Multiple sequence alignment - TraesCS4B01G115000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G115000 chr4B 100.000 2588 0 0 1 2588 131707179 131704592 0.000000e+00 4780.0
1 TraesCS4B01G115000 chr4B 97.710 131 1 1 220 350 82019250 82019122 9.320000e-55 224.0
2 TraesCS4B01G115000 chr4D 93.664 1957 87 17 566 2500 93439404 93437463 0.000000e+00 2892.0
3 TraesCS4B01G115000 chr4D 96.667 210 5 1 1 210 93450698 93450491 5.300000e-92 348.0
4 TraesCS4B01G115000 chr4D 93.452 168 11 0 404 571 93441873 93441706 1.540000e-62 250.0
5 TraesCS4B01G115000 chr4D 98.305 59 0 1 349 407 93447562 93447505 4.560000e-18 102.0
6 TraesCS4B01G115000 chr4D 85.526 76 9 1 2513 2586 474974161 474974086 7.680000e-11 78.7
7 TraesCS4B01G115000 chr4D 84.810 79 9 2 2511 2586 461524719 461524797 2.760000e-10 76.8
8 TraesCS4B01G115000 chr4D 93.878 49 3 0 1833 1881 485685067 485685019 9.930000e-10 75.0
9 TraesCS4B01G115000 chr4A 93.563 1507 72 12 349 1831 488535046 488536551 0.000000e+00 2222.0
10 TraesCS4B01G115000 chr4A 98.643 221 3 0 3 223 488534827 488535047 2.410000e-105 392.0
11 TraesCS4B01G115000 chr4A 85.526 76 9 1 2510 2583 441381800 441381875 7.680000e-11 78.7
12 TraesCS4B01G115000 chr4A 83.951 81 11 1 2508 2586 561158535 561158615 2.760000e-10 76.8
13 TraesCS4B01G115000 chr7B 96.324 136 3 2 215 350 89765771 89765904 3.350000e-54 222.0
14 TraesCS4B01G115000 chr7B 94.406 143 4 4 213 354 635489334 635489473 1.560000e-52 217.0
15 TraesCS4B01G115000 chr3B 96.296 135 3 1 218 352 40625391 40625523 1.210000e-53 220.0
16 TraesCS4B01G115000 chr3B 96.970 132 2 1 220 351 797463870 797463999 1.210000e-53 220.0
17 TraesCS4B01G115000 chr2D 95.683 139 3 2 213 350 445188584 445188720 1.210000e-53 220.0
18 TraesCS4B01G115000 chr2D 91.837 49 4 0 1833 1881 535756260 535756212 4.620000e-08 69.4
19 TraesCS4B01G115000 chr1B 95.620 137 4 1 214 350 623397570 623397436 4.340000e-53 219.0
20 TraesCS4B01G115000 chr1B 84.810 79 9 2 2511 2586 308377317 308377395 2.760000e-10 76.8
21 TraesCS4B01G115000 chr2B 93.878 147 4 4 207 352 597447 597589 1.560000e-52 217.0
22 TraesCS4B01G115000 chr2B 86.486 74 8 1 2516 2587 677341931 677342004 2.130000e-11 80.5
23 TraesCS4B01G115000 chr3D 93.750 144 7 2 215 358 7920984 7921125 5.610000e-52 215.0
24 TraesCS4B01G115000 chr3D 90.476 63 3 3 1833 1894 433435591 433435531 2.130000e-11 80.5
25 TraesCS4B01G115000 chr3D 84.615 78 10 1 2511 2586 50125897 50125974 2.760000e-10 76.8
26 TraesCS4B01G115000 chr2A 83.000 200 25 6 1885 2082 227838258 227838450 3.420000e-39 172.0
27 TraesCS4B01G115000 chr5A 77.778 297 37 17 1832 2101 409330588 409330294 3.450000e-34 156.0
28 TraesCS4B01G115000 chr5A 86.301 73 8 1 2513 2583 354560101 354560173 7.680000e-11 78.7
29 TraesCS4B01G115000 chrUn 86.792 106 10 2 2010 2115 86619060 86618959 5.850000e-22 115.0
30 TraesCS4B01G115000 chr7A 75.820 244 36 11 1889 2115 694908286 694908049 4.560000e-18 102.0
31 TraesCS4B01G115000 chr7A 83.019 106 14 2 2010 2115 694770587 694770486 2.740000e-15 93.5
32 TraesCS4B01G115000 chr7A 83.019 106 14 2 2010 2115 695047719 695047618 2.740000e-15 93.5
33 TraesCS4B01G115000 chr7A 86.250 80 8 3 2509 2586 720985371 720985449 1.650000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G115000 chr4B 131704592 131707179 2587 True 4780 4780 100.000 1 2588 1 chr4B.!!$R2 2587
1 TraesCS4B01G115000 chr4D 93437463 93441873 4410 True 1571 2892 93.558 404 2500 2 chr4D.!!$R3 2096
2 TraesCS4B01G115000 chr4D 93447505 93450698 3193 True 225 348 97.486 1 407 2 chr4D.!!$R4 406
3 TraesCS4B01G115000 chr4A 488534827 488536551 1724 False 1307 2222 96.103 3 1831 2 chr4A.!!$F3 1828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 3264 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2330 7600 0.036732 AGGAGCCTTGATTTCGCACA 59.963 50.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.758280 ACAAGTGTTCCGTGTACTCCA 59.242 47.619 0.00 0.00 33.77 3.86
225 3143 9.947433 TCCTTACAGTAGCTCTAGATTATACTC 57.053 37.037 0.00 0.00 0.00 2.59
226 3144 9.169592 CCTTACAGTAGCTCTAGATTATACTCC 57.830 40.741 0.00 0.00 0.00 3.85
227 3145 9.169592 CTTACAGTAGCTCTAGATTATACTCCC 57.830 40.741 0.00 0.00 0.00 4.30
228 3146 7.337826 ACAGTAGCTCTAGATTATACTCCCT 57.662 40.000 0.00 0.00 0.00 4.20
229 3147 7.399634 ACAGTAGCTCTAGATTATACTCCCTC 58.600 42.308 0.00 0.00 0.00 4.30
230 3148 6.826741 CAGTAGCTCTAGATTATACTCCCTCC 59.173 46.154 0.00 0.00 0.00 4.30
231 3149 4.850680 AGCTCTAGATTATACTCCCTCCG 58.149 47.826 0.00 0.00 0.00 4.63
232 3150 4.290196 AGCTCTAGATTATACTCCCTCCGT 59.710 45.833 0.00 0.00 0.00 4.69
233 3151 4.637091 GCTCTAGATTATACTCCCTCCGTC 59.363 50.000 0.00 0.00 0.00 4.79
234 3152 5.176741 TCTAGATTATACTCCCTCCGTCC 57.823 47.826 0.00 0.00 0.00 4.79
235 3153 2.792878 AGATTATACTCCCTCCGTCCG 58.207 52.381 0.00 0.00 0.00 4.79
236 3154 2.374504 AGATTATACTCCCTCCGTCCGA 59.625 50.000 0.00 0.00 0.00 4.55
237 3155 2.734755 TTATACTCCCTCCGTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
238 3156 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
239 3157 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
240 3158 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
241 3159 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
242 3160 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
243 3161 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
244 3162 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
245 3163 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
246 3164 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
247 3165 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
248 3166 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
249 3167 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
250 3168 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
251 3169 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
252 3170 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
253 3171 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
254 3172 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
255 3173 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
256 3174 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
257 3175 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
258 3176 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
259 3177 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
260 3178 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
261 3179 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
262 3180 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
263 3181 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
264 3182 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
307 3225 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
315 3233 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
321 3239 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
324 3242 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
325 3243 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
326 3244 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
327 3245 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
328 3246 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
329 3247 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
336 3254 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
337 3255 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
338 3256 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
339 3257 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
340 3258 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
341 3259 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
342 3260 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
343 3261 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
344 3262 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
345 3263 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
346 3264 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
347 3265 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
461 3379 3.259123 AGGACATCCTGCCAACATTTTTC 59.741 43.478 0.00 0.00 46.55 2.29
516 3434 3.532641 ATCCTTTTCCCAGTTCTTGCT 57.467 42.857 0.00 0.00 0.00 3.91
553 3471 2.281484 TGGAACTGCTGCGGAACC 60.281 61.111 16.72 16.81 0.00 3.62
705 5930 7.871853 TGGCACTCTTATCTTACAAAAGTTTC 58.128 34.615 0.00 0.00 34.13 2.78
707 5932 7.175119 GGCACTCTTATCTTACAAAAGTTTCCT 59.825 37.037 0.00 0.00 34.13 3.36
753 5978 8.758829 AGACAAGGTATCAGTCACAAACATATA 58.241 33.333 0.00 0.00 34.80 0.86
784 6009 2.860735 CCGATTTCTTGAGACGGATCAC 59.139 50.000 0.00 0.00 45.31 3.06
907 6132 5.393461 GCACTGCACTTCTTGGCTTATAAAT 60.393 40.000 0.00 0.00 0.00 1.40
1191 6416 4.168291 CCGCCAGCTCCTCCTTCC 62.168 72.222 0.00 0.00 0.00 3.46
1232 6460 2.893398 GTCTCCCTCGCCGTCATT 59.107 61.111 0.00 0.00 0.00 2.57
1237 6465 2.100631 CCCTCGCCGTCATTGTCAC 61.101 63.158 0.00 0.00 0.00 3.67
1651 6893 7.592533 TGAACTCTTCGTGTGTTTATAGTACAC 59.407 37.037 11.33 11.33 44.73 2.90
1822 7071 7.094549 TGCATACAGTACTGTTTATTTTGGTCC 60.095 37.037 32.15 9.35 41.83 4.46
1881 7130 1.838073 AATCCGACCCCTCAAACGCT 61.838 55.000 0.00 0.00 0.00 5.07
1912 7161 1.653151 GGACACTAACCGATCAAGCC 58.347 55.000 0.00 0.00 0.00 4.35
1913 7162 1.207329 GGACACTAACCGATCAAGCCT 59.793 52.381 0.00 0.00 0.00 4.58
1914 7163 2.541556 GACACTAACCGATCAAGCCTC 58.458 52.381 0.00 0.00 0.00 4.70
1915 7164 1.899814 ACACTAACCGATCAAGCCTCA 59.100 47.619 0.00 0.00 0.00 3.86
1916 7165 2.301870 ACACTAACCGATCAAGCCTCAA 59.698 45.455 0.00 0.00 0.00 3.02
1917 7166 3.244422 ACACTAACCGATCAAGCCTCAAA 60.244 43.478 0.00 0.00 0.00 2.69
1918 7167 3.751175 CACTAACCGATCAAGCCTCAAAA 59.249 43.478 0.00 0.00 0.00 2.44
1919 7168 3.751698 ACTAACCGATCAAGCCTCAAAAC 59.248 43.478 0.00 0.00 0.00 2.43
1920 7169 2.568623 ACCGATCAAGCCTCAAAACT 57.431 45.000 0.00 0.00 0.00 2.66
1921 7170 2.427506 ACCGATCAAGCCTCAAAACTC 58.572 47.619 0.00 0.00 0.00 3.01
1940 7189 3.997021 ACTCCAATCTCACAATCGAACAC 59.003 43.478 0.00 0.00 0.00 3.32
1963 7212 8.844244 ACACCTCAATTAGCATATCTCAAATTC 58.156 33.333 0.00 0.00 0.00 2.17
1994 7243 2.025544 TGCAACAACGTAAACGATGC 57.974 45.000 9.86 13.21 44.39 3.91
2000 7249 5.379003 CAACAACGTAAACGATGCTACATT 58.621 37.500 9.86 0.00 44.39 2.71
2003 7252 5.049954 ACAACGTAAACGATGCTACATTGTT 60.050 36.000 9.86 7.27 44.39 2.83
2005 7254 4.201551 ACGTAAACGATGCTACATTGTTCG 60.202 41.667 9.86 13.89 43.02 3.95
2019 7268 6.662414 ACATTGTTCGGATACTACAACATG 57.338 37.500 0.00 0.00 40.18 3.21
2042 7291 5.716228 TGCCATCAGACTACCAAAATTTGAT 59.284 36.000 7.37 0.00 0.00 2.57
2085 7334 4.534824 ATCCATGGCTGCCCCTGC 62.535 66.667 17.53 0.00 38.26 4.85
2121 7370 5.048364 CCCTGAATGTCCTTCTCGAGTATAG 60.048 48.000 13.13 8.46 34.75 1.31
2123 7372 6.432783 CCTGAATGTCCTTCTCGAGTATAGAT 59.567 42.308 13.13 0.00 34.75 1.98
2154 7403 0.035881 AGGGGATGCAGCATCATACG 59.964 55.000 31.89 0.00 42.13 3.06
2166 7415 1.526887 CATCATACGAACACGATGGCC 59.473 52.381 0.00 0.00 33.22 5.36
2167 7416 0.821517 TCATACGAACACGATGGCCT 59.178 50.000 3.32 0.00 0.00 5.19
2168 7417 0.930310 CATACGAACACGATGGCCTG 59.070 55.000 3.32 0.00 0.00 4.85
2169 7418 0.179084 ATACGAACACGATGGCCTGG 60.179 55.000 3.32 0.00 0.00 4.45
2170 7419 1.252215 TACGAACACGATGGCCTGGA 61.252 55.000 3.32 0.00 0.00 3.86
2171 7420 1.375396 CGAACACGATGGCCTGGAA 60.375 57.895 3.32 0.00 0.00 3.53
2243 7513 6.889301 AACATGCATAATGAATAGGGACAG 57.111 37.500 0.00 0.00 38.72 3.51
2297 7567 0.036952 AAGCCATGACCACACTCTCG 60.037 55.000 0.00 0.00 0.00 4.04
2334 7604 9.903682 ATGCTATCTTTATAAACATCATTGTGC 57.096 29.630 0.00 0.00 35.83 4.57
2348 7618 0.881118 TTGTGCGAAATCAAGGCTCC 59.119 50.000 0.00 0.00 0.00 4.70
2357 7627 5.631992 CGAAATCAAGGCTCCTCTAAAAAC 58.368 41.667 0.00 0.00 0.00 2.43
2358 7628 5.412904 CGAAATCAAGGCTCCTCTAAAAACT 59.587 40.000 0.00 0.00 0.00 2.66
2370 7640 4.279659 CTCTAAAAACTTTGTGGTGCGAC 58.720 43.478 0.00 0.00 0.00 5.19
2394 7664 7.768240 ACATTTCGTTAAAACTCCTTCAAACT 58.232 30.769 0.00 0.00 0.00 2.66
2401 7671 9.382244 CGTTAAAACTCCTTCAAACTCAATAAG 57.618 33.333 0.00 0.00 0.00 1.73
2500 7770 5.784177 AGAGGACAATAGTTATGCCGTATG 58.216 41.667 0.00 0.00 0.00 2.39
2501 7771 5.538813 AGAGGACAATAGTTATGCCGTATGA 59.461 40.000 0.00 0.00 0.00 2.15
2502 7772 5.784177 AGGACAATAGTTATGCCGTATGAG 58.216 41.667 0.00 0.00 0.00 2.90
2503 7773 4.929808 GGACAATAGTTATGCCGTATGAGG 59.070 45.833 0.00 0.00 0.00 3.86
2504 7774 4.894784 ACAATAGTTATGCCGTATGAGGG 58.105 43.478 0.00 0.00 0.00 4.30
2505 7775 4.591498 ACAATAGTTATGCCGTATGAGGGA 59.409 41.667 0.00 0.00 35.63 4.20
2506 7776 5.071250 ACAATAGTTATGCCGTATGAGGGAA 59.929 40.000 0.00 0.00 34.56 3.97
2507 7777 5.818678 ATAGTTATGCCGTATGAGGGAAA 57.181 39.130 0.00 0.00 34.56 3.13
2508 7778 3.805207 AGTTATGCCGTATGAGGGAAAC 58.195 45.455 0.00 0.00 34.56 2.78
2509 7779 3.454812 AGTTATGCCGTATGAGGGAAACT 59.545 43.478 0.00 0.00 34.56 2.66
2510 7780 4.652421 AGTTATGCCGTATGAGGGAAACTA 59.348 41.667 0.00 0.00 34.25 2.24
2511 7781 3.753294 ATGCCGTATGAGGGAAACTAG 57.247 47.619 0.00 0.00 34.56 2.57
2512 7782 2.742348 TGCCGTATGAGGGAAACTAGA 58.258 47.619 0.00 0.00 0.00 2.43
2513 7783 3.101437 TGCCGTATGAGGGAAACTAGAA 58.899 45.455 0.00 0.00 0.00 2.10
2514 7784 3.516300 TGCCGTATGAGGGAAACTAGAAA 59.484 43.478 0.00 0.00 0.00 2.52
2515 7785 4.020039 TGCCGTATGAGGGAAACTAGAAAA 60.020 41.667 0.00 0.00 0.00 2.29
2516 7786 5.123936 GCCGTATGAGGGAAACTAGAAAAT 58.876 41.667 0.00 0.00 0.00 1.82
2517 7787 6.126997 TGCCGTATGAGGGAAACTAGAAAATA 60.127 38.462 0.00 0.00 0.00 1.40
2518 7788 6.202379 GCCGTATGAGGGAAACTAGAAAATAC 59.798 42.308 0.00 0.00 0.00 1.89
2519 7789 7.498443 CCGTATGAGGGAAACTAGAAAATACT 58.502 38.462 0.00 0.00 0.00 2.12
2520 7790 7.652507 CCGTATGAGGGAAACTAGAAAATACTC 59.347 40.741 0.00 0.00 0.00 2.59
2521 7791 7.652507 CGTATGAGGGAAACTAGAAAATACTCC 59.347 40.741 0.00 0.00 0.00 3.85
2522 7792 6.309389 TGAGGGAAACTAGAAAATACTCCC 57.691 41.667 0.00 0.00 41.24 4.30
2524 7794 6.563037 AGGGAAACTAGAAAATACTCCCTC 57.437 41.667 0.00 0.00 46.90 4.30
2525 7795 5.429109 AGGGAAACTAGAAAATACTCCCTCC 59.571 44.000 0.00 0.00 46.90 4.30
2526 7796 5.358090 GGAAACTAGAAAATACTCCCTCCG 58.642 45.833 0.00 0.00 0.00 4.63
2527 7797 5.105023 GGAAACTAGAAAATACTCCCTCCGT 60.105 44.000 0.00 0.00 0.00 4.69
2528 7798 6.370186 AAACTAGAAAATACTCCCTCCGTT 57.630 37.500 0.00 0.00 0.00 4.44
2529 7799 5.595257 ACTAGAAAATACTCCCTCCGTTC 57.405 43.478 0.00 0.00 0.00 3.95
2530 7800 3.908643 AGAAAATACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
2531 7801 3.451890 AGAAAATACTCCCTCCGTTCCT 58.548 45.455 0.00 0.00 0.00 3.36
2532 7802 3.844804 AGAAAATACTCCCTCCGTTCCTT 59.155 43.478 0.00 0.00 0.00 3.36
2533 7803 4.288887 AGAAAATACTCCCTCCGTTCCTTT 59.711 41.667 0.00 0.00 0.00 3.11
2534 7804 5.486419 AGAAAATACTCCCTCCGTTCCTTTA 59.514 40.000 0.00 0.00 0.00 1.85
2535 7805 5.970501 AAATACTCCCTCCGTTCCTTTAT 57.029 39.130 0.00 0.00 0.00 1.40
2536 7806 7.346436 AGAAAATACTCCCTCCGTTCCTTTATA 59.654 37.037 0.00 0.00 0.00 0.98
2537 7807 7.628501 AAATACTCCCTCCGTTCCTTTATAT 57.371 36.000 0.00 0.00 0.00 0.86
2538 7808 8.731591 AAATACTCCCTCCGTTCCTTTATATA 57.268 34.615 0.00 0.00 0.00 0.86
2539 7809 8.731591 AATACTCCCTCCGTTCCTTTATATAA 57.268 34.615 0.00 0.00 0.00 0.98
2540 7810 6.667558 ACTCCCTCCGTTCCTTTATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2541 7811 5.543020 ACTCCCTCCGTTCCTTTATATAAGG 59.457 44.000 0.00 0.00 38.78 2.69
2542 7812 5.470501 TCCCTCCGTTCCTTTATATAAGGT 58.529 41.667 4.13 0.00 38.55 3.50
2543 7813 5.541484 TCCCTCCGTTCCTTTATATAAGGTC 59.459 44.000 4.13 7.19 38.55 3.85
2544 7814 5.543020 CCCTCCGTTCCTTTATATAAGGTCT 59.457 44.000 4.13 0.00 38.55 3.85
2545 7815 6.723052 CCCTCCGTTCCTTTATATAAGGTCTA 59.277 42.308 4.13 0.00 38.55 2.59
2546 7816 7.399478 CCCTCCGTTCCTTTATATAAGGTCTAT 59.601 40.741 4.13 0.00 38.55 1.98
2547 7817 8.251721 CCTCCGTTCCTTTATATAAGGTCTATG 58.748 40.741 4.13 6.27 38.55 2.23
2548 7818 8.716674 TCCGTTCCTTTATATAAGGTCTATGT 57.283 34.615 4.13 0.00 38.55 2.29
2549 7819 9.151177 TCCGTTCCTTTATATAAGGTCTATGTT 57.849 33.333 4.13 0.00 38.55 2.71
2550 7820 9.774413 CCGTTCCTTTATATAAGGTCTATGTTT 57.226 33.333 4.13 0.00 38.55 2.83
2554 7824 9.976511 TCCTTTATATAAGGTCTATGTTTGTCG 57.023 33.333 4.13 0.00 38.55 4.35
2555 7825 9.976511 CCTTTATATAAGGTCTATGTTTGTCGA 57.023 33.333 4.13 0.00 32.78 4.20
2580 7850 4.640789 TTTTTCACAATGTAAGGTGCGT 57.359 36.364 0.00 0.00 35.04 5.24
2581 7851 4.640789 TTTTCACAATGTAAGGTGCGTT 57.359 36.364 0.00 0.00 35.04 4.84
2582 7852 4.640789 TTTCACAATGTAAGGTGCGTTT 57.359 36.364 0.00 0.00 35.04 3.60
2583 7853 3.889196 TCACAATGTAAGGTGCGTTTC 57.111 42.857 0.00 0.00 35.04 2.78
2584 7854 3.472652 TCACAATGTAAGGTGCGTTTCT 58.527 40.909 0.00 0.00 35.04 2.52
2585 7855 3.880490 TCACAATGTAAGGTGCGTTTCTT 59.120 39.130 0.00 0.00 35.04 2.52
2586 7856 4.336993 TCACAATGTAAGGTGCGTTTCTTT 59.663 37.500 0.00 0.00 35.04 2.52
2587 7857 4.675114 CACAATGTAAGGTGCGTTTCTTTC 59.325 41.667 0.00 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 5.242838 ACCATGTCAATAAACAACCGACAAT 59.757 36.000 0.00 0.00 39.80 2.71
221 3139 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
222 3140 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
223 3141 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
224 3142 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
225 3143 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
226 3144 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
227 3145 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
228 3146 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
229 3147 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
230 3148 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
231 3149 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
232 3150 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
233 3151 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
234 3152 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
235 3153 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
236 3154 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
237 3155 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
238 3156 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
281 3199 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
289 3207 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
295 3213 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
298 3216 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
299 3217 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
300 3218 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
301 3219 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
302 3220 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
303 3221 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
311 3229 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
312 3230 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
313 3231 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
314 3232 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
315 3233 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
316 3234 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
317 3235 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
318 3236 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
319 3237 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
320 3238 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
321 3239 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
322 3240 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
323 3241 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
324 3242 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
325 3243 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
326 3244 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
327 3245 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
328 3246 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
329 3247 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
330 3248 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
331 3249 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
332 3250 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
333 3251 2.262774 GACTACTCCCTCCGTCCGGA 62.263 65.000 0.00 0.00 42.90 5.14
334 3252 1.823041 GACTACTCCCTCCGTCCGG 60.823 68.421 0.00 0.00 0.00 5.14
335 3253 1.077930 TGACTACTCCCTCCGTCCG 60.078 63.158 0.00 0.00 0.00 4.79
336 3254 0.034283 ACTGACTACTCCCTCCGTCC 60.034 60.000 0.00 0.00 0.00 4.79
337 3255 2.706339 TACTGACTACTCCCTCCGTC 57.294 55.000 0.00 0.00 0.00 4.79
338 3256 2.944991 GCTTACTGACTACTCCCTCCGT 60.945 54.545 0.00 0.00 0.00 4.69
339 3257 1.677052 GCTTACTGACTACTCCCTCCG 59.323 57.143 0.00 0.00 0.00 4.63
340 3258 2.033372 GGCTTACTGACTACTCCCTCC 58.967 57.143 0.00 0.00 0.00 4.30
341 3259 3.021177 AGGCTTACTGACTACTCCCTC 57.979 52.381 0.00 0.00 27.54 4.30
342 3260 3.100671 CAAGGCTTACTGACTACTCCCT 58.899 50.000 0.00 0.00 30.64 4.20
343 3261 2.418884 GCAAGGCTTACTGACTACTCCC 60.419 54.545 0.00 0.00 30.64 4.30
344 3262 2.498078 AGCAAGGCTTACTGACTACTCC 59.502 50.000 0.00 0.00 33.89 3.85
345 3263 3.878160 AGCAAGGCTTACTGACTACTC 57.122 47.619 0.00 0.00 33.89 2.59
461 3379 3.160679 ACAGGGGTTTGAGATGAAAGG 57.839 47.619 0.00 0.00 0.00 3.11
553 3471 6.291377 TGCTACTCTATTATGGCCTCAAAAG 58.709 40.000 3.32 0.00 0.00 2.27
645 5870 4.397420 TGAGAAGTGCATGTGTAATGGTT 58.603 39.130 0.00 0.00 0.00 3.67
682 5907 8.100508 AGGAAACTTTTGTAAGATAAGAGTGC 57.899 34.615 0.00 0.00 37.44 4.40
688 5913 9.569122 AAGTGCTAGGAAACTTTTGTAAGATAA 57.431 29.630 0.00 0.00 43.67 1.75
705 5930 2.479566 TGGAGCTCAAAAGTGCTAGG 57.520 50.000 17.19 0.00 39.91 3.02
707 5932 3.261643 TCTCATGGAGCTCAAAAGTGCTA 59.738 43.478 17.19 0.00 39.91 3.49
709 5934 2.161211 GTCTCATGGAGCTCAAAAGTGC 59.839 50.000 17.19 0.00 0.00 4.40
784 6009 1.001181 CCTGGATTGGCACCAAACAAG 59.999 52.381 6.14 6.65 39.55 3.16
1188 6413 1.317431 ACGATGACGATGACGGGGAA 61.317 55.000 0.00 0.00 44.46 3.97
1191 6416 0.179148 TTGACGATGACGATGACGGG 60.179 55.000 0.00 0.00 44.46 5.28
1232 6460 1.227031 GACGGTGTTGACGGTGACA 60.227 57.895 0.00 0.00 35.88 3.58
1237 6465 4.657824 AGGCGACGGTGTTGACGG 62.658 66.667 0.00 0.00 35.23 4.79
1296 6524 0.390860 GCAGAGTCAGATATGGCGGT 59.609 55.000 0.00 0.00 0.00 5.68
1302 6530 1.969923 GGGAGCAGCAGAGTCAGATAT 59.030 52.381 0.00 0.00 0.00 1.63
1401 6629 0.037877 AGGGAGAGGAAGACGACGAA 59.962 55.000 0.00 0.00 0.00 3.85
1404 6632 1.378124 CCGAGGGAGAGGAAGACGAC 61.378 65.000 0.00 0.00 0.00 4.34
1651 6893 4.625607 AAGGGAAAGGAAGTGACAGTAG 57.374 45.455 0.00 0.00 0.00 2.57
1822 7071 8.861086 TGTAGATGCTCTAAAGGGACTAATTAG 58.139 37.037 11.05 11.05 38.49 1.73
1838 7087 0.461961 AAGTCCGGCTGTAGATGCTC 59.538 55.000 0.00 0.00 0.00 4.26
1890 7139 0.457166 TTGATCGGTTAGTGTCCGCG 60.457 55.000 0.00 0.00 46.49 6.46
1900 7149 2.814336 GAGTTTTGAGGCTTGATCGGTT 59.186 45.455 0.00 0.00 0.00 4.44
1904 7153 4.704057 AGATTGGAGTTTTGAGGCTTGATC 59.296 41.667 0.00 0.00 0.00 2.92
1906 7155 4.074970 GAGATTGGAGTTTTGAGGCTTGA 58.925 43.478 0.00 0.00 0.00 3.02
1907 7156 3.822735 TGAGATTGGAGTTTTGAGGCTTG 59.177 43.478 0.00 0.00 0.00 4.01
1908 7157 3.823304 GTGAGATTGGAGTTTTGAGGCTT 59.177 43.478 0.00 0.00 0.00 4.35
1909 7158 3.181440 TGTGAGATTGGAGTTTTGAGGCT 60.181 43.478 0.00 0.00 0.00 4.58
1910 7159 3.149196 TGTGAGATTGGAGTTTTGAGGC 58.851 45.455 0.00 0.00 0.00 4.70
1911 7160 5.391310 CGATTGTGAGATTGGAGTTTTGAGG 60.391 44.000 0.00 0.00 0.00 3.86
1912 7161 5.409520 TCGATTGTGAGATTGGAGTTTTGAG 59.590 40.000 0.00 0.00 0.00 3.02
1913 7162 5.304778 TCGATTGTGAGATTGGAGTTTTGA 58.695 37.500 0.00 0.00 0.00 2.69
1914 7163 5.611796 TCGATTGTGAGATTGGAGTTTTG 57.388 39.130 0.00 0.00 0.00 2.44
1915 7164 5.530915 TGTTCGATTGTGAGATTGGAGTTTT 59.469 36.000 0.00 0.00 0.00 2.43
1916 7165 5.049405 GTGTTCGATTGTGAGATTGGAGTTT 60.049 40.000 0.00 0.00 0.00 2.66
1917 7166 4.452455 GTGTTCGATTGTGAGATTGGAGTT 59.548 41.667 0.00 0.00 0.00 3.01
1918 7167 3.997021 GTGTTCGATTGTGAGATTGGAGT 59.003 43.478 0.00 0.00 0.00 3.85
1919 7168 3.372206 GGTGTTCGATTGTGAGATTGGAG 59.628 47.826 0.00 0.00 0.00 3.86
1920 7169 3.007940 AGGTGTTCGATTGTGAGATTGGA 59.992 43.478 0.00 0.00 0.00 3.53
1921 7170 3.338249 AGGTGTTCGATTGTGAGATTGG 58.662 45.455 0.00 0.00 0.00 3.16
1963 7212 3.049206 CGTTGTTGCATGGGTTTGTAAG 58.951 45.455 0.00 0.00 0.00 2.34
1972 7221 2.672188 TCGTTTACGTTGTTGCATGG 57.328 45.000 0.00 0.00 40.80 3.66
1994 7243 7.516785 GCATGTTGTAGTATCCGAACAATGTAG 60.517 40.741 0.00 0.00 35.72 2.74
2000 7249 3.055747 TGGCATGTTGTAGTATCCGAACA 60.056 43.478 0.00 0.00 33.09 3.18
2003 7252 3.386402 TGATGGCATGTTGTAGTATCCGA 59.614 43.478 3.81 0.00 0.00 4.55
2005 7254 4.752101 GTCTGATGGCATGTTGTAGTATCC 59.248 45.833 3.81 0.00 0.00 2.59
2019 7268 5.643379 TCAAATTTTGGTAGTCTGATGGC 57.357 39.130 9.18 0.00 0.00 4.40
2042 7291 9.904198 TGATTTTCTCCATCATAGTCAAACATA 57.096 29.630 0.00 0.00 0.00 2.29
2049 7298 7.120873 CCATGGATGATTTTCTCCATCATAGTC 59.879 40.741 5.56 0.00 46.95 2.59
2050 7299 6.946583 CCATGGATGATTTTCTCCATCATAGT 59.053 38.462 5.56 0.00 46.95 2.12
2053 7302 4.527038 GCCATGGATGATTTTCTCCATCAT 59.473 41.667 18.40 0.00 46.95 2.45
2059 7308 2.035576 GGCAGCCATGGATGATTTTCTC 59.964 50.000 33.58 13.27 32.62 2.87
2103 7352 7.773224 CCTATCATCTATACTCGAGAAGGACAT 59.227 40.741 21.68 9.33 0.00 3.06
2121 7370 3.623453 GCATCCCCTTTAGGCCTATCATC 60.623 52.174 14.74 0.00 0.00 2.92
2123 7372 1.705186 GCATCCCCTTTAGGCCTATCA 59.295 52.381 14.74 2.38 0.00 2.15
2154 7403 0.321653 AGTTCCAGGCCATCGTGTTC 60.322 55.000 5.01 0.00 0.00 3.18
2166 7415 2.289694 ACTCGGTTCATTCCAGTTCCAG 60.290 50.000 0.00 0.00 0.00 3.86
2167 7416 1.697432 ACTCGGTTCATTCCAGTTCCA 59.303 47.619 0.00 0.00 0.00 3.53
2168 7417 2.076863 CACTCGGTTCATTCCAGTTCC 58.923 52.381 0.00 0.00 0.00 3.62
2169 7418 3.040147 TCACTCGGTTCATTCCAGTTC 57.960 47.619 0.00 0.00 0.00 3.01
2170 7419 3.485463 TTCACTCGGTTCATTCCAGTT 57.515 42.857 0.00 0.00 0.00 3.16
2171 7420 3.600388 GATTCACTCGGTTCATTCCAGT 58.400 45.455 0.00 0.00 0.00 4.00
2221 7491 5.319453 CCTGTCCCTATTCATTATGCATGT 58.681 41.667 10.16 0.00 34.06 3.21
2223 7493 4.264083 CCCCTGTCCCTATTCATTATGCAT 60.264 45.833 3.79 3.79 0.00 3.96
2281 7551 1.448540 GGCGAGAGTGTGGTCATGG 60.449 63.158 0.00 0.00 0.00 3.66
2283 7553 2.660064 GGGGCGAGAGTGTGGTCAT 61.660 63.158 0.00 0.00 0.00 3.06
2297 7567 6.800072 ATAAAGATAGCATAGACTAGGGGC 57.200 41.667 0.00 0.00 0.00 5.80
2330 7600 0.036732 AGGAGCCTTGATTTCGCACA 59.963 50.000 0.00 0.00 0.00 4.57
2331 7601 0.729690 GAGGAGCCTTGATTTCGCAC 59.270 55.000 0.00 0.00 0.00 5.34
2334 7604 5.412904 AGTTTTTAGAGGAGCCTTGATTTCG 59.587 40.000 0.00 0.00 0.00 3.46
2348 7618 4.201871 TGTCGCACCACAAAGTTTTTAGAG 60.202 41.667 0.00 0.00 0.00 2.43
2357 7627 1.673760 CGAAATGTCGCACCACAAAG 58.326 50.000 0.00 0.00 41.08 2.77
2358 7628 3.835686 CGAAATGTCGCACCACAAA 57.164 47.368 0.00 0.00 41.08 2.83
2370 7640 7.913297 TGAGTTTGAAGGAGTTTTAACGAAATG 59.087 33.333 0.00 0.00 0.00 2.32
2453 7723 8.998814 TCTAAACTCCATGGGTTTCTCATATTA 58.001 33.333 25.40 11.50 37.88 0.98
2470 7740 6.706716 GGCATAACTATTGTCCTCTAAACTCC 59.293 42.308 0.00 0.00 0.00 3.85
2502 7772 5.682659 GGAGGGAGTATTTTCTAGTTTCCC 58.317 45.833 0.00 0.00 42.49 3.97
2503 7773 5.105023 ACGGAGGGAGTATTTTCTAGTTTCC 60.105 44.000 0.00 0.00 0.00 3.13
2504 7774 5.975282 ACGGAGGGAGTATTTTCTAGTTTC 58.025 41.667 0.00 0.00 0.00 2.78
2505 7775 6.370186 AACGGAGGGAGTATTTTCTAGTTT 57.630 37.500 0.00 0.00 0.00 2.66
2506 7776 5.105023 GGAACGGAGGGAGTATTTTCTAGTT 60.105 44.000 0.00 0.00 0.00 2.24
2507 7777 4.405036 GGAACGGAGGGAGTATTTTCTAGT 59.595 45.833 0.00 0.00 0.00 2.57
2508 7778 4.650131 AGGAACGGAGGGAGTATTTTCTAG 59.350 45.833 0.00 0.00 0.00 2.43
2509 7779 4.617593 AGGAACGGAGGGAGTATTTTCTA 58.382 43.478 0.00 0.00 0.00 2.10
2510 7780 3.451890 AGGAACGGAGGGAGTATTTTCT 58.548 45.455 0.00 0.00 0.00 2.52
2511 7781 3.908643 AGGAACGGAGGGAGTATTTTC 57.091 47.619 0.00 0.00 0.00 2.29
2512 7782 4.652679 AAAGGAACGGAGGGAGTATTTT 57.347 40.909 0.00 0.00 0.00 1.82
2513 7783 5.970501 ATAAAGGAACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
2514 7784 8.731591 TTATATAAAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
2515 7785 7.399478 CCTTATATAAAGGAACGGAGGGAGTAT 59.601 40.741 0.00 0.00 39.81 2.12
2516 7786 6.723052 CCTTATATAAAGGAACGGAGGGAGTA 59.277 42.308 0.00 0.00 39.81 2.59
2517 7787 5.543020 CCTTATATAAAGGAACGGAGGGAGT 59.457 44.000 0.00 0.00 39.81 3.85
2518 7788 5.543020 ACCTTATATAAAGGAACGGAGGGAG 59.457 44.000 10.67 0.00 39.81 4.30
2519 7789 5.470501 ACCTTATATAAAGGAACGGAGGGA 58.529 41.667 10.67 0.00 39.81 4.20
2520 7790 5.543020 AGACCTTATATAAAGGAACGGAGGG 59.457 44.000 10.67 4.11 39.81 4.30
2521 7791 6.667558 AGACCTTATATAAAGGAACGGAGG 57.332 41.667 10.67 4.52 39.81 4.30
2522 7792 8.804204 ACATAGACCTTATATAAAGGAACGGAG 58.196 37.037 10.67 0.00 39.81 4.63
2523 7793 8.716674 ACATAGACCTTATATAAAGGAACGGA 57.283 34.615 10.67 0.34 39.81 4.69
2524 7794 9.774413 AAACATAGACCTTATATAAAGGAACGG 57.226 33.333 10.67 6.38 39.81 4.44
2528 7798 9.976511 CGACAAACATAGACCTTATATAAAGGA 57.023 33.333 10.67 0.00 39.81 3.36
2529 7799 9.976511 TCGACAAACATAGACCTTATATAAAGG 57.023 33.333 2.23 2.23 43.05 3.11
2559 7829 4.640789 ACGCACCTTACATTGTGAAAAA 57.359 36.364 0.00 0.00 34.37 1.94
2560 7830 4.640789 AACGCACCTTACATTGTGAAAA 57.359 36.364 0.00 0.00 34.37 2.29
2561 7831 4.336993 AGAAACGCACCTTACATTGTGAAA 59.663 37.500 0.00 0.00 34.37 2.69
2562 7832 3.880490 AGAAACGCACCTTACATTGTGAA 59.120 39.130 0.00 0.00 34.37 3.18
2563 7833 3.472652 AGAAACGCACCTTACATTGTGA 58.527 40.909 0.00 0.00 34.37 3.58
2564 7834 3.896648 AGAAACGCACCTTACATTGTG 57.103 42.857 0.00 0.00 35.58 3.33
2565 7835 4.855531 GAAAGAAACGCACCTTACATTGT 58.144 39.130 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.