Multiple sequence alignment - TraesCS4B01G114500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G114500 chr4B 100.000 8709 0 0 999 9707 130223473 130232181 0.000000e+00 16083
1 TraesCS4B01G114500 chr4B 100.000 385 0 0 1 385 130222475 130222859 0.000000e+00 712
2 TraesCS4B01G114500 chr4A 97.218 3703 67 13 1173 4850 489890136 489886445 0.000000e+00 6235
3 TraesCS4B01G114500 chr4A 97.635 3594 47 14 5122 8708 489886461 489882899 0.000000e+00 6131
4 TraesCS4B01G114500 chr4A 98.143 377 6 1 10 385 489891155 489890779 0.000000e+00 656
5 TraesCS4B01G114500 chr4A 90.051 392 20 6 9330 9707 489882621 489882235 3.150000e-134 490
6 TraesCS4B01G114500 chr4A 99.315 146 1 0 1023 1168 489890391 489890246 2.080000e-66 265
7 TraesCS4B01G114500 chr4D 98.501 3336 46 4 1173 4506 92650995 92654328 0.000000e+00 5880
8 TraesCS4B01G114500 chr4D 98.170 2405 29 9 5321 7719 92654345 92656740 0.000000e+00 4183
9 TraesCS4B01G114500 chr4D 94.926 1084 12 7 7717 8796 92656861 92657905 0.000000e+00 1657
10 TraesCS4B01G114500 chr4D 97.165 388 8 2 1 385 92650218 92650605 0.000000e+00 652
11 TraesCS4B01G114500 chr4D 92.839 391 11 4 9330 9707 92657902 92658288 1.420000e-152 551
12 TraesCS4B01G114500 chr4D 98.450 258 4 0 4851 5108 313597745 313597488 1.150000e-123 455
13 TraesCS4B01G114500 chr4D 98.824 170 2 0 999 1168 92650716 92650885 4.410000e-78 303
14 TraesCS4B01G114500 chr7A 99.625 534 2 0 8796 9329 13451896 13452429 0.000000e+00 976
15 TraesCS4B01G114500 chr7A 97.744 266 4 2 4843 5108 664227985 664228248 3.200000e-124 457
16 TraesCS4B01G114500 chr7A 92.373 118 8 1 8795 8912 29912953 29913069 6.030000e-37 167
17 TraesCS4B01G114500 chr2D 98.837 258 3 0 4851 5108 392544990 392545247 2.470000e-125 460
18 TraesCS4B01G114500 chr2D 97.736 265 5 1 4845 5108 285336198 285335934 1.150000e-123 455
19 TraesCS4B01G114500 chr2D 81.439 264 39 8 7406 7659 58752838 58752575 3.550000e-49 207
20 TraesCS4B01G114500 chrUn 98.450 258 4 0 4851 5108 70285840 70286097 1.150000e-123 455
21 TraesCS4B01G114500 chrUn 90.000 120 11 1 8795 8914 364295225 364295107 4.690000e-33 154
22 TraesCS4B01G114500 chrUn 90.000 120 11 1 8795 8914 454606599 454606717 4.690000e-33 154
23 TraesCS4B01G114500 chr3D 98.092 262 4 1 4848 5108 319743785 319743524 1.150000e-123 455
24 TraesCS4B01G114500 chr1A 98.450 258 4 0 4851 5108 108688893 108689150 1.150000e-123 455
25 TraesCS4B01G114500 chr1A 98.450 258 4 0 4851 5108 396445693 396445950 1.150000e-123 455
26 TraesCS4B01G114500 chr1A 98.450 258 4 0 4851 5108 420384904 420385161 1.150000e-123 455
27 TraesCS4B01G114500 chr3B 88.889 252 22 3 8796 9047 814884968 814884723 1.220000e-78 305
28 TraesCS4B01G114500 chr5D 88.800 250 24 4 7412 7659 540293171 540293418 4.410000e-78 303
29 TraesCS4B01G114500 chr1D 84.362 243 37 1 7406 7647 201311020 201311262 4.530000e-58 237
30 TraesCS4B01G114500 chr7D 92.373 118 8 1 8795 8912 133669926 133670042 6.030000e-37 167
31 TraesCS4B01G114500 chr2B 89.231 130 13 1 8790 8919 284066984 284066856 2.810000e-35 161
32 TraesCS4B01G114500 chr2B 91.453 117 9 1 8796 8912 451956567 451956682 1.010000e-34 159
33 TraesCS4B01G114500 chr2B 89.431 123 12 1 8790 8912 280699390 280699269 4.690000e-33 154
34 TraesCS4B01G114500 chr2B 86.087 115 14 2 7546 7659 37340111 37339998 1.320000e-23 122
35 TraesCS4B01G114500 chr6B 87.611 113 11 1 9116 9225 123260169 123260057 2.850000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G114500 chr4B 130222475 130232181 9706 False 8397.500000 16083 100.0000 1 9707 2 chr4B.!!$F1 9706
1 TraesCS4B01G114500 chr4A 489882235 489891155 8920 True 2755.400000 6235 96.4724 10 9707 5 chr4A.!!$R1 9697
2 TraesCS4B01G114500 chr4D 92650218 92658288 8070 False 2204.333333 5880 96.7375 1 9707 6 chr4D.!!$F1 9706
3 TraesCS4B01G114500 chr7A 13451896 13452429 533 False 976.000000 976 99.6250 8796 9329 1 chr7A.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 239 0.179100 CCGCTCCCACTGACATACTG 60.179 60.000 0.00 0.00 0.00 2.74 F
1170 1174 0.520412 CAAAGTACGCGGCAATTCGG 60.520 55.000 12.47 0.00 0.00 4.30 F
1669 1779 0.038983 TTCGTGACGAATGAGGCGAA 60.039 50.000 17.28 0.00 41.05 4.70 F
3286 3397 1.107538 TAGCTCCGGGATGACTTCCG 61.108 60.000 0.00 0.00 46.52 4.30 F
4956 5091 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49 F
5088 5223 0.026803 CATTCTCCGCACGCTTTAGC 59.973 55.000 0.00 0.00 37.78 3.09 F
5102 5237 0.179468 TTTAGCCGTCCCCTATGCAC 59.821 55.000 0.00 0.00 0.00 4.57 F
5103 5238 0.689745 TTAGCCGTCCCCTATGCACT 60.690 55.000 0.00 0.00 0.00 4.40 F
5117 5252 0.770499 TGCACTGGAGATGAAACCCA 59.230 50.000 0.00 0.00 0.00 4.51 F
5134 5269 1.133482 CCCAAAAGGTCACCAGAACCT 60.133 52.381 0.00 0.00 34.95 3.50 F
5136 5271 2.362077 CCAAAAGGTCACCAGAACCTTG 59.638 50.000 8.23 0.00 42.47 3.61 F
5137 5272 2.362077 CAAAAGGTCACCAGAACCTTGG 59.638 50.000 8.23 1.35 42.47 3.61 F
6188 6326 2.758327 ACATCGTCCCCTAGCGCA 60.758 61.111 11.47 0.00 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1168 1172 0.314302 AATTCTCTCCCGATACGCCG 59.686 55.000 0.00 0.00 0.00 6.46 R
2644 2754 1.620822 CCATAATGCCCCCAACTAGC 58.379 55.000 0.00 0.00 0.00 3.42 R
3522 3636 0.323957 ACTCTTTTCCGGCCACTACC 59.676 55.000 2.24 0.00 0.00 3.18 R
5069 5204 0.026803 GCTAAAGCGTGCGGAGAATG 59.973 55.000 0.00 0.00 0.00 2.67 R
6188 6326 4.537135 ATCTGTCAAGTGTGAATACGGT 57.463 40.909 0.00 0.00 34.87 4.83 R
6744 6882 4.761739 GCAGGCAAATTATATAGAGGCACA 59.238 41.667 0.00 0.00 0.00 4.57 R
6984 7122 4.973396 TGACTTGCGCAGAAATATCAAAG 58.027 39.130 11.31 3.19 0.00 2.77 R
7516 7657 0.687757 TATCGCTGGCTGGGTCTCTT 60.688 55.000 8.24 0.00 0.00 2.85 R
7740 8005 7.996098 TTTATATTGGACCCTAGCAATTAGC 57.004 36.000 0.00 0.00 46.19 3.09 R
7743 8008 8.782137 ACATTTTATATTGGACCCTAGCAATT 57.218 30.769 0.00 0.00 0.00 2.32 R
7744 8009 8.782137 AACATTTTATATTGGACCCTAGCAAT 57.218 30.769 0.00 0.00 0.00 3.56 R
7745 8010 9.127277 GTAACATTTTATATTGGACCCTAGCAA 57.873 33.333 0.00 0.00 0.00 3.91 R
8712 8980 1.066752 GGGCGAAACACCAACCAAC 59.933 57.895 0.00 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.519408 GTGATGGCAAGTACGTTGGT 58.481 50.000 0.00 0.00 36.56 3.67
236 239 0.179100 CCGCTCCCACTGACATACTG 60.179 60.000 0.00 0.00 0.00 2.74
1168 1172 2.637155 GCAAAGTACGCGGCAATTC 58.363 52.632 12.47 0.00 0.00 2.17
1169 1173 1.125847 GCAAAGTACGCGGCAATTCG 61.126 55.000 12.47 0.00 0.00 3.34
1170 1174 0.520412 CAAAGTACGCGGCAATTCGG 60.520 55.000 12.47 0.00 0.00 4.30
1171 1175 2.248274 AAAGTACGCGGCAATTCGGC 62.248 55.000 12.47 0.00 37.63 5.54
1295 1405 2.474816 CCGGATAACTAGAGCTTGTGC 58.525 52.381 0.00 0.00 40.05 4.57
1297 1407 2.223502 CGGATAACTAGAGCTTGTGCGA 60.224 50.000 0.00 0.00 45.42 5.10
1407 1517 4.517453 TGATTTGGTTACTGCTTTTAGCGT 59.483 37.500 0.00 0.00 46.26 5.07
1502 1612 9.982291 TCTTAAATTTGTGCGATACTGTATTTC 57.018 29.630 0.00 0.00 0.00 2.17
1531 1641 8.446273 CAAGTCGTTTGATGAATCTCTAAATGT 58.554 33.333 0.00 0.00 39.21 2.71
1657 1767 7.705325 ACCTATATACAACAATCTGTTCGTGAC 59.295 37.037 0.00 0.00 38.77 3.67
1667 1777 4.162640 TTCGTGACGAATGAGGCG 57.837 55.556 17.28 0.00 41.05 5.52
1669 1779 0.038983 TTCGTGACGAATGAGGCGAA 60.039 50.000 17.28 0.00 41.05 4.70
1755 1865 7.340232 TCAGCCTATTTTATTGACAAGCAAGAT 59.660 33.333 0.00 0.00 40.42 2.40
1820 1930 8.735692 TCATGCAACTATTGATTTCTACATCA 57.264 30.769 0.00 0.00 0.00 3.07
2644 2754 6.301169 AGTGGGTTATAGGTTCTTCAAGAG 57.699 41.667 0.00 0.00 0.00 2.85
2704 2814 2.012673 GATGCACAGAGTCCATTGGTC 58.987 52.381 1.86 0.00 0.00 4.02
3025 3136 8.983702 TTGGTTAACTAGATGTAACCTTGTTT 57.016 30.769 23.16 0.00 41.72 2.83
3104 3215 8.581057 AGTTATGTGAACGAGCTAATTATCTG 57.419 34.615 0.00 0.00 0.00 2.90
3286 3397 1.107538 TAGCTCCGGGATGACTTCCG 61.108 60.000 0.00 0.00 46.52 4.30
3639 3753 3.319122 GGAATGCTCAGTCCACTTTTGTT 59.681 43.478 11.07 0.00 44.42 2.83
3824 3938 3.129287 AGCTTAAATGCAAGGACCATTCG 59.871 43.478 0.00 0.00 32.07 3.34
3919 4033 3.499338 AGTTTTGCTGATCCCATCACAA 58.501 40.909 0.00 0.00 35.06 3.33
4195 4309 7.171630 TCTACTCCCTCTGTCTTACATTTTC 57.828 40.000 0.00 0.00 0.00 2.29
4213 4327 2.136298 TCAGACAGAGGGAGTAGCTG 57.864 55.000 0.00 0.00 35.81 4.24
4301 4417 9.116067 TCATTACCTAAGTAACCATTGTTATGC 57.884 33.333 0.00 0.00 41.19 3.14
4414 4530 6.434652 TGAGAATTGGCTACCGGATTTAAAAA 59.565 34.615 9.46 0.00 0.00 1.94
4715 4849 2.014068 GCAGCTCTCCCACACCATTAC 61.014 57.143 0.00 0.00 0.00 1.89
4719 4853 1.628340 CTCTCCCACACCATTACACCA 59.372 52.381 0.00 0.00 0.00 4.17
4850 4985 1.966451 CGGTCACCAGAACCTTGGC 60.966 63.158 0.00 0.00 42.18 4.52
4851 4986 1.150536 GGTCACCAGAACCTTGGCA 59.849 57.895 0.00 0.00 42.18 4.92
4852 4987 0.467290 GGTCACCAGAACCTTGGCAA 60.467 55.000 0.00 0.00 42.18 4.52
4853 4988 0.668535 GTCACCAGAACCTTGGCAAC 59.331 55.000 0.00 0.00 42.18 4.17
4869 5004 4.064137 GGCAACAACAACAACAACAAAG 57.936 40.909 0.00 0.00 0.00 2.77
4870 5005 3.478063 GCAACAACAACAACAACAAAGC 58.522 40.909 0.00 0.00 0.00 3.51
4871 5006 3.666638 GCAACAACAACAACAACAAAGCC 60.667 43.478 0.00 0.00 0.00 4.35
4872 5007 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
4873 5008 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
4874 5009 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
4875 5010 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
4876 5011 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
4877 5012 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
4878 5013 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
4879 5014 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
4880 5015 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
4881 5016 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
4882 5017 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
4883 5018 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
4884 5019 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
4885 5020 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
4886 5021 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
4887 5022 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
4888 5023 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
4889 5024 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
4890 5025 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
4899 5034 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
4900 5035 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
4901 5036 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
4902 5037 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
4903 5038 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
4904 5039 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
4905 5040 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
4906 5041 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
4907 5042 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
4908 5043 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
4909 5044 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
4910 5045 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
4925 5060 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
4926 5061 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
4927 5062 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
4928 5063 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
4929 5064 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
4930 5065 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
4931 5066 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
4932 5067 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
4933 5068 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
4934 5069 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
4935 5070 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
4936 5071 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
4944 5079 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
4945 5080 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
4946 5081 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
4947 5082 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
4948 5083 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
4949 5084 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
4950 5085 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
4951 5086 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
4952 5087 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
4953 5088 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
4954 5089 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
4955 5090 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
4956 5091 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
4957 5092 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
4958 5093 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
4959 5094 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
4960 5095 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
4961 5096 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
4962 5097 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
4963 5098 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
4964 5099 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
4965 5100 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
4966 5101 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
4967 5102 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
4968 5103 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
4969 5104 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
4970 5105 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
4971 5106 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
4972 5107 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
4973 5108 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
4974 5109 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
4975 5110 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
4976 5111 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
4977 5112 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
4979 5114 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
4980 5115 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
4981 5116 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
4982 5117 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
4983 5118 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
4984 5119 1.399744 CGCACCCCTGTCCATAGCTA 61.400 60.000 0.00 0.00 0.00 3.32
4985 5120 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
4986 5121 0.394565 CACCCCTGTCCATAGCTAGC 59.605 60.000 6.62 6.62 0.00 3.42
4987 5122 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32
4988 5123 0.972883 CCCCTGTCCATAGCTAGCTC 59.027 60.000 23.26 7.00 0.00 4.09
4989 5124 1.482177 CCCCTGTCCATAGCTAGCTCT 60.482 57.143 23.26 9.05 0.00 4.09
4990 5125 2.324541 CCCTGTCCATAGCTAGCTCTT 58.675 52.381 23.26 7.47 0.00 2.85
4991 5126 2.703007 CCCTGTCCATAGCTAGCTCTTT 59.297 50.000 23.26 4.57 0.00 2.52
4992 5127 3.494048 CCCTGTCCATAGCTAGCTCTTTG 60.494 52.174 23.26 16.78 0.00 2.77
4993 5128 3.494048 CCTGTCCATAGCTAGCTCTTTGG 60.494 52.174 23.26 24.37 36.78 3.28
4994 5129 3.107601 TGTCCATAGCTAGCTCTTTGGT 58.892 45.455 27.50 8.05 36.79 3.67
4995 5130 3.118629 TGTCCATAGCTAGCTCTTTGGTG 60.119 47.826 27.50 16.61 36.79 4.17
4996 5131 3.133003 GTCCATAGCTAGCTCTTTGGTGA 59.867 47.826 27.50 15.24 36.79 4.02
4997 5132 3.969976 TCCATAGCTAGCTCTTTGGTGAT 59.030 43.478 27.50 12.14 36.79 3.06
4998 5133 5.011125 GTCCATAGCTAGCTCTTTGGTGATA 59.989 44.000 27.50 14.48 36.79 2.15
4999 5134 5.011125 TCCATAGCTAGCTCTTTGGTGATAC 59.989 44.000 27.50 0.00 36.79 2.24
5000 5135 5.011533 CCATAGCTAGCTCTTTGGTGATACT 59.988 44.000 23.26 0.00 32.65 2.12
5001 5136 4.664150 AGCTAGCTCTTTGGTGATACTC 57.336 45.455 12.68 0.00 0.00 2.59
5002 5137 3.386402 AGCTAGCTCTTTGGTGATACTCC 59.614 47.826 12.68 0.00 0.00 3.85
5003 5138 3.133003 GCTAGCTCTTTGGTGATACTCCA 59.867 47.826 7.70 0.00 0.00 3.86
5004 5139 4.383118 GCTAGCTCTTTGGTGATACTCCAA 60.383 45.833 7.70 0.00 42.29 3.53
5005 5140 4.851639 AGCTCTTTGGTGATACTCCAAT 57.148 40.909 6.20 0.00 43.25 3.16
5006 5141 4.775236 AGCTCTTTGGTGATACTCCAATC 58.225 43.478 6.20 0.00 43.25 2.67
5007 5142 3.879892 GCTCTTTGGTGATACTCCAATCC 59.120 47.826 6.20 0.00 43.25 3.01
5008 5143 4.384647 GCTCTTTGGTGATACTCCAATCCT 60.385 45.833 6.20 0.00 43.25 3.24
5009 5144 5.749462 CTCTTTGGTGATACTCCAATCCTT 58.251 41.667 6.20 0.00 43.25 3.36
5010 5145 5.745227 TCTTTGGTGATACTCCAATCCTTC 58.255 41.667 6.20 0.00 43.25 3.46
5011 5146 5.250543 TCTTTGGTGATACTCCAATCCTTCA 59.749 40.000 6.20 0.00 43.25 3.02
5012 5147 4.760530 TGGTGATACTCCAATCCTTCAG 57.239 45.455 0.00 0.00 31.50 3.02
5013 5148 3.455910 TGGTGATACTCCAATCCTTCAGG 59.544 47.826 0.00 0.00 31.50 3.86
5014 5149 3.456277 GGTGATACTCCAATCCTTCAGGT 59.544 47.826 0.00 0.00 36.34 4.00
5015 5150 4.443598 GGTGATACTCCAATCCTTCAGGTC 60.444 50.000 0.00 0.00 36.34 3.85
5016 5151 4.407296 GTGATACTCCAATCCTTCAGGTCT 59.593 45.833 0.00 0.00 36.34 3.85
5017 5152 4.651503 TGATACTCCAATCCTTCAGGTCTC 59.348 45.833 0.00 0.00 36.34 3.36
5018 5153 3.197927 ACTCCAATCCTTCAGGTCTCT 57.802 47.619 0.00 0.00 36.34 3.10
5019 5154 3.103742 ACTCCAATCCTTCAGGTCTCTC 58.896 50.000 0.00 0.00 36.34 3.20
5020 5155 3.245948 ACTCCAATCCTTCAGGTCTCTCT 60.246 47.826 0.00 0.00 36.34 3.10
5021 5156 3.774216 CTCCAATCCTTCAGGTCTCTCTT 59.226 47.826 0.00 0.00 36.34 2.85
5022 5157 4.947883 TCCAATCCTTCAGGTCTCTCTTA 58.052 43.478 0.00 0.00 36.34 2.10
5023 5158 5.342017 TCCAATCCTTCAGGTCTCTCTTAA 58.658 41.667 0.00 0.00 36.34 1.85
5024 5159 5.187967 TCCAATCCTTCAGGTCTCTCTTAAC 59.812 44.000 0.00 0.00 36.34 2.01
5025 5160 4.993029 ATCCTTCAGGTCTCTCTTAACG 57.007 45.455 0.00 0.00 36.34 3.18
5026 5161 3.090037 TCCTTCAGGTCTCTCTTAACGG 58.910 50.000 0.00 0.00 36.34 4.44
5027 5162 3.090037 CCTTCAGGTCTCTCTTAACGGA 58.910 50.000 0.00 0.00 0.00 4.69
5028 5163 3.119424 CCTTCAGGTCTCTCTTAACGGAC 60.119 52.174 0.00 0.00 0.00 4.79
5029 5164 3.436577 TCAGGTCTCTCTTAACGGACT 57.563 47.619 0.00 0.00 0.00 3.85
5030 5165 3.345414 TCAGGTCTCTCTTAACGGACTC 58.655 50.000 0.00 0.00 0.00 3.36
5031 5166 2.424246 CAGGTCTCTCTTAACGGACTCC 59.576 54.545 0.00 0.00 0.00 3.85
5032 5167 2.309458 AGGTCTCTCTTAACGGACTCCT 59.691 50.000 0.00 0.00 0.00 3.69
5033 5168 2.684374 GGTCTCTCTTAACGGACTCCTC 59.316 54.545 0.00 0.00 0.00 3.71
5034 5169 2.684374 GTCTCTCTTAACGGACTCCTCC 59.316 54.545 0.00 0.00 0.00 4.30
5035 5170 2.025898 CTCTCTTAACGGACTCCTCCC 58.974 57.143 0.00 0.00 31.93 4.30
5036 5171 1.356738 TCTCTTAACGGACTCCTCCCA 59.643 52.381 0.00 0.00 31.93 4.37
5037 5172 2.024273 TCTCTTAACGGACTCCTCCCAT 60.024 50.000 0.00 0.00 31.93 4.00
5038 5173 2.101582 CTCTTAACGGACTCCTCCCATG 59.898 54.545 0.00 0.00 31.93 3.66
5039 5174 1.831736 CTTAACGGACTCCTCCCATGT 59.168 52.381 0.00 0.00 31.93 3.21
5040 5175 1.481871 TAACGGACTCCTCCCATGTC 58.518 55.000 0.00 0.00 31.93 3.06
5041 5176 0.544357 AACGGACTCCTCCCATGTCA 60.544 55.000 0.00 0.00 31.93 3.58
5042 5177 0.544357 ACGGACTCCTCCCATGTCAA 60.544 55.000 0.00 0.00 31.93 3.18
5043 5178 0.613260 CGGACTCCTCCCATGTCAAA 59.387 55.000 0.00 0.00 31.93 2.69
5044 5179 1.210478 CGGACTCCTCCCATGTCAAAT 59.790 52.381 0.00 0.00 31.93 2.32
5045 5180 2.356125 CGGACTCCTCCCATGTCAAATT 60.356 50.000 0.00 0.00 31.93 1.82
5046 5181 3.282885 GGACTCCTCCCATGTCAAATTC 58.717 50.000 0.00 0.00 32.84 2.17
5047 5182 2.939103 GACTCCTCCCATGTCAAATTCG 59.061 50.000 0.00 0.00 0.00 3.34
5048 5183 2.292267 CTCCTCCCATGTCAAATTCGG 58.708 52.381 0.00 0.00 0.00 4.30
5049 5184 1.633432 TCCTCCCATGTCAAATTCGGT 59.367 47.619 0.00 0.00 0.00 4.69
5050 5185 2.017049 CCTCCCATGTCAAATTCGGTC 58.983 52.381 0.00 0.00 0.00 4.79
5051 5186 2.356125 CCTCCCATGTCAAATTCGGTCT 60.356 50.000 0.00 0.00 0.00 3.85
5052 5187 3.118408 CCTCCCATGTCAAATTCGGTCTA 60.118 47.826 0.00 0.00 0.00 2.59
5053 5188 3.869065 TCCCATGTCAAATTCGGTCTAC 58.131 45.455 0.00 0.00 0.00 2.59
5054 5189 3.262151 TCCCATGTCAAATTCGGTCTACA 59.738 43.478 0.00 0.00 0.00 2.74
5055 5190 3.623060 CCCATGTCAAATTCGGTCTACAG 59.377 47.826 0.00 0.00 0.00 2.74
5056 5191 3.063997 CCATGTCAAATTCGGTCTACAGC 59.936 47.826 0.00 0.00 0.00 4.40
5057 5192 3.394674 TGTCAAATTCGGTCTACAGCA 57.605 42.857 0.00 0.00 0.00 4.41
5058 5193 3.064207 TGTCAAATTCGGTCTACAGCAC 58.936 45.455 0.00 0.00 0.00 4.40
5059 5194 2.415512 GTCAAATTCGGTCTACAGCACC 59.584 50.000 0.00 0.00 0.00 5.01
5060 5195 1.737793 CAAATTCGGTCTACAGCACCC 59.262 52.381 0.00 0.00 0.00 4.61
5061 5196 1.276622 AATTCGGTCTACAGCACCCT 58.723 50.000 0.00 0.00 0.00 4.34
5062 5197 0.824759 ATTCGGTCTACAGCACCCTC 59.175 55.000 0.00 0.00 0.00 4.30
5063 5198 0.251653 TTCGGTCTACAGCACCCTCT 60.252 55.000 0.00 0.00 0.00 3.69
5064 5199 0.680280 TCGGTCTACAGCACCCTCTC 60.680 60.000 0.00 0.00 0.00 3.20
5065 5200 0.681564 CGGTCTACAGCACCCTCTCT 60.682 60.000 0.00 0.00 0.00 3.10
5066 5201 1.562783 GGTCTACAGCACCCTCTCTT 58.437 55.000 0.00 0.00 0.00 2.85
5067 5202 1.205893 GGTCTACAGCACCCTCTCTTG 59.794 57.143 0.00 0.00 0.00 3.02
5068 5203 2.171840 GTCTACAGCACCCTCTCTTGA 58.828 52.381 0.00 0.00 0.00 3.02
5069 5204 2.094442 GTCTACAGCACCCTCTCTTGAC 60.094 54.545 0.00 0.00 0.00 3.18
5070 5205 1.895798 CTACAGCACCCTCTCTTGACA 59.104 52.381 0.00 0.00 0.00 3.58
5071 5206 1.356124 ACAGCACCCTCTCTTGACAT 58.644 50.000 0.00 0.00 0.00 3.06
5072 5207 1.701847 ACAGCACCCTCTCTTGACATT 59.298 47.619 0.00 0.00 0.00 2.71
5073 5208 2.289945 ACAGCACCCTCTCTTGACATTC 60.290 50.000 0.00 0.00 0.00 2.67
5074 5209 2.027377 CAGCACCCTCTCTTGACATTCT 60.027 50.000 0.00 0.00 0.00 2.40
5075 5210 2.235898 AGCACCCTCTCTTGACATTCTC 59.764 50.000 0.00 0.00 0.00 2.87
5076 5211 2.679349 GCACCCTCTCTTGACATTCTCC 60.679 54.545 0.00 0.00 0.00 3.71
5077 5212 1.827969 ACCCTCTCTTGACATTCTCCG 59.172 52.381 0.00 0.00 0.00 4.63
5078 5213 1.472376 CCCTCTCTTGACATTCTCCGC 60.472 57.143 0.00 0.00 0.00 5.54
5079 5214 1.205655 CCTCTCTTGACATTCTCCGCA 59.794 52.381 0.00 0.00 0.00 5.69
5080 5215 2.266554 CTCTCTTGACATTCTCCGCAC 58.733 52.381 0.00 0.00 0.00 5.34
5081 5216 0.994995 CTCTTGACATTCTCCGCACG 59.005 55.000 0.00 0.00 0.00 5.34
5082 5217 1.014044 TCTTGACATTCTCCGCACGC 61.014 55.000 0.00 0.00 0.00 5.34
5083 5218 1.005037 TTGACATTCTCCGCACGCT 60.005 52.632 0.00 0.00 0.00 5.07
5084 5219 0.602638 TTGACATTCTCCGCACGCTT 60.603 50.000 0.00 0.00 0.00 4.68
5085 5220 0.602638 TGACATTCTCCGCACGCTTT 60.603 50.000 0.00 0.00 0.00 3.51
5086 5221 1.337354 TGACATTCTCCGCACGCTTTA 60.337 47.619 0.00 0.00 0.00 1.85
5087 5222 1.324736 GACATTCTCCGCACGCTTTAG 59.675 52.381 0.00 0.00 0.00 1.85
5088 5223 0.026803 CATTCTCCGCACGCTTTAGC 59.973 55.000 0.00 0.00 37.78 3.09
5089 5224 1.090052 ATTCTCCGCACGCTTTAGCC 61.090 55.000 0.00 0.00 37.91 3.93
5090 5225 3.554692 CTCCGCACGCTTTAGCCG 61.555 66.667 0.00 0.00 37.91 5.52
5091 5226 4.367023 TCCGCACGCTTTAGCCGT 62.367 61.111 0.00 0.00 37.91 5.68
5092 5227 3.849953 CCGCACGCTTTAGCCGTC 61.850 66.667 0.00 0.00 37.91 4.79
5093 5228 3.849953 CGCACGCTTTAGCCGTCC 61.850 66.667 0.00 0.00 37.91 4.79
5094 5229 3.497031 GCACGCTTTAGCCGTCCC 61.497 66.667 0.00 0.00 37.91 4.46
5095 5230 2.818274 CACGCTTTAGCCGTCCCC 60.818 66.667 0.00 0.00 37.91 4.81
5096 5231 3.001406 ACGCTTTAGCCGTCCCCT 61.001 61.111 0.00 0.00 37.91 4.79
5097 5232 1.683365 ACGCTTTAGCCGTCCCCTA 60.683 57.895 0.00 0.00 37.91 3.53
5098 5233 1.047034 ACGCTTTAGCCGTCCCCTAT 61.047 55.000 0.00 0.00 37.91 2.57
5099 5234 0.600255 CGCTTTAGCCGTCCCCTATG 60.600 60.000 0.00 0.00 37.91 2.23
5100 5235 0.885150 GCTTTAGCCGTCCCCTATGC 60.885 60.000 0.00 0.00 34.31 3.14
5101 5236 0.468226 CTTTAGCCGTCCCCTATGCA 59.532 55.000 0.00 0.00 0.00 3.96
5102 5237 0.179468 TTTAGCCGTCCCCTATGCAC 59.821 55.000 0.00 0.00 0.00 4.57
5103 5238 0.689745 TTAGCCGTCCCCTATGCACT 60.690 55.000 0.00 0.00 0.00 4.40
5104 5239 1.399744 TAGCCGTCCCCTATGCACTG 61.400 60.000 0.00 0.00 0.00 3.66
5105 5240 2.505982 CCGTCCCCTATGCACTGG 59.494 66.667 0.00 0.00 0.00 4.00
5106 5241 2.063979 CCGTCCCCTATGCACTGGA 61.064 63.158 8.26 0.16 0.00 3.86
5107 5242 1.443407 CGTCCCCTATGCACTGGAG 59.557 63.158 8.26 0.00 0.00 3.86
5108 5243 1.043116 CGTCCCCTATGCACTGGAGA 61.043 60.000 8.26 0.00 0.00 3.71
5109 5244 1.428869 GTCCCCTATGCACTGGAGAT 58.571 55.000 8.26 0.00 0.00 2.75
5110 5245 1.071385 GTCCCCTATGCACTGGAGATG 59.929 57.143 8.26 0.00 0.00 2.90
5111 5246 1.062198 TCCCCTATGCACTGGAGATGA 60.062 52.381 8.26 0.00 0.00 2.92
5112 5247 1.770658 CCCCTATGCACTGGAGATGAA 59.229 52.381 8.26 0.00 0.00 2.57
5113 5248 2.173356 CCCCTATGCACTGGAGATGAAA 59.827 50.000 8.26 0.00 0.00 2.69
5114 5249 3.209410 CCCTATGCACTGGAGATGAAAC 58.791 50.000 8.26 0.00 0.00 2.78
5115 5250 3.209410 CCTATGCACTGGAGATGAAACC 58.791 50.000 0.78 0.00 0.00 3.27
5116 5251 2.134789 ATGCACTGGAGATGAAACCC 57.865 50.000 0.00 0.00 0.00 4.11
5117 5252 0.770499 TGCACTGGAGATGAAACCCA 59.230 50.000 0.00 0.00 0.00 4.51
5118 5253 1.144708 TGCACTGGAGATGAAACCCAA 59.855 47.619 0.00 0.00 0.00 4.12
5119 5254 2.238521 GCACTGGAGATGAAACCCAAA 58.761 47.619 0.00 0.00 0.00 3.28
5120 5255 2.627699 GCACTGGAGATGAAACCCAAAA 59.372 45.455 0.00 0.00 0.00 2.44
5121 5256 3.305608 GCACTGGAGATGAAACCCAAAAG 60.306 47.826 0.00 0.00 0.00 2.27
5122 5257 3.256631 CACTGGAGATGAAACCCAAAAGG 59.743 47.826 0.00 0.00 43.78 3.11
5133 5268 1.328279 CCCAAAAGGTCACCAGAACC 58.672 55.000 0.00 0.00 29.15 3.62
5134 5269 1.133482 CCCAAAAGGTCACCAGAACCT 60.133 52.381 0.00 0.00 34.95 3.50
5135 5270 2.666317 CCAAAAGGTCACCAGAACCTT 58.334 47.619 0.00 1.73 44.92 3.50
5136 5271 2.362077 CCAAAAGGTCACCAGAACCTTG 59.638 50.000 8.23 0.00 42.47 3.61
5137 5272 2.362077 CAAAAGGTCACCAGAACCTTGG 59.638 50.000 8.23 1.35 42.47 3.61
5212 5347 9.757227 AACTACTTTGCATGTTGCTTTAAATAA 57.243 25.926 0.75 0.00 45.31 1.40
5259 5394 2.774234 ACATGCCTAGCTGTTGTATCCT 59.226 45.455 0.00 0.00 0.00 3.24
5260 5395 3.967326 ACATGCCTAGCTGTTGTATCCTA 59.033 43.478 0.00 0.00 0.00 2.94
5267 5402 6.572703 GCCTAGCTGTTGTATCCTATACCTTC 60.573 46.154 0.00 0.00 0.00 3.46
5334 5469 5.061179 AGCCGTATTTTACTCAAGTTGTGT 58.939 37.500 14.48 14.48 0.00 3.72
5493 5628 8.040727 TGAACAGCTTTGAAATAGCTCAGTATA 58.959 33.333 0.00 0.00 45.52 1.47
5909 6046 8.006741 CACATAATTTTGTGTTACTTTCCTGC 57.993 34.615 17.81 0.00 41.65 4.85
6047 6185 9.605955 TTTCACAATTATGAACTCGTGTATTTG 57.394 29.630 0.00 0.00 38.31 2.32
6188 6326 2.758327 ACATCGTCCCCTAGCGCA 60.758 61.111 11.47 0.00 0.00 6.09
6379 6517 3.173953 TGAATTGAGCAATGGAGGGTT 57.826 42.857 0.00 0.00 0.00 4.11
6575 6713 9.956720 CTATATTTAAGTCAAATTGCAGGGAAG 57.043 33.333 0.00 0.00 37.93 3.46
6781 6919 6.986904 ATTTGCCTGCTAGTTTTCTACTAC 57.013 37.500 0.00 0.00 38.33 2.73
6981 7119 5.776716 AGATATGCCATTGTTTATTCAGGGG 59.223 40.000 0.00 0.00 0.00 4.79
6984 7122 3.513515 TGCCATTGTTTATTCAGGGGTTC 59.486 43.478 0.00 0.00 0.00 3.62
7639 7781 5.659463 TGGGATTGCATGCAAAACTAATAC 58.341 37.500 34.84 18.93 39.55 1.89
7924 8189 0.107017 CCCTCTGGCCTAATGGTGTG 60.107 60.000 3.32 0.00 35.27 3.82
8030 8295 0.662619 TGGCAACAGAAAGAGCAACG 59.337 50.000 0.00 0.00 46.17 4.10
8212 8477 7.649370 ATTCAGATATGTGATAGAAGCAACG 57.351 36.000 3.00 0.00 0.00 4.10
8429 8694 6.704289 TGTCATTCTGATTTCCATGATTCC 57.296 37.500 0.00 0.00 0.00 3.01
8498 8763 4.682787 CGATGATAGAACAGGTGCTTGTA 58.317 43.478 0.00 0.00 0.00 2.41
8616 8881 4.355437 GTGAGAGACCATCTTGATACACG 58.645 47.826 0.00 0.00 38.84 4.49
8712 8980 3.117452 GCAGAGCTGGATCCAGGGG 62.117 68.421 36.92 18.26 43.77 4.79
8723 8991 2.606449 CCAGGGGTTGGTTGGTGT 59.394 61.111 0.00 0.00 42.41 4.16
8724 8992 1.075600 CCAGGGGTTGGTTGGTGTT 60.076 57.895 0.00 0.00 42.41 3.32
8725 8993 0.689412 CCAGGGGTTGGTTGGTGTTT 60.689 55.000 0.00 0.00 42.41 2.83
8727 8995 0.753848 AGGGGTTGGTTGGTGTTTCG 60.754 55.000 0.00 0.00 0.00 3.46
8729 8997 1.066752 GGTTGGTTGGTGTTTCGCC 59.933 57.895 0.00 0.00 34.12 5.54
8730 8998 1.066752 GTTGGTTGGTGTTTCGCCC 59.933 57.895 0.00 0.00 32.22 6.13
8731 8999 2.128507 TTGGTTGGTGTTTCGCCCC 61.129 57.895 0.00 0.00 32.22 5.80
8732 9000 3.299977 GGTTGGTGTTTCGCCCCC 61.300 66.667 0.00 0.00 32.22 5.40
8912 9374 6.834168 GGTTCATTTCCTGTAAAGGAATCA 57.166 37.500 15.44 1.70 46.21 2.57
9096 9558 5.405571 CCGCTGCGACTGACTTATTATTAAT 59.594 40.000 25.45 0.00 0.00 1.40
9463 9926 2.224314 GGCTTGTAAGTTGTGCAGAGAC 59.776 50.000 0.00 0.00 0.00 3.36
9584 10060 5.541845 TGGTGTATCTCTGTGACTGAAAAG 58.458 41.667 0.00 0.00 0.00 2.27
9589 10065 7.011482 GTGTATCTCTGTGACTGAAAAGTGTTT 59.989 37.037 0.00 0.00 0.00 2.83
9604 10080 0.970937 TGTTTGGCCCGTTTGGAACA 60.971 50.000 0.00 0.00 37.49 3.18
9633 10109 7.284489 TGAATTTTACTGGTGTGTAGCTCTTTT 59.716 33.333 0.00 0.00 0.00 2.27
9654 10130 0.179065 CTGCCGCATGAGATGGAGAA 60.179 55.000 0.00 0.00 0.00 2.87
9655 10131 0.179065 TGCCGCATGAGATGGAGAAG 60.179 55.000 0.00 0.00 0.00 2.85
9656 10132 0.883814 GCCGCATGAGATGGAGAAGG 60.884 60.000 0.00 0.00 0.00 3.46
9657 10133 0.467384 CCGCATGAGATGGAGAAGGT 59.533 55.000 0.00 0.00 0.00 3.50
9658 10134 1.539929 CCGCATGAGATGGAGAAGGTC 60.540 57.143 0.00 0.00 0.00 3.85
9661 10137 2.170187 GCATGAGATGGAGAAGGTCTGT 59.830 50.000 0.00 0.00 0.00 3.41
9662 10138 3.370315 GCATGAGATGGAGAAGGTCTGTT 60.370 47.826 0.00 0.00 0.00 3.16
9663 10139 3.969287 TGAGATGGAGAAGGTCTGTTG 57.031 47.619 0.00 0.00 0.00 3.33
9678 10154 2.280524 TTGCTGTGTTCCGGACGG 60.281 61.111 1.83 3.96 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.526954 CGCATCATTTGGAGCAAGGC 60.527 55.000 0.00 0.00 0.00 4.35
236 239 4.365111 TGGCTGGCATGTGGACCC 62.365 66.667 0.00 0.00 0.00 4.46
1168 1172 0.314302 AATTCTCTCCCGATACGCCG 59.686 55.000 0.00 0.00 0.00 6.46
1169 1173 2.135933 CAAATTCTCTCCCGATACGCC 58.864 52.381 0.00 0.00 0.00 5.68
1170 1174 2.135933 CCAAATTCTCTCCCGATACGC 58.864 52.381 0.00 0.00 0.00 4.42
1171 1175 2.102588 ACCCAAATTCTCTCCCGATACG 59.897 50.000 0.00 0.00 0.00 3.06
1172 1176 3.467803 CACCCAAATTCTCTCCCGATAC 58.532 50.000 0.00 0.00 0.00 2.24
1173 1177 2.438021 CCACCCAAATTCTCTCCCGATA 59.562 50.000 0.00 0.00 0.00 2.92
1174 1178 1.212935 CCACCCAAATTCTCTCCCGAT 59.787 52.381 0.00 0.00 0.00 4.18
1473 1583 9.935682 ATACAGTATCGCACAAATTTAAGATTG 57.064 29.630 0.00 1.91 0.00 2.67
1531 1641 4.323485 CCAACCACTACTTCCATTCTAGCA 60.323 45.833 0.00 0.00 0.00 3.49
1657 1767 1.871080 AGCCTATTTCGCCTCATTCG 58.129 50.000 0.00 0.00 0.00 3.34
1667 1777 7.880195 TCATAGGAAATGCTAGAAGCCTATTTC 59.120 37.037 12.70 12.70 41.51 2.17
1669 1779 7.017056 ACTCATAGGAAATGCTAGAAGCCTATT 59.983 37.037 6.79 0.00 41.51 1.73
1820 1930 2.292267 CGCAAGATGGGAGCTACAAAT 58.708 47.619 0.00 0.00 43.02 2.32
2436 2546 6.350696 CCATGACATCAACACCAATTTCAGAT 60.351 38.462 0.00 0.00 0.00 2.90
2644 2754 1.620822 CCATAATGCCCCCAACTAGC 58.379 55.000 0.00 0.00 0.00 3.42
2672 2782 2.074576 CTGTGCATCTTGTGGTCTCAG 58.925 52.381 0.00 0.00 0.00 3.35
2704 2814 2.959484 TTCCCTGGAGAAGCAGCGG 61.959 63.158 0.00 0.00 0.00 5.52
2948 3059 7.639461 GCTTATTAGACGTACTGAAGTACTGAC 59.361 40.741 16.43 10.96 46.43 3.51
3104 3215 7.115663 TGTTTGTGTCTTTGTTGTTTAGAAAGC 59.884 33.333 0.00 0.00 37.12 3.51
3286 3397 5.531287 ACACTTTTGACTTATCACCCTCAAC 59.469 40.000 0.00 0.00 33.38 3.18
3522 3636 0.323957 ACTCTTTTCCGGCCACTACC 59.676 55.000 2.24 0.00 0.00 3.18
3639 3753 0.396435 CAAGTGGGTGACTGCCTGTA 59.604 55.000 0.00 0.00 34.02 2.74
3824 3938 3.071747 AGGAACAGAACCTTTGTCCTCTC 59.928 47.826 0.00 0.00 33.55 3.20
4195 4309 1.846007 ACAGCTACTCCCTCTGTCTG 58.154 55.000 0.00 0.00 36.42 3.51
4301 4417 9.528018 TGTTAAATAGAAAAAGAAAGCAACTGG 57.472 29.630 0.00 0.00 0.00 4.00
4338 4454 3.679389 ACCACAGAAAACCAGATGCTAG 58.321 45.455 0.00 0.00 0.00 3.42
4596 4729 1.892209 AAAACTGTAAGCGGGAGGTG 58.108 50.000 0.00 0.00 42.46 4.00
4655 4789 3.059597 GTGTTCAAGTCCTCACATTGTCG 60.060 47.826 0.00 0.00 0.00 4.35
4657 4791 3.884895 TGTGTTCAAGTCCTCACATTGT 58.115 40.909 0.00 0.00 36.17 2.71
4719 4853 2.624838 CTCAGTTCACAAACCAAGGCAT 59.375 45.455 0.00 0.00 35.92 4.40
4850 4985 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
4851 4986 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
4852 4987 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
4853 4988 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
4854 4989 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
4855 4990 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
4856 4991 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
4857 4992 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
4858 4993 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
4859 4994 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
4860 4995 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
4861 4996 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
4862 4997 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
4863 4998 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
4864 4999 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
4865 5000 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
4866 5001 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
4867 5002 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
4868 5003 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
4869 5004 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
4880 5015 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
4881 5016 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
4882 5017 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
4883 5018 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
4884 5019 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
4885 5020 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
4886 5021 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
4887 5022 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
4888 5023 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
4889 5024 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
4890 5025 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
4891 5026 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
4892 5027 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
4893 5028 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
4894 5029 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
4895 5030 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
4896 5031 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
4897 5032 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
4898 5033 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
4899 5034 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
4900 5035 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
4901 5036 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
4902 5037 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
4903 5038 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
4904 5039 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
4905 5040 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
4906 5041 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
4907 5042 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
4908 5043 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
4909 5044 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
4910 5045 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
4911 5046 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
4912 5047 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
4913 5048 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
4914 5049 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
4915 5050 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
4916 5051 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
4917 5052 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
4918 5053 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
4919 5054 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
4928 5063 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
4929 5064 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
4930 5065 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
4931 5066 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
4932 5067 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
4933 5068 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
4934 5069 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
4935 5070 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
4936 5071 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
4937 5072 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
4938 5073 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
4939 5074 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
4940 5075 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
4941 5076 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
4942 5077 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
4943 5078 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
4944 5079 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
4945 5080 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
4946 5081 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
4947 5082 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
4948 5083 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
4949 5084 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
4950 5085 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
4951 5086 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
4952 5087 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
4953 5088 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
4954 5089 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
4955 5090 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
4956 5091 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
4957 5092 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
4958 5093 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
4959 5094 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
4960 5095 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
4962 5097 2.593468 CTATGGACAGGGGTGCGTGG 62.593 65.000 0.00 0.00 38.35 4.94
4963 5098 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
4964 5099 3.031417 GCTATGGACAGGGGTGCGT 62.031 63.158 0.00 0.00 38.35 5.24
4965 5100 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
4966 5101 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
4967 5102 0.394565 GCTAGCTATGGACAGGGGTG 59.605 60.000 7.70 0.00 0.00 4.61
4968 5103 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95
4969 5104 0.972883 GAGCTAGCTATGGACAGGGG 59.027 60.000 19.38 0.00 0.00 4.79
4970 5105 2.008242 AGAGCTAGCTATGGACAGGG 57.992 55.000 19.38 0.00 0.00 4.45
4971 5106 3.494048 CCAAAGAGCTAGCTATGGACAGG 60.494 52.174 27.69 15.84 30.53 4.00
4972 5107 3.133721 ACCAAAGAGCTAGCTATGGACAG 59.866 47.826 33.71 17.94 32.26 3.51
4973 5108 3.107601 ACCAAAGAGCTAGCTATGGACA 58.892 45.455 33.71 0.00 32.26 4.02
4974 5109 3.133003 TCACCAAAGAGCTAGCTATGGAC 59.867 47.826 33.71 18.05 32.26 4.02
4975 5110 3.374764 TCACCAAAGAGCTAGCTATGGA 58.625 45.455 33.71 19.25 32.26 3.41
4976 5111 3.827008 TCACCAAAGAGCTAGCTATGG 57.173 47.619 28.91 28.91 33.36 2.74
4977 5112 6.095432 AGTATCACCAAAGAGCTAGCTATG 57.905 41.667 19.38 16.41 0.00 2.23
4978 5113 5.245075 GGAGTATCACCAAAGAGCTAGCTAT 59.755 44.000 19.38 12.73 36.25 2.97
4979 5114 4.585162 GGAGTATCACCAAAGAGCTAGCTA 59.415 45.833 19.38 0.00 36.25 3.32
4980 5115 3.386402 GGAGTATCACCAAAGAGCTAGCT 59.614 47.826 19.45 19.45 36.25 3.32
4981 5116 3.133003 TGGAGTATCACCAAAGAGCTAGC 59.867 47.826 6.62 6.62 36.25 3.42
4982 5117 5.344743 TTGGAGTATCACCAAAGAGCTAG 57.655 43.478 0.00 0.00 43.22 3.42
4988 5123 9.647145 ACCTGAAGGATTGGAGTATCACCAAAG 62.647 44.444 2.62 0.00 43.17 2.77
4989 5124 7.950045 ACCTGAAGGATTGGAGTATCACCAAA 61.950 42.308 2.62 0.00 43.17 3.28
4990 5125 6.527086 ACCTGAAGGATTGGAGTATCACCAA 61.527 44.000 2.62 0.00 43.61 3.67
4991 5126 3.455910 CCTGAAGGATTGGAGTATCACCA 59.544 47.826 0.00 0.00 34.60 4.17
4992 5127 3.456277 ACCTGAAGGATTGGAGTATCACC 59.544 47.826 2.62 0.00 38.94 4.02
4993 5128 4.407296 AGACCTGAAGGATTGGAGTATCAC 59.593 45.833 2.62 0.00 38.94 3.06
4994 5129 4.624913 AGACCTGAAGGATTGGAGTATCA 58.375 43.478 2.62 0.00 38.94 2.15
4995 5130 4.898861 AGAGACCTGAAGGATTGGAGTATC 59.101 45.833 2.62 0.00 38.94 2.24
4996 5131 4.889780 AGAGACCTGAAGGATTGGAGTAT 58.110 43.478 2.62 0.00 38.94 2.12
4997 5132 4.017037 AGAGAGACCTGAAGGATTGGAGTA 60.017 45.833 2.62 0.00 38.94 2.59
4998 5133 3.103742 GAGAGACCTGAAGGATTGGAGT 58.896 50.000 2.62 0.00 38.94 3.85
4999 5134 3.373830 AGAGAGACCTGAAGGATTGGAG 58.626 50.000 2.62 0.00 38.94 3.86
5000 5135 3.481559 AGAGAGACCTGAAGGATTGGA 57.518 47.619 2.62 0.00 38.94 3.53
5001 5136 5.423886 GTTAAGAGAGACCTGAAGGATTGG 58.576 45.833 2.62 0.00 38.94 3.16
5002 5137 5.105752 CGTTAAGAGAGACCTGAAGGATTG 58.894 45.833 2.62 0.00 38.94 2.67
5003 5138 4.160626 CCGTTAAGAGAGACCTGAAGGATT 59.839 45.833 2.62 0.00 38.94 3.01
5004 5139 3.702045 CCGTTAAGAGAGACCTGAAGGAT 59.298 47.826 2.62 0.00 38.94 3.24
5005 5140 3.090037 CCGTTAAGAGAGACCTGAAGGA 58.910 50.000 2.62 0.00 38.94 3.36
5006 5141 3.090037 TCCGTTAAGAGAGACCTGAAGG 58.910 50.000 0.00 0.00 42.17 3.46
5007 5142 3.759618 AGTCCGTTAAGAGAGACCTGAAG 59.240 47.826 0.00 0.00 0.00 3.02
5008 5143 3.757493 GAGTCCGTTAAGAGAGACCTGAA 59.243 47.826 0.00 0.00 0.00 3.02
5009 5144 3.345414 GAGTCCGTTAAGAGAGACCTGA 58.655 50.000 0.00 0.00 0.00 3.86
5010 5145 2.424246 GGAGTCCGTTAAGAGAGACCTG 59.576 54.545 0.00 0.00 0.00 4.00
5011 5146 2.309458 AGGAGTCCGTTAAGAGAGACCT 59.691 50.000 2.76 0.00 0.00 3.85
5012 5147 2.684374 GAGGAGTCCGTTAAGAGAGACC 59.316 54.545 2.76 0.00 0.00 3.85
5013 5148 2.684374 GGAGGAGTCCGTTAAGAGAGAC 59.316 54.545 2.76 0.00 31.37 3.36
5014 5149 2.356947 GGGAGGAGTCCGTTAAGAGAGA 60.357 54.545 2.76 0.00 45.05 3.10
5015 5150 2.025898 GGGAGGAGTCCGTTAAGAGAG 58.974 57.143 2.76 0.00 45.05 3.20
5016 5151 1.356738 TGGGAGGAGTCCGTTAAGAGA 59.643 52.381 2.76 0.00 45.05 3.10
5017 5152 1.848652 TGGGAGGAGTCCGTTAAGAG 58.151 55.000 2.76 0.00 45.05 2.85
5018 5153 2.108168 CATGGGAGGAGTCCGTTAAGA 58.892 52.381 2.76 0.00 45.05 2.10
5019 5154 1.831736 ACATGGGAGGAGTCCGTTAAG 59.168 52.381 2.76 0.00 45.05 1.85
5020 5155 1.829222 GACATGGGAGGAGTCCGTTAA 59.171 52.381 2.76 0.00 45.05 2.01
5021 5156 1.272816 TGACATGGGAGGAGTCCGTTA 60.273 52.381 2.76 0.00 45.05 3.18
5022 5157 0.544357 TGACATGGGAGGAGTCCGTT 60.544 55.000 2.76 0.00 45.05 4.44
5023 5158 0.544357 TTGACATGGGAGGAGTCCGT 60.544 55.000 2.76 0.00 45.05 4.69
5024 5159 0.613260 TTTGACATGGGAGGAGTCCG 59.387 55.000 2.76 0.00 45.05 4.79
5025 5160 3.282885 GAATTTGACATGGGAGGAGTCC 58.717 50.000 0.00 0.00 43.05 3.85
5026 5161 2.939103 CGAATTTGACATGGGAGGAGTC 59.061 50.000 0.00 0.00 0.00 3.36
5027 5162 2.356125 CCGAATTTGACATGGGAGGAGT 60.356 50.000 0.00 0.00 0.00 3.85
5028 5163 2.292267 CCGAATTTGACATGGGAGGAG 58.708 52.381 0.00 0.00 0.00 3.69
5029 5164 1.633432 ACCGAATTTGACATGGGAGGA 59.367 47.619 0.00 0.00 0.00 3.71
5030 5165 2.017049 GACCGAATTTGACATGGGAGG 58.983 52.381 0.00 0.00 0.00 4.30
5031 5166 2.991250 AGACCGAATTTGACATGGGAG 58.009 47.619 0.00 0.00 0.00 4.30
5032 5167 3.262151 TGTAGACCGAATTTGACATGGGA 59.738 43.478 0.00 0.00 0.00 4.37
5033 5168 3.605634 TGTAGACCGAATTTGACATGGG 58.394 45.455 0.00 0.00 0.00 4.00
5034 5169 3.063997 GCTGTAGACCGAATTTGACATGG 59.936 47.826 0.00 0.00 0.00 3.66
5035 5170 3.684305 TGCTGTAGACCGAATTTGACATG 59.316 43.478 0.00 0.00 0.00 3.21
5036 5171 3.684788 GTGCTGTAGACCGAATTTGACAT 59.315 43.478 0.00 0.00 0.00 3.06
5037 5172 3.064207 GTGCTGTAGACCGAATTTGACA 58.936 45.455 0.00 0.00 0.00 3.58
5038 5173 2.415512 GGTGCTGTAGACCGAATTTGAC 59.584 50.000 0.00 0.00 0.00 3.18
5039 5174 2.614481 GGGTGCTGTAGACCGAATTTGA 60.614 50.000 0.00 0.00 33.89 2.69
5040 5175 1.737793 GGGTGCTGTAGACCGAATTTG 59.262 52.381 0.00 0.00 33.89 2.32
5041 5176 1.628846 AGGGTGCTGTAGACCGAATTT 59.371 47.619 0.00 0.00 33.89 1.82
5042 5177 1.207329 GAGGGTGCTGTAGACCGAATT 59.793 52.381 0.00 0.00 33.89 2.17
5043 5178 0.824759 GAGGGTGCTGTAGACCGAAT 59.175 55.000 0.00 0.00 33.89 3.34
5044 5179 0.251653 AGAGGGTGCTGTAGACCGAA 60.252 55.000 0.00 0.00 33.89 4.30
5045 5180 0.680280 GAGAGGGTGCTGTAGACCGA 60.680 60.000 0.00 0.00 33.89 4.69
5046 5181 0.681564 AGAGAGGGTGCTGTAGACCG 60.682 60.000 0.00 0.00 33.89 4.79
5047 5182 1.205893 CAAGAGAGGGTGCTGTAGACC 59.794 57.143 0.00 0.00 0.00 3.85
5048 5183 2.094442 GTCAAGAGAGGGTGCTGTAGAC 60.094 54.545 0.00 0.00 0.00 2.59
5049 5184 2.171840 GTCAAGAGAGGGTGCTGTAGA 58.828 52.381 0.00 0.00 0.00 2.59
5050 5185 1.895798 TGTCAAGAGAGGGTGCTGTAG 59.104 52.381 0.00 0.00 0.00 2.74
5051 5186 2.009681 TGTCAAGAGAGGGTGCTGTA 57.990 50.000 0.00 0.00 0.00 2.74
5052 5187 1.356124 ATGTCAAGAGAGGGTGCTGT 58.644 50.000 0.00 0.00 0.00 4.40
5053 5188 2.027377 AGAATGTCAAGAGAGGGTGCTG 60.027 50.000 0.00 0.00 0.00 4.41
5054 5189 2.235898 GAGAATGTCAAGAGAGGGTGCT 59.764 50.000 0.00 0.00 0.00 4.40
5055 5190 2.626840 GAGAATGTCAAGAGAGGGTGC 58.373 52.381 0.00 0.00 0.00 5.01
5056 5191 2.417924 CGGAGAATGTCAAGAGAGGGTG 60.418 54.545 0.00 0.00 0.00 4.61
5057 5192 1.827969 CGGAGAATGTCAAGAGAGGGT 59.172 52.381 0.00 0.00 0.00 4.34
5058 5193 1.472376 GCGGAGAATGTCAAGAGAGGG 60.472 57.143 0.00 0.00 0.00 4.30
5059 5194 1.205655 TGCGGAGAATGTCAAGAGAGG 59.794 52.381 0.00 0.00 0.00 3.69
5060 5195 2.266554 GTGCGGAGAATGTCAAGAGAG 58.733 52.381 0.00 0.00 0.00 3.20
5061 5196 1.402852 CGTGCGGAGAATGTCAAGAGA 60.403 52.381 0.00 0.00 0.00 3.10
5062 5197 0.994995 CGTGCGGAGAATGTCAAGAG 59.005 55.000 0.00 0.00 0.00 2.85
5063 5198 1.014044 GCGTGCGGAGAATGTCAAGA 61.014 55.000 0.00 0.00 0.00 3.02
5064 5199 1.016130 AGCGTGCGGAGAATGTCAAG 61.016 55.000 0.00 0.00 0.00 3.02
5065 5200 0.602638 AAGCGTGCGGAGAATGTCAA 60.603 50.000 0.00 0.00 0.00 3.18
5066 5201 0.602638 AAAGCGTGCGGAGAATGTCA 60.603 50.000 0.00 0.00 0.00 3.58
5067 5202 1.324736 CTAAAGCGTGCGGAGAATGTC 59.675 52.381 0.00 0.00 0.00 3.06
5068 5203 1.359848 CTAAAGCGTGCGGAGAATGT 58.640 50.000 0.00 0.00 0.00 2.71
5069 5204 0.026803 GCTAAAGCGTGCGGAGAATG 59.973 55.000 0.00 0.00 0.00 2.67
5070 5205 1.090052 GGCTAAAGCGTGCGGAGAAT 61.090 55.000 0.00 0.00 43.26 2.40
5071 5206 1.740296 GGCTAAAGCGTGCGGAGAA 60.740 57.895 0.00 0.00 43.26 2.87
5072 5207 2.125673 GGCTAAAGCGTGCGGAGA 60.126 61.111 0.00 0.00 43.26 3.71
5073 5208 3.554692 CGGCTAAAGCGTGCGGAG 61.555 66.667 0.00 0.00 43.26 4.63
5074 5209 4.367023 ACGGCTAAAGCGTGCGGA 62.367 61.111 0.00 0.00 43.26 5.54
5075 5210 3.849953 GACGGCTAAAGCGTGCGG 61.850 66.667 0.00 0.00 43.26 5.69
5076 5211 3.849953 GGACGGCTAAAGCGTGCG 61.850 66.667 0.00 1.74 43.26 5.34
5077 5212 3.497031 GGGACGGCTAAAGCGTGC 61.497 66.667 8.93 8.93 43.26 5.34
5078 5213 1.952102 TAGGGGACGGCTAAAGCGTG 61.952 60.000 0.00 0.00 43.26 5.34
5079 5214 1.047034 ATAGGGGACGGCTAAAGCGT 61.047 55.000 0.00 0.00 43.26 5.07
5080 5215 0.600255 CATAGGGGACGGCTAAAGCG 60.600 60.000 0.00 0.00 43.26 4.68
5081 5216 0.885150 GCATAGGGGACGGCTAAAGC 60.885 60.000 0.00 0.00 41.14 3.51
5082 5217 0.468226 TGCATAGGGGACGGCTAAAG 59.532 55.000 0.00 0.00 0.00 1.85
5083 5218 0.179468 GTGCATAGGGGACGGCTAAA 59.821 55.000 0.00 0.00 0.00 1.85
5084 5219 0.689745 AGTGCATAGGGGACGGCTAA 60.690 55.000 0.00 0.00 43.57 3.09
5085 5220 1.075525 AGTGCATAGGGGACGGCTA 60.076 57.895 0.00 0.00 43.57 3.93
5086 5221 2.365635 AGTGCATAGGGGACGGCT 60.366 61.111 0.00 0.00 43.57 5.52
5087 5222 2.203070 CAGTGCATAGGGGACGGC 60.203 66.667 0.00 0.00 43.57 5.68
5088 5223 2.032860 CTCCAGTGCATAGGGGACGG 62.033 65.000 1.14 0.00 43.57 4.79
5089 5224 1.043116 TCTCCAGTGCATAGGGGACG 61.043 60.000 5.90 0.00 43.57 4.79
5090 5225 1.071385 CATCTCCAGTGCATAGGGGAC 59.929 57.143 11.69 0.00 37.19 4.46
5091 5226 1.062198 TCATCTCCAGTGCATAGGGGA 60.062 52.381 11.82 11.82 39.11 4.81
5092 5227 1.427809 TCATCTCCAGTGCATAGGGG 58.572 55.000 7.45 4.38 0.00 4.79
5093 5228 3.209410 GTTTCATCTCCAGTGCATAGGG 58.791 50.000 7.45 1.61 0.00 3.53
5094 5229 3.209410 GGTTTCATCTCCAGTGCATAGG 58.791 50.000 0.00 0.00 0.00 2.57
5095 5230 3.209410 GGGTTTCATCTCCAGTGCATAG 58.791 50.000 0.00 0.00 0.00 2.23
5096 5231 2.575735 TGGGTTTCATCTCCAGTGCATA 59.424 45.455 0.00 0.00 0.00 3.14
5097 5232 1.355381 TGGGTTTCATCTCCAGTGCAT 59.645 47.619 0.00 0.00 0.00 3.96
5098 5233 0.770499 TGGGTTTCATCTCCAGTGCA 59.230 50.000 0.00 0.00 0.00 4.57
5099 5234 1.909700 TTGGGTTTCATCTCCAGTGC 58.090 50.000 0.00 0.00 31.59 4.40
5100 5235 3.256631 CCTTTTGGGTTTCATCTCCAGTG 59.743 47.826 0.00 0.00 35.46 3.66
5101 5236 3.500343 CCTTTTGGGTTTCATCTCCAGT 58.500 45.455 0.00 0.00 35.46 4.00
5114 5249 1.133482 AGGTTCTGGTGACCTTTTGGG 60.133 52.381 2.11 0.00 46.08 4.12
5115 5250 2.362077 CAAGGTTCTGGTGACCTTTTGG 59.638 50.000 2.11 0.00 41.48 3.28
5116 5251 2.362077 CCAAGGTTCTGGTGACCTTTTG 59.638 50.000 2.11 0.00 41.48 2.44
5117 5252 2.243736 TCCAAGGTTCTGGTGACCTTTT 59.756 45.455 2.11 0.00 41.48 2.27
5118 5253 1.850345 TCCAAGGTTCTGGTGACCTTT 59.150 47.619 2.11 0.00 41.48 3.11
5119 5254 1.518367 TCCAAGGTTCTGGTGACCTT 58.482 50.000 2.11 2.81 43.95 3.50
5120 5255 1.518367 TTCCAAGGTTCTGGTGACCT 58.482 50.000 2.11 0.00 37.74 3.85
5121 5256 2.162681 CATTCCAAGGTTCTGGTGACC 58.837 52.381 0.00 0.00 37.74 4.02
5122 5257 3.140325 TCATTCCAAGGTTCTGGTGAC 57.860 47.619 0.00 0.00 37.74 3.67
5123 5258 3.117701 TGTTCATTCCAAGGTTCTGGTGA 60.118 43.478 0.00 0.00 37.74 4.02
5124 5259 3.004734 GTGTTCATTCCAAGGTTCTGGTG 59.995 47.826 0.00 0.00 37.74 4.17
5125 5260 3.222603 GTGTTCATTCCAAGGTTCTGGT 58.777 45.455 0.00 0.00 37.74 4.00
5126 5261 3.221771 TGTGTTCATTCCAAGGTTCTGG 58.778 45.455 0.00 0.00 37.87 3.86
5127 5262 6.764308 ATATGTGTTCATTCCAAGGTTCTG 57.236 37.500 0.00 0.00 35.70 3.02
5128 5263 7.402054 TGTATATGTGTTCATTCCAAGGTTCT 58.598 34.615 0.00 0.00 35.70 3.01
5129 5264 7.624360 TGTATATGTGTTCATTCCAAGGTTC 57.376 36.000 0.00 0.00 35.70 3.62
5130 5265 6.095440 GCTGTATATGTGTTCATTCCAAGGTT 59.905 38.462 0.00 0.00 35.70 3.50
5131 5266 5.590259 GCTGTATATGTGTTCATTCCAAGGT 59.410 40.000 0.00 0.00 35.70 3.50
5132 5267 5.824624 AGCTGTATATGTGTTCATTCCAAGG 59.175 40.000 0.00 0.00 35.70 3.61
5133 5268 6.539826 TGAGCTGTATATGTGTTCATTCCAAG 59.460 38.462 0.00 0.00 35.70 3.61
5134 5269 6.316140 GTGAGCTGTATATGTGTTCATTCCAA 59.684 38.462 0.00 0.00 35.70 3.53
5135 5270 5.817296 GTGAGCTGTATATGTGTTCATTCCA 59.183 40.000 0.00 0.00 35.70 3.53
5136 5271 6.018425 CAGTGAGCTGTATATGTGTTCATTCC 60.018 42.308 0.00 0.00 37.92 3.01
5137 5272 6.941802 CAGTGAGCTGTATATGTGTTCATTC 58.058 40.000 0.00 0.00 37.92 2.67
5259 5394 9.824216 ATAGCTAGACAATAACAGGAAGGTATA 57.176 33.333 0.00 0.00 27.46 1.47
5260 5395 8.728596 ATAGCTAGACAATAACAGGAAGGTAT 57.271 34.615 0.00 0.00 0.00 2.73
5267 5402 9.764363 TCACATAAATAGCTAGACAATAACAGG 57.236 33.333 0.00 0.00 0.00 4.00
5500 5635 9.347240 AGTTGAAAGTCAGCAGCATATATTATT 57.653 29.630 0.00 0.00 29.40 1.40
6188 6326 4.537135 ATCTGTCAAGTGTGAATACGGT 57.463 40.909 0.00 0.00 34.87 4.83
6275 6413 5.575157 TCAGAGAGACTATGTGAACTTCCT 58.425 41.667 0.00 0.00 0.00 3.36
6379 6517 9.791820 CATTGTGCTTAATATCACTTGAAATGA 57.208 29.630 0.00 0.00 30.75 2.57
6575 6713 8.648557 AAATGGAAAAGCTTTTAGAACAGAAC 57.351 30.769 23.90 8.46 0.00 3.01
6743 6881 5.335191 GCAGGCAAATTATATAGAGGCACAC 60.335 44.000 0.00 0.00 0.00 3.82
6744 6882 4.761739 GCAGGCAAATTATATAGAGGCACA 59.238 41.667 0.00 0.00 0.00 4.57
6780 6918 5.046304 ACTTCACTCATGGCTACATAACAGT 60.046 40.000 0.00 0.00 34.99 3.55
6781 6919 5.423015 ACTTCACTCATGGCTACATAACAG 58.577 41.667 0.00 0.00 34.99 3.16
6981 7119 5.393962 ACTTGCGCAGAAATATCAAAGAAC 58.606 37.500 11.31 0.00 0.00 3.01
6984 7122 4.973396 TGACTTGCGCAGAAATATCAAAG 58.027 39.130 11.31 3.19 0.00 2.77
7516 7657 0.687757 TATCGCTGGCTGGGTCTCTT 60.688 55.000 8.24 0.00 0.00 2.85
7740 8005 7.996098 TTTATATTGGACCCTAGCAATTAGC 57.004 36.000 0.00 0.00 46.19 3.09
7742 8007 9.875708 ACATTTTATATTGGACCCTAGCAATTA 57.124 29.630 0.00 0.00 0.00 1.40
7743 8008 8.782137 ACATTTTATATTGGACCCTAGCAATT 57.218 30.769 0.00 0.00 0.00 2.32
7744 8009 8.782137 AACATTTTATATTGGACCCTAGCAAT 57.218 30.769 0.00 0.00 0.00 3.56
7745 8010 9.127277 GTAACATTTTATATTGGACCCTAGCAA 57.873 33.333 0.00 0.00 0.00 3.91
7924 8189 3.486383 TCCATCCAACTTGGTGAAGAAC 58.514 45.455 7.72 0.00 39.03 3.01
8212 8477 5.296813 ACTGACCAGAATTTTGCGTATTC 57.703 39.130 3.76 0.00 33.23 1.75
8498 8763 3.297134 TGAAGCTCAGGGAAAAGTGTT 57.703 42.857 0.00 0.00 0.00 3.32
8616 8881 4.786575 CGACGCAGGCTTAGAATTTAAAAC 59.213 41.667 0.00 0.00 0.00 2.43
8712 8980 1.066752 GGGCGAAACACCAACCAAC 59.933 57.895 0.00 0.00 0.00 3.77
8729 8997 4.821805 CAGCTGTACATATTTAAGTGGGGG 59.178 45.833 5.25 0.00 0.00 5.40
8730 8998 5.437060 ACAGCTGTACATATTTAAGTGGGG 58.563 41.667 20.16 0.00 0.00 4.96
8731 8999 9.944376 ATATACAGCTGTACATATTTAAGTGGG 57.056 33.333 28.28 0.00 32.72 4.61
8912 9374 1.003839 TGCCGAAGAAGACGCCATT 60.004 52.632 0.00 0.00 0.00 3.16
9584 10060 0.528901 GTTCCAAACGGGCCAAACAC 60.529 55.000 4.39 0.00 36.21 3.32
9589 10065 1.152652 ATGTGTTCCAAACGGGCCA 60.153 52.632 4.39 0.00 36.21 5.36
9604 10080 6.003950 AGCTACACACCAGTAAAATTCATGT 58.996 36.000 0.00 0.00 0.00 3.21
9643 10119 2.027745 GCAACAGACCTTCTCCATCTCA 60.028 50.000 0.00 0.00 0.00 3.27
9646 10122 2.289945 ACAGCAACAGACCTTCTCCATC 60.290 50.000 0.00 0.00 0.00 3.51
9654 10130 0.532862 CGGAACACAGCAACAGACCT 60.533 55.000 0.00 0.00 0.00 3.85
9655 10131 1.507141 CCGGAACACAGCAACAGACC 61.507 60.000 0.00 0.00 0.00 3.85
9656 10132 0.531974 TCCGGAACACAGCAACAGAC 60.532 55.000 0.00 0.00 0.00 3.51
9657 10133 0.531974 GTCCGGAACACAGCAACAGA 60.532 55.000 5.23 0.00 0.00 3.41
9658 10134 1.831389 CGTCCGGAACACAGCAACAG 61.831 60.000 5.23 0.00 0.00 3.16
9661 10137 2.280524 CCGTCCGGAACACAGCAA 60.281 61.111 5.23 0.00 37.50 3.91
9662 10138 4.308458 CCCGTCCGGAACACAGCA 62.308 66.667 5.23 0.00 37.50 4.41
9663 10139 4.309950 ACCCGTCCGGAACACAGC 62.310 66.667 5.23 0.00 37.50 4.40
9678 10154 3.543680 ACTGCACATACATACCAGACC 57.456 47.619 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.