 2.436109 GCACCTTCCAAGCCCTCA 59.564 61.111 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
298 302 1.220749 GGCGGGCATGTCTTCTACA 59.779 57.895 0.00 0.00 43.86 2.74
424 431 3.843619 CTCTCCCCTCTTTCTTCTTCCTT 59.156 47.826 0.00 0.00 0.00 3.36
448 455 1.816572 GCCCAACTAACCGGTTCACTT 60.817 52.381 26.16 10.63 0.00 3.16
632 639 0.599558 TGTCCCTAACTCGAACCACG 59.400 55.000 0.00 0.00 44.09 4.94
685 692 3.126514 GCAGAGCAAGTGAGTACGTAGTA 59.873 47.826 2.11 0.00 45.11 1.82
687 694 2.520979 GCAGAGCAAGTGAGTACGTAG 58.479 52.381 0.00 0.00 0.00 3.51
688 695 1.201647 GGCAGAGCAAGTGAGTACGTA 59.798 52.381 0.00 0.00 0.00 3.57
689 696 0.038159 GGCAGAGCAAGTGAGTACGT 60.038 55.000 0.00 0.00 0.00 3.57
690 697 0.737715 GGGCAGAGCAAGTGAGTACG 60.738 60.000 0.00 0.00 0.00 3.67
691 698 0.391793 GGGGCAGAGCAAGTGAGTAC 60.392 60.000 0.00 0.00 0.00 2.73
740 757 0.683179 TGATCGAGGAGGCGAAAGGA 60.683 55.000 0.00 0.00 44.22 3.36
1041 1093 0.705253 AGAGACGGAAAGAGGAGGGA 59.295 55.000 0.00 0.00 0.00 4.20
1479 1673 4.180967 GCCTCTATGGTTCCACAAAGGAC 61.181 52.174 15.10 6.64 40.72 3.85
1558 1752 6.183360 CCTCAAAGTGGTTCTCAAACTTGAAT 60.183 38.462 0.00 0.00 36.64 2.57
1685 1894 2.202987 CTGCAGATGCTCCCCGAC 60.203 66.667 8.42 0.00 42.66 4.79
1897 2106 5.999205 AGATTGCAAACCAACCATCATTA 57.001 34.783 1.71 0.00 35.99 1.90
2021 2281 1.661821 GCGAATGCCTACGAGCGAT 60.662 57.895 0.00 0.00 34.65 4.58
2023 2283 2.580470 CTGCGAATGCCTACGAGCG 61.580 63.158 0.00 0.00 41.78 5.03
2038 2298 7.160049 TCTGATTCTCATTAAGGATCATCTGC 58.840 38.462 0.00 0.00 46.83 4.26
2193 2470 5.465390 TCCATAATTCTTTATCGGCGACAAG 59.535 40.000 13.76 17.62 0.00 3.16
2241 2519 4.568152 ACCATCCTCGAAAACAAACAAG 57.432 40.909 0.00 0.00 0.00 3.16
2268 2546 9.578439 GATGCTATTTAAAAGAAGCACAGAAAT 57.422 29.630 19.43 7.98 46.84 2.17
2337 2615 3.386726 TGCCATGTAGTAATTCTAGCCGT 59.613 43.478 0.00 0.00 0.00 5.68
2709 2996 9.565213 GAAGGCATGATATTTGCATTAGATAAC 57.435 33.333 10.30 0.00 43.38 1.89
2995 3551 5.627367 GCATTGTGTGTAAGCGAAAACATAA 59.373 36.000 0.00 0.00 0.00 1.90
3028 3586 4.776435 TGCCATCAGGTAAGAATGATCA 57.224 40.909 0.00 0.00 37.19 2.92
3076 3642 5.418840 GGAAAGGATCAAAAGTCCAAGCATA 59.581 40.000 0.00 0.00 38.25 3.14
3083 3649 6.095580 GGTAGATTGGAAAGGATCAAAAGTCC 59.904 42.308 0.00 0.00 35.94 3.85
3153 3722 3.831729 CATGCATGCACGTATGGAC 57.168 52.632 25.37 0.00 31.02 4.02
3193 3762 4.973168 TGCCATGGATCTAAGTACATTCC 58.027 43.478 18.40 0.00 0.00 3.01
3195 3764 5.945310 ACATGCCATGGATCTAAGTACATT 58.055 37.500 18.40 0.00 33.60 2.71
3228 3797 8.738645 AAATTGTGTAAAATAAGGCCAACAAA 57.261 26.923 5.01 0.00 0.00 2.83
3232 3801 9.868277 CTATGAAATTGTGTAAAATAAGGCCAA 57.132 29.630 5.01 0.00 0.00 4.52
3452 4054 2.032550 CAGCATTTACTTCTGATGGCCG 59.967 50.000 0.00 0.00 0.00 6.13
3459 4061 5.695851 AAGGTTCACAGCATTTACTTCTG 57.304 39.130 0.00 0.00 0.00 3.02
3550 4153 6.017934 GCAACAAAAACTGTCAGTAGATCTCA 60.018 38.462 5.77 0.00 37.23 3.27
3759 5253 0.955428 GCCCGCACACTTGAATCAGA 60.955 55.000 0.00 0.00 0.00 3.27
3795 5289 7.392673 CCTATGCATCTCAATTAAGGCATACTT 59.607 37.037 0.19 0.00 41.67 2.24
3858 5358 5.219739 TCCTCTCAAAATAGGAGCCTGTAT 58.780 41.667 0.00 0.00 36.97 2.29
3868 5368 1.590238 CGCGTGCTCCTCTCAAAATAG 59.410 52.381 0.00 0.00 0.00 1.73
4129 8221 7.097168 CGAGTGACGACAAAAATAAGAAAAACC 60.097 37.037 0.00 0.00 45.77 3.27
4130 8222 7.637132 TCGAGTGACGACAAAAATAAGAAAAAC 59.363 33.333 0.00 0.00 46.45 2.43
4216 8311 7.631915 AGTAAAAACCAAATTACGTGCATTC 57.368 32.000 0.00 0.00 37.16 2.67
4232 8327 6.314152 GTCATGCCCTCTCTAGAAGTAAAAAC 59.686 42.308 0.00 0.00 0.00 2.43
4760 8971 2.494870 GCCATTTTCAGCACAGGAAGAT 59.505 45.455 0.00 0.00 0.00 2.40
5199 9415 4.004982 TCACCCATTCTTTTAACGCCTAC 58.995 43.478 0.00 0.00 0.00 3.18
5481 9939 8.589335 TTTACTTATGAATAGATGAACCGAGC 57.411 34.615 0.00 0.00 0.00 5.03
5760 10225 8.472007 AATGTAACTAATGTTTTTGGGTCAGA 57.528 30.769 0.00 0.00 37.59 3.27
5804 10270 5.843019 AGGAAGTAACAGATGGAGGAAAA 57.157 39.130 0.00 0.00 0.00 2.29
5975 10446 4.184629 GGTAGCTTACATCCACAGTTGAG 58.815 47.826 0.00 0.00 0.00 3.02
6127 10599 5.365314 GCCTTATATAGATGGAAGGAGGGAG 59.635 48.000 3.56 0.00 40.88 4.30
6128 10600 5.281314 GCCTTATATAGATGGAAGGAGGGA 58.719 45.833 3.56 0.00 40.88 4.20
6129 10601 4.410555 GGCCTTATATAGATGGAAGGAGGG 59.589 50.000 0.00 0.00 40.88 4.30
6130 10602 5.284582 AGGCCTTATATAGATGGAAGGAGG 58.715 45.833 0.00 0.00 40.88 4.30
6131 10603 7.979786 TTAGGCCTTATATAGATGGAAGGAG 57.020 40.000 12.58 0.00 40.88 3.69
6132 10604 7.906736 ACATTAGGCCTTATATAGATGGAAGGA 59.093 37.037 12.58 0.00 40.88 3.36
6133 10605 7.989741 CACATTAGGCCTTATATAGATGGAAGG 59.010 40.741 12.58 0.00 41.26 3.46
6134 10606 8.543774 ACACATTAGGCCTTATATAGATGGAAG 58.456 37.037 12.58 0.00 0.00 3.46
6135 10607 8.449423 ACACATTAGGCCTTATATAGATGGAA 57.551 34.615 12.58 0.00 0.00 3.53
6136 10608 8.449423 AACACATTAGGCCTTATATAGATGGA 57.551 34.615 12.58 0.00 0.00 3.41
6137 10609 9.520515 AAAACACATTAGGCCTTATATAGATGG 57.479 33.333 12.58 0.00 0.00 3.51
6143 10615 9.914834 TCTTGTAAAACACATTAGGCCTTATAT 57.085 29.630 12.58 0.00 36.90 0.86
6144 10616 9.742144 TTCTTGTAAAACACATTAGGCCTTATA 57.258 29.630 12.58 0.00 36.90 0.98
6145 10617 8.520351 GTTCTTGTAAAACACATTAGGCCTTAT 58.480 33.333 12.58 3.72 36.90 1.73
6146 10618 7.308109 CGTTCTTGTAAAACACATTAGGCCTTA 60.308 37.037 12.58 0.11 36.90 2.69
6147 10619 6.514376 CGTTCTTGTAAAACACATTAGGCCTT 60.514 38.462 12.58 0.00 36.90 4.35
6148 10620 5.048991 CGTTCTTGTAAAACACATTAGGCCT 60.049 40.000 11.78 11.78 36.90 5.19
6149 10621 5.151389 CGTTCTTGTAAAACACATTAGGCC 58.849 41.667 0.00 0.00 36.90 5.19
6150 10622 4.615541 GCGTTCTTGTAAAACACATTAGGC 59.384 41.667 0.00 0.00 36.90 3.93
6151 10623 5.048991 AGGCGTTCTTGTAAAACACATTAGG 60.049 40.000 0.00 0.00 36.90 2.69
6152 10624 5.997385 AGGCGTTCTTGTAAAACACATTAG 58.003 37.500 0.00 0.00 36.90 1.73
6153 10625 6.380095 AAGGCGTTCTTGTAAAACACATTA 57.620 33.333 0.00 0.00 36.90 1.90
6154 10626 4.911514 AGGCGTTCTTGTAAAACACATT 57.088 36.364 0.00 0.00 36.90 2.71
6155 10627 4.911514 AAGGCGTTCTTGTAAAACACAT 57.088 36.364 0.00 0.00 36.90 3.21
6156 10628 4.156190 TCAAAGGCGTTCTTGTAAAACACA 59.844 37.500 0.00 0.00 35.55 3.72
6157 10629 4.497966 GTCAAAGGCGTTCTTGTAAAACAC 59.502 41.667 0.00 0.00 35.55 3.32
6158 10630 4.396790 AGTCAAAGGCGTTCTTGTAAAACA 59.603 37.500 0.00 0.00 35.55 2.83
6159 10631 4.916870 AGTCAAAGGCGTTCTTGTAAAAC 58.083 39.130 0.00 0.00 35.55 2.43
6160 10632 6.870971 ATAGTCAAAGGCGTTCTTGTAAAA 57.129 33.333 0.00 0.00 35.55 1.52
6161 10633 6.483974 TCAATAGTCAAAGGCGTTCTTGTAAA 59.516 34.615 0.00 0.00 35.55 2.01
6162 10634 5.992829 TCAATAGTCAAAGGCGTTCTTGTAA 59.007 36.000 0.00 0.00 35.55 2.41
6163 10635 5.407387 GTCAATAGTCAAAGGCGTTCTTGTA 59.593 40.000 0.00 0.00 35.55 2.41
6164 10636 4.213482 GTCAATAGTCAAAGGCGTTCTTGT 59.787 41.667 0.00 0.00 35.55 3.16
6165 10637 4.213270 TGTCAATAGTCAAAGGCGTTCTTG 59.787 41.667 0.00 0.00 35.55 3.02
6166 10638 4.385825 TGTCAATAGTCAAAGGCGTTCTT 58.614 39.130 0.00 0.00 37.28 2.52
6167 10639 4.002906 TGTCAATAGTCAAAGGCGTTCT 57.997 40.909 0.00 0.00 0.00 3.01
6168 10640 4.451096 TCTTGTCAATAGTCAAAGGCGTTC 59.549 41.667 0.00 0.00 0.00 3.95
6169 10641 4.385825 TCTTGTCAATAGTCAAAGGCGTT 58.614 39.130 0.00 0.00 0.00 4.84
6170 10642 4.002906 TCTTGTCAATAGTCAAAGGCGT 57.997 40.909 0.00 0.00 0.00 5.68
6171 10643 5.551760 AATCTTGTCAATAGTCAAAGGCG 57.448 39.130 0.00 0.00 0.00 5.52
6184 10656 9.045223 GCATGTCATGTACTATTAATCTTGTCA 57.955 33.333 14.26 0.00 0.00 3.58
6185 10657 9.045223 TGCATGTCATGTACTATTAATCTTGTC 57.955 33.333 14.26 0.00 0.00 3.18
6186 10658 8.962884 TGCATGTCATGTACTATTAATCTTGT 57.037 30.769 14.26 0.00 0.00 3.16
6193 10665 9.995003 TCACATTATGCATGTCATGTACTATTA 57.005 29.630 10.16 0.00 43.17 0.98
6194 10666 8.907222 TCACATTATGCATGTCATGTACTATT 57.093 30.769 10.16 0.00 43.17 1.73
6195 10667 8.907222 TTCACATTATGCATGTCATGTACTAT 57.093 30.769 10.16 4.57 43.17 2.12
6196 10668 8.729805 TTTCACATTATGCATGTCATGTACTA 57.270 30.769 10.16 2.43 43.17 1.82
6197 10669 7.628769 TTTCACATTATGCATGTCATGTACT 57.371 32.000 10.16 3.51 43.17 2.73
6198 10670 8.861033 ATTTTCACATTATGCATGTCATGTAC 57.139 30.769 10.16 0.00 43.17 2.90
6233 10705 5.803020 ATTCGTATGTGAAAGGAGCTTTC 57.197 39.130 0.00 0.00 46.88 2.62
6234 10706 6.206634 TCAAATTCGTATGTGAAAGGAGCTTT 59.793 34.615 0.00 0.00 36.29 3.51
6235 10707 5.705441 TCAAATTCGTATGTGAAAGGAGCTT 59.295 36.000 0.00 0.00 0.00 3.74
6236 10708 5.122396 GTCAAATTCGTATGTGAAAGGAGCT 59.878 40.000 0.00 0.00 29.80 4.09
6237 10709 5.324697 GTCAAATTCGTATGTGAAAGGAGC 58.675 41.667 0.00 0.00 29.80 4.70
6238 10710 5.445939 CCGTCAAATTCGTATGTGAAAGGAG 60.446 44.000 10.57 0.00 33.27 3.69
6239 10711 4.390603 CCGTCAAATTCGTATGTGAAAGGA 59.609 41.667 10.57 0.00 33.27 3.36
6240 10712 4.153475 ACCGTCAAATTCGTATGTGAAAGG 59.847 41.667 13.13 13.13 35.64 3.11
6241 10713 5.277601 ACCGTCAAATTCGTATGTGAAAG 57.722 39.130 0.00 0.00 29.80 2.62
6242 10714 6.673556 GCATACCGTCAAATTCGTATGTGAAA 60.674 38.462 0.00 0.00 29.80 2.69
6243 10715 5.220510 GCATACCGTCAAATTCGTATGTGAA 60.221 40.000 0.00 0.00 29.80 3.18
6244 10716 4.269123 GCATACCGTCAAATTCGTATGTGA 59.731 41.667 0.00 0.00 31.72 3.58
6245 10717 4.270084 AGCATACCGTCAAATTCGTATGTG 59.730 41.667 0.00 0.00 31.72 3.21
6246 10718 4.439057 AGCATACCGTCAAATTCGTATGT 58.561 39.130 0.00 0.00 31.72 2.29
6247 10719 5.403897 AAGCATACCGTCAAATTCGTATG 57.596 39.130 0.00 0.00 0.00 2.39
6248 10720 5.353123 ACAAAGCATACCGTCAAATTCGTAT 59.647 36.000 0.00 0.00 0.00 3.06
6249 10721 4.691685 ACAAAGCATACCGTCAAATTCGTA 59.308 37.500 0.00 0.00 0.00 3.43
6250 10722 3.500680 ACAAAGCATACCGTCAAATTCGT 59.499 39.130 0.00 0.00 0.00 3.85
6251 10723 3.845775 CACAAAGCATACCGTCAAATTCG 59.154 43.478 0.00 0.00 0.00 3.34
6252 10724 3.608073 GCACAAAGCATACCGTCAAATTC 59.392 43.478 0.00 0.00 44.79 2.17
6253 10725 3.574614 GCACAAAGCATACCGTCAAATT 58.425 40.909 0.00 0.00 44.79 1.82
6254 10726 3.216147 GCACAAAGCATACCGTCAAAT 57.784 42.857 0.00 0.00 44.79 2.32
6255 10727 2.697431 GCACAAAGCATACCGTCAAA 57.303 45.000 0.00 0.00 44.79 2.69
6273 10745 7.811236 AGCAATAATATATGACATGCAACTTGC 59.189 33.333 6.82 6.82 45.29 4.01
6274 10746 9.338291 GAGCAATAATATATGACATGCAACTTG 57.662 33.333 10.78 0.00 34.89 3.16
6275 10747 9.293404 AGAGCAATAATATATGACATGCAACTT 57.707 29.630 10.78 0.00 34.89 2.66
6276 10748 8.859236 AGAGCAATAATATATGACATGCAACT 57.141 30.769 10.78 7.52 34.89 3.16
6279 10751 9.723601 TGTTAGAGCAATAATATATGACATGCA 57.276 29.630 10.78 0.00 34.89 3.96
6292 10764 9.995003 AATTTTGACCAAATGTTAGAGCAATAA 57.005 25.926 0.00 0.00 35.09 1.40
6294 10766 9.643693 CTAATTTTGACCAAATGTTAGAGCAAT 57.356 29.630 15.51 0.00 35.09 3.56
6295 10767 7.598493 GCTAATTTTGACCAAATGTTAGAGCAA 59.402 33.333 20.28 0.00 35.09 3.91
6296 10768 7.090173 GCTAATTTTGACCAAATGTTAGAGCA 58.910 34.615 20.28 0.00 35.09 4.26
6297 10769 6.531594 GGCTAATTTTGACCAAATGTTAGAGC 59.468 38.462 20.28 13.76 35.09 4.09
6298 10770 7.830739 AGGCTAATTTTGACCAAATGTTAGAG 58.169 34.615 20.28 8.22 35.09 2.43
6299 10771 7.361713 CGAGGCTAATTTTGACCAAATGTTAGA 60.362 37.037 20.28 0.86 35.09 2.10
6300 10772 6.747280 CGAGGCTAATTTTGACCAAATGTTAG 59.253 38.462 15.90 15.90 35.09 2.34
6301 10773 6.431543 TCGAGGCTAATTTTGACCAAATGTTA 59.568 34.615 0.00 0.07 35.09 2.41
6302 10774 5.242838 TCGAGGCTAATTTTGACCAAATGTT 59.757 36.000 0.00 0.00 35.09 2.71
6303 10775 4.764823 TCGAGGCTAATTTTGACCAAATGT 59.235 37.500 0.00 0.00 35.09 2.71
6304 10776 5.309323 TCGAGGCTAATTTTGACCAAATG 57.691 39.130 0.00 0.00 35.09 2.32
6305 10777 5.975693 TTCGAGGCTAATTTTGACCAAAT 57.024 34.783 0.00 0.00 36.57 2.32
6306 10778 5.776173 TTTCGAGGCTAATTTTGACCAAA 57.224 34.783 0.00 0.00 0.00 3.28
6307 10779 5.776173 TTTTCGAGGCTAATTTTGACCAA 57.224 34.783 0.00 0.00 0.00 3.67
6308 10780 5.525199 GTTTTTCGAGGCTAATTTTGACCA 58.475 37.500 0.00 0.00 0.00 4.02
6309 10781 4.615541 CGTTTTTCGAGGCTAATTTTGACC 59.384 41.667 0.00 0.00 42.86 4.02
6310 10782 4.088071 GCGTTTTTCGAGGCTAATTTTGAC 59.912 41.667 0.00 0.00 42.86 3.18
6311 10783 4.223659 GCGTTTTTCGAGGCTAATTTTGA 58.776 39.130 0.00 0.00 42.86 2.69
6312 10784 3.978217 TGCGTTTTTCGAGGCTAATTTTG 59.022 39.130 0.00 0.00 42.86 2.44
6313 10785 4.231718 TGCGTTTTTCGAGGCTAATTTT 57.768 36.364 0.00 0.00 42.86 1.82
6314 10786 3.907894 TGCGTTTTTCGAGGCTAATTT 57.092 38.095 0.00 0.00 42.86 1.82
6315 10787 4.434713 AATGCGTTTTTCGAGGCTAATT 57.565 36.364 0.00 0.00 42.86 1.40
6316 10788 4.035208 CCTAATGCGTTTTTCGAGGCTAAT 59.965 41.667 0.00 0.00 42.86 1.73
6317 10789 3.372822 CCTAATGCGTTTTTCGAGGCTAA 59.627 43.478 0.00 0.00 42.86 3.09
6318 10790 2.933906 CCTAATGCGTTTTTCGAGGCTA 59.066 45.455 0.00 0.00 42.86 3.93
6319 10791 1.737793 CCTAATGCGTTTTTCGAGGCT 59.262 47.619 0.00 0.00 42.86 4.58
6320 10792 1.794076 GCCTAATGCGTTTTTCGAGGC 60.794 52.381 12.47 12.47 44.30 4.70
6321 10793 1.202143 GGCCTAATGCGTTTTTCGAGG 60.202 52.381 0.00 0.00 42.61 4.63
6322 10794 1.202143 GGGCCTAATGCGTTTTTCGAG 60.202 52.381 0.84 0.00 42.61 4.04
6323 10795 0.806241 GGGCCTAATGCGTTTTTCGA 59.194 50.000 0.84 0.00 42.61 3.71
6324 10796 0.808755 AGGGCCTAATGCGTTTTTCG 59.191 50.000 2.82 0.00 42.61 3.46
6325 10797 5.959618 ATATAGGGCCTAATGCGTTTTTC 57.040 39.130 18.91 0.00 42.61 2.29
6326 10798 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
6327 10799 6.368779 TCTATATAGGGCCTAATGCGTTTT 57.631 37.500 18.91 0.30 42.61 2.43
6328 10800 6.349300 CATCTATATAGGGCCTAATGCGTTT 58.651 40.000 18.91 1.12 42.61 3.60
6329 10801 5.163301 CCATCTATATAGGGCCTAATGCGTT 60.163 44.000 18.91 1.94 42.61 4.84
6330 10802 4.345257 CCATCTATATAGGGCCTAATGCGT 59.655 45.833 18.91 2.76 42.61 5.24
6331 10803 4.588951 TCCATCTATATAGGGCCTAATGCG 59.411 45.833 18.91 10.04 42.61 4.73
6332 10804 6.465035 CCTTCCATCTATATAGGGCCTAATGC 60.465 46.154 18.91 0.00 40.16 3.56
6333 10805 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
6334 10806 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
6335 10807 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
6336 10808 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
6337 10809 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
6338 10810 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
6339 10811 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
6340 10812 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
6341 10813 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
6342 10814 7.232534 GCATACTCCCTCCTTCCATCTATATAG 59.767 44.444 3.10 3.10 0.00 1.31
6343 10815 7.069986 GCATACTCCCTCCTTCCATCTATATA 58.930 42.308 0.00 0.00 0.00 0.86
6344 10816 5.902431 GCATACTCCCTCCTTCCATCTATAT 59.098 44.000 0.00 0.00 0.00 0.86
6345 10817 5.016782 AGCATACTCCCTCCTTCCATCTATA 59.983 44.000 0.00 0.00 0.00 1.31
6346 10818 4.100373 GCATACTCCCTCCTTCCATCTAT 58.900 47.826 0.00 0.00 0.00 1.98
6347 10819 3.142977 AGCATACTCCCTCCTTCCATCTA 59.857 47.826 0.00 0.00 0.00 1.98
6348 10820 2.090267 AGCATACTCCCTCCTTCCATCT 60.090 50.000 0.00 0.00 0.00 2.90
6349 10821 2.334023 AGCATACTCCCTCCTTCCATC 58.666 52.381 0.00 0.00 0.00 3.51
6350 10822 2.441001 CAAGCATACTCCCTCCTTCCAT 59.559 50.000 0.00 0.00 0.00 3.41
6351 10823 1.839994 CAAGCATACTCCCTCCTTCCA 59.160 52.381 0.00 0.00 0.00 3.53
6352 10824 1.840635 ACAAGCATACTCCCTCCTTCC 59.159 52.381 0.00 0.00 0.00 3.46
6353 10825 3.707102 ACTACAAGCATACTCCCTCCTTC 59.293 47.826 0.00 0.00 0.00 3.46
6354 10826 3.452627 CACTACAAGCATACTCCCTCCTT 59.547 47.826 0.00 0.00 0.00 3.36
6355 10827 3.034635 CACTACAAGCATACTCCCTCCT 58.965 50.000 0.00 0.00 0.00 3.69
6356 10828 3.031736 TCACTACAAGCATACTCCCTCC 58.968 50.000 0.00 0.00 0.00 4.30
6357 10829 4.737855 TTCACTACAAGCATACTCCCTC 57.262 45.455 0.00 0.00 0.00 4.30
6358 10830 4.471386 ACATTCACTACAAGCATACTCCCT 59.529 41.667 0.00 0.00 0.00 4.20
6359 10831 4.770795 ACATTCACTACAAGCATACTCCC 58.229 43.478 0.00 0.00 0.00 4.30
6360 10832 5.065218 CCAACATTCACTACAAGCATACTCC 59.935 44.000 0.00 0.00 0.00 3.85
6361 10833 5.874810 TCCAACATTCACTACAAGCATACTC 59.125 40.000 0.00 0.00 0.00 2.59
6362 10834 5.804639 TCCAACATTCACTACAAGCATACT 58.195 37.500 0.00 0.00 0.00 2.12
6363 10835 6.683974 ATCCAACATTCACTACAAGCATAC 57.316 37.500 0.00 0.00 0.00 2.39
6364 10836 8.046708 ACTTATCCAACATTCACTACAAGCATA 58.953 33.333 0.00 0.00 0.00 3.14
6365 10837 6.886459 ACTTATCCAACATTCACTACAAGCAT 59.114 34.615 0.00 0.00 0.00 3.79
6646 11121 4.151883 ACTATCTTTCCAAAAAGCTGGCA 58.848 39.130 0.00 0.00 41.44 4.92
6805 11297 8.974060 ACTGAGAACCAACTTTTAATTGACTA 57.026 30.769 0.00 0.00 0.00 2.59
6806 11298 7.881775 ACTGAGAACCAACTTTTAATTGACT 57.118 32.000 0.00 0.00 0.00 3.41
7090 11592 7.475015 CCACAGTATAACAAAACATGGATGAG 58.525 38.462 0.00 0.00 0.00 2.90
7297 11819 4.572389 CCTCACGGAGAATTTCCTAACATG 59.428 45.833 2.84 0.00 44.41 3.21
7343 11865 1.180029 CCCCACCATGCTCTTCTTTG 58.820 55.000 0.00 0.00 0.00 2.77
7360 11882 1.913419 TCACCAACCCATAGACTTCCC 59.087 52.381 0.00 0.00 0.00 3.97
7449 11976 4.156739 GGTTGCCTTCCTATTCTCTTTGTG 59.843 45.833 0.00 0.00 0.00 3.33
7593 12128 6.090783 CCAACATTCATGAGTTCATCACAAG 58.909 40.000 0.00 0.00 41.91 3.16
7598 12133 5.885230 TCACCAACATTCATGAGTTCATC 57.115 39.130 0.00 0.00 33.61 2.92
7607 12142 5.018809 AGCTAAACCATCACCAACATTCAT 58.981 37.500 0.00 0.00 0.00 2.57
7673 12210 4.631131 TCCAATTACTAGCATCCATGTCG 58.369 43.478 0.00 0.00 0.00 4.35
7680 12217 7.439655 AGTTCGAAATCTCCAATTACTAGCATC 59.560 37.037 0.00 0.00 0.00 3.91
7686 12223 4.636206 GGCAGTTCGAAATCTCCAATTACT 59.364 41.667 0.00 0.00 0.00 2.24
7700 12237 1.118965 TCAGGAACAGGGCAGTTCGA 61.119 55.000 13.54 5.99 46.81 3.71
7701 12238 0.036010 ATCAGGAACAGGGCAGTTCG 60.036 55.000 13.54 4.15 46.81 3.95
7715 12252 5.750067 GCTTGGTGCAAAATACATTATCAGG 59.250 40.000 0.00 0.00 42.31 3.86
7716 12253 6.567050 AGCTTGGTGCAAAATACATTATCAG 58.433 36.000 0.00 0.00 45.94 2.90
7717 12254 6.528537 AGCTTGGTGCAAAATACATTATCA 57.471 33.333 0.00 0.00 45.94 2.15
7757 12296 6.552859 TTAACTGTCGCTGAAATCATTTCA 57.447 33.333 12.35 12.35 46.68 2.69
7758 12297 7.218963 GGAATTAACTGTCGCTGAAATCATTTC 59.781 37.037 2.87 2.87 40.08 2.17
7759 12298 7.029563 GGAATTAACTGTCGCTGAAATCATTT 58.970 34.615 0.00 0.00 0.00 2.32
7760 12299 6.555315 GGAATTAACTGTCGCTGAAATCATT 58.445 36.000 0.00 0.00 0.00 2.57
7761 12300 5.220662 CGGAATTAACTGTCGCTGAAATCAT 60.221 40.000 0.00 0.00 0.00 2.45
7781 12320 7.649533 TTCATACTACTAACTCCATTCGGAA 57.350 36.000 0.00 0.00 42.21 4.30
7788 12327 5.216622 AGCCCATTCATACTACTAACTCCA 58.783 41.667 0.00 0.00 0.00 3.86
7789 12328 5.810080 AGCCCATTCATACTACTAACTCC 57.190 43.478 0.00 0.00 0.00 3.85
7791 12330 6.561519 ACAAGCCCATTCATACTACTAACT 57.438 37.500 0.00 0.00 0.00 2.24
7792 12331 6.038271 CCAACAAGCCCATTCATACTACTAAC 59.962 42.308 0.00 0.00 0.00 2.34
7793 12332 6.069905 TCCAACAAGCCCATTCATACTACTAA 60.070 38.462 0.00 0.00 0.00 2.24
7794 12333 5.427157 TCCAACAAGCCCATTCATACTACTA 59.573 40.000 0.00 0.00 0.00 1.82
7795 12334 4.227300 TCCAACAAGCCCATTCATACTACT 59.773 41.667 0.00 0.00 0.00 2.57
7796 12335 4.523083 TCCAACAAGCCCATTCATACTAC 58.477 43.478 0.00 0.00 0.00 2.73
7797 12336 4.853468 TCCAACAAGCCCATTCATACTA 57.147 40.909 0.00 0.00 0.00 1.82
7798 12337 3.737559 TCCAACAAGCCCATTCATACT 57.262 42.857 0.00 0.00 0.00 2.12
7799 12338 4.021544 TGTTTCCAACAAGCCCATTCATAC 60.022 41.667 0.00 0.00 38.72 2.39
7800 12339 4.155709 TGTTTCCAACAAGCCCATTCATA 58.844 39.130 0.00 0.00 38.72 2.15
7801 12340 2.971330 TGTTTCCAACAAGCCCATTCAT 59.029 40.909 0.00 0.00 38.72 2.57
7802 12341 2.392662 TGTTTCCAACAAGCCCATTCA 58.607 42.857 0.00 0.00 38.72 2.57
7803 12342 3.006752 TCATGTTTCCAACAAGCCCATTC 59.993 43.478 0.00 0.00 45.86 2.67
7804 12343 2.971330 TCATGTTTCCAACAAGCCCATT 59.029 40.909 0.00 0.00 45.86 3.16
7805 12344 2.564062 CTCATGTTTCCAACAAGCCCAT 59.436 45.455 0.00 0.00 45.86 4.00
7806 12345 1.962807 CTCATGTTTCCAACAAGCCCA 59.037 47.619 0.00 0.00 45.86 5.36
7807 12346 1.337167 GCTCATGTTTCCAACAAGCCC 60.337 52.381 2.99 0.00 45.86 5.19
7808 12347 2.070262 GCTCATGTTTCCAACAAGCC 57.930 50.000 2.99 0.00 45.86 4.35
7809 12348 1.337167 GGGCTCATGTTTCCAACAAGC 60.337 52.381 5.18 5.18 45.86 4.01
7810 12349 1.068333 CGGGCTCATGTTTCCAACAAG 60.068 52.381 0.00 0.00 45.86 3.16
7811 12350 0.958091 CGGGCTCATGTTTCCAACAA 59.042 50.000 0.00 0.00 45.86 2.83
7812 12351 0.109532 TCGGGCTCATGTTTCCAACA 59.890 50.000 0.00 0.00 46.94 3.33
7813 12352 0.804989 CTCGGGCTCATGTTTCCAAC 59.195 55.000 0.00 0.00 0.00 3.77
7814 12353 0.400213 ACTCGGGCTCATGTTTCCAA 59.600 50.000 0.00 0.00 0.00 3.53
7815 12354 1.066430 GTACTCGGGCTCATGTTTCCA 60.066 52.381 0.00 0.00 0.00 3.53
7816 12355 1.207329 AGTACTCGGGCTCATGTTTCC 59.793 52.381 0.00 0.00 0.00 3.13
7817 12356 2.674796 AGTACTCGGGCTCATGTTTC 57.325 50.000 0.00 0.00 0.00 2.78
7818 12357 3.097614 ACTAGTACTCGGGCTCATGTTT 58.902 45.455 0.00 0.00 0.00 2.83
7819 12358 2.736347 ACTAGTACTCGGGCTCATGTT 58.264 47.619 0.00 0.00 0.00 2.71
7820 12359 2.438800 ACTAGTACTCGGGCTCATGT 57.561 50.000 0.00 0.00 0.00 3.21
7821 12360 4.321304 CCAATACTAGTACTCGGGCTCATG 60.321 50.000 4.31 0.00 0.00 3.07
7822 12361 3.827302 CCAATACTAGTACTCGGGCTCAT 59.173 47.826 4.31 0.00 0.00 2.90
7823 12362 3.220110 CCAATACTAGTACTCGGGCTCA 58.780 50.000 4.31 0.00 0.00 4.26
7824 12363 3.220940 ACCAATACTAGTACTCGGGCTC 58.779 50.000 4.31 0.00 0.00 4.70
7825 12364 3.309600 ACCAATACTAGTACTCGGGCT 57.690 47.619 4.31 0.00 0.00 5.19
7826 12365 4.582240 ACTAACCAATACTAGTACTCGGGC 59.418 45.833 4.31 0.00 0.00 6.13
7827 12366 6.705863 AACTAACCAATACTAGTACTCGGG 57.294 41.667 4.31 7.04 0.00 5.14
7859 12398 0.861837 CACGCGCCAATCTATTCTCC 59.138 55.000 5.73 0.00 0.00 3.71
7865 12404 0.869880 CACGATCACGCGCCAATCTA 60.870 55.000 5.73 0.00 43.96 1.98
7866 12405 2.167219 CACGATCACGCGCCAATCT 61.167 57.895 5.73 0.00 43.96 2.40
7867 12406 1.966493 AACACGATCACGCGCCAATC 61.966 55.000 5.73 5.92 43.96 2.67
7868 12407 1.573829 AAACACGATCACGCGCCAAT 61.574 50.000 5.73 0.00 43.96 3.16
7870 12409 0.944788 TAAAACACGATCACGCGCCA 60.945 50.000 5.73 0.00 43.96 5.69
7871 12410 0.372334 ATAAAACACGATCACGCGCC 59.628 50.000 5.73 0.00 43.96 6.53
7876 12531 4.696402 TGGTGGGTTATAAAACACGATCAC 59.304 41.667 12.16 0.00 42.30 3.06
7882 12537 3.410508 TCGGTGGTGGGTTATAAAACAC 58.589 45.455 10.72 10.72 39.63 3.32
7948 12603 6.469782 AATTCTCTGGCAACTGAAAAAGAA 57.530 33.333 0.00 0.00 44.56 2.52
7978 12633 1.275291 GTACCTAGTTGCTCTGTGGCA 59.725 52.381 0.00 0.00 40.74 4.92
7979 12634 1.550976 AGTACCTAGTTGCTCTGTGGC 59.449 52.381 0.00 0.00 0.00 5.01
7988 12643 4.012374 TCTAACCGTGGAGTACCTAGTTG 58.988 47.826 0.00 0.00 37.04 3.16
7989 12644 4.307032 TCTAACCGTGGAGTACCTAGTT 57.693 45.455 0.00 0.00 37.04 2.24
7990 12645 4.013050 GTTCTAACCGTGGAGTACCTAGT 58.987 47.826 0.00 0.00 37.04 2.57
8029 12967 1.081242 CCTGCCGTTGTGACATTGC 60.081 57.895 0.00 0.00 0.00 3.56
8169 13114 0.250124 TTACCAGCCTGTCCAACACG 60.250 55.000 0.00 0.00 0.00 4.49
8293 13239 1.544246 TGTCACACCACGATCTCGATT 59.456 47.619 6.60 0.00 43.02 3.34
8304 13250 4.979335 TCTGATAACCAATTGTCACACCA 58.021 39.130 4.43 0.00 32.96 4.17
8444 13394 0.393808 CCGAACCGATCAAACCCCAT 60.394 55.000 0.00 0.00 0.00 4.00
8493 13443 2.986413 AGCTGTCGCGTCTGGACT 60.986 61.111 5.77 0.00 42.32 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.