Multiple sequence alignment - TraesCS4B01G114800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G114800 chr4B 100.000 6783 0 0 1 6783 130633833 130627051 0.000000e+00 12526.0
1 TraesCS4B01G114800 chr4B 88.995 209 21 2 109 317 149734537 149734743 2.430000e-64 257.0
2 TraesCS4B01G114800 chr4A 95.135 6084 200 34 371 6392 489425738 489431787 0.000000e+00 9507.0
3 TraesCS4B01G114800 chr4A 87.421 318 34 4 6 321 38336272 38336585 1.800000e-95 361.0
4 TraesCS4B01G114800 chr4A 93.564 202 10 3 6583 6783 489431928 489432127 1.430000e-76 298.0
5 TraesCS4B01G114800 chr4A 97.143 35 0 1 316 350 489425706 489425739 2.640000e-04 58.4
6 TraesCS4B01G114800 chr4D 96.743 3531 79 9 2890 6392 93079207 93075685 0.000000e+00 5851.0
7 TraesCS4B01G114800 chr4D 92.933 2646 90 40 316 2894 93081981 93079366 0.000000e+00 3760.0
8 TraesCS4B01G114800 chr4D 93.720 207 9 4 6578 6783 93072000 93071797 2.380000e-79 307.0
9 TraesCS4B01G114800 chr4D 97.452 157 4 0 6408 6564 93075701 93075545 1.120000e-67 268.0
10 TraesCS4B01G114800 chr1B 94.131 903 51 2 1291 2193 663287751 663286851 0.000000e+00 1373.0
11 TraesCS4B01G114800 chr2A 90.159 315 27 3 6 318 351184983 351185295 2.280000e-109 407.0
12 TraesCS4B01G114800 chr2A 91.266 229 11 5 101 323 775531705 775531480 3.070000e-78 303.0
13 TraesCS4B01G114800 chr6A 88.851 296 27 4 6 297 562263154 562263447 6.470000e-95 359.0
14 TraesCS4B01G114800 chr3A 86.709 316 32 5 6 317 362810046 362810355 6.510000e-90 342.0
15 TraesCS4B01G114800 chr6B 85.443 316 32 7 6 317 623723969 623724274 3.950000e-82 316.0
16 TraesCS4B01G114800 chr6B 86.268 284 27 6 35 315 695790599 695790325 1.430000e-76 298.0
17 TraesCS4B01G114800 chr5B 88.038 209 22 2 109 317 565493594 565493389 1.890000e-60 244.0
18 TraesCS4B01G114800 chr5B 89.474 114 10 2 995 1106 225542203 225542090 7.090000e-30 143.0
19 TraesCS4B01G114800 chr5A 89.474 114 10 2 995 1106 275109119 275109006 7.090000e-30 143.0
20 TraesCS4B01G114800 chr5D 89.908 109 9 2 1000 1106 212005141 212005033 9.170000e-29 139.0
21 TraesCS4B01G114800 chr2B 96.875 32 1 0 6473 6504 6045534 6045565 3.000000e-03 54.7
22 TraesCS4B01G114800 chr2B 96.875 32 1 0 6473 6504 6055293 6055324 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G114800 chr4B 130627051 130633833 6782 True 12526.0 12526 100.000000 1 6783 1 chr4B.!!$R1 6782
1 TraesCS4B01G114800 chr4A 489425706 489432127 6421 False 3287.8 9507 95.280667 316 6783 3 chr4A.!!$F2 6467
2 TraesCS4B01G114800 chr4D 93071797 93081981 10184 True 2546.5 5851 95.212000 316 6783 4 chr4D.!!$R1 6467
3 TraesCS4B01G114800 chr1B 663286851 663287751 900 True 1373.0 1373 94.131000 1291 2193 1 chr1B.!!$R1 902

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.037734 CCGGGAAAACTAGCCCAACT 59.962 55.000 0.0 0.00 44.94 3.16 F
191 192 0.108615 CAACTAGCACCTCTCCACCG 60.109 60.000 0.0 0.00 0.00 4.94 F
1131 1225 0.179089 CCTCCTCCACTTGCATCTCG 60.179 60.000 0.0 0.00 0.00 4.04 F
1739 1841 0.177836 GGGTTTGTTTGCTGGTTGCT 59.822 50.000 0.0 0.00 43.37 3.91 F
3088 3366 1.210478 ACCAGCGATCAAGTATGGCTT 59.790 47.619 0.0 0.00 46.39 4.35 F
3861 4139 0.458669 GCTTGAATGGCATGTCCCAG 59.541 55.000 0.0 1.98 38.50 4.45 F
4000 4278 1.065926 CAGCTATGCCCAGTGAGACAA 60.066 52.381 0.0 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1099 1193 0.539518 GAGGAGGAAACAGAGGAGGC 59.460 60.000 0.00 0.0 0.00 4.70 R
1180 1279 0.865769 GGTGTCAAACTAGCACACGG 59.134 55.000 8.12 0.0 41.21 4.94 R
2068 2173 1.861982 ACAGCTACCGTATCCCTGTT 58.138 50.000 0.00 0.0 33.29 3.16 R
3395 3673 0.804989 CAAGCTCGATGGGACCAAAC 59.195 55.000 0.00 0.0 0.00 2.93 R
4140 4418 1.200020 CAAATCGAGGGTTCAGTTGCC 59.800 52.381 0.00 0.0 0.00 4.52 R
5200 5478 0.671472 CGACAGCAGCATCCTGAACA 60.671 55.000 0.00 0.0 41.77 3.18 R
5982 6288 1.136336 CACGTTAAGACTTTCTGCGGC 60.136 52.381 0.00 0.0 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 4.796231 CGCGGTGGGGAACGAGAG 62.796 72.222 0.00 0.00 31.48 3.20
57 58 4.452733 GCGGTGGGGAACGAGAGG 62.453 72.222 0.00 0.00 0.00 3.69
58 59 4.452733 CGGTGGGGAACGAGAGGC 62.453 72.222 0.00 0.00 0.00 4.70
83 84 4.880426 GAGGGGATGCGGGAGGGA 62.880 72.222 0.00 0.00 0.00 4.20
84 85 4.888325 AGGGGATGCGGGAGGGAG 62.888 72.222 0.00 0.00 0.00 4.30
88 89 4.292178 GATGCGGGAGGGAGCGAG 62.292 72.222 0.00 0.00 35.87 5.03
92 93 4.924187 CGGGAGGGAGCGAGGGAT 62.924 72.222 0.00 0.00 0.00 3.85
93 94 2.920384 GGGAGGGAGCGAGGGATC 60.920 72.222 0.00 0.00 0.00 3.36
94 95 2.200092 GGAGGGAGCGAGGGATCT 59.800 66.667 0.00 0.00 0.00 2.75
95 96 2.206536 GGAGGGAGCGAGGGATCTG 61.207 68.421 0.00 0.00 0.00 2.90
96 97 2.123077 AGGGAGCGAGGGATCTGG 60.123 66.667 0.00 0.00 0.00 3.86
97 98 2.444895 GGGAGCGAGGGATCTGGT 60.445 66.667 0.00 0.00 0.00 4.00
98 99 2.801631 GGGAGCGAGGGATCTGGTG 61.802 68.421 0.00 0.00 0.00 4.17
99 100 2.107953 GAGCGAGGGATCTGGTGC 59.892 66.667 0.00 0.00 0.00 5.01
100 101 3.781770 GAGCGAGGGATCTGGTGCG 62.782 68.421 0.00 0.00 0.00 5.34
101 102 4.899239 GCGAGGGATCTGGTGCGG 62.899 72.222 0.00 0.00 0.00 5.69
102 103 4.227134 CGAGGGATCTGGTGCGGG 62.227 72.222 0.00 0.00 0.00 6.13
103 104 2.764128 GAGGGATCTGGTGCGGGA 60.764 66.667 0.00 0.00 0.00 5.14
104 105 3.083997 AGGGATCTGGTGCGGGAC 61.084 66.667 0.00 0.00 0.00 4.46
117 118 4.051932 GGGACGAAGGGATCTGGT 57.948 61.111 0.00 0.00 0.00 4.00
118 119 1.522569 GGGACGAAGGGATCTGGTG 59.477 63.158 0.00 0.00 0.00 4.17
119 120 1.265454 GGGACGAAGGGATCTGGTGT 61.265 60.000 0.00 0.00 0.00 4.16
120 121 0.108138 GGACGAAGGGATCTGGTGTG 60.108 60.000 0.00 0.00 0.00 3.82
121 122 0.108138 GACGAAGGGATCTGGTGTGG 60.108 60.000 0.00 0.00 0.00 4.17
122 123 1.221840 CGAAGGGATCTGGTGTGGG 59.778 63.158 0.00 0.00 0.00 4.61
123 124 1.264749 CGAAGGGATCTGGTGTGGGA 61.265 60.000 0.00 0.00 0.00 4.37
124 125 0.543749 GAAGGGATCTGGTGTGGGAG 59.456 60.000 0.00 0.00 0.00 4.30
125 126 0.916358 AAGGGATCTGGTGTGGGAGG 60.916 60.000 0.00 0.00 0.00 4.30
126 127 2.378634 GGGATCTGGTGTGGGAGGG 61.379 68.421 0.00 0.00 0.00 4.30
127 128 1.616628 GGATCTGGTGTGGGAGGGT 60.617 63.158 0.00 0.00 0.00 4.34
128 129 1.604378 GATCTGGTGTGGGAGGGTG 59.396 63.158 0.00 0.00 0.00 4.61
129 130 0.909610 GATCTGGTGTGGGAGGGTGA 60.910 60.000 0.00 0.00 0.00 4.02
130 131 0.253347 ATCTGGTGTGGGAGGGTGAT 60.253 55.000 0.00 0.00 0.00 3.06
131 132 0.475632 TCTGGTGTGGGAGGGTGATT 60.476 55.000 0.00 0.00 0.00 2.57
132 133 0.405585 CTGGTGTGGGAGGGTGATTT 59.594 55.000 0.00 0.00 0.00 2.17
133 134 0.856982 TGGTGTGGGAGGGTGATTTT 59.143 50.000 0.00 0.00 0.00 1.82
134 135 1.219213 TGGTGTGGGAGGGTGATTTTT 59.781 47.619 0.00 0.00 0.00 1.94
157 158 5.731957 TTAGTTATTCTTTTTGTGGGCCC 57.268 39.130 17.59 17.59 0.00 5.80
158 159 2.903784 AGTTATTCTTTTTGTGGGCCCC 59.096 45.455 22.27 11.72 0.00 5.80
159 160 1.551452 TATTCTTTTTGTGGGCCCCG 58.449 50.000 22.27 0.00 0.00 5.73
160 161 1.191489 ATTCTTTTTGTGGGCCCCGG 61.191 55.000 22.27 0.00 0.00 5.73
161 162 3.310307 CTTTTTGTGGGCCCCGGG 61.310 66.667 22.27 15.80 0.00 5.73
162 163 3.819016 CTTTTTGTGGGCCCCGGGA 62.819 63.158 26.32 0.00 0.00 5.14
163 164 3.390671 TTTTTGTGGGCCCCGGGAA 62.391 57.895 26.32 3.36 0.00 3.97
164 165 2.891307 TTTTTGTGGGCCCCGGGAAA 62.891 55.000 26.32 10.79 0.00 3.13
165 166 2.891307 TTTTGTGGGCCCCGGGAAAA 62.891 55.000 26.32 16.78 0.00 2.29
166 167 4.607025 TGTGGGCCCCGGGAAAAC 62.607 66.667 26.32 15.15 0.00 2.43
167 168 4.295199 GTGGGCCCCGGGAAAACT 62.295 66.667 26.32 0.00 0.00 2.66
168 169 2.532199 TGGGCCCCGGGAAAACTA 60.532 61.111 26.32 3.57 0.00 2.24
169 170 2.274432 GGGCCCCGGGAAAACTAG 59.726 66.667 26.32 3.67 0.00 2.57
170 171 2.439701 GGCCCCGGGAAAACTAGC 60.440 66.667 26.32 15.27 0.00 3.42
171 172 2.439701 GCCCCGGGAAAACTAGCC 60.440 66.667 26.32 0.00 0.00 3.93
172 173 2.274432 CCCCGGGAAAACTAGCCC 59.726 66.667 26.32 0.00 41.11 5.19
173 174 2.608550 CCCCGGGAAAACTAGCCCA 61.609 63.158 26.32 0.00 44.94 5.36
174 175 1.381076 CCCGGGAAAACTAGCCCAA 59.619 57.895 18.48 0.00 44.94 4.12
175 176 0.963856 CCCGGGAAAACTAGCCCAAC 60.964 60.000 18.48 0.00 44.94 3.77
176 177 0.037734 CCGGGAAAACTAGCCCAACT 59.962 55.000 0.00 0.00 44.94 3.16
177 178 1.279846 CCGGGAAAACTAGCCCAACTA 59.720 52.381 0.00 0.00 44.94 2.24
185 186 1.490574 CTAGCCCAACTAGCACCTCT 58.509 55.000 0.00 0.00 41.99 3.69
186 187 1.410882 CTAGCCCAACTAGCACCTCTC 59.589 57.143 0.00 0.00 41.99 3.20
187 188 1.222113 GCCCAACTAGCACCTCTCC 59.778 63.158 0.00 0.00 0.00 3.71
188 189 1.553690 GCCCAACTAGCACCTCTCCA 61.554 60.000 0.00 0.00 0.00 3.86
189 190 0.250513 CCCAACTAGCACCTCTCCAC 59.749 60.000 0.00 0.00 0.00 4.02
190 191 0.250513 CCAACTAGCACCTCTCCACC 59.749 60.000 0.00 0.00 0.00 4.61
191 192 0.108615 CAACTAGCACCTCTCCACCG 60.109 60.000 0.00 0.00 0.00 4.94
192 193 1.258445 AACTAGCACCTCTCCACCGG 61.258 60.000 0.00 0.00 0.00 5.28
193 194 2.363795 TAGCACCTCTCCACCGGG 60.364 66.667 6.32 0.00 0.00 5.73
194 195 2.856039 CTAGCACCTCTCCACCGGGA 62.856 65.000 6.32 0.00 42.29 5.14
195 196 2.238319 TAGCACCTCTCCACCGGGAT 62.238 60.000 6.32 0.00 43.91 3.85
196 197 1.760875 GCACCTCTCCACCGGGATA 60.761 63.158 6.32 0.00 43.91 2.59
197 198 2.029307 GCACCTCTCCACCGGGATAC 62.029 65.000 6.32 0.00 43.91 2.24
198 199 0.397254 CACCTCTCCACCGGGATACT 60.397 60.000 6.32 0.00 43.91 2.12
199 200 0.338814 ACCTCTCCACCGGGATACTT 59.661 55.000 6.32 0.00 43.91 2.24
200 201 1.273666 ACCTCTCCACCGGGATACTTT 60.274 52.381 6.32 0.00 43.91 2.66
201 202 1.838077 CCTCTCCACCGGGATACTTTT 59.162 52.381 6.32 0.00 43.91 2.27
202 203 2.238898 CCTCTCCACCGGGATACTTTTT 59.761 50.000 6.32 0.00 43.91 1.94
220 221 3.488778 TTTTTACGTGGGTTAGAGGCA 57.511 42.857 0.00 0.00 0.00 4.75
221 222 3.488778 TTTTACGTGGGTTAGAGGCAA 57.511 42.857 0.00 0.00 0.00 4.52
222 223 2.460757 TTACGTGGGTTAGAGGCAAC 57.539 50.000 0.00 0.00 0.00 4.17
238 239 4.959596 GGCAACTAGCTAAAACTAACCC 57.040 45.455 0.00 0.00 44.79 4.11
239 240 4.586884 GGCAACTAGCTAAAACTAACCCT 58.413 43.478 0.00 0.00 44.79 4.34
240 241 5.737860 GGCAACTAGCTAAAACTAACCCTA 58.262 41.667 0.00 0.00 44.79 3.53
241 242 6.354938 GGCAACTAGCTAAAACTAACCCTAT 58.645 40.000 0.00 0.00 44.79 2.57
242 243 6.482641 GGCAACTAGCTAAAACTAACCCTATC 59.517 42.308 0.00 0.00 44.79 2.08
243 244 7.273712 GCAACTAGCTAAAACTAACCCTATCT 58.726 38.462 0.00 0.00 41.15 1.98
244 245 7.224949 GCAACTAGCTAAAACTAACCCTATCTG 59.775 40.741 0.00 0.00 41.15 2.90
245 246 7.974730 ACTAGCTAAAACTAACCCTATCTGT 57.025 36.000 0.00 0.00 0.00 3.41
246 247 8.376803 ACTAGCTAAAACTAACCCTATCTGTT 57.623 34.615 0.00 0.00 0.00 3.16
247 248 8.823794 ACTAGCTAAAACTAACCCTATCTGTTT 58.176 33.333 0.00 0.00 33.04 2.83
248 249 7.923414 AGCTAAAACTAACCCTATCTGTTTG 57.077 36.000 0.00 0.00 32.20 2.93
249 250 6.884836 AGCTAAAACTAACCCTATCTGTTTGG 59.115 38.462 0.00 0.00 32.20 3.28
250 251 6.882678 GCTAAAACTAACCCTATCTGTTTGGA 59.117 38.462 0.00 0.00 32.20 3.53
251 252 7.556635 GCTAAAACTAACCCTATCTGTTTGGAT 59.443 37.037 0.00 0.00 32.20 3.41
252 253 7.939784 AAAACTAACCCTATCTGTTTGGATC 57.060 36.000 0.00 0.00 32.20 3.36
253 254 5.632034 ACTAACCCTATCTGTTTGGATCC 57.368 43.478 4.20 4.20 0.00 3.36
254 255 5.289510 ACTAACCCTATCTGTTTGGATCCT 58.710 41.667 14.23 0.00 0.00 3.24
255 256 5.731678 ACTAACCCTATCTGTTTGGATCCTT 59.268 40.000 14.23 0.00 0.00 3.36
256 257 5.536497 AACCCTATCTGTTTGGATCCTTT 57.464 39.130 14.23 0.00 0.00 3.11
257 258 5.536497 ACCCTATCTGTTTGGATCCTTTT 57.464 39.130 14.23 0.00 0.00 2.27
258 259 5.264395 ACCCTATCTGTTTGGATCCTTTTG 58.736 41.667 14.23 0.00 0.00 2.44
259 260 5.015178 ACCCTATCTGTTTGGATCCTTTTGA 59.985 40.000 14.23 5.48 0.00 2.69
260 261 5.591877 CCCTATCTGTTTGGATCCTTTTGAG 59.408 44.000 14.23 2.86 0.00 3.02
261 262 5.067023 CCTATCTGTTTGGATCCTTTTGAGC 59.933 44.000 14.23 0.00 0.00 4.26
262 263 4.104383 TCTGTTTGGATCCTTTTGAGCT 57.896 40.909 14.23 0.00 0.00 4.09
263 264 5.241403 TCTGTTTGGATCCTTTTGAGCTA 57.759 39.130 14.23 0.00 0.00 3.32
264 265 5.819991 TCTGTTTGGATCCTTTTGAGCTAT 58.180 37.500 14.23 0.00 0.00 2.97
265 266 6.248433 TCTGTTTGGATCCTTTTGAGCTATT 58.752 36.000 14.23 0.00 0.00 1.73
266 267 6.721208 TCTGTTTGGATCCTTTTGAGCTATTT 59.279 34.615 14.23 0.00 0.00 1.40
267 268 6.690530 TGTTTGGATCCTTTTGAGCTATTTG 58.309 36.000 14.23 0.00 0.00 2.32
268 269 6.493115 TGTTTGGATCCTTTTGAGCTATTTGA 59.507 34.615 14.23 0.00 0.00 2.69
269 270 6.764308 TTGGATCCTTTTGAGCTATTTGAG 57.236 37.500 14.23 0.00 0.00 3.02
281 282 4.257267 GCTATTTGAGCCCAAAACAACT 57.743 40.909 0.00 0.00 46.41 3.16
282 283 4.237724 GCTATTTGAGCCCAAAACAACTC 58.762 43.478 0.00 0.00 46.41 3.01
283 284 4.261994 GCTATTTGAGCCCAAAACAACTCA 60.262 41.667 0.00 0.00 46.41 3.41
284 285 4.751767 ATTTGAGCCCAAAACAACTCAA 57.248 36.364 0.00 0.00 44.49 3.02
286 287 3.518634 TGAGCCCAAAACAACTCAAAC 57.481 42.857 0.00 0.00 36.27 2.93
287 288 3.096092 TGAGCCCAAAACAACTCAAACT 58.904 40.909 0.00 0.00 36.27 2.66
288 289 4.274147 TGAGCCCAAAACAACTCAAACTA 58.726 39.130 0.00 0.00 36.27 2.24
289 290 4.707448 TGAGCCCAAAACAACTCAAACTAA 59.293 37.500 0.00 0.00 36.27 2.24
290 291 5.006153 AGCCCAAAACAACTCAAACTAAC 57.994 39.130 0.00 0.00 0.00 2.34
291 292 4.464597 AGCCCAAAACAACTCAAACTAACA 59.535 37.500 0.00 0.00 0.00 2.41
292 293 4.565166 GCCCAAAACAACTCAAACTAACAC 59.435 41.667 0.00 0.00 0.00 3.32
293 294 5.623596 GCCCAAAACAACTCAAACTAACACT 60.624 40.000 0.00 0.00 0.00 3.55
294 295 6.404954 GCCCAAAACAACTCAAACTAACACTA 60.405 38.462 0.00 0.00 0.00 2.74
295 296 7.540299 CCCAAAACAACTCAAACTAACACTAA 58.460 34.615 0.00 0.00 0.00 2.24
296 297 7.486870 CCCAAAACAACTCAAACTAACACTAAC 59.513 37.037 0.00 0.00 0.00 2.34
297 298 8.241367 CCAAAACAACTCAAACTAACACTAACT 58.759 33.333 0.00 0.00 0.00 2.24
298 299 9.274065 CAAAACAACTCAAACTAACACTAACTC 57.726 33.333 0.00 0.00 0.00 3.01
299 300 8.788325 AAACAACTCAAACTAACACTAACTCT 57.212 30.769 0.00 0.00 0.00 3.24
300 301 9.880157 AAACAACTCAAACTAACACTAACTCTA 57.120 29.630 0.00 0.00 0.00 2.43
301 302 9.530633 AACAACTCAAACTAACACTAACTCTAG 57.469 33.333 0.00 0.00 0.00 2.43
302 303 8.142551 ACAACTCAAACTAACACTAACTCTAGG 58.857 37.037 0.00 0.00 0.00 3.02
303 304 8.358148 CAACTCAAACTAACACTAACTCTAGGA 58.642 37.037 0.00 0.00 0.00 2.94
304 305 8.653036 ACTCAAACTAACACTAACTCTAGGAT 57.347 34.615 0.00 0.00 0.00 3.24
305 306 8.741841 ACTCAAACTAACACTAACTCTAGGATC 58.258 37.037 0.00 0.00 0.00 3.36
306 307 8.064336 TCAAACTAACACTAACTCTAGGATCC 57.936 38.462 2.48 2.48 0.00 3.36
307 308 7.672660 TCAAACTAACACTAACTCTAGGATCCA 59.327 37.037 15.82 0.00 0.00 3.41
308 309 8.311836 CAAACTAACACTAACTCTAGGATCCAA 58.688 37.037 15.82 0.00 0.00 3.53
309 310 8.431910 AACTAACACTAACTCTAGGATCCAAA 57.568 34.615 15.82 0.00 0.00 3.28
310 311 7.838884 ACTAACACTAACTCTAGGATCCAAAC 58.161 38.462 15.82 0.00 0.00 2.93
311 312 6.681729 AACACTAACTCTAGGATCCAAACA 57.318 37.500 15.82 0.00 0.00 2.83
312 313 6.287589 ACACTAACTCTAGGATCCAAACAG 57.712 41.667 15.82 6.50 0.00 3.16
313 314 5.187967 ACACTAACTCTAGGATCCAAACAGG 59.812 44.000 15.82 1.33 39.47 4.00
314 315 4.717280 ACTAACTCTAGGATCCAAACAGGG 59.283 45.833 15.82 7.72 38.24 4.45
315 316 1.840635 ACTCTAGGATCCAAACAGGGC 59.159 52.381 15.82 0.00 38.24 5.19
316 317 1.141858 CTCTAGGATCCAAACAGGGCC 59.858 57.143 15.82 0.00 38.24 5.80
317 318 0.183731 CTAGGATCCAAACAGGGCCC 59.816 60.000 16.46 16.46 38.24 5.80
318 319 0.253630 TAGGATCCAAACAGGGCCCT 60.254 55.000 22.28 22.28 40.85 5.19
319 320 0.253630 AGGATCCAAACAGGGCCCTA 60.254 55.000 28.13 8.41 37.68 3.53
320 321 0.183731 GGATCCAAACAGGGCCCTAG 59.816 60.000 28.13 21.28 38.24 3.02
350 351 1.050988 ACCTCTGTGTCCAGTGCAGT 61.051 55.000 0.00 0.00 39.82 4.40
392 393 3.346734 GGGAGGGAATGGTGGCCA 61.347 66.667 0.00 0.00 38.19 5.36
502 503 0.979665 CCAAAGCCAGAGAGAGACCA 59.020 55.000 0.00 0.00 0.00 4.02
503 504 1.066286 CCAAAGCCAGAGAGAGACCAG 60.066 57.143 0.00 0.00 0.00 4.00
504 505 1.898472 CAAAGCCAGAGAGAGACCAGA 59.102 52.381 0.00 0.00 0.00 3.86
505 506 1.851304 AAGCCAGAGAGAGACCAGAG 58.149 55.000 0.00 0.00 0.00 3.35
543 571 1.064952 GAGGACTACTCTTCTCGCAGC 59.935 57.143 0.00 0.00 43.14 5.25
694 761 3.338126 GACGTCACGGCTCGATGGT 62.338 63.158 11.55 0.00 0.00 3.55
825 892 2.733593 GCGGCGCCTAAGATACCG 60.734 66.667 26.68 8.83 46.50 4.02
864 934 2.368131 CTACCTCTCGCACTCGCTCG 62.368 65.000 0.00 0.00 35.30 5.03
1099 1193 2.125673 CCGACCCCGTGTAAGCTG 60.126 66.667 0.00 0.00 0.00 4.24
1131 1225 0.179089 CCTCCTCCACTTGCATCTCG 60.179 60.000 0.00 0.00 0.00 4.04
1157 1251 3.206150 TCTGTGCTGTTTCTTCTGTTCC 58.794 45.455 0.00 0.00 0.00 3.62
1166 1265 1.140312 TCTTCTGTTCCCTGCCTTGT 58.860 50.000 0.00 0.00 0.00 3.16
1180 1279 1.740718 GCCTTGTCAGTCTCGGGATTC 60.741 57.143 0.00 0.00 0.00 2.52
1199 1298 0.865769 CCGTGTGCTAGTTTGACACC 59.134 55.000 0.00 0.00 37.32 4.16
1292 1394 2.945668 GGCTTGGCACTTATAAGGAGTG 59.054 50.000 16.73 7.93 45.64 3.51
1293 1395 3.610911 GCTTGGCACTTATAAGGAGTGT 58.389 45.455 16.73 0.00 44.88 3.55
1294 1396 3.375299 GCTTGGCACTTATAAGGAGTGTG 59.625 47.826 16.73 7.34 44.88 3.82
1295 1397 4.579869 CTTGGCACTTATAAGGAGTGTGT 58.420 43.478 16.73 0.00 44.88 3.72
1296 1398 3.937814 TGGCACTTATAAGGAGTGTGTG 58.062 45.455 16.73 6.00 44.88 3.82
1306 1408 0.726827 GGAGTGTGTGTGTGTGTGTG 59.273 55.000 0.00 0.00 0.00 3.82
1372 1474 0.604578 TGCAGCTTCAGGAATTTGGC 59.395 50.000 0.00 0.00 0.00 4.52
1675 1777 2.358957 TGCAGTTTCATGATTCCTCCG 58.641 47.619 0.00 0.00 0.00 4.63
1731 1833 0.898326 ATCCCTCCGGGTTTGTTTGC 60.898 55.000 0.00 0.00 44.74 3.68
1739 1841 0.177836 GGGTTTGTTTGCTGGTTGCT 59.822 50.000 0.00 0.00 43.37 3.91
1771 1873 2.424705 AATGGCTGCTGCGTTTGTGG 62.425 55.000 9.65 0.00 40.82 4.17
1924 2026 5.334879 CGATTTCCGTTTTCTCTGGTTCAAT 60.335 40.000 0.00 0.00 0.00 2.57
2068 2173 9.330063 CTAGCATCATACTGGAAAATAAGTGAA 57.670 33.333 0.00 0.00 0.00 3.18
2095 2200 4.748600 GGGATACGGTAGCTGTAAATGAAC 59.251 45.833 3.18 0.00 37.60 3.18
2114 2219 6.299023 TGAACATTTACATGTGTCTGTCAC 57.701 37.500 9.11 7.42 43.34 3.67
2141 2246 8.565896 TGCAAAAGAATACATGTGAATCTACT 57.434 30.769 9.11 0.00 0.00 2.57
2150 2255 9.793252 AATACATGTGAATCTACTTTGATTTGC 57.207 29.630 9.11 0.00 36.86 3.68
2369 2483 2.555325 TGCTTGCTTCTGGAACTCAATG 59.445 45.455 0.00 0.00 0.00 2.82
2479 2593 4.082081 TCCAAACTTCAAATGCATGCTAGG 60.082 41.667 20.33 6.08 0.00 3.02
2838 2952 6.312426 CAGTGGTGTAATCAGAATGTTCTCTC 59.688 42.308 0.00 0.00 34.74 3.20
2846 2960 4.707105 TCAGAATGTTCTCTCTTGCAACA 58.293 39.130 0.00 0.00 34.74 3.33
2865 2979 7.988737 TGCAACAGAATATCTAGAAATGTTGG 58.011 34.615 24.55 14.86 43.75 3.77
3088 3366 1.210478 ACCAGCGATCAAGTATGGCTT 59.790 47.619 0.00 0.00 46.39 4.35
3225 3503 1.575244 GATCTGATAGCGCAACTGCA 58.425 50.000 11.47 0.00 42.21 4.41
3353 3631 6.795098 ACAACAAGCGTCTTATTGTGATAA 57.205 33.333 13.07 0.00 39.50 1.75
3383 3661 4.526650 TGGAAGTAATACACAGAGTGCTGA 59.473 41.667 0.00 0.00 45.17 4.26
3395 3673 3.622163 CAGAGTGCTGAAATAAGCTCTGG 59.378 47.826 10.49 0.00 44.70 3.86
3490 3768 1.664151 GTAGCGGTACAGATTTGGCAC 59.336 52.381 19.43 0.00 0.00 5.01
3510 3788 2.076100 CGGAGTGCACTGCTAAAATCA 58.924 47.619 31.82 0.00 31.63 2.57
3580 3858 2.027192 TCACATGGAAGAGTTGGCCTAC 60.027 50.000 9.54 9.54 0.00 3.18
3861 4139 0.458669 GCTTGAATGGCATGTCCCAG 59.541 55.000 0.00 1.98 38.50 4.45
4000 4278 1.065926 CAGCTATGCCCAGTGAGACAA 60.066 52.381 0.00 0.00 0.00 3.18
4140 4418 8.816144 GCAAAATCTCATAGTTTAGACAGAGAG 58.184 37.037 0.00 0.00 35.45 3.20
4993 5271 1.747206 GCTGGTCTGTTGTGGTTGAGT 60.747 52.381 0.00 0.00 0.00 3.41
5101 5379 4.023963 GTGTGGAAAGACTACTTTGAAGGC 60.024 45.833 0.00 0.00 44.97 4.35
5200 5478 4.265073 GTCAGATGCTTGTGGAGGTAATT 58.735 43.478 0.00 0.00 0.00 1.40
5206 5484 3.820467 TGCTTGTGGAGGTAATTGTTCAG 59.180 43.478 0.00 0.00 0.00 3.02
5248 5527 4.481930 TTTGCAGTCTCATTGTTTACCG 57.518 40.909 0.00 0.00 0.00 4.02
5266 5545 1.267532 CCGACAATCGCATGTAGTTGC 60.268 52.381 0.00 0.00 38.82 4.17
5295 5574 0.872388 GTGTTGACATCACGGGGTTC 59.128 55.000 1.02 0.00 0.00 3.62
5422 5701 1.173913 AAATCTGGGCACGCTTTACC 58.826 50.000 0.00 0.00 0.00 2.85
5488 5793 6.430308 CACATCATTAGAGCTATGGAATGCTT 59.570 38.462 0.00 0.00 39.91 3.91
5503 5808 4.387862 GGAATGCTTCTGCTGATTTTTGTG 59.612 41.667 0.00 0.00 40.48 3.33
5506 5811 5.963176 TGCTTCTGCTGATTTTTGTGATA 57.037 34.783 0.00 0.00 40.48 2.15
5722 6027 1.808945 GCAGAGAATCCCAACAGTGTG 59.191 52.381 0.00 0.00 33.66 3.82
5807 6112 1.076044 GAGAGAGCCCTCAGCCTCT 60.076 63.158 0.00 0.00 45.92 3.69
5979 6285 0.615331 TGTGCACCTTCATCTCCCTC 59.385 55.000 15.69 0.00 0.00 4.30
5980 6286 0.460987 GTGCACCTTCATCTCCCTCG 60.461 60.000 5.22 0.00 0.00 4.63
5981 6287 0.614697 TGCACCTTCATCTCCCTCGA 60.615 55.000 0.00 0.00 0.00 4.04
5982 6288 0.103937 GCACCTTCATCTCCCTCGAG 59.896 60.000 5.13 5.13 37.48 4.04
5983 6289 0.103937 CACCTTCATCTCCCTCGAGC 59.896 60.000 6.99 0.00 35.94 5.03
6004 6310 2.798283 CCGCAGAAAGTCTTAACGTGAA 59.202 45.455 0.00 0.00 0.00 3.18
6022 6328 1.327764 GAAATGCATCGAAGACGGGAC 59.672 52.381 0.00 0.00 42.51 4.46
6023 6329 0.537188 AATGCATCGAAGACGGGACT 59.463 50.000 0.00 0.00 42.51 3.85
6099 6405 3.612472 TGCTTGTTACTTTTGCCGTAC 57.388 42.857 0.00 0.00 0.00 3.67
6168 6474 2.227865 GCGTTGATAACTGGAAAGCCAA 59.772 45.455 0.00 0.00 45.41 4.52
6366 6681 3.827302 GACCTCTCTGTCAACCAAGACTA 59.173 47.826 0.00 0.00 39.27 2.59
6372 6687 7.009179 TCTCTGTCAACCAAGACTAATGATT 57.991 36.000 0.00 0.00 39.27 2.57
6373 6688 6.875726 TCTCTGTCAACCAAGACTAATGATTG 59.124 38.462 0.00 0.00 39.27 2.67
6374 6689 6.533730 TCTGTCAACCAAGACTAATGATTGT 58.466 36.000 0.00 0.00 39.27 2.71
6375 6690 6.998074 TCTGTCAACCAAGACTAATGATTGTT 59.002 34.615 0.00 0.00 39.27 2.83
6376 6691 7.173218 TCTGTCAACCAAGACTAATGATTGTTC 59.827 37.037 0.00 0.00 39.27 3.18
6377 6692 6.206634 TGTCAACCAAGACTAATGATTGTTCC 59.793 38.462 0.00 0.00 39.27 3.62
6378 6693 6.431234 GTCAACCAAGACTAATGATTGTTCCT 59.569 38.462 0.00 0.00 35.65 3.36
6379 6694 7.004086 TCAACCAAGACTAATGATTGTTCCTT 58.996 34.615 0.00 0.00 0.00 3.36
6380 6695 7.174946 TCAACCAAGACTAATGATTGTTCCTTC 59.825 37.037 0.00 0.00 0.00 3.46
6381 6696 6.784031 ACCAAGACTAATGATTGTTCCTTCT 58.216 36.000 0.00 0.00 0.00 2.85
6382 6697 7.918076 ACCAAGACTAATGATTGTTCCTTCTA 58.082 34.615 0.00 0.00 0.00 2.10
6383 6698 8.552296 ACCAAGACTAATGATTGTTCCTTCTAT 58.448 33.333 0.00 0.00 0.00 1.98
6384 6699 9.401058 CCAAGACTAATGATTGTTCCTTCTATT 57.599 33.333 0.00 0.00 0.00 1.73
6388 6703 8.888579 ACTAATGATTGTTCCTTCTATTACCG 57.111 34.615 0.00 0.00 0.00 4.02
6389 6704 8.483758 ACTAATGATTGTTCCTTCTATTACCGT 58.516 33.333 0.00 0.00 0.00 4.83
6390 6705 7.787725 AATGATTGTTCCTTCTATTACCGTC 57.212 36.000 0.00 0.00 0.00 4.79
6391 6706 6.540438 TGATTGTTCCTTCTATTACCGTCT 57.460 37.500 0.00 0.00 0.00 4.18
6392 6707 6.942976 TGATTGTTCCTTCTATTACCGTCTT 58.057 36.000 0.00 0.00 0.00 3.01
6393 6708 7.391620 TGATTGTTCCTTCTATTACCGTCTTT 58.608 34.615 0.00 0.00 0.00 2.52
6394 6709 7.881232 TGATTGTTCCTTCTATTACCGTCTTTT 59.119 33.333 0.00 0.00 0.00 2.27
6395 6710 8.631480 ATTGTTCCTTCTATTACCGTCTTTTT 57.369 30.769 0.00 0.00 0.00 1.94
6491 6813 5.531122 TTATCTTGTACTCCCTCCATTCG 57.469 43.478 0.00 0.00 0.00 3.34
6565 6887 1.975660 GGTTGTACCTGTTTGGAGCA 58.024 50.000 0.00 0.00 39.71 4.26
6566 6888 1.880027 GGTTGTACCTGTTTGGAGCAG 59.120 52.381 0.00 0.00 39.71 4.24
6567 6889 2.486548 GGTTGTACCTGTTTGGAGCAGA 60.487 50.000 0.00 0.00 39.71 4.26
6568 6890 2.808543 GTTGTACCTGTTTGGAGCAGAG 59.191 50.000 0.00 0.00 39.71 3.35
6569 6891 1.347707 TGTACCTGTTTGGAGCAGAGG 59.652 52.381 0.00 0.00 39.71 3.69
6570 6892 0.984230 TACCTGTTTGGAGCAGAGGG 59.016 55.000 0.00 0.00 39.71 4.30
6571 6893 1.062488 ACCTGTTTGGAGCAGAGGGT 61.062 55.000 0.00 0.00 39.71 4.34
6572 6894 0.111253 CCTGTTTGGAGCAGAGGGTT 59.889 55.000 0.00 0.00 38.35 4.11
6573 6895 1.479389 CCTGTTTGGAGCAGAGGGTTT 60.479 52.381 0.00 0.00 38.35 3.27
6575 6897 2.695147 CTGTTTGGAGCAGAGGGTTTTT 59.305 45.455 0.00 0.00 36.12 1.94
6577 6899 2.959030 GTTTGGAGCAGAGGGTTTTTCT 59.041 45.455 0.00 0.00 0.00 2.52
6578 6900 3.312736 TTGGAGCAGAGGGTTTTTCTT 57.687 42.857 0.00 0.00 0.00 2.52
6579 6901 3.312736 TGGAGCAGAGGGTTTTTCTTT 57.687 42.857 0.00 0.00 0.00 2.52
6581 6903 3.636764 TGGAGCAGAGGGTTTTTCTTTTC 59.363 43.478 0.00 0.00 0.00 2.29
6582 6904 3.891977 GGAGCAGAGGGTTTTTCTTTTCT 59.108 43.478 0.00 0.00 0.00 2.52
6586 10439 6.108687 AGCAGAGGGTTTTTCTTTTCTTTTG 58.891 36.000 0.00 0.00 0.00 2.44
6593 10446 5.220397 GGTTTTTCTTTTCTTTTGTCCTGCG 60.220 40.000 0.00 0.00 0.00 5.18
6610 10463 5.049680 GTCCTGCGAGAAATGAACTGTTTTA 60.050 40.000 0.00 0.00 0.00 1.52
6676 10529 5.898174 AGTTTTGGTTGCTAAAGGTAACAC 58.102 37.500 0.00 0.00 41.31 3.32
6698 10551 3.556365 CGATATGCCATCTCATGCATCTC 59.444 47.826 0.00 0.50 44.58 2.75
6699 10552 2.201921 ATGCCATCTCATGCATCTCC 57.798 50.000 0.00 0.00 44.58 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.796231 CTCTCGTTCCCCACCGCG 62.796 72.222 0.00 0.00 0.00 6.46
40 41 4.452733 CCTCTCGTTCCCCACCGC 62.453 72.222 0.00 0.00 0.00 5.68
41 42 4.452733 GCCTCTCGTTCCCCACCG 62.453 72.222 0.00 0.00 0.00 4.94
42 43 4.452733 CGCCTCTCGTTCCCCACC 62.453 72.222 0.00 0.00 0.00 4.61
66 67 4.880426 TCCCTCCCGCATCCCCTC 62.880 72.222 0.00 0.00 0.00 4.30
67 68 4.888325 CTCCCTCCCGCATCCCCT 62.888 72.222 0.00 0.00 0.00 4.79
71 72 4.292178 CTCGCTCCCTCCCGCATC 62.292 72.222 0.00 0.00 0.00 3.91
75 76 4.924187 ATCCCTCGCTCCCTCCCG 62.924 72.222 0.00 0.00 0.00 5.14
76 77 2.920384 GATCCCTCGCTCCCTCCC 60.920 72.222 0.00 0.00 0.00 4.30
77 78 2.200092 AGATCCCTCGCTCCCTCC 59.800 66.667 0.00 0.00 0.00 4.30
78 79 2.206536 CCAGATCCCTCGCTCCCTC 61.207 68.421 0.00 0.00 0.00 4.30
79 80 2.123077 CCAGATCCCTCGCTCCCT 60.123 66.667 0.00 0.00 0.00 4.20
80 81 2.444895 ACCAGATCCCTCGCTCCC 60.445 66.667 0.00 0.00 0.00 4.30
81 82 2.818132 CACCAGATCCCTCGCTCC 59.182 66.667 0.00 0.00 0.00 4.70
82 83 2.107953 GCACCAGATCCCTCGCTC 59.892 66.667 0.00 0.00 0.00 5.03
83 84 3.842923 CGCACCAGATCCCTCGCT 61.843 66.667 0.00 0.00 0.00 4.93
84 85 4.899239 CCGCACCAGATCCCTCGC 62.899 72.222 0.00 0.00 0.00 5.03
85 86 4.227134 CCCGCACCAGATCCCTCG 62.227 72.222 0.00 0.00 0.00 4.63
86 87 2.764128 TCCCGCACCAGATCCCTC 60.764 66.667 0.00 0.00 0.00 4.30
87 88 3.083997 GTCCCGCACCAGATCCCT 61.084 66.667 0.00 0.00 0.00 4.20
88 89 4.530857 CGTCCCGCACCAGATCCC 62.531 72.222 0.00 0.00 0.00 3.85
89 90 2.907897 CTTCGTCCCGCACCAGATCC 62.908 65.000 0.00 0.00 0.00 3.36
90 91 1.519455 CTTCGTCCCGCACCAGATC 60.519 63.158 0.00 0.00 0.00 2.75
91 92 2.579201 CTTCGTCCCGCACCAGAT 59.421 61.111 0.00 0.00 0.00 2.90
92 93 3.691342 CCTTCGTCCCGCACCAGA 61.691 66.667 0.00 0.00 0.00 3.86
93 94 4.760047 CCCTTCGTCCCGCACCAG 62.760 72.222 0.00 0.00 0.00 4.00
95 96 3.735037 GATCCCTTCGTCCCGCACC 62.735 68.421 0.00 0.00 0.00 5.01
96 97 2.202892 GATCCCTTCGTCCCGCAC 60.203 66.667 0.00 0.00 0.00 5.34
97 98 2.363795 AGATCCCTTCGTCCCGCA 60.364 61.111 0.00 0.00 0.00 5.69
98 99 2.107141 CAGATCCCTTCGTCCCGC 59.893 66.667 0.00 0.00 0.00 6.13
99 100 2.058595 ACCAGATCCCTTCGTCCCG 61.059 63.158 0.00 0.00 0.00 5.14
100 101 1.265454 ACACCAGATCCCTTCGTCCC 61.265 60.000 0.00 0.00 0.00 4.46
101 102 0.108138 CACACCAGATCCCTTCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
102 103 0.108138 CCACACCAGATCCCTTCGTC 60.108 60.000 0.00 0.00 0.00 4.20
103 104 1.553690 CCCACACCAGATCCCTTCGT 61.554 60.000 0.00 0.00 0.00 3.85
104 105 1.221840 CCCACACCAGATCCCTTCG 59.778 63.158 0.00 0.00 0.00 3.79
105 106 0.543749 CTCCCACACCAGATCCCTTC 59.456 60.000 0.00 0.00 0.00 3.46
106 107 0.916358 CCTCCCACACCAGATCCCTT 60.916 60.000 0.00 0.00 0.00 3.95
107 108 1.307343 CCTCCCACACCAGATCCCT 60.307 63.158 0.00 0.00 0.00 4.20
108 109 2.378634 CCCTCCCACACCAGATCCC 61.379 68.421 0.00 0.00 0.00 3.85
109 110 1.616628 ACCCTCCCACACCAGATCC 60.617 63.158 0.00 0.00 0.00 3.36
110 111 0.909610 TCACCCTCCCACACCAGATC 60.910 60.000 0.00 0.00 0.00 2.75
111 112 0.253347 ATCACCCTCCCACACCAGAT 60.253 55.000 0.00 0.00 0.00 2.90
112 113 0.475632 AATCACCCTCCCACACCAGA 60.476 55.000 0.00 0.00 0.00 3.86
113 114 0.405585 AAATCACCCTCCCACACCAG 59.594 55.000 0.00 0.00 0.00 4.00
114 115 0.856982 AAAATCACCCTCCCACACCA 59.143 50.000 0.00 0.00 0.00 4.17
115 116 2.009681 AAAAATCACCCTCCCACACC 57.990 50.000 0.00 0.00 0.00 4.16
132 133 6.993308 GGGCCCACAAAAAGAATAACTAAAAA 59.007 34.615 19.95 0.00 0.00 1.94
133 134 6.464607 GGGGCCCACAAAAAGAATAACTAAAA 60.465 38.462 26.86 0.00 0.00 1.52
134 135 5.012251 GGGGCCCACAAAAAGAATAACTAAA 59.988 40.000 26.86 0.00 0.00 1.85
135 136 4.528987 GGGGCCCACAAAAAGAATAACTAA 59.471 41.667 26.86 0.00 0.00 2.24
136 137 4.090819 GGGGCCCACAAAAAGAATAACTA 58.909 43.478 26.86 0.00 0.00 2.24
137 138 2.903784 GGGGCCCACAAAAAGAATAACT 59.096 45.455 26.86 0.00 0.00 2.24
138 139 2.353307 CGGGGCCCACAAAAAGAATAAC 60.353 50.000 26.86 0.00 0.00 1.89
139 140 1.896465 CGGGGCCCACAAAAAGAATAA 59.104 47.619 26.86 0.00 0.00 1.40
140 141 1.551452 CGGGGCCCACAAAAAGAATA 58.449 50.000 26.86 0.00 0.00 1.75
141 142 1.191489 CCGGGGCCCACAAAAAGAAT 61.191 55.000 26.86 0.00 0.00 2.40
142 143 1.834822 CCGGGGCCCACAAAAAGAA 60.835 57.895 26.86 0.00 0.00 2.52
143 144 2.203567 CCGGGGCCCACAAAAAGA 60.204 61.111 26.86 0.00 0.00 2.52
144 145 3.310307 CCCGGGGCCCACAAAAAG 61.310 66.667 26.86 3.55 0.00 2.27
145 146 2.891307 TTTCCCGGGGCCCACAAAAA 62.891 55.000 26.86 15.38 0.00 1.94
146 147 2.891307 TTTTCCCGGGGCCCACAAAA 62.891 55.000 26.86 19.53 0.00 2.44
147 148 3.390671 TTTTCCCGGGGCCCACAAA 62.391 57.895 26.86 14.61 0.00 2.83
148 149 3.834056 TTTTCCCGGGGCCCACAA 61.834 61.111 26.86 8.67 0.00 3.33
149 150 4.607025 GTTTTCCCGGGGCCCACA 62.607 66.667 26.86 1.38 0.00 4.17
150 151 2.831894 CTAGTTTTCCCGGGGCCCAC 62.832 65.000 26.86 11.51 0.00 4.61
151 152 2.532199 TAGTTTTCCCGGGGCCCA 60.532 61.111 26.86 0.00 0.00 5.36
152 153 2.274432 CTAGTTTTCCCGGGGCCC 59.726 66.667 23.50 15.76 0.00 5.80
153 154 2.439701 GCTAGTTTTCCCGGGGCC 60.440 66.667 23.50 6.05 0.00 5.80
154 155 2.439701 GGCTAGTTTTCCCGGGGC 60.440 66.667 23.50 14.31 0.00 5.80
155 156 2.144859 TTGGGCTAGTTTTCCCGGGG 62.145 60.000 23.50 6.77 45.60 5.73
156 157 0.963856 GTTGGGCTAGTTTTCCCGGG 60.964 60.000 16.85 16.85 45.60 5.73
157 158 0.037734 AGTTGGGCTAGTTTTCCCGG 59.962 55.000 0.00 0.00 45.60 5.73
158 159 2.629051 CTAGTTGGGCTAGTTTTCCCG 58.371 52.381 0.00 0.00 45.60 5.14
159 160 2.290705 TGCTAGTTGGGCTAGTTTTCCC 60.291 50.000 3.63 0.00 46.81 3.97
160 161 2.747989 GTGCTAGTTGGGCTAGTTTTCC 59.252 50.000 3.63 0.00 46.81 3.13
161 162 2.747989 GGTGCTAGTTGGGCTAGTTTTC 59.252 50.000 3.63 0.00 46.81 2.29
162 163 2.375509 AGGTGCTAGTTGGGCTAGTTTT 59.624 45.455 3.63 0.00 46.81 2.43
163 164 1.985895 AGGTGCTAGTTGGGCTAGTTT 59.014 47.619 3.63 0.00 46.81 2.66
164 165 1.555533 GAGGTGCTAGTTGGGCTAGTT 59.444 52.381 3.63 0.00 46.81 2.24
165 166 1.196012 GAGGTGCTAGTTGGGCTAGT 58.804 55.000 3.63 0.00 46.81 2.57
167 168 1.486211 GAGAGGTGCTAGTTGGGCTA 58.514 55.000 0.00 0.00 0.00 3.93
168 169 1.268283 GGAGAGGTGCTAGTTGGGCT 61.268 60.000 0.00 0.00 0.00 5.19
169 170 1.222113 GGAGAGGTGCTAGTTGGGC 59.778 63.158 0.00 0.00 0.00 5.36
170 171 0.250513 GTGGAGAGGTGCTAGTTGGG 59.749 60.000 0.00 0.00 0.00 4.12
171 172 0.250513 GGTGGAGAGGTGCTAGTTGG 59.749 60.000 0.00 0.00 0.00 3.77
172 173 0.108615 CGGTGGAGAGGTGCTAGTTG 60.109 60.000 0.00 0.00 0.00 3.16
173 174 1.258445 CCGGTGGAGAGGTGCTAGTT 61.258 60.000 0.00 0.00 0.00 2.24
174 175 1.682684 CCGGTGGAGAGGTGCTAGT 60.683 63.158 0.00 0.00 0.00 2.57
175 176 2.427245 CCCGGTGGAGAGGTGCTAG 61.427 68.421 0.00 0.00 0.00 3.42
176 177 2.238319 ATCCCGGTGGAGAGGTGCTA 62.238 60.000 0.00 0.00 46.08 3.49
177 178 2.238319 TATCCCGGTGGAGAGGTGCT 62.238 60.000 0.00 0.00 46.08 4.40
178 179 1.760875 TATCCCGGTGGAGAGGTGC 60.761 63.158 0.00 0.00 46.08 5.01
179 180 0.397254 AGTATCCCGGTGGAGAGGTG 60.397 60.000 0.00 0.00 46.08 4.00
180 181 0.338814 AAGTATCCCGGTGGAGAGGT 59.661 55.000 0.00 0.00 46.08 3.85
181 182 1.497161 AAAGTATCCCGGTGGAGAGG 58.503 55.000 0.00 0.00 46.08 3.69
182 183 3.629142 AAAAAGTATCCCGGTGGAGAG 57.371 47.619 0.00 0.00 46.08 3.20
200 201 3.488778 TGCCTCTAACCCACGTAAAAA 57.511 42.857 0.00 0.00 0.00 1.94
201 202 3.140623 GTTGCCTCTAACCCACGTAAAA 58.859 45.455 0.00 0.00 0.00 1.52
202 203 2.369532 AGTTGCCTCTAACCCACGTAAA 59.630 45.455 0.00 0.00 0.00 2.01
203 204 1.972795 AGTTGCCTCTAACCCACGTAA 59.027 47.619 0.00 0.00 0.00 3.18
204 205 1.636148 AGTTGCCTCTAACCCACGTA 58.364 50.000 0.00 0.00 0.00 3.57
205 206 1.549170 CTAGTTGCCTCTAACCCACGT 59.451 52.381 0.00 0.00 0.00 4.49
206 207 1.739371 GCTAGTTGCCTCTAACCCACG 60.739 57.143 0.00 0.00 35.15 4.94
207 208 1.555533 AGCTAGTTGCCTCTAACCCAC 59.444 52.381 0.00 0.00 44.23 4.61
208 209 1.952621 AGCTAGTTGCCTCTAACCCA 58.047 50.000 0.00 0.00 44.23 4.51
209 210 4.482952 TTTAGCTAGTTGCCTCTAACCC 57.517 45.455 0.00 0.00 44.23 4.11
210 211 5.489249 AGTTTTAGCTAGTTGCCTCTAACC 58.511 41.667 0.00 0.00 44.23 2.85
211 212 7.064371 GGTTAGTTTTAGCTAGTTGCCTCTAAC 59.936 40.741 14.84 14.84 44.23 2.34
212 213 7.101700 GGTTAGTTTTAGCTAGTTGCCTCTAA 58.898 38.462 0.00 0.00 44.23 2.10
213 214 6.351626 GGGTTAGTTTTAGCTAGTTGCCTCTA 60.352 42.308 0.00 0.00 44.23 2.43
214 215 5.489249 GGTTAGTTTTAGCTAGTTGCCTCT 58.511 41.667 0.00 0.00 44.23 3.69
215 216 4.634883 GGGTTAGTTTTAGCTAGTTGCCTC 59.365 45.833 0.00 0.00 44.23 4.70
216 217 4.288887 AGGGTTAGTTTTAGCTAGTTGCCT 59.711 41.667 0.00 0.00 44.23 4.75
217 218 4.586884 AGGGTTAGTTTTAGCTAGTTGCC 58.413 43.478 0.00 0.00 44.23 4.52
218 219 7.224949 CAGATAGGGTTAGTTTTAGCTAGTTGC 59.775 40.741 0.00 0.00 43.29 4.17
219 220 8.258708 ACAGATAGGGTTAGTTTTAGCTAGTTG 58.741 37.037 0.00 0.00 0.00 3.16
220 221 8.376803 ACAGATAGGGTTAGTTTTAGCTAGTT 57.623 34.615 0.00 0.00 0.00 2.24
221 222 7.974730 ACAGATAGGGTTAGTTTTAGCTAGT 57.025 36.000 0.00 0.00 0.00 2.57
222 223 9.099454 CAAACAGATAGGGTTAGTTTTAGCTAG 57.901 37.037 0.00 0.00 30.68 3.42
223 224 8.044908 CCAAACAGATAGGGTTAGTTTTAGCTA 58.955 37.037 0.00 0.00 30.68 3.32
224 225 6.884836 CCAAACAGATAGGGTTAGTTTTAGCT 59.115 38.462 0.00 0.00 30.68 3.32
225 226 6.882678 TCCAAACAGATAGGGTTAGTTTTAGC 59.117 38.462 0.00 0.00 30.68 3.09
226 227 9.110502 GATCCAAACAGATAGGGTTAGTTTTAG 57.889 37.037 0.00 0.00 30.68 1.85
227 228 8.050930 GGATCCAAACAGATAGGGTTAGTTTTA 58.949 37.037 6.95 0.00 30.68 1.52
228 229 6.890268 GGATCCAAACAGATAGGGTTAGTTTT 59.110 38.462 6.95 0.00 30.68 2.43
229 230 6.217693 AGGATCCAAACAGATAGGGTTAGTTT 59.782 38.462 15.82 0.00 33.09 2.66
230 231 5.731678 AGGATCCAAACAGATAGGGTTAGTT 59.268 40.000 15.82 0.00 0.00 2.24
231 232 5.289510 AGGATCCAAACAGATAGGGTTAGT 58.710 41.667 15.82 0.00 0.00 2.24
232 233 5.896073 AGGATCCAAACAGATAGGGTTAG 57.104 43.478 15.82 0.00 0.00 2.34
233 234 6.652205 AAAGGATCCAAACAGATAGGGTTA 57.348 37.500 15.82 0.00 0.00 2.85
234 235 5.536497 AAAGGATCCAAACAGATAGGGTT 57.464 39.130 15.82 0.00 0.00 4.11
235 236 5.015178 TCAAAAGGATCCAAACAGATAGGGT 59.985 40.000 15.82 0.00 0.00 4.34
236 237 5.509498 TCAAAAGGATCCAAACAGATAGGG 58.491 41.667 15.82 0.00 0.00 3.53
237 238 5.067023 GCTCAAAAGGATCCAAACAGATAGG 59.933 44.000 15.82 0.00 0.00 2.57
238 239 5.884792 AGCTCAAAAGGATCCAAACAGATAG 59.115 40.000 15.82 2.01 0.00 2.08
239 240 5.819991 AGCTCAAAAGGATCCAAACAGATA 58.180 37.500 15.82 0.00 0.00 1.98
240 241 4.670765 AGCTCAAAAGGATCCAAACAGAT 58.329 39.130 15.82 0.00 0.00 2.90
241 242 4.104383 AGCTCAAAAGGATCCAAACAGA 57.896 40.909 15.82 4.22 0.00 3.41
242 243 6.521151 AATAGCTCAAAAGGATCCAAACAG 57.479 37.500 15.82 4.01 0.00 3.16
243 244 6.493115 TCAAATAGCTCAAAAGGATCCAAACA 59.507 34.615 15.82 0.00 0.00 2.83
244 245 6.924111 TCAAATAGCTCAAAAGGATCCAAAC 58.076 36.000 15.82 0.00 0.00 2.93
245 246 7.161773 CTCAAATAGCTCAAAAGGATCCAAA 57.838 36.000 15.82 0.00 0.00 3.28
246 247 6.764308 CTCAAATAGCTCAAAAGGATCCAA 57.236 37.500 15.82 0.00 0.00 3.53
261 262 5.452078 TGAGTTGTTTTGGGCTCAAATAG 57.548 39.130 13.63 0.00 41.84 1.73
262 263 5.860941 TTGAGTTGTTTTGGGCTCAAATA 57.139 34.783 13.63 2.27 42.66 1.40
263 264 4.751767 TTGAGTTGTTTTGGGCTCAAAT 57.248 36.364 13.63 0.00 42.66 2.32
265 266 3.513515 AGTTTGAGTTGTTTTGGGCTCAA 59.486 39.130 0.00 0.00 43.53 3.02
266 267 3.096092 AGTTTGAGTTGTTTTGGGCTCA 58.904 40.909 0.00 0.00 36.35 4.26
267 268 3.801114 AGTTTGAGTTGTTTTGGGCTC 57.199 42.857 0.00 0.00 0.00 4.70
268 269 4.464597 TGTTAGTTTGAGTTGTTTTGGGCT 59.535 37.500 0.00 0.00 0.00 5.19
269 270 4.565166 GTGTTAGTTTGAGTTGTTTTGGGC 59.435 41.667 0.00 0.00 0.00 5.36
270 271 5.961272 AGTGTTAGTTTGAGTTGTTTTGGG 58.039 37.500 0.00 0.00 0.00 4.12
271 272 8.241367 AGTTAGTGTTAGTTTGAGTTGTTTTGG 58.759 33.333 0.00 0.00 0.00 3.28
272 273 9.274065 GAGTTAGTGTTAGTTTGAGTTGTTTTG 57.726 33.333 0.00 0.00 0.00 2.44
273 274 9.227777 AGAGTTAGTGTTAGTTTGAGTTGTTTT 57.772 29.630 0.00 0.00 0.00 2.43
274 275 8.788325 AGAGTTAGTGTTAGTTTGAGTTGTTT 57.212 30.769 0.00 0.00 0.00 2.83
275 276 9.530633 CTAGAGTTAGTGTTAGTTTGAGTTGTT 57.469 33.333 0.00 0.00 0.00 2.83
276 277 8.142551 CCTAGAGTTAGTGTTAGTTTGAGTTGT 58.857 37.037 0.00 0.00 0.00 3.32
277 278 8.358148 TCCTAGAGTTAGTGTTAGTTTGAGTTG 58.642 37.037 0.00 0.00 0.00 3.16
278 279 8.474710 TCCTAGAGTTAGTGTTAGTTTGAGTT 57.525 34.615 0.00 0.00 0.00 3.01
279 280 8.653036 ATCCTAGAGTTAGTGTTAGTTTGAGT 57.347 34.615 0.00 0.00 0.00 3.41
280 281 8.192110 GGATCCTAGAGTTAGTGTTAGTTTGAG 58.808 40.741 3.84 0.00 0.00 3.02
281 282 7.672660 TGGATCCTAGAGTTAGTGTTAGTTTGA 59.327 37.037 14.23 0.00 0.00 2.69
282 283 7.837863 TGGATCCTAGAGTTAGTGTTAGTTTG 58.162 38.462 14.23 0.00 0.00 2.93
283 284 8.431910 TTGGATCCTAGAGTTAGTGTTAGTTT 57.568 34.615 14.23 0.00 0.00 2.66
284 285 8.312564 GTTTGGATCCTAGAGTTAGTGTTAGTT 58.687 37.037 14.23 0.00 0.00 2.24
285 286 7.453752 TGTTTGGATCCTAGAGTTAGTGTTAGT 59.546 37.037 14.23 0.00 0.00 2.24
286 287 7.837863 TGTTTGGATCCTAGAGTTAGTGTTAG 58.162 38.462 14.23 0.00 0.00 2.34
287 288 7.093465 CCTGTTTGGATCCTAGAGTTAGTGTTA 60.093 40.741 14.23 0.00 38.35 2.41
288 289 6.295916 CCTGTTTGGATCCTAGAGTTAGTGTT 60.296 42.308 14.23 0.00 38.35 3.32
289 290 5.187967 CCTGTTTGGATCCTAGAGTTAGTGT 59.812 44.000 14.23 0.00 38.35 3.55
290 291 5.395768 CCCTGTTTGGATCCTAGAGTTAGTG 60.396 48.000 14.23 0.00 38.35 2.74
291 292 4.717280 CCCTGTTTGGATCCTAGAGTTAGT 59.283 45.833 14.23 0.00 38.35 2.24
292 293 4.443598 GCCCTGTTTGGATCCTAGAGTTAG 60.444 50.000 14.23 2.53 38.35 2.34
293 294 3.454812 GCCCTGTTTGGATCCTAGAGTTA 59.545 47.826 14.23 0.00 38.35 2.24
294 295 2.239907 GCCCTGTTTGGATCCTAGAGTT 59.760 50.000 14.23 0.00 38.35 3.01
295 296 1.840635 GCCCTGTTTGGATCCTAGAGT 59.159 52.381 14.23 0.00 38.35 3.24
296 297 1.141858 GGCCCTGTTTGGATCCTAGAG 59.858 57.143 14.23 8.77 38.35 2.43
297 298 1.213296 GGCCCTGTTTGGATCCTAGA 58.787 55.000 14.23 0.00 38.35 2.43
298 299 0.183731 GGGCCCTGTTTGGATCCTAG 59.816 60.000 17.04 6.15 38.35 3.02
299 300 0.253630 AGGGCCCTGTTTGGATCCTA 60.254 55.000 28.05 1.56 36.67 2.94
300 301 0.253630 TAGGGCCCTGTTTGGATCCT 60.254 55.000 35.81 5.66 39.83 3.24
301 302 0.183731 CTAGGGCCCTGTTTGGATCC 59.816 60.000 35.81 4.20 38.35 3.36
302 303 0.919710 ACTAGGGCCCTGTTTGGATC 59.080 55.000 35.81 0.00 38.35 3.36
303 304 1.382914 AACTAGGGCCCTGTTTGGAT 58.617 50.000 35.81 11.63 38.35 3.41
304 305 1.154430 AAACTAGGGCCCTGTTTGGA 58.846 50.000 33.39 17.62 38.35 3.53
305 306 2.443416 GTAAACTAGGGCCCTGTTTGG 58.557 52.381 36.92 24.78 35.77 3.28
306 307 2.443416 GGTAAACTAGGGCCCTGTTTG 58.557 52.381 36.92 26.66 35.77 2.93
307 308 1.356738 GGGTAAACTAGGGCCCTGTTT 59.643 52.381 34.67 34.67 38.12 2.83
308 309 0.997363 GGGTAAACTAGGGCCCTGTT 59.003 55.000 35.81 29.48 38.12 3.16
309 310 2.706034 GGGTAAACTAGGGCCCTGT 58.294 57.895 35.81 25.73 38.12 4.00
312 313 0.622446 TGGAGGGTAAACTAGGGCCC 60.622 60.000 16.46 16.46 41.36 5.80
313 314 0.545171 GTGGAGGGTAAACTAGGGCC 59.455 60.000 0.00 0.00 0.00 5.80
314 315 0.545171 GGTGGAGGGTAAACTAGGGC 59.455 60.000 0.00 0.00 0.00 5.19
315 316 2.117051 GAGGTGGAGGGTAAACTAGGG 58.883 57.143 0.00 0.00 0.00 3.53
316 317 2.766828 CAGAGGTGGAGGGTAAACTAGG 59.233 54.545 0.00 0.00 0.00 3.02
317 318 3.195825 CACAGAGGTGGAGGGTAAACTAG 59.804 52.174 0.00 0.00 41.45 2.57
318 319 3.170717 CACAGAGGTGGAGGGTAAACTA 58.829 50.000 0.00 0.00 41.45 2.24
319 320 1.978580 CACAGAGGTGGAGGGTAAACT 59.021 52.381 0.00 0.00 41.45 2.66
320 321 2.474410 CACAGAGGTGGAGGGTAAAC 57.526 55.000 0.00 0.00 41.45 2.01
350 351 2.745698 CTCACTCCCTGCACTGCA 59.254 61.111 3.11 3.11 36.92 4.41
502 503 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
503 504 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
504 505 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
505 506 4.038642 GTCCTCTCTCTCTCTCTCTCTCTC 59.961 54.167 0.00 0.00 0.00 3.20
644 711 2.203907 AGGAGCCCAGCTGTCAGT 60.204 61.111 13.81 0.00 39.88 3.41
825 892 1.135746 GCAGCAGCAGAGTGAATGAAC 60.136 52.381 0.00 0.00 41.58 3.18
864 934 4.459089 GGAGGTGGGTGAGCGAGC 62.459 72.222 0.00 0.00 0.00 5.03
865 935 2.681778 AGGAGGTGGGTGAGCGAG 60.682 66.667 0.00 0.00 0.00 5.03
869 939 1.197430 AGAAGCAGGAGGTGGGTGAG 61.197 60.000 0.00 0.00 0.00 3.51
1099 1193 0.539518 GAGGAGGAAACAGAGGAGGC 59.460 60.000 0.00 0.00 0.00 4.70
1157 1251 1.079543 CCGAGACTGACAAGGCAGG 60.080 63.158 7.97 0.00 40.20 4.85
1180 1279 0.865769 GGTGTCAAACTAGCACACGG 59.134 55.000 8.12 0.00 41.21 4.94
1199 1298 6.202937 CACTAGTAGCTACTTGAATCTTCCG 58.797 44.000 32.84 12.77 37.73 4.30
1292 1394 4.875544 AGATAAACACACACACACACAC 57.124 40.909 0.00 0.00 0.00 3.82
1293 1395 4.438065 GCAAGATAAACACACACACACACA 60.438 41.667 0.00 0.00 0.00 3.72
1294 1396 4.035017 GCAAGATAAACACACACACACAC 58.965 43.478 0.00 0.00 0.00 3.82
1295 1397 3.691609 TGCAAGATAAACACACACACACA 59.308 39.130 0.00 0.00 0.00 3.72
1296 1398 4.285807 TGCAAGATAAACACACACACAC 57.714 40.909 0.00 0.00 0.00 3.82
1306 1408 4.862574 GGGGACGAAAATTGCAAGATAAAC 59.137 41.667 4.94 0.00 0.00 2.01
1372 1474 6.827251 GGTAAGAAAACCACTAATAAGAGGGG 59.173 42.308 0.00 0.00 46.50 4.79
1675 1777 3.192466 GCATCAACCAATGAGAAATGGC 58.808 45.455 0.00 0.00 42.53 4.40
1731 1833 7.538678 GCCATTATTAATCGAAATAGCAACCAG 59.461 37.037 0.00 0.00 0.00 4.00
1739 1841 6.611381 GCAGCAGCCATTATTAATCGAAATA 58.389 36.000 0.00 0.00 33.58 1.40
1771 1873 3.119096 GCCGACGGTCCTGAAAGC 61.119 66.667 16.73 0.00 0.00 3.51
1924 2026 1.700042 AAATGGTGGCCCGGCAAAAA 61.700 50.000 12.58 0.00 0.00 1.94
2002 2105 2.872245 CACTGAGTTCCAAAAGCTCGAA 59.128 45.455 0.00 0.00 32.32 3.71
2068 2173 1.861982 ACAGCTACCGTATCCCTGTT 58.138 50.000 0.00 0.00 33.29 3.16
2105 2210 5.530543 TGTATTCTTTTGCATGTGACAGACA 59.469 36.000 0.00 0.00 39.53 3.41
2114 2219 9.229784 GTAGATTCACATGTATTCTTTTGCATG 57.770 33.333 0.00 0.00 42.93 4.06
2137 2242 4.022935 TGCACTCAAGGCAAATCAAAGTAG 60.023 41.667 0.00 0.00 38.54 2.57
2141 2246 2.224018 GGTGCACTCAAGGCAAATCAAA 60.224 45.455 17.98 0.00 43.91 2.69
2150 2255 2.857592 GCATTATGGTGCACTCAAGG 57.142 50.000 17.98 10.80 44.43 3.61
2369 2483 6.793492 ATAGTCTGCAGAACAAGAAACTTC 57.207 37.500 20.19 0.78 0.00 3.01
2479 2593 4.464597 AGGGAACACAATCTCTCTACACTC 59.535 45.833 0.00 0.00 0.00 3.51
2526 2640 7.312899 ACAGTTAAAAACTTCAGACAAACTGG 58.687 34.615 14.28 0.41 44.19 4.00
2838 2952 9.499585 CAACATTTCTAGATATTCTGTTGCAAG 57.500 33.333 0.00 0.00 36.64 4.01
2846 2960 9.851686 TTACATGCCAACATTTCTAGATATTCT 57.148 29.630 0.00 0.00 32.87 2.40
3008 3286 3.073062 ACTTGTGTTCTCCATAACCTGCT 59.927 43.478 0.00 0.00 0.00 4.24
3088 3366 7.116376 CGAAGTACTTTTTACTGAAGCAGATGA 59.884 37.037 10.02 0.00 35.18 2.92
3225 3503 7.395190 TGCATTTAGTGATTTGCTACTTGAT 57.605 32.000 0.00 0.00 36.10 2.57
3353 3631 6.153000 ACTCTGTGTATTACTTCCAAGTCGAT 59.847 38.462 0.00 0.00 40.37 3.59
3383 3661 3.181423 TGGGACCAAACCAGAGCTTATTT 60.181 43.478 0.00 0.00 33.23 1.40
3395 3673 0.804989 CAAGCTCGATGGGACCAAAC 59.195 55.000 0.00 0.00 0.00 2.93
3490 3768 2.076100 TGATTTTAGCAGTGCACTCCG 58.924 47.619 18.64 8.25 0.00 4.63
3510 3788 8.962679 TGCATAAAAGGATTTCGGTATAAAAGT 58.037 29.630 0.00 0.00 37.28 2.66
3580 3858 3.260100 ACCAGCAGTCCCTTGGGG 61.260 66.667 5.78 0.00 46.11 4.96
3592 3870 1.212935 ACCATAACTCCCATGACCAGC 59.787 52.381 0.00 0.00 0.00 4.85
3773 4051 4.982241 TCAGATGACCTTCTTTCTTGGT 57.018 40.909 0.00 0.00 36.70 3.67
3861 4139 5.836358 ACCTGACCTACTCAATAGATTCTCC 59.164 44.000 0.00 0.00 31.83 3.71
4000 4278 3.705043 CTGCAAAAGCAAAGAGTGAGT 57.295 42.857 0.00 0.00 0.00 3.41
4140 4418 1.200020 CAAATCGAGGGTTCAGTTGCC 59.800 52.381 0.00 0.00 0.00 4.52
4446 4724 5.655488 AGACAACCATCTTCAGTCTTATCG 58.345 41.667 0.00 0.00 36.21 2.92
4993 5271 5.110598 TCTAACGAGTTACAAACTGTGCAA 58.889 37.500 0.00 0.00 43.03 4.08
5101 5379 4.974721 AAGGCCCAGGTTGCACCG 62.975 66.667 0.00 0.00 44.90 4.94
5200 5478 0.671472 CGACAGCAGCATCCTGAACA 60.671 55.000 0.00 0.00 41.77 3.18
5295 5574 2.022195 CCTCACAAATCATCTGCAGGG 58.978 52.381 15.13 6.93 0.00 4.45
5453 5732 6.421485 AGCTCTAATGATGTGATGACCTTTT 58.579 36.000 0.00 0.00 0.00 2.27
5455 5734 5.627182 AGCTCTAATGATGTGATGACCTT 57.373 39.130 0.00 0.00 0.00 3.50
5456 5735 6.295745 CCATAGCTCTAATGATGTGATGACCT 60.296 42.308 0.00 0.00 0.00 3.85
5488 5793 5.769662 AGGTGTTATCACAAAAATCAGCAGA 59.230 36.000 6.28 0.00 45.45 4.26
5503 5808 7.396540 AGAAATCCATTCAACAGGTGTTATC 57.603 36.000 0.00 0.00 40.72 1.75
5506 5811 6.094048 CGATAGAAATCCATTCAACAGGTGTT 59.906 38.462 0.00 0.00 40.72 3.32
5656 5961 2.609350 TCCAATAACCGTACAAGCGAC 58.391 47.619 0.00 0.00 0.00 5.19
5722 6027 1.963515 ACCAAACCAAGAGGCATGTTC 59.036 47.619 0.00 0.00 39.06 3.18
5807 6112 3.577848 AGCACTTAAATGTTGATTGGCCA 59.422 39.130 0.00 0.00 0.00 5.36
5979 6285 1.390463 GTTAAGACTTTCTGCGGCTCG 59.610 52.381 0.00 0.00 0.00 5.03
5980 6286 1.390463 CGTTAAGACTTTCTGCGGCTC 59.610 52.381 0.00 0.00 0.00 4.70
5981 6287 1.270147 ACGTTAAGACTTTCTGCGGCT 60.270 47.619 0.00 0.00 0.00 5.52
5982 6288 1.136336 CACGTTAAGACTTTCTGCGGC 60.136 52.381 0.00 0.00 0.00 6.53
5983 6289 2.400399 TCACGTTAAGACTTTCTGCGG 58.600 47.619 0.00 0.00 0.00 5.69
6004 6310 0.537188 AGTCCCGTCTTCGATGCATT 59.463 50.000 0.00 0.00 39.71 3.56
6023 6329 9.716531 CCTAACTGATCATTAGCTGAATCAATA 57.283 33.333 14.51 0.00 37.44 1.90
6099 6405 5.446741 CCGTTCGGTACAAAATCCACTAATG 60.447 44.000 2.82 0.00 0.00 1.90
6168 6474 6.424032 AGTTTGAAGAAGACTTACAAAGGGT 58.576 36.000 12.02 0.00 35.77 4.34
6315 6621 1.550327 TTGCTGGACAACACACCAAA 58.450 45.000 0.00 0.00 35.67 3.28
6366 6681 7.565680 AGACGGTAATAGAAGGAACAATCATT 58.434 34.615 0.00 0.00 31.01 2.57
6395 6710 9.238368 ACGGTAATAGAAGGATCATTTCAAAAA 57.762 29.630 10.64 0.00 0.00 1.94
6396 6711 8.801882 ACGGTAATAGAAGGATCATTTCAAAA 57.198 30.769 10.64 0.00 0.00 2.44
6397 6712 8.265055 AGACGGTAATAGAAGGATCATTTCAAA 58.735 33.333 10.64 1.20 0.00 2.69
6398 6713 7.710907 CAGACGGTAATAGAAGGATCATTTCAA 59.289 37.037 10.64 0.00 0.00 2.69
6399 6714 7.210174 CAGACGGTAATAGAAGGATCATTTCA 58.790 38.462 10.64 0.00 0.00 2.69
6400 6715 6.146347 GCAGACGGTAATAGAAGGATCATTTC 59.854 42.308 0.00 0.00 0.00 2.17
6401 6716 5.992217 GCAGACGGTAATAGAAGGATCATTT 59.008 40.000 0.00 0.00 0.00 2.32
6402 6717 5.511545 GGCAGACGGTAATAGAAGGATCATT 60.512 44.000 0.00 0.00 0.00 2.57
6403 6718 4.021016 GGCAGACGGTAATAGAAGGATCAT 60.021 45.833 0.00 0.00 0.00 2.45
6406 6721 3.305720 TGGCAGACGGTAATAGAAGGAT 58.694 45.455 0.00 0.00 0.00 3.24
6420 6735 3.341823 ACAAGACAAGATGATGGCAGAC 58.658 45.455 0.00 0.00 0.00 3.51
6491 6813 7.591426 AGTTCAAAATCAGCGTCACTTATTTTC 59.409 33.333 0.00 0.00 39.21 2.29
6564 6886 6.535150 GGACAAAAGAAAAGAAAAACCCTCTG 59.465 38.462 0.00 0.00 0.00 3.35
6565 6887 6.440647 AGGACAAAAGAAAAGAAAAACCCTCT 59.559 34.615 0.00 0.00 0.00 3.69
6566 6888 6.535150 CAGGACAAAAGAAAAGAAAAACCCTC 59.465 38.462 0.00 0.00 0.00 4.30
6567 6889 6.406370 CAGGACAAAAGAAAAGAAAAACCCT 58.594 36.000 0.00 0.00 0.00 4.34
6568 6890 5.064707 GCAGGACAAAAGAAAAGAAAAACCC 59.935 40.000 0.00 0.00 0.00 4.11
6569 6891 5.220397 CGCAGGACAAAAGAAAAGAAAAACC 60.220 40.000 0.00 0.00 0.00 3.27
6570 6892 5.575218 TCGCAGGACAAAAGAAAAGAAAAAC 59.425 36.000 0.00 0.00 0.00 2.43
6571 6893 5.715070 TCGCAGGACAAAAGAAAAGAAAAA 58.285 33.333 0.00 0.00 0.00 1.94
6572 6894 5.124776 TCTCGCAGGACAAAAGAAAAGAAAA 59.875 36.000 0.00 0.00 0.00 2.29
6573 6895 4.638421 TCTCGCAGGACAAAAGAAAAGAAA 59.362 37.500 0.00 0.00 0.00 2.52
6575 6897 3.804036 TCTCGCAGGACAAAAGAAAAGA 58.196 40.909 0.00 0.00 0.00 2.52
6577 6899 4.974368 TTTCTCGCAGGACAAAAGAAAA 57.026 36.364 0.00 0.00 34.10 2.29
6578 6900 4.578516 TCATTTCTCGCAGGACAAAAGAAA 59.421 37.500 0.00 0.00 39.50 2.52
6579 6901 4.133820 TCATTTCTCGCAGGACAAAAGAA 58.866 39.130 0.00 0.00 0.00 2.52
6581 6903 4.023707 AGTTCATTTCTCGCAGGACAAAAG 60.024 41.667 0.00 0.00 0.00 2.27
6582 6904 3.882888 AGTTCATTTCTCGCAGGACAAAA 59.117 39.130 0.00 0.00 0.00 2.44
6586 10439 2.417719 ACAGTTCATTTCTCGCAGGAC 58.582 47.619 0.00 0.00 0.00 3.85
6610 10463 9.730705 TCATGTGATTTTCTTTCTCTTCTACAT 57.269 29.630 0.00 0.00 0.00 2.29
6698 10551 3.433314 CCAGTTCCATGGATGAAGAGAGG 60.433 52.174 17.06 5.75 43.57 3.69
6699 10552 3.453717 TCCAGTTCCATGGATGAAGAGAG 59.546 47.826 17.06 0.00 44.56 3.20
6755 10609 6.649155 TGGATACTGTACTGCAATGTAATGT 58.351 36.000 0.00 0.00 37.61 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.