Multiple sequence alignment - TraesCS4B01G116800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G116800 chr4B 100.000 3059 0 0 1 3059 134826669 134823611 0.000000e+00 5650.0
1 TraesCS4B01G116800 chr4B 93.113 363 23 2 1 361 377799180 377798818 5.810000e-147 531.0
2 TraesCS4B01G116800 chr4D 92.902 2522 104 30 556 3052 95290820 95288349 0.000000e+00 3596.0
3 TraesCS4B01G116800 chr4A 89.617 1830 85 34 556 2341 484671718 484673486 0.000000e+00 2230.0
4 TraesCS4B01G116800 chr4A 92.712 590 19 10 2429 3008 484673697 484674272 0.000000e+00 830.0
5 TraesCS4B01G116800 chr2D 93.207 368 21 4 1 364 520039798 520040165 3.470000e-149 538.0
6 TraesCS4B01G116800 chr2B 92.818 362 23 3 1 360 25808712 25809072 3.500000e-144 521.0
7 TraesCS4B01G116800 chr2B 93.017 358 23 2 1 356 778781978 778782335 3.500000e-144 521.0
8 TraesCS4B01G116800 chr2B 91.870 369 26 4 1 365 718639945 718639577 2.100000e-141 512.0
9 TraesCS4B01G116800 chr3B 92.371 367 24 4 1 365 421110318 421110682 1.260000e-143 520.0
10 TraesCS4B01G116800 chr6B 91.870 369 27 3 1 367 652706473 652706106 2.100000e-141 512.0
11 TraesCS4B01G116800 chr6A 92.479 359 24 3 1 356 446523362 446523720 7.570000e-141 510.0
12 TraesCS4B01G116800 chr5D 92.222 360 26 2 1 358 30811834 30812193 2.720000e-140 508.0
13 TraesCS4B01G116800 chrUn 87.624 202 25 0 1530 1731 67924636 67924837 5.100000e-58 235.0
14 TraesCS4B01G116800 chr5A 87.624 202 25 0 1530 1731 278299834 278299633 5.100000e-58 235.0
15 TraesCS4B01G116800 chr7D 75.758 231 36 15 1535 1755 414087256 414087036 6.980000e-17 99.0
16 TraesCS4B01G116800 chr7A 75.221 226 46 10 1535 1755 475962905 475962685 6.980000e-17 99.0
17 TraesCS4B01G116800 chr7B 75.743 202 43 6 1557 1755 428483411 428483213 2.510000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G116800 chr4B 134823611 134826669 3058 True 5650 5650 100.0000 1 3059 1 chr4B.!!$R1 3058
1 TraesCS4B01G116800 chr4D 95288349 95290820 2471 True 3596 3596 92.9020 556 3052 1 chr4D.!!$R1 2496
2 TraesCS4B01G116800 chr4A 484671718 484674272 2554 False 1530 2230 91.1645 556 3008 2 chr4A.!!$F1 2452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 422 0.031585 TCCAGAAACCGGATATCGCG 59.968 55.0 9.46 0.0 37.59 5.87 F
422 423 0.249322 CCAGAAACCGGATATCGCGT 60.249 55.0 9.46 0.0 37.59 6.01 F
1969 1991 0.178981 ATCAAACCACAGCCTGCAGT 60.179 50.0 13.81 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1690 0.878416 GGTTGTGCTTGCCGTTGATA 59.122 50.000 0.0 0.0 0.0 2.15 R
1978 2000 1.152839 CCTCCTCCTCCTCCTCGTC 60.153 68.421 0.0 0.0 0.0 4.20 R
3026 3230 1.066573 CGCACTTTGAGATCCTGACCT 60.067 52.381 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.047059 GCAGTTGCCATGTGCGCT 62.047 61.111 9.73 0.00 45.60 5.92
48 49 2.126618 CAGTTGCCATGTGCGCTG 60.127 61.111 9.73 0.00 45.60 5.18
49 50 4.047059 AGTTGCCATGTGCGCTGC 62.047 61.111 9.73 1.68 45.60 5.25
50 51 4.345962 GTTGCCATGTGCGCTGCA 62.346 61.111 9.73 8.47 45.60 4.41
51 52 3.603671 TTGCCATGTGCGCTGCAA 61.604 55.556 9.73 12.82 45.60 4.08
52 53 3.148031 TTGCCATGTGCGCTGCAAA 62.148 52.632 9.73 0.41 45.60 3.68
53 54 2.356075 GCCATGTGCGCTGCAAAA 60.356 55.556 9.73 0.00 41.47 2.44
54 55 2.660612 GCCATGTGCGCTGCAAAAC 61.661 57.895 9.73 0.00 41.47 2.43
55 56 1.300003 CCATGTGCGCTGCAAAACA 60.300 52.632 9.73 3.19 41.47 2.83
56 57 0.668096 CCATGTGCGCTGCAAAACAT 60.668 50.000 9.73 5.90 41.47 2.71
57 58 1.402588 CCATGTGCGCTGCAAAACATA 60.403 47.619 9.73 0.00 41.47 2.29
58 59 2.532235 CATGTGCGCTGCAAAACATAT 58.468 42.857 9.73 0.07 41.47 1.78
59 60 1.979897 TGTGCGCTGCAAAACATATG 58.020 45.000 9.73 0.00 41.47 1.78
60 61 1.270971 GTGCGCTGCAAAACATATGG 58.729 50.000 9.73 0.00 41.47 2.74
61 62 0.458197 TGCGCTGCAAAACATATGGC 60.458 50.000 9.73 1.08 34.76 4.40
62 63 0.458197 GCGCTGCAAAACATATGGCA 60.458 50.000 7.80 5.96 34.66 4.92
63 64 1.993542 CGCTGCAAAACATATGGCAA 58.006 45.000 7.80 0.00 35.59 4.52
64 65 1.655099 CGCTGCAAAACATATGGCAAC 59.345 47.619 7.80 1.67 35.59 4.17
65 66 2.671914 CGCTGCAAAACATATGGCAACT 60.672 45.455 7.80 0.00 35.59 3.16
66 67 3.427368 CGCTGCAAAACATATGGCAACTA 60.427 43.478 7.80 0.00 35.59 2.24
67 68 4.107622 GCTGCAAAACATATGGCAACTAG 58.892 43.478 7.80 0.31 35.59 2.57
68 69 4.107622 CTGCAAAACATATGGCAACTAGC 58.892 43.478 7.80 2.65 44.65 3.42
77 78 4.404691 GCAACTAGCAGCTTGGGT 57.595 55.556 0.00 0.00 44.79 4.51
78 79 1.878775 GCAACTAGCAGCTTGGGTG 59.121 57.895 0.00 4.37 44.79 4.61
79 80 0.890996 GCAACTAGCAGCTTGGGTGT 60.891 55.000 0.00 0.00 44.79 4.16
80 81 0.877071 CAACTAGCAGCTTGGGTGTG 59.123 55.000 0.00 0.00 33.19 3.82
81 82 0.764890 AACTAGCAGCTTGGGTGTGA 59.235 50.000 0.00 0.00 33.19 3.58
82 83 0.322975 ACTAGCAGCTTGGGTGTGAG 59.677 55.000 0.00 0.00 33.19 3.51
83 84 0.610174 CTAGCAGCTTGGGTGTGAGA 59.390 55.000 0.00 0.00 33.19 3.27
84 85 0.610174 TAGCAGCTTGGGTGTGAGAG 59.390 55.000 0.00 0.00 33.19 3.20
85 86 1.123861 AGCAGCTTGGGTGTGAGAGA 61.124 55.000 0.00 0.00 33.19 3.10
86 87 0.673022 GCAGCTTGGGTGTGAGAGAG 60.673 60.000 0.00 0.00 33.19 3.20
87 88 0.972134 CAGCTTGGGTGTGAGAGAGA 59.028 55.000 0.00 0.00 0.00 3.10
88 89 1.345741 CAGCTTGGGTGTGAGAGAGAA 59.654 52.381 0.00 0.00 0.00 2.87
89 90 1.622811 AGCTTGGGTGTGAGAGAGAAG 59.377 52.381 0.00 0.00 0.00 2.85
90 91 1.620819 GCTTGGGTGTGAGAGAGAAGA 59.379 52.381 0.00 0.00 0.00 2.87
91 92 2.611722 GCTTGGGTGTGAGAGAGAAGAC 60.612 54.545 0.00 0.00 0.00 3.01
92 93 1.248486 TGGGTGTGAGAGAGAAGACG 58.752 55.000 0.00 0.00 0.00 4.18
93 94 0.528470 GGGTGTGAGAGAGAAGACGG 59.472 60.000 0.00 0.00 0.00 4.79
94 95 1.535833 GGTGTGAGAGAGAAGACGGA 58.464 55.000 0.00 0.00 0.00 4.69
95 96 1.200484 GGTGTGAGAGAGAAGACGGAC 59.800 57.143 0.00 0.00 0.00 4.79
96 97 1.135916 GTGTGAGAGAGAAGACGGACG 60.136 57.143 0.00 0.00 0.00 4.79
97 98 1.158434 GTGAGAGAGAAGACGGACGT 58.842 55.000 0.00 0.00 0.00 4.34
98 99 1.135916 GTGAGAGAGAAGACGGACGTG 60.136 57.143 0.53 0.00 0.00 4.49
99 100 1.158434 GAGAGAGAAGACGGACGTGT 58.842 55.000 0.53 0.00 0.00 4.49
100 101 0.875728 AGAGAGAAGACGGACGTGTG 59.124 55.000 0.53 0.00 0.00 3.82
101 102 0.109689 GAGAGAAGACGGACGTGTGG 60.110 60.000 0.53 0.00 0.00 4.17
102 103 1.080705 GAGAAGACGGACGTGTGGG 60.081 63.158 0.53 0.00 0.00 4.61
103 104 1.803366 GAGAAGACGGACGTGTGGGT 61.803 60.000 0.53 0.00 0.00 4.51
104 105 1.663702 GAAGACGGACGTGTGGGTG 60.664 63.158 0.53 0.00 0.00 4.61
105 106 2.079020 GAAGACGGACGTGTGGGTGA 62.079 60.000 0.53 0.00 0.00 4.02
106 107 2.049433 GACGGACGTGTGGGTGAG 60.049 66.667 0.53 0.00 0.00 3.51
107 108 2.520020 ACGGACGTGTGGGTGAGA 60.520 61.111 0.00 0.00 0.00 3.27
108 109 1.874345 GACGGACGTGTGGGTGAGAT 61.874 60.000 0.53 0.00 0.00 2.75
109 110 1.446099 CGGACGTGTGGGTGAGATG 60.446 63.158 0.00 0.00 0.00 2.90
110 111 1.079127 GGACGTGTGGGTGAGATGG 60.079 63.158 0.00 0.00 0.00 3.51
111 112 1.741770 GACGTGTGGGTGAGATGGC 60.742 63.158 0.00 0.00 0.00 4.40
112 113 2.347114 CGTGTGGGTGAGATGGCA 59.653 61.111 0.00 0.00 0.00 4.92
113 114 1.302431 CGTGTGGGTGAGATGGCAA 60.302 57.895 0.00 0.00 0.00 4.52
114 115 0.888736 CGTGTGGGTGAGATGGCAAA 60.889 55.000 0.00 0.00 0.00 3.68
115 116 1.549203 GTGTGGGTGAGATGGCAAAT 58.451 50.000 0.00 0.00 0.00 2.32
116 117 1.203052 GTGTGGGTGAGATGGCAAATG 59.797 52.381 0.00 0.00 0.00 2.32
117 118 0.174162 GTGGGTGAGATGGCAAATGC 59.826 55.000 0.00 0.00 41.14 3.56
129 130 1.713597 GCAAATGCCCAAACACTAGC 58.286 50.000 0.00 0.00 34.31 3.42
130 131 1.672737 GCAAATGCCCAAACACTAGCC 60.673 52.381 0.00 0.00 34.31 3.93
131 132 1.895131 CAAATGCCCAAACACTAGCCT 59.105 47.619 0.00 0.00 0.00 4.58
132 133 2.299867 CAAATGCCCAAACACTAGCCTT 59.700 45.455 0.00 0.00 0.00 4.35
133 134 2.309136 ATGCCCAAACACTAGCCTTT 57.691 45.000 0.00 0.00 0.00 3.11
134 135 1.327303 TGCCCAAACACTAGCCTTTG 58.673 50.000 5.95 5.95 0.00 2.77
135 136 1.328279 GCCCAAACACTAGCCTTTGT 58.672 50.000 10.37 0.00 0.00 2.83
136 137 1.000274 GCCCAAACACTAGCCTTTGTG 60.000 52.381 10.37 0.00 39.80 3.33
137 138 1.000274 CCCAAACACTAGCCTTTGTGC 60.000 52.381 10.37 0.00 37.68 4.57
138 139 1.334960 CCAAACACTAGCCTTTGTGCG 60.335 52.381 10.37 0.00 37.68 5.34
139 140 1.333619 CAAACACTAGCCTTTGTGCGT 59.666 47.619 5.05 0.00 37.68 5.24
140 141 0.944386 AACACTAGCCTTTGTGCGTG 59.056 50.000 0.00 0.00 37.68 5.34
141 142 1.207593 CACTAGCCTTTGTGCGTGC 59.792 57.895 0.00 0.00 36.02 5.34
142 143 2.317609 ACTAGCCTTTGTGCGTGCG 61.318 57.895 0.00 0.00 36.02 5.34
143 144 2.280524 TAGCCTTTGTGCGTGCGT 60.281 55.556 0.00 0.00 36.02 5.24
144 145 2.498761 CTAGCCTTTGTGCGTGCGTG 62.499 60.000 0.00 0.00 36.02 5.34
145 146 4.980903 GCCTTTGTGCGTGCGTGG 62.981 66.667 0.00 0.00 0.00 4.94
146 147 3.276091 CCTTTGTGCGTGCGTGGA 61.276 61.111 0.00 0.00 0.00 4.02
147 148 2.712539 CTTTGTGCGTGCGTGGAA 59.287 55.556 0.00 0.00 0.00 3.53
148 149 1.063327 CTTTGTGCGTGCGTGGAAA 59.937 52.632 0.00 0.00 0.00 3.13
149 150 0.929824 CTTTGTGCGTGCGTGGAAAG 60.930 55.000 0.00 0.00 0.00 2.62
150 151 1.649390 TTTGTGCGTGCGTGGAAAGT 61.649 50.000 0.00 0.00 0.00 2.66
151 152 2.052237 GTGCGTGCGTGGAAAGTG 60.052 61.111 0.00 0.00 0.00 3.16
152 153 3.276091 TGCGTGCGTGGAAAGTGG 61.276 61.111 0.00 0.00 0.00 4.00
153 154 4.683334 GCGTGCGTGGAAAGTGGC 62.683 66.667 0.00 0.00 0.00 5.01
154 155 4.368808 CGTGCGTGGAAAGTGGCG 62.369 66.667 0.00 0.00 0.00 5.69
155 156 3.276846 GTGCGTGGAAAGTGGCGT 61.277 61.111 0.00 0.00 0.00 5.68
156 157 3.276091 TGCGTGGAAAGTGGCGTG 61.276 61.111 0.00 0.00 0.00 5.34
157 158 3.276846 GCGTGGAAAGTGGCGTGT 61.277 61.111 0.00 0.00 0.00 4.49
158 159 2.631428 CGTGGAAAGTGGCGTGTG 59.369 61.111 0.00 0.00 0.00 3.82
159 160 2.892334 CGTGGAAAGTGGCGTGTGG 61.892 63.158 0.00 0.00 0.00 4.17
160 161 2.203280 TGGAAAGTGGCGTGTGGG 60.203 61.111 0.00 0.00 0.00 4.61
161 162 3.670377 GGAAAGTGGCGTGTGGGC 61.670 66.667 0.00 0.00 42.69 5.36
162 163 4.025401 GAAAGTGGCGTGTGGGCG 62.025 66.667 0.00 0.00 46.04 6.13
163 164 4.868116 AAAGTGGCGTGTGGGCGT 62.868 61.111 0.00 0.00 46.04 5.68
164 165 3.463728 AAAGTGGCGTGTGGGCGTA 62.464 57.895 0.00 0.00 46.04 4.42
165 166 4.675029 AGTGGCGTGTGGGCGTAC 62.675 66.667 0.00 0.00 46.04 3.67
166 167 4.675029 GTGGCGTGTGGGCGTACT 62.675 66.667 0.00 0.00 46.04 2.73
167 168 4.673298 TGGCGTGTGGGCGTACTG 62.673 66.667 0.00 0.00 46.04 2.74
170 171 3.112075 CGTGTGGGCGTACTGCTG 61.112 66.667 9.06 0.00 45.43 4.41
171 172 2.342279 GTGTGGGCGTACTGCTGA 59.658 61.111 9.06 0.00 45.43 4.26
172 173 1.301401 GTGTGGGCGTACTGCTGAA 60.301 57.895 9.06 0.00 45.43 3.02
173 174 1.301401 TGTGGGCGTACTGCTGAAC 60.301 57.895 9.06 6.42 45.43 3.18
174 175 2.048597 TGGGCGTACTGCTGAACG 60.049 61.111 9.06 0.00 45.43 3.95
175 176 2.048503 GGGCGTACTGCTGAACGT 60.049 61.111 9.06 0.00 45.43 3.99
176 177 1.666872 GGGCGTACTGCTGAACGTT 60.667 57.895 0.00 0.00 45.43 3.99
177 178 1.623973 GGGCGTACTGCTGAACGTTC 61.624 60.000 21.42 21.42 45.43 3.95
178 179 0.942410 GGCGTACTGCTGAACGTTCA 60.942 55.000 28.07 28.07 45.43 3.18
179 180 0.161024 GCGTACTGCTGAACGTTCAC 59.839 55.000 26.53 21.55 41.10 3.18
180 181 1.483316 CGTACTGCTGAACGTTCACA 58.517 50.000 26.53 24.38 34.48 3.58
181 182 1.189446 CGTACTGCTGAACGTTCACAC 59.811 52.381 26.53 20.62 34.48 3.82
182 183 2.198406 GTACTGCTGAACGTTCACACA 58.802 47.619 26.53 23.65 32.90 3.72
183 184 1.006832 ACTGCTGAACGTTCACACAC 58.993 50.000 26.53 15.96 32.90 3.82
184 185 0.304705 CTGCTGAACGTTCACACACC 59.695 55.000 26.53 12.65 32.90 4.16
185 186 0.391793 TGCTGAACGTTCACACACCA 60.392 50.000 26.53 14.82 32.90 4.17
186 187 0.304705 GCTGAACGTTCACACACCAG 59.695 55.000 26.53 15.79 32.90 4.00
187 188 0.304705 CTGAACGTTCACACACCAGC 59.695 55.000 26.53 0.00 32.90 4.85
188 189 1.092921 TGAACGTTCACACACCAGCC 61.093 55.000 26.53 0.00 31.01 4.85
189 190 1.782028 GAACGTTCACACACCAGCCC 61.782 60.000 23.12 0.00 0.00 5.19
190 191 2.978010 CGTTCACACACCAGCCCC 60.978 66.667 0.00 0.00 0.00 5.80
191 192 2.515901 GTTCACACACCAGCCCCT 59.484 61.111 0.00 0.00 0.00 4.79
192 193 1.600916 GTTCACACACCAGCCCCTC 60.601 63.158 0.00 0.00 0.00 4.30
193 194 2.829384 TTCACACACCAGCCCCTCC 61.829 63.158 0.00 0.00 0.00 4.30
194 195 4.351054 CACACACCAGCCCCTCCC 62.351 72.222 0.00 0.00 0.00 4.30
204 205 3.246112 CCCCTCCCGTGTGGTGAA 61.246 66.667 0.00 0.00 34.77 3.18
205 206 2.824880 CCCCTCCCGTGTGGTGAAA 61.825 63.158 0.00 0.00 34.77 2.69
206 207 1.599797 CCCTCCCGTGTGGTGAAAC 60.600 63.158 0.00 0.00 34.77 2.78
207 208 1.959226 CCTCCCGTGTGGTGAAACG 60.959 63.158 0.00 0.00 38.12 3.60
211 212 4.007940 CGTGTGGTGAAACGGCCG 62.008 66.667 26.86 26.86 38.12 6.13
212 213 2.898343 GTGTGGTGAAACGGCCGT 60.898 61.111 28.70 28.70 38.12 5.68
213 214 2.897846 TGTGGTGAAACGGCCGTG 60.898 61.111 34.95 3.06 38.12 4.94
214 215 2.898343 GTGGTGAAACGGCCGTGT 60.898 61.111 34.95 29.73 38.12 4.49
215 216 2.897846 TGGTGAAACGGCCGTGTG 60.898 61.111 34.95 1.63 38.12 3.82
216 217 3.656045 GGTGAAACGGCCGTGTGG 61.656 66.667 34.95 1.14 38.12 4.17
217 218 3.656045 GTGAAACGGCCGTGTGGG 61.656 66.667 34.95 0.21 39.58 4.61
242 243 2.972505 GTGACGCCCACACACCAG 60.973 66.667 3.95 0.00 45.03 4.00
243 244 4.248842 TGACGCCCACACACCAGG 62.249 66.667 0.00 0.00 0.00 4.45
244 245 4.250305 GACGCCCACACACCAGGT 62.250 66.667 0.00 0.00 0.00 4.00
245 246 4.250305 ACGCCCACACACCAGGTC 62.250 66.667 0.00 0.00 0.00 3.85
246 247 4.248842 CGCCCACACACCAGGTCA 62.249 66.667 0.00 0.00 0.00 4.02
247 248 2.281761 GCCCACACACCAGGTCAG 60.282 66.667 0.00 0.00 0.00 3.51
248 249 3.120086 GCCCACACACCAGGTCAGT 62.120 63.158 0.00 0.00 0.00 3.41
249 250 1.071471 CCCACACACCAGGTCAGTC 59.929 63.158 0.00 0.00 0.00 3.51
250 251 1.071471 CCACACACCAGGTCAGTCC 59.929 63.158 0.00 0.00 0.00 3.85
252 253 1.338107 CACACACCAGGTCAGTCCTA 58.662 55.000 0.00 0.00 46.24 2.94
253 254 1.902508 CACACACCAGGTCAGTCCTAT 59.097 52.381 0.00 0.00 46.24 2.57
254 255 1.902508 ACACACCAGGTCAGTCCTATG 59.097 52.381 0.00 0.00 46.24 2.23
255 256 1.902508 CACACCAGGTCAGTCCTATGT 59.097 52.381 0.00 0.00 46.24 2.29
256 257 1.902508 ACACCAGGTCAGTCCTATGTG 59.097 52.381 11.61 11.61 46.24 3.21
257 258 1.208052 CACCAGGTCAGTCCTATGTGG 59.792 57.143 0.00 0.00 46.24 4.17
258 259 0.179000 CCAGGTCAGTCCTATGTGGC 59.821 60.000 0.00 0.00 46.24 5.01
259 260 0.904649 CAGGTCAGTCCTATGTGGCA 59.095 55.000 0.00 0.00 46.24 4.92
260 261 0.905357 AGGTCAGTCCTATGTGGCAC 59.095 55.000 11.55 11.55 46.10 5.01
261 262 0.905357 GGTCAGTCCTATGTGGCACT 59.095 55.000 19.83 6.99 35.26 4.40
262 263 2.108168 GGTCAGTCCTATGTGGCACTA 58.892 52.381 19.83 5.69 35.26 2.74
263 264 2.101582 GGTCAGTCCTATGTGGCACTAG 59.898 54.545 19.83 16.13 35.26 2.57
264 265 3.024547 GTCAGTCCTATGTGGCACTAGA 58.975 50.000 19.83 7.24 35.26 2.43
265 266 3.447586 GTCAGTCCTATGTGGCACTAGAA 59.552 47.826 19.83 0.00 35.26 2.10
266 267 4.081642 GTCAGTCCTATGTGGCACTAGAAA 60.082 45.833 19.83 0.00 35.26 2.52
267 268 4.081642 TCAGTCCTATGTGGCACTAGAAAC 60.082 45.833 19.83 16.15 35.26 2.78
268 269 3.838317 AGTCCTATGTGGCACTAGAAACA 59.162 43.478 19.83 0.00 35.26 2.83
269 270 4.471386 AGTCCTATGTGGCACTAGAAACAT 59.529 41.667 19.83 4.46 37.11 2.71
270 271 4.572389 GTCCTATGTGGCACTAGAAACATG 59.428 45.833 19.83 0.00 35.07 3.21
271 272 4.225042 TCCTATGTGGCACTAGAAACATGT 59.775 41.667 19.83 0.00 35.07 3.21
272 273 4.572389 CCTATGTGGCACTAGAAACATGTC 59.428 45.833 19.83 0.00 35.07 3.06
273 274 3.483808 TGTGGCACTAGAAACATGTCA 57.516 42.857 19.83 0.00 0.00 3.58
274 275 3.814625 TGTGGCACTAGAAACATGTCAA 58.185 40.909 19.83 0.00 27.94 3.18
275 276 3.814842 TGTGGCACTAGAAACATGTCAAG 59.185 43.478 19.83 0.00 27.94 3.02
276 277 4.065088 GTGGCACTAGAAACATGTCAAGA 58.935 43.478 11.13 0.00 27.94 3.02
277 278 4.697352 GTGGCACTAGAAACATGTCAAGAT 59.303 41.667 11.13 0.00 27.94 2.40
278 279 5.182001 GTGGCACTAGAAACATGTCAAGATT 59.818 40.000 11.13 0.00 27.94 2.40
279 280 5.412594 TGGCACTAGAAACATGTCAAGATTC 59.587 40.000 0.00 0.00 0.00 2.52
280 281 5.446473 GGCACTAGAAACATGTCAAGATTCG 60.446 44.000 0.00 0.00 0.00 3.34
281 282 5.120830 GCACTAGAAACATGTCAAGATTCGT 59.879 40.000 0.00 0.00 0.00 3.85
282 283 6.528826 CACTAGAAACATGTCAAGATTCGTG 58.471 40.000 0.00 0.35 0.00 4.35
283 284 4.410492 AGAAACATGTCAAGATTCGTGC 57.590 40.909 0.00 0.00 0.00 5.34
284 285 2.880822 AACATGTCAAGATTCGTGCG 57.119 45.000 0.00 0.00 0.00 5.34
285 286 0.443869 ACATGTCAAGATTCGTGCGC 59.556 50.000 0.00 0.00 0.00 6.09
286 287 0.723414 CATGTCAAGATTCGTGCGCT 59.277 50.000 9.73 0.00 0.00 5.92
287 288 1.002366 ATGTCAAGATTCGTGCGCTC 58.998 50.000 9.73 3.51 0.00 5.03
288 289 0.319469 TGTCAAGATTCGTGCGCTCA 60.319 50.000 9.73 0.00 0.00 4.26
289 290 0.093705 GTCAAGATTCGTGCGCTCAC 59.906 55.000 9.73 0.00 39.78 3.51
307 308 4.867599 GGACGGACGCGGATCCAC 62.868 72.222 12.47 0.00 38.87 4.02
322 323 3.049674 CACGCGTGTGGGCAAGAT 61.050 61.111 30.50 0.00 42.59 2.40
323 324 3.049674 ACGCGTGTGGGCAAGATG 61.050 61.111 12.93 0.00 0.00 2.90
324 325 4.465512 CGCGTGTGGGCAAGATGC 62.466 66.667 0.00 0.00 44.08 3.91
333 334 2.650196 GCAAGATGCAAACGCCCA 59.350 55.556 0.00 0.00 44.26 5.36
334 335 1.734117 GCAAGATGCAAACGCCCAC 60.734 57.895 0.00 0.00 44.26 4.61
335 336 1.659233 CAAGATGCAAACGCCCACA 59.341 52.632 0.00 0.00 0.00 4.17
336 337 0.664166 CAAGATGCAAACGCCCACAC 60.664 55.000 0.00 0.00 0.00 3.82
337 338 1.106351 AAGATGCAAACGCCCACACA 61.106 50.000 0.00 0.00 0.00 3.72
338 339 0.895100 AGATGCAAACGCCCACACAT 60.895 50.000 0.00 0.00 0.00 3.21
339 340 0.733566 GATGCAAACGCCCACACATG 60.734 55.000 0.00 0.00 0.00 3.21
340 341 1.462731 ATGCAAACGCCCACACATGT 61.463 50.000 0.00 0.00 0.00 3.21
341 342 1.661197 GCAAACGCCCACACATGTG 60.661 57.895 24.25 24.25 45.23 3.21
355 356 4.794169 ACACATGTGAGCGTTAAATTTCC 58.206 39.130 31.94 0.00 0.00 3.13
356 357 3.845775 CACATGTGAGCGTTAAATTTCCG 59.154 43.478 21.64 0.00 0.00 4.30
357 358 3.500680 ACATGTGAGCGTTAAATTTCCGT 59.499 39.130 0.00 0.63 0.00 4.69
358 359 4.023536 ACATGTGAGCGTTAAATTTCCGTT 60.024 37.500 0.00 5.83 0.00 4.44
359 360 4.555348 TGTGAGCGTTAAATTTCCGTTT 57.445 36.364 10.66 2.14 0.00 3.60
360 361 4.922719 TGTGAGCGTTAAATTTCCGTTTT 58.077 34.783 10.66 0.22 0.00 2.43
361 362 6.057627 TGTGAGCGTTAAATTTCCGTTTTA 57.942 33.333 10.66 0.00 0.00 1.52
362 363 6.670233 TGTGAGCGTTAAATTTCCGTTTTAT 58.330 32.000 10.66 0.00 0.00 1.40
363 364 7.140048 TGTGAGCGTTAAATTTCCGTTTTATT 58.860 30.769 10.66 0.00 0.00 1.40
364 365 7.648510 TGTGAGCGTTAAATTTCCGTTTTATTT 59.351 29.630 10.66 0.00 0.00 1.40
365 366 8.481641 GTGAGCGTTAAATTTCCGTTTTATTTT 58.518 29.630 10.66 0.00 0.00 1.82
366 367 9.032420 TGAGCGTTAAATTTCCGTTTTATTTTT 57.968 25.926 10.66 0.00 0.00 1.94
367 368 9.296951 GAGCGTTAAATTTCCGTTTTATTTTTG 57.703 29.630 10.66 0.00 0.00 2.44
368 369 8.819015 AGCGTTAAATTTCCGTTTTATTTTTGT 58.181 25.926 10.66 0.00 0.00 2.83
369 370 9.423427 GCGTTAAATTTCCGTTTTATTTTTGTT 57.577 25.926 10.66 0.00 0.00 2.83
376 377 9.928236 ATTTCCGTTTTATTTTTGTTGAACATG 57.072 25.926 0.00 0.00 0.00 3.21
377 378 8.480643 TTCCGTTTTATTTTTGTTGAACATGT 57.519 26.923 0.00 0.00 0.00 3.21
378 379 8.480643 TCCGTTTTATTTTTGTTGAACATGTT 57.519 26.923 11.78 11.78 0.00 2.71
379 380 8.936864 TCCGTTTTATTTTTGTTGAACATGTTT 58.063 25.926 13.36 0.00 0.00 2.83
380 381 9.204792 CCGTTTTATTTTTGTTGAACATGTTTC 57.795 29.630 13.36 6.80 0.00 2.78
381 382 9.965748 CGTTTTATTTTTGTTGAACATGTTTCT 57.034 25.926 13.36 0.00 0.00 2.52
386 387 8.647143 ATTTTTGTTGAACATGTTTCTGTAGG 57.353 30.769 13.36 0.00 0.00 3.18
387 388 4.829064 TGTTGAACATGTTTCTGTAGGC 57.171 40.909 13.36 0.00 0.00 3.93
388 389 3.568007 TGTTGAACATGTTTCTGTAGGCC 59.432 43.478 13.36 0.00 0.00 5.19
389 390 2.422597 TGAACATGTTTCTGTAGGCCG 58.577 47.619 13.36 0.00 0.00 6.13
390 391 2.224426 TGAACATGTTTCTGTAGGCCGT 60.224 45.455 13.36 0.00 0.00 5.68
391 392 1.808411 ACATGTTTCTGTAGGCCGTG 58.192 50.000 0.00 0.00 0.00 4.94
392 393 1.071699 ACATGTTTCTGTAGGCCGTGT 59.928 47.619 0.00 0.00 0.00 4.49
393 394 1.464608 CATGTTTCTGTAGGCCGTGTG 59.535 52.381 0.00 0.00 0.00 3.82
394 395 0.882927 TGTTTCTGTAGGCCGTGTGC 60.883 55.000 0.00 0.00 40.16 4.57
395 396 0.882927 GTTTCTGTAGGCCGTGTGCA 60.883 55.000 0.00 0.00 43.89 4.57
396 397 0.036164 TTTCTGTAGGCCGTGTGCAT 59.964 50.000 0.00 0.00 43.89 3.96
397 398 0.899019 TTCTGTAGGCCGTGTGCATA 59.101 50.000 0.00 0.00 43.89 3.14
398 399 0.459899 TCTGTAGGCCGTGTGCATAG 59.540 55.000 0.00 0.00 43.89 2.23
399 400 1.153449 TGTAGGCCGTGTGCATAGC 60.153 57.895 0.00 0.00 43.89 2.97
400 401 1.144057 GTAGGCCGTGTGCATAGCT 59.856 57.895 0.00 0.00 43.89 3.32
401 402 0.387929 GTAGGCCGTGTGCATAGCTA 59.612 55.000 0.00 0.00 43.89 3.32
402 403 1.000955 GTAGGCCGTGTGCATAGCTAT 59.999 52.381 0.00 0.00 43.89 2.97
403 404 0.034059 AGGCCGTGTGCATAGCTATC 59.966 55.000 2.34 0.00 43.89 2.08
404 405 0.951040 GGCCGTGTGCATAGCTATCC 60.951 60.000 2.34 0.00 43.89 2.59
405 406 0.249868 GCCGTGTGCATAGCTATCCA 60.250 55.000 2.34 0.00 40.77 3.41
406 407 1.788258 CCGTGTGCATAGCTATCCAG 58.212 55.000 2.34 0.00 0.00 3.86
407 408 1.341209 CCGTGTGCATAGCTATCCAGA 59.659 52.381 2.34 0.00 0.00 3.86
408 409 2.224042 CCGTGTGCATAGCTATCCAGAA 60.224 50.000 2.34 0.00 0.00 3.02
409 410 3.457234 CGTGTGCATAGCTATCCAGAAA 58.543 45.455 2.34 0.00 0.00 2.52
410 411 3.246226 CGTGTGCATAGCTATCCAGAAAC 59.754 47.826 2.34 0.00 0.00 2.78
411 412 3.561725 GTGTGCATAGCTATCCAGAAACC 59.438 47.826 2.34 0.00 0.00 3.27
412 413 2.802816 GTGCATAGCTATCCAGAAACCG 59.197 50.000 2.34 0.00 0.00 4.44
413 414 2.224281 TGCATAGCTATCCAGAAACCGG 60.224 50.000 2.34 0.00 0.00 5.28
414 415 2.037251 GCATAGCTATCCAGAAACCGGA 59.963 50.000 9.46 0.00 36.84 5.14
415 416 3.307059 GCATAGCTATCCAGAAACCGGAT 60.307 47.826 9.46 0.00 45.41 4.18
416 417 4.081642 GCATAGCTATCCAGAAACCGGATA 60.082 45.833 9.46 0.00 41.61 2.59
417 418 5.395768 GCATAGCTATCCAGAAACCGGATAT 60.396 44.000 9.46 0.00 43.08 1.63
418 419 4.810191 AGCTATCCAGAAACCGGATATC 57.190 45.455 9.46 2.68 43.08 1.63
419 420 3.193691 AGCTATCCAGAAACCGGATATCG 59.806 47.826 9.46 0.00 43.08 2.92
420 421 2.457366 ATCCAGAAACCGGATATCGC 57.543 50.000 9.46 0.00 41.61 4.58
421 422 0.031585 TCCAGAAACCGGATATCGCG 59.968 55.000 9.46 0.00 37.59 5.87
422 423 0.249322 CCAGAAACCGGATATCGCGT 60.249 55.000 9.46 0.00 37.59 6.01
423 424 1.129326 CAGAAACCGGATATCGCGTC 58.871 55.000 9.46 0.00 37.59 5.19
424 425 0.742505 AGAAACCGGATATCGCGTCA 59.257 50.000 9.46 0.00 37.59 4.35
425 426 1.340248 AGAAACCGGATATCGCGTCAT 59.660 47.619 9.46 0.00 37.59 3.06
426 427 2.555325 AGAAACCGGATATCGCGTCATA 59.445 45.455 9.46 0.00 37.59 2.15
427 428 3.192844 AGAAACCGGATATCGCGTCATAT 59.807 43.478 9.46 2.53 37.59 1.78
428 429 4.397103 AGAAACCGGATATCGCGTCATATA 59.603 41.667 9.46 0.00 37.59 0.86
429 430 4.913335 AACCGGATATCGCGTCATATAT 57.087 40.909 9.46 1.27 37.59 0.86
430 431 6.261603 AGAAACCGGATATCGCGTCATATATA 59.738 38.462 9.46 0.00 37.59 0.86
431 432 6.570672 AACCGGATATCGCGTCATATATAT 57.429 37.500 9.46 0.01 37.59 0.86
432 433 5.939457 ACCGGATATCGCGTCATATATATG 58.061 41.667 9.46 15.47 37.59 1.78
433 434 5.472478 ACCGGATATCGCGTCATATATATGT 59.528 40.000 19.78 4.89 37.59 2.29
434 435 6.016527 ACCGGATATCGCGTCATATATATGTT 60.017 38.462 19.78 5.04 37.59 2.71
435 436 7.173735 ACCGGATATCGCGTCATATATATGTTA 59.826 37.037 19.78 1.79 37.59 2.41
436 437 7.480855 CCGGATATCGCGTCATATATATGTTAC 59.519 40.741 19.78 12.06 37.59 2.50
437 438 7.213891 CGGATATCGCGTCATATATATGTTACG 59.786 40.741 22.97 22.97 37.14 3.18
438 439 7.007188 GGATATCGCGTCATATATATGTTACGC 59.993 40.741 32.00 32.00 46.96 4.42
445 446 7.787935 GCGTCATATATATGTTACGCTTAATGC 59.212 37.037 33.19 20.44 46.93 3.56
446 447 9.020813 CGTCATATATATGTTACGCTTAATGCT 57.979 33.333 19.78 0.00 35.92 3.79
488 489 9.836864 AATAAAAGCTTCCTTTGTTGAAAAGAT 57.163 25.926 0.00 0.00 40.30 2.40
489 490 7.543947 AAAAGCTTCCTTTGTTGAAAAGATG 57.456 32.000 0.00 0.00 40.30 2.90
490 491 5.859205 AGCTTCCTTTGTTGAAAAGATGT 57.141 34.783 0.00 0.00 0.00 3.06
491 492 6.225981 AGCTTCCTTTGTTGAAAAGATGTT 57.774 33.333 0.00 0.00 0.00 2.71
492 493 6.643388 AGCTTCCTTTGTTGAAAAGATGTTT 58.357 32.000 0.00 0.00 0.00 2.83
493 494 7.105588 AGCTTCCTTTGTTGAAAAGATGTTTT 58.894 30.769 0.00 0.00 38.65 2.43
494 495 7.607607 AGCTTCCTTTGTTGAAAAGATGTTTTT 59.392 29.630 1.67 0.00 35.94 1.94
516 517 8.649973 TTTTTGGATTTAAAATTGCACTACGT 57.350 26.923 0.00 0.00 30.39 3.57
517 518 9.745880 TTTTTGGATTTAAAATTGCACTACGTA 57.254 25.926 0.00 0.00 30.39 3.57
518 519 8.958175 TTTGGATTTAAAATTGCACTACGTAG 57.042 30.769 20.97 20.97 0.00 3.51
519 520 7.079182 TGGATTTAAAATTGCACTACGTAGG 57.921 36.000 25.63 15.51 0.00 3.18
520 521 6.655848 TGGATTTAAAATTGCACTACGTAGGT 59.344 34.615 25.63 9.41 0.00 3.08
521 522 7.823310 TGGATTTAAAATTGCACTACGTAGGTA 59.177 33.333 25.63 11.84 0.00 3.08
522 523 8.833493 GGATTTAAAATTGCACTACGTAGGTAT 58.167 33.333 25.63 10.58 0.00 2.73
524 525 9.997482 ATTTAAAATTGCACTACGTAGGTATTG 57.003 29.630 25.63 15.64 33.69 1.90
525 526 6.431198 AAAATTGCACTACGTAGGTATTGG 57.569 37.500 25.63 9.32 31.83 3.16
526 527 5.347620 AATTGCACTACGTAGGTATTGGA 57.652 39.130 25.63 13.45 31.83 3.53
527 528 5.546621 ATTGCACTACGTAGGTATTGGAT 57.453 39.130 25.63 8.06 31.54 3.41
528 529 6.659745 ATTGCACTACGTAGGTATTGGATA 57.340 37.500 25.63 8.18 31.54 2.59
529 530 6.468333 TTGCACTACGTAGGTATTGGATAA 57.532 37.500 25.63 0.75 31.54 1.75
530 531 6.468333 TGCACTACGTAGGTATTGGATAAA 57.532 37.500 25.63 0.00 31.83 1.40
531 532 6.876155 TGCACTACGTAGGTATTGGATAAAA 58.124 36.000 25.63 0.00 31.83 1.52
532 533 7.502696 TGCACTACGTAGGTATTGGATAAAAT 58.497 34.615 25.63 0.00 31.83 1.82
533 534 7.439955 TGCACTACGTAGGTATTGGATAAAATG 59.560 37.037 25.63 10.87 31.83 2.32
534 535 7.570691 GCACTACGTAGGTATTGGATAAAATGC 60.571 40.741 25.63 16.27 31.83 3.56
535 536 7.656137 CACTACGTAGGTATTGGATAAAATGCT 59.344 37.037 25.63 0.00 0.00 3.79
536 537 8.863086 ACTACGTAGGTATTGGATAAAATGCTA 58.137 33.333 25.63 0.00 0.00 3.49
537 538 9.871238 CTACGTAGGTATTGGATAAAATGCTAT 57.129 33.333 15.07 0.00 0.00 2.97
538 539 8.547967 ACGTAGGTATTGGATAAAATGCTATG 57.452 34.615 0.00 0.00 0.00 2.23
539 540 8.372459 ACGTAGGTATTGGATAAAATGCTATGA 58.628 33.333 0.00 0.00 0.00 2.15
540 541 9.383519 CGTAGGTATTGGATAAAATGCTATGAT 57.616 33.333 0.00 0.00 0.00 2.45
542 543 8.498054 AGGTATTGGATAAAATGCTATGATCG 57.502 34.615 0.00 0.00 0.00 3.69
543 544 8.321353 AGGTATTGGATAAAATGCTATGATCGA 58.679 33.333 0.00 0.00 0.00 3.59
544 545 8.946085 GGTATTGGATAAAATGCTATGATCGAA 58.054 33.333 0.00 0.00 0.00 3.71
547 548 7.439157 TGGATAAAATGCTATGATCGAAAGG 57.561 36.000 0.00 0.00 0.00 3.11
548 549 6.430925 TGGATAAAATGCTATGATCGAAAGGG 59.569 38.462 0.00 0.00 0.00 3.95
549 550 4.574599 AAAATGCTATGATCGAAAGGGC 57.425 40.909 0.00 0.00 0.00 5.19
550 551 2.936919 ATGCTATGATCGAAAGGGCA 57.063 45.000 0.00 0.00 0.00 5.36
551 552 2.245159 TGCTATGATCGAAAGGGCAG 57.755 50.000 0.00 0.00 0.00 4.85
552 553 1.762370 TGCTATGATCGAAAGGGCAGA 59.238 47.619 0.00 0.00 0.00 4.26
553 554 2.224137 TGCTATGATCGAAAGGGCAGAG 60.224 50.000 0.00 0.00 0.00 3.35
554 555 2.869636 GCTATGATCGAAAGGGCAGAGG 60.870 54.545 0.00 0.00 0.00 3.69
576 577 4.382362 GGATTCCTCAATTCAAAAGGGCAG 60.382 45.833 0.00 0.00 0.00 4.85
671 678 1.079819 TGAAGCTAGCTGACACGGC 60.080 57.895 20.16 2.86 35.73 5.68
672 679 1.079819 GAAGCTAGCTGACACGGCA 60.080 57.895 20.16 0.00 38.37 5.69
713 720 5.600696 CATTGGCTTCCCGCTAAAAATAAT 58.399 37.500 0.00 0.00 42.63 1.28
714 721 6.737346 GCATTGGCTTCCCGCTAAAAATAATA 60.737 38.462 0.00 0.00 42.63 0.98
715 722 6.385649 TTGGCTTCCCGCTAAAAATAATAG 57.614 37.500 0.00 0.00 36.06 1.73
716 723 5.442391 TGGCTTCCCGCTAAAAATAATAGT 58.558 37.500 0.00 0.00 39.13 2.12
717 724 6.593807 TGGCTTCCCGCTAAAAATAATAGTA 58.406 36.000 0.00 0.00 39.13 1.82
718 725 6.484308 TGGCTTCCCGCTAAAAATAATAGTAC 59.516 38.462 0.00 0.00 39.13 2.73
719 726 6.347160 GGCTTCCCGCTAAAAATAATAGTACG 60.347 42.308 0.00 0.00 39.13 3.67
770 779 4.338815 TCTACGCAGAGAGTGGGG 57.661 61.111 0.00 0.00 43.48 4.96
847 856 2.092753 TCCCTCTCTTAATTGCAGCAGG 60.093 50.000 0.00 0.00 0.00 4.85
848 857 2.356535 CCCTCTCTTAATTGCAGCAGGT 60.357 50.000 0.00 0.00 0.00 4.00
914 923 3.066760 GGCAGCTCTACTTTCTCTCTCTC 59.933 52.174 0.00 0.00 0.00 3.20
915 924 3.066760 GCAGCTCTACTTTCTCTCTCTCC 59.933 52.174 0.00 0.00 0.00 3.71
918 927 3.380320 GCTCTACTTTCTCTCTCTCCACC 59.620 52.174 0.00 0.00 0.00 4.61
955 964 2.499289 GCTCATCTCCTTCCTCAGTTCA 59.501 50.000 0.00 0.00 0.00 3.18
965 974 1.825474 TCCTCAGTTCATTCGTCTCCC 59.175 52.381 0.00 0.00 0.00 4.30
991 1000 0.940519 CCGTTCGCTCAAACCGTGTA 60.941 55.000 0.00 0.00 0.00 2.90
1239 1248 1.272769 GTCAACTCCGTCTACCAGCTT 59.727 52.381 0.00 0.00 0.00 3.74
1286 1295 3.878519 CGACGACGAGGAGGAGGC 61.879 72.222 0.00 0.00 42.66 4.70
1446 1461 0.962356 CCAACTCCATCTTGGCGCTT 60.962 55.000 7.64 0.00 37.47 4.68
1668 1690 1.975407 CCTCGTGTGGTACCTCCGT 60.975 63.158 14.36 0.00 39.52 4.69
1869 1891 2.745100 AGCACATGTGGCTGCGAG 60.745 61.111 26.55 0.00 40.80 5.03
1955 1977 1.638388 CGCTCGCCTGCTTCATCAAA 61.638 55.000 0.00 0.00 0.00 2.69
1969 1991 0.178981 ATCAAACCACAGCCTGCAGT 60.179 50.000 13.81 0.00 0.00 4.40
1976 1998 2.281970 CAGCCTGCAGTGCAAGGA 60.282 61.111 27.56 5.39 38.41 3.36
1977 1999 2.282040 AGCCTGCAGTGCAAGGAC 60.282 61.111 27.56 20.38 38.41 3.85
1978 2000 3.730761 GCCTGCAGTGCAAGGACG 61.731 66.667 27.56 14.16 38.41 4.79
2066 2091 2.289072 GGAGTGCACACTAGCTTCTTGA 60.289 50.000 21.04 0.00 42.66 3.02
2078 2103 6.812160 CACTAGCTTCTTGATTAGTTAACCGT 59.188 38.462 0.88 0.00 0.00 4.83
2119 2151 2.566913 GAGATCTCGAGAGCACTACCA 58.433 52.381 30.48 0.00 31.88 3.25
2120 2152 2.289547 GAGATCTCGAGAGCACTACCAC 59.710 54.545 30.48 10.09 31.88 4.16
2121 2153 1.003331 GATCTCGAGAGCACTACCACG 60.003 57.143 25.07 0.00 0.00 4.94
2159 2191 4.966787 GGCCCACTTGGAACGCCA 62.967 66.667 8.67 0.00 44.17 5.69
2180 2212 5.742838 GCCAGAATTTCCCAAGAATTTGTGT 60.743 40.000 0.00 0.00 36.02 3.72
2184 2216 8.143835 CAGAATTTCCCAAGAATTTGTGTTAGT 58.856 33.333 0.00 0.00 34.44 2.24
2191 2226 5.685511 CCAAGAATTTGTGTTAGTTTCCACG 59.314 40.000 0.00 0.00 34.28 4.94
2286 2334 8.824781 CAATTTTTAAAATGTGATGACACCACA 58.175 29.630 4.76 4.76 46.90 4.17
2299 2347 2.930040 GACACCACAATCATACGGAGTG 59.070 50.000 0.00 0.00 46.68 3.51
2341 2391 1.048724 CGTTGGAGCCTGGAGGGATA 61.049 60.000 0.00 0.00 37.23 2.59
2344 2394 0.268869 TGGAGCCTGGAGGGATACAT 59.731 55.000 0.00 0.00 39.80 2.29
2367 2417 5.462530 TGGGATCCAATGTATAGTACGTG 57.537 43.478 15.23 0.00 0.00 4.49
2368 2418 5.141910 TGGGATCCAATGTATAGTACGTGA 58.858 41.667 15.23 0.00 0.00 4.35
2370 2420 5.924825 GGGATCCAATGTATAGTACGTGAAC 59.075 44.000 15.23 0.00 0.00 3.18
2371 2421 6.461927 GGGATCCAATGTATAGTACGTGAACA 60.462 42.308 15.23 0.00 0.00 3.18
2372 2422 6.641314 GGATCCAATGTATAGTACGTGAACAG 59.359 42.308 6.95 0.00 0.00 3.16
2374 2424 7.160547 TCCAATGTATAGTACGTGAACAGAA 57.839 36.000 0.00 0.00 0.00 3.02
2375 2425 7.604549 TCCAATGTATAGTACGTGAACAGAAA 58.395 34.615 0.00 0.00 0.00 2.52
2376 2426 8.089597 TCCAATGTATAGTACGTGAACAGAAAA 58.910 33.333 0.00 0.00 0.00 2.29
2377 2427 8.714179 CCAATGTATAGTACGTGAACAGAAAAA 58.286 33.333 0.00 0.00 0.00 1.94
2413 2473 4.223032 ACTCCCACTGAAATCAATAGTCGT 59.777 41.667 0.00 0.00 0.00 4.34
2467 2650 7.283807 TCCATCAATTACTGCGAGTTACTACTA 59.716 37.037 0.00 0.00 33.84 1.82
2468 2651 8.082852 CCATCAATTACTGCGAGTTACTACTAT 58.917 37.037 0.00 0.00 33.84 2.12
2471 2654 9.334947 TCAATTACTGCGAGTTACTACTATACT 57.665 33.333 0.00 0.00 33.84 2.12
2499 2682 1.212490 CCGACCGCTGGTTAACGTA 59.788 57.895 0.00 0.00 35.25 3.57
2736 2925 6.550371 CGAAGTACGTGTACCTAATTTCAG 57.450 41.667 0.00 0.00 36.75 3.02
2748 2941 5.308825 ACCTAATTTCAGTGTTCTCTGTGG 58.691 41.667 0.00 0.00 36.85 4.17
2751 2944 5.757850 AATTTCAGTGTTCTCTGTGGAAC 57.242 39.130 0.00 0.00 43.97 3.62
2911 3115 2.512515 GACTGATCGCACTGGGCC 60.513 66.667 0.00 0.00 40.31 5.80
2968 3172 1.227263 CCTCCCTGTATTCCGTGCG 60.227 63.158 0.00 0.00 0.00 5.34
3000 3204 7.805163 TGCTTTCCTCCTCAAGATATAAATGA 58.195 34.615 0.00 0.00 0.00 2.57
3004 3208 9.618890 TTTCCTCCTCAAGATATAAATGAAGTG 57.381 33.333 0.00 0.00 0.00 3.16
3026 3230 4.709886 TGCTGGCAGTACTAGTATTCTGAA 59.290 41.667 19.58 9.22 0.00 3.02
3052 3256 1.696832 GATCTCAAAGTGCGTCCGGC 61.697 60.000 0.00 0.00 43.96 6.13
3053 3257 2.172483 ATCTCAAAGTGCGTCCGGCT 62.172 55.000 0.00 0.00 44.05 5.52
3054 3258 2.664851 TCAAAGTGCGTCCGGCTG 60.665 61.111 0.00 0.00 44.05 4.85
3055 3259 4.389576 CAAAGTGCGTCCGGCTGC 62.390 66.667 10.44 10.44 44.05 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.802816 CTGCCCTAGTGCGCTTTATAAG 59.197 50.000 9.73 0.00 0.00 1.73
13 14 2.169769 ACTGCCCTAGTGCGCTTTATAA 59.830 45.455 9.73 0.00 38.49 0.98
14 15 1.760613 ACTGCCCTAGTGCGCTTTATA 59.239 47.619 9.73 0.00 38.49 0.98
15 16 0.541863 ACTGCCCTAGTGCGCTTTAT 59.458 50.000 9.73 0.00 38.49 1.40
16 17 0.323629 AACTGCCCTAGTGCGCTTTA 59.676 50.000 9.73 0.00 40.26 1.85
17 18 1.073199 AACTGCCCTAGTGCGCTTT 59.927 52.632 9.73 0.00 40.26 3.51
18 19 1.672356 CAACTGCCCTAGTGCGCTT 60.672 57.895 9.73 0.00 40.26 4.68
19 20 2.046892 CAACTGCCCTAGTGCGCT 60.047 61.111 9.73 4.58 40.26 5.92
20 21 3.804193 GCAACTGCCCTAGTGCGC 61.804 66.667 0.00 0.00 40.26 6.09
30 31 4.047059 AGCGCACATGGCAACTGC 62.047 61.111 11.47 9.17 45.17 4.40
31 32 2.126618 CAGCGCACATGGCAACTG 60.127 61.111 11.47 4.95 45.17 3.16
32 33 4.047059 GCAGCGCACATGGCAACT 62.047 61.111 11.47 0.00 45.17 3.16
33 34 3.844858 TTGCAGCGCACATGGCAAC 62.845 57.895 11.47 0.00 45.17 4.17
34 35 2.639883 TTTTGCAGCGCACATGGCAA 62.640 50.000 11.47 14.31 45.17 4.52
35 36 3.148031 TTTTGCAGCGCACATGGCA 62.148 52.632 11.47 8.47 45.17 4.92
36 37 2.356075 TTTTGCAGCGCACATGGC 60.356 55.556 11.47 5.57 38.71 4.40
37 38 0.668096 ATGTTTTGCAGCGCACATGG 60.668 50.000 11.47 0.00 38.71 3.66
38 39 1.979897 TATGTTTTGCAGCGCACATG 58.020 45.000 11.47 0.00 38.71 3.21
39 40 2.532235 CATATGTTTTGCAGCGCACAT 58.468 42.857 11.47 12.19 38.71 3.21
40 41 1.402588 CCATATGTTTTGCAGCGCACA 60.403 47.619 11.47 4.16 38.71 4.57
41 42 1.270971 CCATATGTTTTGCAGCGCAC 58.729 50.000 11.47 0.68 38.71 5.34
42 43 0.458197 GCCATATGTTTTGCAGCGCA 60.458 50.000 11.47 0.00 36.47 6.09
43 44 0.458197 TGCCATATGTTTTGCAGCGC 60.458 50.000 0.00 0.00 0.00 5.92
44 45 1.655099 GTTGCCATATGTTTTGCAGCG 59.345 47.619 1.24 0.00 34.81 5.18
45 46 2.963432 AGTTGCCATATGTTTTGCAGC 58.037 42.857 9.45 9.45 34.81 5.25
46 47 4.107622 GCTAGTTGCCATATGTTTTGCAG 58.892 43.478 1.24 0.00 34.81 4.41
47 48 3.509184 TGCTAGTTGCCATATGTTTTGCA 59.491 39.130 1.24 1.00 42.00 4.08
48 49 4.107622 CTGCTAGTTGCCATATGTTTTGC 58.892 43.478 1.24 0.00 42.00 3.68
49 50 4.107622 GCTGCTAGTTGCCATATGTTTTG 58.892 43.478 1.24 0.00 42.00 2.44
50 51 4.019174 AGCTGCTAGTTGCCATATGTTTT 58.981 39.130 0.00 0.00 42.00 2.43
51 52 3.624777 AGCTGCTAGTTGCCATATGTTT 58.375 40.909 0.00 0.00 42.00 2.83
52 53 3.287867 AGCTGCTAGTTGCCATATGTT 57.712 42.857 0.00 0.00 42.00 2.71
53 54 2.947652 CAAGCTGCTAGTTGCCATATGT 59.052 45.455 0.90 0.00 42.00 2.29
54 55 2.292569 CCAAGCTGCTAGTTGCCATATG 59.707 50.000 0.90 0.00 42.00 1.78
55 56 2.579873 CCAAGCTGCTAGTTGCCATAT 58.420 47.619 0.90 0.00 42.00 1.78
56 57 1.408683 CCCAAGCTGCTAGTTGCCATA 60.409 52.381 0.90 0.00 42.00 2.74
57 58 0.682209 CCCAAGCTGCTAGTTGCCAT 60.682 55.000 0.90 0.00 42.00 4.40
58 59 1.303561 CCCAAGCTGCTAGTTGCCA 60.304 57.895 0.90 0.00 42.00 4.92
59 60 1.303643 ACCCAAGCTGCTAGTTGCC 60.304 57.895 0.90 0.00 42.00 4.52
60 61 0.890996 ACACCCAAGCTGCTAGTTGC 60.891 55.000 0.90 0.00 43.25 4.17
61 62 0.877071 CACACCCAAGCTGCTAGTTG 59.123 55.000 0.90 0.00 0.00 3.16
62 63 0.764890 TCACACCCAAGCTGCTAGTT 59.235 50.000 0.90 0.00 0.00 2.24
63 64 0.322975 CTCACACCCAAGCTGCTAGT 59.677 55.000 0.90 0.00 0.00 2.57
64 65 0.610174 TCTCACACCCAAGCTGCTAG 59.390 55.000 0.90 0.00 0.00 3.42
65 66 0.610174 CTCTCACACCCAAGCTGCTA 59.390 55.000 0.90 0.00 0.00 3.49
66 67 1.123861 TCTCTCACACCCAAGCTGCT 61.124 55.000 0.00 0.00 0.00 4.24
67 68 0.673022 CTCTCTCACACCCAAGCTGC 60.673 60.000 0.00 0.00 0.00 5.25
68 69 0.972134 TCTCTCTCACACCCAAGCTG 59.028 55.000 0.00 0.00 0.00 4.24
69 70 1.622811 CTTCTCTCTCACACCCAAGCT 59.377 52.381 0.00 0.00 0.00 3.74
70 71 1.620819 TCTTCTCTCTCACACCCAAGC 59.379 52.381 0.00 0.00 0.00 4.01
71 72 2.352225 CGTCTTCTCTCTCACACCCAAG 60.352 54.545 0.00 0.00 0.00 3.61
72 73 1.613925 CGTCTTCTCTCTCACACCCAA 59.386 52.381 0.00 0.00 0.00 4.12
73 74 1.248486 CGTCTTCTCTCTCACACCCA 58.752 55.000 0.00 0.00 0.00 4.51
74 75 0.528470 CCGTCTTCTCTCTCACACCC 59.472 60.000 0.00 0.00 0.00 4.61
75 76 1.200484 GTCCGTCTTCTCTCTCACACC 59.800 57.143 0.00 0.00 0.00 4.16
76 77 1.135916 CGTCCGTCTTCTCTCTCACAC 60.136 57.143 0.00 0.00 0.00 3.82
77 78 1.157585 CGTCCGTCTTCTCTCTCACA 58.842 55.000 0.00 0.00 0.00 3.58
78 79 1.135916 CACGTCCGTCTTCTCTCTCAC 60.136 57.143 0.00 0.00 0.00 3.51
79 80 1.157585 CACGTCCGTCTTCTCTCTCA 58.842 55.000 0.00 0.00 0.00 3.27
80 81 1.135916 CACACGTCCGTCTTCTCTCTC 60.136 57.143 0.00 0.00 0.00 3.20
81 82 0.875728 CACACGTCCGTCTTCTCTCT 59.124 55.000 0.00 0.00 0.00 3.10
82 83 0.109689 CCACACGTCCGTCTTCTCTC 60.110 60.000 0.00 0.00 0.00 3.20
83 84 1.524863 CCCACACGTCCGTCTTCTCT 61.525 60.000 0.00 0.00 0.00 3.10
84 85 1.080705 CCCACACGTCCGTCTTCTC 60.081 63.158 0.00 0.00 0.00 2.87
85 86 1.831286 ACCCACACGTCCGTCTTCT 60.831 57.895 0.00 0.00 0.00 2.85
86 87 1.663702 CACCCACACGTCCGTCTTC 60.664 63.158 0.00 0.00 0.00 2.87
87 88 2.083835 CTCACCCACACGTCCGTCTT 62.084 60.000 0.00 0.00 0.00 3.01
88 89 2.520020 TCACCCACACGTCCGTCT 60.520 61.111 0.00 0.00 0.00 4.18
89 90 1.874345 ATCTCACCCACACGTCCGTC 61.874 60.000 0.00 0.00 0.00 4.79
90 91 1.906824 ATCTCACCCACACGTCCGT 60.907 57.895 0.00 0.00 0.00 4.69
91 92 1.446099 CATCTCACCCACACGTCCG 60.446 63.158 0.00 0.00 0.00 4.79
92 93 1.079127 CCATCTCACCCACACGTCC 60.079 63.158 0.00 0.00 0.00 4.79
93 94 1.741770 GCCATCTCACCCACACGTC 60.742 63.158 0.00 0.00 0.00 4.34
94 95 2.050836 TTGCCATCTCACCCACACGT 62.051 55.000 0.00 0.00 0.00 4.49
95 96 0.888736 TTTGCCATCTCACCCACACG 60.889 55.000 0.00 0.00 0.00 4.49
96 97 1.203052 CATTTGCCATCTCACCCACAC 59.797 52.381 0.00 0.00 0.00 3.82
97 98 1.548081 CATTTGCCATCTCACCCACA 58.452 50.000 0.00 0.00 0.00 4.17
98 99 0.174162 GCATTTGCCATCTCACCCAC 59.826 55.000 0.00 0.00 34.31 4.61
99 100 2.582272 GCATTTGCCATCTCACCCA 58.418 52.632 0.00 0.00 34.31 4.51
110 111 1.672737 GGCTAGTGTTTGGGCATTTGC 60.673 52.381 0.00 0.00 41.14 3.68
111 112 1.895131 AGGCTAGTGTTTGGGCATTTG 59.105 47.619 0.00 0.00 0.00 2.32
112 113 2.309136 AGGCTAGTGTTTGGGCATTT 57.691 45.000 0.00 0.00 0.00 2.32
113 114 2.299867 CAAAGGCTAGTGTTTGGGCATT 59.700 45.455 9.80 0.00 31.24 3.56
114 115 1.895131 CAAAGGCTAGTGTTTGGGCAT 59.105 47.619 9.80 0.00 31.24 4.40
115 116 1.327303 CAAAGGCTAGTGTTTGGGCA 58.673 50.000 9.80 0.00 31.24 5.36
116 117 1.000274 CACAAAGGCTAGTGTTTGGGC 60.000 52.381 17.85 0.00 37.87 5.36
117 118 1.000274 GCACAAAGGCTAGTGTTTGGG 60.000 52.381 17.79 15.93 39.61 4.12
118 119 1.334960 CGCACAAAGGCTAGTGTTTGG 60.335 52.381 17.79 10.85 37.87 3.28
119 120 1.333619 ACGCACAAAGGCTAGTGTTTG 59.666 47.619 17.79 14.09 39.19 2.93
120 121 1.333619 CACGCACAAAGGCTAGTGTTT 59.666 47.619 17.79 5.99 38.02 2.83
121 122 0.944386 CACGCACAAAGGCTAGTGTT 59.056 50.000 17.79 6.28 38.02 3.32
122 123 1.507141 GCACGCACAAAGGCTAGTGT 61.507 55.000 17.79 9.37 38.02 3.55
123 124 1.207593 GCACGCACAAAGGCTAGTG 59.792 57.895 13.81 13.81 38.74 2.74
124 125 2.317609 CGCACGCACAAAGGCTAGT 61.318 57.895 0.00 0.00 0.00 2.57
125 126 2.317609 ACGCACGCACAAAGGCTAG 61.318 57.895 0.00 0.00 0.00 3.42
126 127 2.280524 ACGCACGCACAAAGGCTA 60.281 55.556 0.00 0.00 0.00 3.93
127 128 3.952675 CACGCACGCACAAAGGCT 61.953 61.111 0.00 0.00 0.00 4.58
128 129 4.980903 CCACGCACGCACAAAGGC 62.981 66.667 0.00 0.00 0.00 4.35
129 130 2.329678 TTTCCACGCACGCACAAAGG 62.330 55.000 0.00 0.00 0.00 3.11
130 131 0.929824 CTTTCCACGCACGCACAAAG 60.930 55.000 0.00 0.00 0.00 2.77
131 132 1.063327 CTTTCCACGCACGCACAAA 59.937 52.632 0.00 0.00 0.00 2.83
132 133 2.109739 ACTTTCCACGCACGCACAA 61.110 52.632 0.00 0.00 0.00 3.33
133 134 2.512745 ACTTTCCACGCACGCACA 60.513 55.556 0.00 0.00 0.00 4.57
134 135 2.052237 CACTTTCCACGCACGCAC 60.052 61.111 0.00 0.00 0.00 5.34
135 136 3.276091 CCACTTTCCACGCACGCA 61.276 61.111 0.00 0.00 0.00 5.24
136 137 4.683334 GCCACTTTCCACGCACGC 62.683 66.667 0.00 0.00 0.00 5.34
137 138 4.368808 CGCCACTTTCCACGCACG 62.369 66.667 0.00 0.00 0.00 5.34
138 139 3.276846 ACGCCACTTTCCACGCAC 61.277 61.111 0.00 0.00 0.00 5.34
139 140 3.276091 CACGCCACTTTCCACGCA 61.276 61.111 0.00 0.00 0.00 5.24
140 141 3.276846 ACACGCCACTTTCCACGC 61.277 61.111 0.00 0.00 0.00 5.34
141 142 2.631428 CACACGCCACTTTCCACG 59.369 61.111 0.00 0.00 0.00 4.94
142 143 2.551912 CCCACACGCCACTTTCCAC 61.552 63.158 0.00 0.00 0.00 4.02
143 144 2.203280 CCCACACGCCACTTTCCA 60.203 61.111 0.00 0.00 0.00 3.53
144 145 3.670377 GCCCACACGCCACTTTCC 61.670 66.667 0.00 0.00 0.00 3.13
145 146 4.025401 CGCCCACACGCCACTTTC 62.025 66.667 0.00 0.00 0.00 2.62
146 147 3.463728 TACGCCCACACGCCACTTT 62.464 57.895 0.00 0.00 36.19 2.66
147 148 3.931247 TACGCCCACACGCCACTT 61.931 61.111 0.00 0.00 36.19 3.16
148 149 4.675029 GTACGCCCACACGCCACT 62.675 66.667 0.00 0.00 36.19 4.00
149 150 4.675029 AGTACGCCCACACGCCAC 62.675 66.667 0.00 0.00 36.19 5.01
150 151 4.673298 CAGTACGCCCACACGCCA 62.673 66.667 0.00 0.00 36.19 5.69
153 154 3.112075 CAGCAGTACGCCCACACG 61.112 66.667 6.15 0.00 44.04 4.49
154 155 1.301401 TTCAGCAGTACGCCCACAC 60.301 57.895 6.15 0.00 44.04 3.82
155 156 1.301401 GTTCAGCAGTACGCCCACA 60.301 57.895 6.15 0.00 44.04 4.17
156 157 2.380410 CGTTCAGCAGTACGCCCAC 61.380 63.158 6.15 1.49 44.04 4.61
157 158 2.048597 CGTTCAGCAGTACGCCCA 60.049 61.111 6.15 0.00 44.04 5.36
158 159 1.623973 GAACGTTCAGCAGTACGCCC 61.624 60.000 23.12 0.00 41.50 6.13
159 160 0.942410 TGAACGTTCAGCAGTACGCC 60.942 55.000 26.53 0.00 41.50 5.68
160 161 0.161024 GTGAACGTTCAGCAGTACGC 59.839 55.000 30.38 12.86 41.50 4.42
161 162 1.189446 GTGTGAACGTTCAGCAGTACG 59.811 52.381 30.38 6.72 43.13 3.67
162 163 2.034001 GTGTGTGAACGTTCAGCAGTAC 60.034 50.000 30.38 23.33 37.98 2.73
163 164 2.198406 GTGTGTGAACGTTCAGCAGTA 58.802 47.619 30.38 18.07 37.98 2.74
164 165 1.006832 GTGTGTGAACGTTCAGCAGT 58.993 50.000 30.38 0.00 37.98 4.40
165 166 0.304705 GGTGTGTGAACGTTCAGCAG 59.695 55.000 30.38 0.00 37.98 4.24
166 167 0.391793 TGGTGTGTGAACGTTCAGCA 60.392 50.000 30.38 26.31 37.98 4.41
167 168 0.304705 CTGGTGTGTGAACGTTCAGC 59.695 55.000 30.38 24.26 37.98 4.26
168 169 0.304705 GCTGGTGTGTGAACGTTCAG 59.695 55.000 30.38 17.62 37.98 3.02
169 170 1.092921 GGCTGGTGTGTGAACGTTCA 61.093 55.000 26.53 26.53 34.20 3.18
170 171 1.647084 GGCTGGTGTGTGAACGTTC 59.353 57.895 21.42 21.42 0.00 3.95
171 172 1.822186 GGGCTGGTGTGTGAACGTT 60.822 57.895 0.00 0.00 0.00 3.99
172 173 2.203153 GGGCTGGTGTGTGAACGT 60.203 61.111 0.00 0.00 0.00 3.99
173 174 2.978010 GGGGCTGGTGTGTGAACG 60.978 66.667 0.00 0.00 0.00 3.95
174 175 1.600916 GAGGGGCTGGTGTGTGAAC 60.601 63.158 0.00 0.00 0.00 3.18
175 176 2.829384 GGAGGGGCTGGTGTGTGAA 61.829 63.158 0.00 0.00 0.00 3.18
176 177 3.249189 GGAGGGGCTGGTGTGTGA 61.249 66.667 0.00 0.00 0.00 3.58
177 178 4.351054 GGGAGGGGCTGGTGTGTG 62.351 72.222 0.00 0.00 0.00 3.82
187 188 2.824880 TTTCACCACACGGGAGGGG 61.825 63.158 5.98 0.00 41.15 4.79
188 189 1.599797 GTTTCACCACACGGGAGGG 60.600 63.158 5.98 1.91 41.15 4.30
189 190 1.959226 CGTTTCACCACACGGGAGG 60.959 63.158 0.00 0.00 41.15 4.30
190 191 3.637714 CGTTTCACCACACGGGAG 58.362 61.111 0.00 0.00 41.15 4.30
194 195 4.007940 CGGCCGTTTCACCACACG 62.008 66.667 19.50 0.00 36.12 4.49
195 196 2.898343 ACGGCCGTTTCACCACAC 60.898 61.111 28.70 0.00 0.00 3.82
196 197 2.897846 CACGGCCGTTTCACCACA 60.898 61.111 32.11 0.00 0.00 4.17
197 198 2.898343 ACACGGCCGTTTCACCAC 60.898 61.111 32.11 0.00 0.00 4.16
198 199 2.897846 CACACGGCCGTTTCACCA 60.898 61.111 32.11 0.00 0.00 4.17
199 200 3.656045 CCACACGGCCGTTTCACC 61.656 66.667 32.11 0.00 0.00 4.02
200 201 3.656045 CCCACACGGCCGTTTCAC 61.656 66.667 32.11 0.00 0.00 3.18
225 226 2.972505 CTGGTGTGTGGGCGTCAC 60.973 66.667 0.00 0.00 46.23 3.67
226 227 4.248842 CCTGGTGTGTGGGCGTCA 62.249 66.667 0.00 0.00 0.00 4.35
227 228 4.250305 ACCTGGTGTGTGGGCGTC 62.250 66.667 0.00 0.00 0.00 5.19
228 229 4.250305 GACCTGGTGTGTGGGCGT 62.250 66.667 2.82 0.00 0.00 5.68
229 230 4.248842 TGACCTGGTGTGTGGGCG 62.249 66.667 2.82 0.00 33.02 6.13
230 231 2.281761 CTGACCTGGTGTGTGGGC 60.282 66.667 2.82 0.00 0.00 5.36
231 232 1.071471 GACTGACCTGGTGTGTGGG 59.929 63.158 2.82 0.00 0.00 4.61
232 233 1.071471 GGACTGACCTGGTGTGTGG 59.929 63.158 2.82 0.00 35.41 4.17
233 234 4.779475 GGACTGACCTGGTGTGTG 57.221 61.111 2.82 0.00 35.41 3.82
242 243 0.905357 AGTGCCACATAGGACTGACC 59.095 55.000 0.00 0.00 41.22 4.02
243 244 3.024547 TCTAGTGCCACATAGGACTGAC 58.975 50.000 0.00 0.00 41.22 3.51
244 245 3.382083 TCTAGTGCCACATAGGACTGA 57.618 47.619 0.00 0.00 41.22 3.41
245 246 4.184629 GTTTCTAGTGCCACATAGGACTG 58.815 47.826 0.00 0.00 41.22 3.51
246 247 3.838317 TGTTTCTAGTGCCACATAGGACT 59.162 43.478 0.00 0.00 41.22 3.85
247 248 4.202245 TGTTTCTAGTGCCACATAGGAC 57.798 45.455 0.00 1.12 41.22 3.85
248 249 4.225042 ACATGTTTCTAGTGCCACATAGGA 59.775 41.667 0.00 0.00 41.22 2.94
249 250 4.517285 ACATGTTTCTAGTGCCACATAGG 58.483 43.478 0.00 0.00 41.84 2.57
250 251 5.178061 TGACATGTTTCTAGTGCCACATAG 58.822 41.667 0.00 0.00 0.00 2.23
251 252 5.159273 TGACATGTTTCTAGTGCCACATA 57.841 39.130 0.00 0.00 0.00 2.29
252 253 4.019792 TGACATGTTTCTAGTGCCACAT 57.980 40.909 0.00 0.00 0.00 3.21
253 254 3.483808 TGACATGTTTCTAGTGCCACA 57.516 42.857 0.00 0.00 0.00 4.17
254 255 4.065088 TCTTGACATGTTTCTAGTGCCAC 58.935 43.478 0.00 0.00 0.00 5.01
255 256 4.350368 TCTTGACATGTTTCTAGTGCCA 57.650 40.909 0.00 0.00 0.00 4.92
256 257 5.446473 CGAATCTTGACATGTTTCTAGTGCC 60.446 44.000 0.00 0.00 0.00 5.01
257 258 5.120830 ACGAATCTTGACATGTTTCTAGTGC 59.879 40.000 0.00 0.00 0.00 4.40
258 259 6.528826 CACGAATCTTGACATGTTTCTAGTG 58.471 40.000 0.00 0.87 0.00 2.74
259 260 5.120830 GCACGAATCTTGACATGTTTCTAGT 59.879 40.000 0.00 0.00 0.00 2.57
260 261 5.554636 GCACGAATCTTGACATGTTTCTAG 58.445 41.667 0.00 0.00 0.00 2.43
261 262 4.091365 CGCACGAATCTTGACATGTTTCTA 59.909 41.667 0.00 0.00 0.00 2.10
262 263 3.120546 CGCACGAATCTTGACATGTTTCT 60.121 43.478 0.00 0.00 0.00 2.52
263 264 3.155998 CGCACGAATCTTGACATGTTTC 58.844 45.455 0.00 0.00 0.00 2.78
264 265 2.665519 GCGCACGAATCTTGACATGTTT 60.666 45.455 0.30 0.00 0.00 2.83
265 266 1.135972 GCGCACGAATCTTGACATGTT 60.136 47.619 0.30 0.00 0.00 2.71
266 267 0.443869 GCGCACGAATCTTGACATGT 59.556 50.000 0.30 0.00 0.00 3.21
267 268 0.723414 AGCGCACGAATCTTGACATG 59.277 50.000 11.47 0.00 0.00 3.21
268 269 1.002366 GAGCGCACGAATCTTGACAT 58.998 50.000 11.47 0.00 0.00 3.06
269 270 0.319469 TGAGCGCACGAATCTTGACA 60.319 50.000 11.47 0.00 0.00 3.58
270 271 0.093705 GTGAGCGCACGAATCTTGAC 59.906 55.000 11.47 0.00 34.94 3.18
271 272 2.445274 GTGAGCGCACGAATCTTGA 58.555 52.632 11.47 0.00 34.94 3.02
290 291 4.867599 GTGGATCCGCGTCCGTCC 62.868 72.222 10.09 7.35 41.35 4.79
305 306 3.049674 ATCTTGCCCACACGCGTG 61.050 61.111 35.99 35.99 43.21 5.34
306 307 3.049674 CATCTTGCCCACACGCGT 61.050 61.111 5.58 5.58 0.00 6.01
307 308 4.465512 GCATCTTGCCCACACGCG 62.466 66.667 3.53 3.53 37.42 6.01
308 309 2.419057 TTTGCATCTTGCCCACACGC 62.419 55.000 0.00 0.00 44.23 5.34
309 310 0.664166 GTTTGCATCTTGCCCACACG 60.664 55.000 0.00 0.00 44.23 4.49
310 311 0.664166 CGTTTGCATCTTGCCCACAC 60.664 55.000 0.00 0.00 44.23 3.82
311 312 1.659233 CGTTTGCATCTTGCCCACA 59.341 52.632 0.00 0.00 44.23 4.17
312 313 1.734117 GCGTTTGCATCTTGCCCAC 60.734 57.895 0.00 0.00 44.23 4.61
313 314 2.650196 GCGTTTGCATCTTGCCCA 59.350 55.556 0.00 0.00 44.23 5.36
314 315 2.125952 GGCGTTTGCATCTTGCCC 60.126 61.111 8.18 0.00 44.23 5.36
315 316 2.125952 GGGCGTTTGCATCTTGCC 60.126 61.111 10.35 10.35 44.23 4.52
316 317 1.734117 GTGGGCGTTTGCATCTTGC 60.734 57.895 0.00 0.00 45.35 4.01
317 318 0.664166 GTGTGGGCGTTTGCATCTTG 60.664 55.000 0.00 0.00 45.35 3.02
318 319 1.106351 TGTGTGGGCGTTTGCATCTT 61.106 50.000 0.00 0.00 45.35 2.40
319 320 0.895100 ATGTGTGGGCGTTTGCATCT 60.895 50.000 0.00 0.00 45.35 2.90
320 321 0.733566 CATGTGTGGGCGTTTGCATC 60.734 55.000 0.00 0.00 45.35 3.91
321 322 1.289694 CATGTGTGGGCGTTTGCAT 59.710 52.632 0.00 0.00 45.35 3.96
322 323 2.124060 ACATGTGTGGGCGTTTGCA 61.124 52.632 0.00 0.00 45.35 4.08
323 324 1.661197 CACATGTGTGGGCGTTTGC 60.661 57.895 18.03 0.00 42.10 3.68
324 325 0.040157 CTCACATGTGTGGGCGTTTG 60.040 55.000 24.63 0.00 45.65 2.93
325 326 2.330254 CTCACATGTGTGGGCGTTT 58.670 52.632 24.63 0.00 45.65 3.60
326 327 4.063529 CTCACATGTGTGGGCGTT 57.936 55.556 24.63 0.00 45.65 4.84
331 332 3.829886 ATTTAACGCTCACATGTGTGG 57.170 42.857 24.63 18.61 45.65 4.17
332 333 4.616802 GGAAATTTAACGCTCACATGTGTG 59.383 41.667 24.63 22.64 46.91 3.82
333 334 4.612712 CGGAAATTTAACGCTCACATGTGT 60.613 41.667 24.63 8.38 0.00 3.72
334 335 3.845775 CGGAAATTTAACGCTCACATGTG 59.154 43.478 20.18 20.18 0.00 3.21
335 336 3.500680 ACGGAAATTTAACGCTCACATGT 59.499 39.130 12.94 0.00 0.00 3.21
336 337 4.078363 ACGGAAATTTAACGCTCACATG 57.922 40.909 12.94 0.00 0.00 3.21
337 338 4.759516 AACGGAAATTTAACGCTCACAT 57.240 36.364 12.94 0.00 0.00 3.21
338 339 4.555348 AAACGGAAATTTAACGCTCACA 57.445 36.364 12.94 0.00 0.00 3.58
339 340 7.557036 AATAAAACGGAAATTTAACGCTCAC 57.443 32.000 12.94 0.00 0.00 3.51
340 341 8.576936 AAAATAAAACGGAAATTTAACGCTCA 57.423 26.923 12.94 0.15 0.00 4.26
341 342 9.296951 CAAAAATAAAACGGAAATTTAACGCTC 57.703 29.630 12.94 0.00 0.00 5.03
342 343 8.819015 ACAAAAATAAAACGGAAATTTAACGCT 58.181 25.926 12.94 0.75 0.00 5.07
343 344 8.975166 ACAAAAATAAAACGGAAATTTAACGC 57.025 26.923 12.94 0.00 0.00 4.84
350 351 9.928236 CATGTTCAACAAAAATAAAACGGAAAT 57.072 25.926 0.00 0.00 0.00 2.17
351 352 8.936864 ACATGTTCAACAAAAATAAAACGGAAA 58.063 25.926 0.00 0.00 0.00 3.13
352 353 8.480643 ACATGTTCAACAAAAATAAAACGGAA 57.519 26.923 0.00 0.00 0.00 4.30
353 354 8.480643 AACATGTTCAACAAAAATAAAACGGA 57.519 26.923 4.92 0.00 0.00 4.69
354 355 9.204792 GAAACATGTTCAACAAAAATAAAACGG 57.795 29.630 12.39 0.00 0.00 4.44
355 356 9.965748 AGAAACATGTTCAACAAAAATAAAACG 57.034 25.926 12.39 0.00 0.00 3.60
360 361 9.743057 CCTACAGAAACATGTTCAACAAAAATA 57.257 29.630 12.39 0.00 34.56 1.40
361 362 7.224557 GCCTACAGAAACATGTTCAACAAAAAT 59.775 33.333 12.39 0.00 34.56 1.82
362 363 6.533367 GCCTACAGAAACATGTTCAACAAAAA 59.467 34.615 12.39 0.00 34.56 1.94
363 364 6.039616 GCCTACAGAAACATGTTCAACAAAA 58.960 36.000 12.39 0.00 34.56 2.44
364 365 5.451242 GGCCTACAGAAACATGTTCAACAAA 60.451 40.000 12.39 0.00 34.56 2.83
365 366 4.037446 GGCCTACAGAAACATGTTCAACAA 59.963 41.667 12.39 0.00 34.56 2.83
366 367 3.568007 GGCCTACAGAAACATGTTCAACA 59.432 43.478 12.39 0.00 34.56 3.33
367 368 3.364964 CGGCCTACAGAAACATGTTCAAC 60.365 47.826 12.39 6.89 34.56 3.18
368 369 2.811431 CGGCCTACAGAAACATGTTCAA 59.189 45.455 12.39 0.00 34.56 2.69
369 370 2.224426 ACGGCCTACAGAAACATGTTCA 60.224 45.455 12.39 0.00 34.56 3.18
370 371 2.159627 CACGGCCTACAGAAACATGTTC 59.840 50.000 12.39 5.78 34.56 3.18
371 372 2.151202 CACGGCCTACAGAAACATGTT 58.849 47.619 4.92 4.92 34.56 2.71
372 373 1.071699 ACACGGCCTACAGAAACATGT 59.928 47.619 0.00 0.00 37.19 3.21
373 374 1.464608 CACACGGCCTACAGAAACATG 59.535 52.381 0.00 0.00 0.00 3.21
374 375 1.808411 CACACGGCCTACAGAAACAT 58.192 50.000 0.00 0.00 0.00 2.71
375 376 0.882927 GCACACGGCCTACAGAAACA 60.883 55.000 0.00 0.00 36.11 2.83
376 377 0.882927 TGCACACGGCCTACAGAAAC 60.883 55.000 0.00 0.00 43.89 2.78
377 378 0.036164 ATGCACACGGCCTACAGAAA 59.964 50.000 0.00 0.00 43.89 2.52
378 379 0.899019 TATGCACACGGCCTACAGAA 59.101 50.000 0.00 0.00 43.89 3.02
379 380 0.459899 CTATGCACACGGCCTACAGA 59.540 55.000 0.00 0.00 43.89 3.41
380 381 1.154205 GCTATGCACACGGCCTACAG 61.154 60.000 0.00 0.00 43.89 2.74
381 382 1.153449 GCTATGCACACGGCCTACA 60.153 57.895 0.00 0.00 43.89 2.74
382 383 0.387929 TAGCTATGCACACGGCCTAC 59.612 55.000 0.00 0.00 43.89 3.18
383 384 1.272490 GATAGCTATGCACACGGCCTA 59.728 52.381 11.94 0.00 43.89 3.93
384 385 0.034059 GATAGCTATGCACACGGCCT 59.966 55.000 11.94 0.00 43.89 5.19
385 386 0.951040 GGATAGCTATGCACACGGCC 60.951 60.000 19.34 4.38 43.89 6.13
386 387 0.249868 TGGATAGCTATGCACACGGC 60.250 55.000 22.55 0.23 45.13 5.68
387 388 1.341209 TCTGGATAGCTATGCACACGG 59.659 52.381 22.55 13.64 30.64 4.94
388 389 2.800881 TCTGGATAGCTATGCACACG 57.199 50.000 22.55 13.97 30.64 4.49
389 390 3.561725 GGTTTCTGGATAGCTATGCACAC 59.438 47.826 22.55 17.79 30.64 3.82
390 391 3.741075 CGGTTTCTGGATAGCTATGCACA 60.741 47.826 22.55 11.32 30.64 4.57
391 392 2.802816 CGGTTTCTGGATAGCTATGCAC 59.197 50.000 22.55 13.28 30.64 4.57
392 393 2.224281 CCGGTTTCTGGATAGCTATGCA 60.224 50.000 24.38 24.38 32.93 3.96
393 394 2.037251 TCCGGTTTCTGGATAGCTATGC 59.963 50.000 17.65 17.65 0.00 3.14
394 395 4.543590 ATCCGGTTTCTGGATAGCTATG 57.456 45.455 11.94 0.00 44.38 2.23
402 403 0.031585 CGCGATATCCGGTTTCTGGA 59.968 55.000 0.00 0.00 40.46 3.86
403 404 0.249322 ACGCGATATCCGGTTTCTGG 60.249 55.000 15.93 0.00 39.04 3.86
404 405 1.129326 GACGCGATATCCGGTTTCTG 58.871 55.000 15.93 0.00 39.04 3.02
405 406 0.742505 TGACGCGATATCCGGTTTCT 59.257 50.000 15.93 0.00 39.04 2.52
406 407 1.779569 ATGACGCGATATCCGGTTTC 58.220 50.000 15.93 0.00 39.04 2.78
407 408 3.587797 ATATGACGCGATATCCGGTTT 57.412 42.857 15.93 0.00 39.04 3.27
408 409 4.913335 ATATATGACGCGATATCCGGTT 57.087 40.909 15.93 0.00 39.04 4.44
409 410 5.472478 ACATATATATGACGCGATATCCGGT 59.528 40.000 26.05 5.93 36.63 5.28
410 411 5.939457 ACATATATATGACGCGATATCCGG 58.061 41.667 26.05 0.00 36.63 5.14
411 412 7.213891 CGTAACATATATATGACGCGATATCCG 59.786 40.741 26.05 10.77 37.97 4.18
412 413 7.007188 GCGTAACATATATATGACGCGATATCC 59.993 40.741 30.14 14.50 44.25 2.59
413 414 7.862622 GCGTAACATATATATGACGCGATATC 58.137 38.462 30.14 14.98 44.25 1.63
414 415 7.777235 GCGTAACATATATATGACGCGATAT 57.223 36.000 30.14 9.47 44.25 1.63
462 463 9.836864 ATCTTTTCAACAAAGGAAGCTTTTATT 57.163 25.926 0.00 0.00 31.83 1.40
463 464 9.264719 CATCTTTTCAACAAAGGAAGCTTTTAT 57.735 29.630 0.00 0.00 31.83 1.40
464 465 8.257306 ACATCTTTTCAACAAAGGAAGCTTTTA 58.743 29.630 0.00 0.00 31.83 1.52
465 466 7.105588 ACATCTTTTCAACAAAGGAAGCTTTT 58.894 30.769 0.00 0.00 31.83 2.27
466 467 6.643388 ACATCTTTTCAACAAAGGAAGCTTT 58.357 32.000 0.00 0.00 31.83 3.51
467 468 6.225981 ACATCTTTTCAACAAAGGAAGCTT 57.774 33.333 0.00 0.00 31.83 3.74
468 469 5.859205 ACATCTTTTCAACAAAGGAAGCT 57.141 34.783 0.00 0.00 31.83 3.74
469 470 6.908870 AAACATCTTTTCAACAAAGGAAGC 57.091 33.333 0.00 0.00 31.83 3.86
491 492 8.649973 ACGTAGTGCAATTTTAAATCCAAAAA 57.350 26.923 0.00 0.00 42.51 1.94
492 493 9.400638 CTACGTAGTGCAATTTTAAATCCAAAA 57.599 29.630 14.66 0.00 45.73 2.44
493 494 8.024285 CCTACGTAGTGCAATTTTAAATCCAAA 58.976 33.333 20.73 0.00 45.73 3.28
494 495 7.175293 ACCTACGTAGTGCAATTTTAAATCCAA 59.825 33.333 20.73 0.00 45.73 3.53
495 496 6.655848 ACCTACGTAGTGCAATTTTAAATCCA 59.344 34.615 20.73 0.00 45.73 3.41
496 497 7.080353 ACCTACGTAGTGCAATTTTAAATCC 57.920 36.000 20.73 0.00 45.73 3.01
498 499 9.997482 CAATACCTACGTAGTGCAATTTTAAAT 57.003 29.630 20.73 0.00 45.73 1.40
499 500 8.452534 CCAATACCTACGTAGTGCAATTTTAAA 58.547 33.333 20.73 0.00 45.73 1.52
500 501 7.823310 TCCAATACCTACGTAGTGCAATTTTAA 59.177 33.333 20.73 1.69 45.73 1.52
501 502 7.329499 TCCAATACCTACGTAGTGCAATTTTA 58.671 34.615 20.73 1.69 45.73 1.52
502 503 6.174760 TCCAATACCTACGTAGTGCAATTTT 58.825 36.000 20.73 2.79 45.73 1.82
503 504 5.736813 TCCAATACCTACGTAGTGCAATTT 58.263 37.500 20.73 3.75 45.73 1.82
504 505 5.347620 TCCAATACCTACGTAGTGCAATT 57.652 39.130 20.73 11.28 45.73 2.32
505 506 5.546621 ATCCAATACCTACGTAGTGCAAT 57.453 39.130 20.73 6.18 45.73 3.56
506 507 6.468333 TTATCCAATACCTACGTAGTGCAA 57.532 37.500 20.73 4.11 45.73 4.08
507 508 6.468333 TTTATCCAATACCTACGTAGTGCA 57.532 37.500 20.73 6.20 45.73 4.57
508 509 7.570691 GCATTTTATCCAATACCTACGTAGTGC 60.571 40.741 20.73 14.00 45.73 4.40
509 510 7.656137 AGCATTTTATCCAATACCTACGTAGTG 59.344 37.037 20.73 14.27 45.73 2.74
511 512 9.871238 ATAGCATTTTATCCAATACCTACGTAG 57.129 33.333 15.92 15.92 0.00 3.51
512 513 9.647797 CATAGCATTTTATCCAATACCTACGTA 57.352 33.333 0.00 0.00 0.00 3.57
513 514 8.372459 TCATAGCATTTTATCCAATACCTACGT 58.628 33.333 0.00 0.00 0.00 3.57
514 515 8.771920 TCATAGCATTTTATCCAATACCTACG 57.228 34.615 0.00 0.00 0.00 3.51
516 517 9.599866 CGATCATAGCATTTTATCCAATACCTA 57.400 33.333 0.00 0.00 0.00 3.08
517 518 8.321353 TCGATCATAGCATTTTATCCAATACCT 58.679 33.333 0.00 0.00 0.00 3.08
518 519 8.492673 TCGATCATAGCATTTTATCCAATACC 57.507 34.615 0.00 0.00 0.00 2.73
521 522 8.517878 CCTTTCGATCATAGCATTTTATCCAAT 58.482 33.333 0.00 0.00 0.00 3.16
522 523 7.040478 CCCTTTCGATCATAGCATTTTATCCAA 60.040 37.037 0.00 0.00 0.00 3.53
523 524 6.430925 CCCTTTCGATCATAGCATTTTATCCA 59.569 38.462 0.00 0.00 0.00 3.41
524 525 6.623767 GCCCTTTCGATCATAGCATTTTATCC 60.624 42.308 0.00 0.00 0.00 2.59
525 526 6.072508 TGCCCTTTCGATCATAGCATTTTATC 60.073 38.462 0.00 0.00 0.00 1.75
526 527 5.769662 TGCCCTTTCGATCATAGCATTTTAT 59.230 36.000 0.00 0.00 0.00 1.40
527 528 5.129634 TGCCCTTTCGATCATAGCATTTTA 58.870 37.500 0.00 0.00 0.00 1.52
528 529 3.953612 TGCCCTTTCGATCATAGCATTTT 59.046 39.130 0.00 0.00 0.00 1.82
529 530 3.554934 TGCCCTTTCGATCATAGCATTT 58.445 40.909 0.00 0.00 0.00 2.32
530 531 3.144506 CTGCCCTTTCGATCATAGCATT 58.855 45.455 0.00 0.00 0.00 3.56
531 532 2.369860 TCTGCCCTTTCGATCATAGCAT 59.630 45.455 0.00 0.00 0.00 3.79
532 533 1.762370 TCTGCCCTTTCGATCATAGCA 59.238 47.619 0.00 0.00 0.00 3.49
533 534 2.411904 CTCTGCCCTTTCGATCATAGC 58.588 52.381 0.00 0.00 0.00 2.97
534 535 2.630098 TCCTCTGCCCTTTCGATCATAG 59.370 50.000 0.00 0.00 0.00 2.23
535 536 2.677914 TCCTCTGCCCTTTCGATCATA 58.322 47.619 0.00 0.00 0.00 2.15
536 537 1.500474 TCCTCTGCCCTTTCGATCAT 58.500 50.000 0.00 0.00 0.00 2.45
537 538 1.500474 ATCCTCTGCCCTTTCGATCA 58.500 50.000 0.00 0.00 0.00 2.92
538 539 2.488952 GAATCCTCTGCCCTTTCGATC 58.511 52.381 0.00 0.00 0.00 3.69
539 540 1.141858 GGAATCCTCTGCCCTTTCGAT 59.858 52.381 0.00 0.00 0.00 3.59
540 541 0.541863 GGAATCCTCTGCCCTTTCGA 59.458 55.000 0.00 0.00 0.00 3.71
541 542 0.543749 AGGAATCCTCTGCCCTTTCG 59.456 55.000 0.00 0.00 0.00 3.46
542 543 2.340210 GAGGAATCCTCTGCCCTTTC 57.660 55.000 21.48 0.00 46.41 2.62
552 553 3.771479 GCCCTTTTGAATTGAGGAATCCT 59.229 43.478 0.00 0.00 36.03 3.24
553 554 3.515104 TGCCCTTTTGAATTGAGGAATCC 59.485 43.478 0.00 0.00 32.11 3.01
554 555 4.463891 TCTGCCCTTTTGAATTGAGGAATC 59.536 41.667 0.00 0.00 32.11 2.52
573 574 9.745323 CGGAATTTATTTTTGAAAATTCTCTGC 57.255 29.630 15.96 3.79 45.24 4.26
671 678 5.803461 CCAATGCAACAGTTGATAGTTGATG 59.197 40.000 17.99 3.91 46.01 3.07
672 679 5.622914 GCCAATGCAACAGTTGATAGTTGAT 60.623 40.000 17.99 0.00 46.01 2.57
738 745 3.235195 GCGTAGAGTTGTAGAGTGTGTG 58.765 50.000 0.00 0.00 0.00 3.82
739 746 2.882761 TGCGTAGAGTTGTAGAGTGTGT 59.117 45.455 0.00 0.00 0.00 3.72
768 777 3.616802 GCCCGTATTTATCTACTCTGCCC 60.617 52.174 0.00 0.00 0.00 5.36
770 779 3.988517 GTGCCCGTATTTATCTACTCTGC 59.011 47.826 0.00 0.00 0.00 4.26
847 856 2.610374 CAGCGTGAGGTAGAGAGTAGAC 59.390 54.545 0.00 0.00 41.81 2.59
848 857 2.907634 CAGCGTGAGGTAGAGAGTAGA 58.092 52.381 0.00 0.00 41.81 2.59
914 923 2.202623 GAGCGAGCTGTACGGTGG 60.203 66.667 0.84 0.00 41.38 4.61
915 924 2.577112 CGAGCGAGCTGTACGGTG 60.577 66.667 0.84 0.00 41.38 4.94
974 983 0.788391 CCTACACGGTTTGAGCGAAC 59.212 55.000 6.53 0.00 42.41 3.95
979 988 1.071071 TGGAACCCTACACGGTTTGAG 59.929 52.381 0.00 0.00 46.35 3.02
982 991 2.510613 CATTGGAACCCTACACGGTTT 58.489 47.619 0.00 0.00 46.35 3.27
1095 1104 4.148825 CGGAAGGAGGCCGTCTGG 62.149 72.222 0.00 0.00 43.66 3.86
1239 1248 1.712018 CGTCGGCGGAGATGTAGTCA 61.712 60.000 7.21 0.00 0.00 3.41
1295 1310 2.267006 CATCCAGCTCCAGCACGT 59.733 61.111 0.48 0.00 45.16 4.49
1482 1497 4.214327 GGCTTCTCCTCGGCCTCG 62.214 72.222 0.00 0.00 42.31 4.63
1668 1690 0.878416 GGTTGTGCTTGCCGTTGATA 59.122 50.000 0.00 0.00 0.00 2.15
1743 1765 4.117661 GCGGAAGAGGACGACGCT 62.118 66.667 0.00 0.00 46.02 5.07
1955 1977 3.719646 TTGCACTGCAGGCTGTGGT 62.720 57.895 25.72 12.09 43.21 4.16
1969 1991 2.636412 CCTCCTCGTCGTCCTTGCA 61.636 63.158 0.00 0.00 0.00 4.08
1976 1998 2.260088 CTCCTCCTCCTCCTCGTCGT 62.260 65.000 0.00 0.00 0.00 4.34
1977 1999 1.525077 CTCCTCCTCCTCCTCGTCG 60.525 68.421 0.00 0.00 0.00 5.12
1978 2000 1.152839 CCTCCTCCTCCTCCTCGTC 60.153 68.421 0.00 0.00 0.00 4.20
2066 2091 7.413657 CCGATGACATTTTGACGGTTAACTAAT 60.414 37.037 5.42 0.00 36.38 1.73
2078 2103 6.103330 TCTCGAATAACCGATGACATTTTGA 58.897 36.000 0.00 0.00 37.96 2.69
2109 2141 4.814294 CCGCCCGTGGTAGTGCTC 62.814 72.222 0.00 0.00 0.00 4.26
2121 2153 1.379309 TAATCAAACAGGGCCGCCC 60.379 57.895 22.09 22.09 45.90 6.13
2159 2191 8.250143 ACTAACACAAATTCTTGGGAAATTCT 57.750 30.769 0.00 0.00 38.31 2.40
2191 2226 6.675515 AAGCGAAAATTTCACGAGAATTTC 57.324 33.333 17.60 10.03 32.92 2.17
2280 2328 2.972625 ACACTCCGTATGATTGTGGTG 58.027 47.619 0.00 0.00 35.71 4.17
2299 2347 2.036089 TGCCCCCGAAATGTTTGTAAAC 59.964 45.455 0.65 0.65 39.33 2.01
2393 2451 5.006746 GCTTACGACTATTGATTTCAGTGGG 59.993 44.000 0.00 0.00 0.00 4.61
2467 2650 0.753262 GGTCGGTGCCTCATCAGTAT 59.247 55.000 0.00 0.00 0.00 2.12
2468 2651 1.663379 CGGTCGGTGCCTCATCAGTA 61.663 60.000 0.00 0.00 0.00 2.74
2469 2652 2.982130 GGTCGGTGCCTCATCAGT 59.018 61.111 0.00 0.00 0.00 3.41
2470 2653 2.202797 CGGTCGGTGCCTCATCAG 60.203 66.667 0.00 0.00 0.00 2.90
2471 2654 4.451150 GCGGTCGGTGCCTCATCA 62.451 66.667 0.00 0.00 0.00 3.07
2499 2682 7.487189 CGAAATCTGCAGCTTTATTTCTGATTT 59.513 33.333 24.64 15.30 37.73 2.17
2764 2957 3.643763 CTTTCTGCTGTTCACGTACTCT 58.356 45.455 0.00 0.00 0.00 3.24
2765 2958 2.155924 GCTTTCTGCTGTTCACGTACTC 59.844 50.000 0.00 0.00 38.95 2.59
2806 3002 3.551046 CGTCTCGCCTGCTAATCAATACT 60.551 47.826 0.00 0.00 0.00 2.12
2807 3003 2.726760 CGTCTCGCCTGCTAATCAATAC 59.273 50.000 0.00 0.00 0.00 1.89
2808 3004 2.621526 TCGTCTCGCCTGCTAATCAATA 59.378 45.455 0.00 0.00 0.00 1.90
2911 3115 3.124921 ATTCAAACTCGCCGCCCG 61.125 61.111 0.00 0.00 38.61 6.13
2968 3172 2.442830 GGAGGAAAGCATGGGGGC 60.443 66.667 0.00 0.00 0.00 5.80
3000 3204 4.712337 AGAATACTAGTACTGCCAGCACTT 59.288 41.667 2.29 0.00 0.00 3.16
3004 3208 4.920640 TCAGAATACTAGTACTGCCAGC 57.079 45.455 4.31 0.00 0.00 4.85
3026 3230 1.066573 CGCACTTTGAGATCCTGACCT 60.067 52.381 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.