Multiple sequence alignment - TraesCS4B01G112700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G112700 chr4B 100.000 3299 0 0 1 3299 126731205 126727907 0.000000e+00 6093.0
1 TraesCS4B01G112700 chr4A 92.272 3235 136 40 1 3174 502358935 502355754 0.000000e+00 4484.0
2 TraesCS4B01G112700 chr4A 94.898 98 2 2 3176 3272 502355706 502355611 2.050000e-32 150.0
3 TraesCS4B01G112700 chr4D 93.396 2877 109 33 344 3179 89931627 89928791 0.000000e+00 4185.0
4 TraesCS4B01G112700 chr4D 90.698 215 17 2 1 212 89932130 89931916 1.940000e-72 283.0
5 TraesCS4B01G112700 chr4D 95.050 101 1 3 3176 3272 89928758 89928658 4.410000e-34 156.0
6 TraesCS4B01G112700 chr4D 93.103 58 4 0 265 322 89931893 89931836 5.870000e-13 86.1
7 TraesCS4B01G112700 chr1A 85.167 1591 186 18 829 2376 586954264 586952681 0.000000e+00 1585.0
8 TraesCS4B01G112700 chr1B 84.601 1604 197 23 817 2376 679749453 679747856 0.000000e+00 1548.0
9 TraesCS4B01G112700 chr1D 86.557 1153 135 6 1241 2376 487953006 487951857 0.000000e+00 1253.0
10 TraesCS4B01G112700 chr5A 76.279 215 39 5 265 473 556238479 556238271 1.620000e-18 104.0
11 TraesCS4B01G112700 chr5A 76.279 215 39 5 265 473 556386845 556386637 1.620000e-18 104.0
12 TraesCS4B01G112700 chr3D 83.077 65 8 1 3 64 47709340 47709404 4.600000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G112700 chr4B 126727907 126731205 3298 True 6093.000 6093 100.00000 1 3299 1 chr4B.!!$R1 3298
1 TraesCS4B01G112700 chr4A 502355611 502358935 3324 True 2317.000 4484 93.58500 1 3272 2 chr4A.!!$R1 3271
2 TraesCS4B01G112700 chr4D 89928658 89932130 3472 True 1177.525 4185 93.06175 1 3272 4 chr4D.!!$R1 3271
3 TraesCS4B01G112700 chr1A 586952681 586954264 1583 True 1585.000 1585 85.16700 829 2376 1 chr1A.!!$R1 1547
4 TraesCS4B01G112700 chr1B 679747856 679749453 1597 True 1548.000 1548 84.60100 817 2376 1 chr1B.!!$R1 1559
5 TraesCS4B01G112700 chr1D 487951857 487953006 1149 True 1253.000 1253 86.55700 1241 2376 1 chr1D.!!$R1 1135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.397564 TGAGCATCACCAGCAGTTCA 59.602 50.000 0.00 0.00 42.56 3.18 F
690 921 0.668535 GATTATTGCCGTTCCAGCCC 59.331 55.000 0.00 0.00 0.00 5.19 F
761 992 1.299850 TGCCAGTCGAGTGTGTTCG 60.300 57.895 18.64 4.44 41.79 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 2197 0.464373 ATCACCATGATCCACCGCAC 60.464 55.000 0.00 0.0 29.59 5.34 R
2054 2326 0.319555 TGAAGTCAAGTCCTTCCGCG 60.320 55.000 0.00 0.0 38.00 6.46 R
2700 2984 1.078214 TCTTTGATGCCGAGGCCAG 60.078 57.895 12.05 0.0 41.09 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.397564 TGAGCATCACCAGCAGTTCA 59.602 50.000 0.00 0.00 42.56 3.18
71 75 4.695606 GGGGTGTCCATATAATCTAGGGA 58.304 47.826 0.00 0.00 35.00 4.20
78 82 7.016268 GTGTCCATATAATCTAGGGAAGGTTGA 59.984 40.741 0.00 0.00 29.02 3.18
144 148 3.436055 GTATTTGGCGGTGGCGCA 61.436 61.111 10.83 0.00 41.24 6.09
325 337 1.318934 ATGTTTAGGGGAAGGGCCAT 58.681 50.000 6.18 0.00 38.95 4.40
473 673 1.545428 GGGAACTGTTGGTGATGCTCA 60.545 52.381 0.00 0.00 0.00 4.26
474 674 1.808945 GGAACTGTTGGTGATGCTCAG 59.191 52.381 0.00 0.00 0.00 3.35
521 721 4.808558 TCCAATTTGCTGTCAATAAGTGC 58.191 39.130 0.00 0.00 31.33 4.40
522 722 4.280425 TCCAATTTGCTGTCAATAAGTGCA 59.720 37.500 0.00 0.00 31.33 4.57
607 816 3.581755 CAGTGACAAATCCCTGCAAATG 58.418 45.455 0.00 0.00 0.00 2.32
616 825 6.650390 ACAAATCCCTGCAAATGTTATTGTTC 59.350 34.615 0.00 0.00 32.80 3.18
619 828 4.279671 TCCCTGCAAATGTTATTGTTCGTT 59.720 37.500 0.00 0.00 32.80 3.85
623 832 5.218885 TGCAAATGTTATTGTTCGTTCTGG 58.781 37.500 0.00 0.00 32.80 3.86
651 882 6.803154 ACTGTATTTTAAGTGTTCCAGAGC 57.197 37.500 0.00 0.00 0.00 4.09
654 885 6.530120 TGTATTTTAAGTGTTCCAGAGCTCA 58.470 36.000 17.77 0.00 0.00 4.26
661 892 5.948992 AGTGTTCCAGAGCTCATTTTAAC 57.051 39.130 17.77 12.47 0.00 2.01
690 921 0.668535 GATTATTGCCGTTCCAGCCC 59.331 55.000 0.00 0.00 0.00 5.19
761 992 1.299850 TGCCAGTCGAGTGTGTTCG 60.300 57.895 18.64 4.44 41.79 3.95
775 1006 4.094590 AGTGTGTTCGAGAGTACCTTATCG 59.905 45.833 0.00 0.00 36.54 2.92
776 1007 4.005650 TGTGTTCGAGAGTACCTTATCGT 58.994 43.478 0.00 0.00 36.58 3.73
807 1038 9.527157 TTATTTAGGTGTTCCTGATGAAATTCA 57.473 29.630 0.00 0.00 44.81 2.57
808 1039 7.831691 TTTAGGTGTTCCTGATGAAATTCAA 57.168 32.000 0.00 0.00 44.81 2.69
809 1040 5.712152 AGGTGTTCCTGATGAAATTCAAC 57.288 39.130 0.00 0.00 43.33 3.18
810 1041 4.524328 AGGTGTTCCTGATGAAATTCAACC 59.476 41.667 0.00 0.33 43.33 3.77
811 1042 4.524328 GGTGTTCCTGATGAAATTCAACCT 59.476 41.667 0.00 0.00 33.94 3.50
812 1043 5.335976 GGTGTTCCTGATGAAATTCAACCTC 60.336 44.000 0.00 0.00 33.94 3.85
813 1044 5.474876 GTGTTCCTGATGAAATTCAACCTCT 59.525 40.000 0.00 0.00 33.94 3.69
814 1045 6.655003 GTGTTCCTGATGAAATTCAACCTCTA 59.345 38.462 0.00 0.00 33.94 2.43
815 1046 7.337942 GTGTTCCTGATGAAATTCAACCTCTAT 59.662 37.037 0.00 0.00 33.94 1.98
816 1047 7.554118 TGTTCCTGATGAAATTCAACCTCTATC 59.446 37.037 0.00 0.00 33.94 2.08
817 1048 7.443302 TCCTGATGAAATTCAACCTCTATCT 57.557 36.000 0.00 0.00 0.00 1.98
818 1049 8.553085 TCCTGATGAAATTCAACCTCTATCTA 57.447 34.615 0.00 0.00 0.00 1.98
819 1050 9.163894 TCCTGATGAAATTCAACCTCTATCTAT 57.836 33.333 0.00 0.00 0.00 1.98
820 1051 9.790344 CCTGATGAAATTCAACCTCTATCTATT 57.210 33.333 0.00 0.00 0.00 1.73
838 1069 9.844790 CTATCTATTTTGTTCAGCAACATTGAA 57.155 29.630 0.00 0.00 42.28 2.69
872 1103 3.951037 TGTGCAAATATACATTTCCGGCT 59.049 39.130 0.00 0.00 31.82 5.52
876 1107 4.141287 CAAATATACATTTCCGGCTGGGA 58.859 43.478 12.87 0.00 45.40 4.37
896 1127 7.759886 GCTGGGACTTTAATAATTTCTCCAAAC 59.240 37.037 0.00 0.00 0.00 2.93
930 1169 7.275183 CAGGGTGATATTGAAGTGAAGACATA 58.725 38.462 0.00 0.00 0.00 2.29
1143 1382 5.435291 CAATCTCAGATGCTAGGGAGTTTT 58.565 41.667 0.00 0.00 0.00 2.43
1243 1509 4.081420 ACCAGCACAGTCATTACTCTAAGG 60.081 45.833 0.00 0.00 31.97 2.69
1701 1973 7.493645 CACTTATTCTATGAGCAGATGTGTTCA 59.506 37.037 11.75 11.75 46.59 3.18
1904 2176 6.884472 TCATACCAACTTGAGGGATTCTTA 57.116 37.500 0.00 0.00 0.00 2.10
1995 2267 3.009143 GTGTTAGTGGGAGGTTCAATCCT 59.991 47.826 0.00 0.00 40.97 3.24
2012 2284 3.286329 TCCTCATGACATCACATTGGG 57.714 47.619 0.00 0.00 0.00 4.12
2054 2326 1.408702 TGGAGCCAACTTGTCTTTTGC 59.591 47.619 0.00 0.00 0.00 3.68
2086 2358 6.483640 GGACTTGACTTCACAACAAATAGAGT 59.516 38.462 0.00 0.00 0.00 3.24
2106 2378 2.686558 TTCAGAAACATCGCTTGCAC 57.313 45.000 0.00 0.00 0.00 4.57
2254 2526 3.402628 TGGAACTTCAGCTAAGACACC 57.597 47.619 9.14 8.94 38.67 4.16
2525 2808 2.665649 TATTCGTGATGCGTGAGGTT 57.334 45.000 0.00 0.00 42.13 3.50
2549 2832 5.509498 TCTTTGAGGATGTTCATTAAGGGG 58.491 41.667 0.00 0.00 0.00 4.79
2666 2950 3.454447 CCTGGGTGATACATAGTTGGTGA 59.546 47.826 0.00 0.00 0.00 4.02
2700 2984 6.129874 AGAAAATAGAAGCTTCCATTACCCC 58.870 40.000 22.81 10.49 0.00 4.95
2739 3023 1.400494 CGCATGTAGCCCAAACCTTAC 59.600 52.381 0.00 0.00 41.38 2.34
2750 3034 5.010617 AGCCCAAACCTTACTACAACATTTG 59.989 40.000 0.00 0.00 0.00 2.32
2786 3070 5.948162 AGCCAAATCAATGAAGTGTACTGAT 59.052 36.000 0.00 0.00 0.00 2.90
2956 3240 6.018098 CAGCTTCTGTATGAAATGGATGACTC 60.018 42.308 0.00 0.00 33.79 3.36
3018 3302 3.821421 AAGCGTATAAACTCTCTGGGG 57.179 47.619 0.00 0.00 0.00 4.96
3034 3318 1.047801 GGGGTGCCATTGTTTGTTCT 58.952 50.000 0.00 0.00 0.00 3.01
3042 3326 5.236047 GTGCCATTGTTTGTTCTATTGCAAA 59.764 36.000 1.71 0.00 32.89 3.68
3109 3394 8.922058 TTACATAGAGCTTACTTAAGTTTCGG 57.078 34.615 14.49 3.28 35.75 4.30
3139 3424 1.603739 GGCACTCCCAAGTCCCAAC 60.604 63.158 0.00 0.00 33.04 3.77
3140 3425 1.603739 GCACTCCCAAGTCCCAACC 60.604 63.158 0.00 0.00 31.71 3.77
3141 3426 1.843421 CACTCCCAAGTCCCAACCA 59.157 57.895 0.00 0.00 31.71 3.67
3142 3427 0.405585 CACTCCCAAGTCCCAACCAT 59.594 55.000 0.00 0.00 31.71 3.55
3143 3428 1.633432 CACTCCCAAGTCCCAACCATA 59.367 52.381 0.00 0.00 31.71 2.74
3144 3429 2.041081 CACTCCCAAGTCCCAACCATAA 59.959 50.000 0.00 0.00 31.71 1.90
3147 3432 4.166144 ACTCCCAAGTCCCAACCATAATAG 59.834 45.833 0.00 0.00 0.00 1.73
3174 3459 7.538678 GTGAATTGGTCTGTTACTTATTGCTTG 59.461 37.037 0.00 0.00 0.00 4.01
3203 3536 5.955488 TGAAGAGATGCTACAGAACTACAC 58.045 41.667 0.00 0.00 0.00 2.90
3204 3537 5.476945 TGAAGAGATGCTACAGAACTACACA 59.523 40.000 0.00 0.00 0.00 3.72
3205 3538 5.574891 AGAGATGCTACAGAACTACACAG 57.425 43.478 0.00 0.00 0.00 3.66
3206 3539 5.257262 AGAGATGCTACAGAACTACACAGA 58.743 41.667 0.00 0.00 0.00 3.41
3286 3619 5.437191 TTTTTCTTCCAGGGGAGATAGAC 57.563 43.478 0.00 0.00 31.21 2.59
3287 3620 2.777459 TCTTCCAGGGGAGATAGACC 57.223 55.000 0.00 0.00 31.21 3.85
3288 3621 1.937350 TCTTCCAGGGGAGATAGACCA 59.063 52.381 0.00 0.00 31.21 4.02
3289 3622 2.091055 TCTTCCAGGGGAGATAGACCAG 60.091 54.545 0.00 0.00 31.21 4.00
3290 3623 0.105453 TCCAGGGGAGATAGACCAGC 60.105 60.000 0.00 0.00 0.00 4.85
3291 3624 0.105246 CCAGGGGAGATAGACCAGCT 60.105 60.000 0.00 0.00 0.00 4.24
3292 3625 1.047002 CAGGGGAGATAGACCAGCTG 58.953 60.000 6.78 6.78 0.00 4.24
3293 3626 0.639392 AGGGGAGATAGACCAGCTGT 59.361 55.000 13.81 0.11 0.00 4.40
3294 3627 1.044611 GGGGAGATAGACCAGCTGTC 58.955 60.000 13.81 10.34 44.82 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.227982 ACACCCCGTAAAACCATATTAGGT 59.772 41.667 0.00 0.00 45.91 3.08
35 36 4.226846 TGGACACCCCGTAAAACCATATTA 59.773 41.667 0.00 0.00 37.93 0.98
49 53 4.695606 TCCCTAGATTATATGGACACCCC 58.304 47.826 0.00 0.00 0.00 4.95
71 75 0.536006 GCAGCTCACCTGTCAACCTT 60.536 55.000 0.00 0.00 43.71 3.50
78 82 0.752743 TGCAAAAGCAGCTCACCTGT 60.753 50.000 0.00 0.00 43.71 4.00
103 107 7.913789 ACCATTTTTAGGGGAAGATTTTTACC 58.086 34.615 0.00 0.00 0.00 2.85
171 178 3.770040 CACCCGATCCGCTGTCCA 61.770 66.667 0.00 0.00 0.00 4.02
197 204 4.054455 CAAACCGTCGCCGTCACG 62.054 66.667 0.00 0.00 36.99 4.35
229 236 4.016629 CGACGACGACACCGACCA 62.017 66.667 0.00 0.00 42.66 4.02
282 294 1.535028 CATAAAACTGCCACGTCAGCA 59.465 47.619 9.30 9.30 37.59 4.41
389 588 2.736670 AAAGTGCTCCAACAGTTCCT 57.263 45.000 0.00 0.00 31.99 3.36
415 614 2.583441 GCTTTTGGGGGAGTTGGGC 61.583 63.158 0.00 0.00 0.00 5.36
521 721 5.209818 TGGTATTTCGTAAGGGAGCTATG 57.790 43.478 0.00 0.00 38.47 2.23
522 722 5.542635 TCATGGTATTTCGTAAGGGAGCTAT 59.457 40.000 0.00 0.00 38.47 2.97
607 816 6.018507 ACAGTACAACCAGAACGAACAATAAC 60.019 38.462 0.00 0.00 0.00 1.89
616 825 8.007716 CACTTAAAATACAGTACAACCAGAACG 58.992 37.037 0.00 0.00 0.00 3.95
619 828 8.967664 AACACTTAAAATACAGTACAACCAGA 57.032 30.769 0.00 0.00 0.00 3.86
623 832 9.048446 TCTGGAACACTTAAAATACAGTACAAC 57.952 33.333 0.00 0.00 0.00 3.32
651 882 6.695292 AATCGCAAAAGCAGTTAAAATGAG 57.305 33.333 0.00 0.00 0.00 2.90
654 885 7.412891 GGCAATAATCGCAAAAGCAGTTAAAAT 60.413 33.333 0.00 0.00 0.00 1.82
661 892 1.847999 CGGCAATAATCGCAAAAGCAG 59.152 47.619 0.00 0.00 0.00 4.24
690 921 0.748005 AAATGCAACCCCGATCTCCG 60.748 55.000 0.00 0.00 38.18 4.63
805 1036 7.394016 TGCTGAACAAAATAGATAGAGGTTGA 58.606 34.615 0.00 0.00 0.00 3.18
806 1037 7.615582 TGCTGAACAAAATAGATAGAGGTTG 57.384 36.000 0.00 0.00 0.00 3.77
807 1038 7.665559 TGTTGCTGAACAAAATAGATAGAGGTT 59.334 33.333 0.00 0.00 40.82 3.50
808 1039 7.168219 TGTTGCTGAACAAAATAGATAGAGGT 58.832 34.615 0.00 0.00 40.82 3.85
809 1040 7.615582 TGTTGCTGAACAAAATAGATAGAGG 57.384 36.000 0.00 0.00 40.82 3.69
810 1041 9.499585 CAATGTTGCTGAACAAAATAGATAGAG 57.500 33.333 0.00 0.00 45.23 2.43
811 1042 9.230122 TCAATGTTGCTGAACAAAATAGATAGA 57.770 29.630 0.00 0.00 45.23 1.98
812 1043 9.844790 TTCAATGTTGCTGAACAAAATAGATAG 57.155 29.630 0.00 0.00 45.23 2.08
814 1045 9.545105 TTTTCAATGTTGCTGAACAAAATAGAT 57.455 25.926 0.00 0.00 45.23 1.98
815 1046 8.939201 TTTTCAATGTTGCTGAACAAAATAGA 57.061 26.923 0.00 0.00 45.23 1.98
821 1052 9.755804 TGTATATTTTTCAATGTTGCTGAACAA 57.244 25.926 0.00 0.00 45.23 2.83
822 1053 9.409312 CTGTATATTTTTCAATGTTGCTGAACA 57.591 29.630 0.00 0.00 46.13 3.18
823 1054 8.375465 GCTGTATATTTTTCAATGTTGCTGAAC 58.625 33.333 0.00 0.00 32.61 3.18
824 1055 8.306038 AGCTGTATATTTTTCAATGTTGCTGAA 58.694 29.630 0.00 0.00 0.00 3.02
825 1056 7.756272 CAGCTGTATATTTTTCAATGTTGCTGA 59.244 33.333 5.25 0.00 42.61 4.26
826 1057 7.543172 ACAGCTGTATATTTTTCAATGTTGCTG 59.457 33.333 20.16 0.00 44.61 4.41
827 1058 7.543172 CACAGCTGTATATTTTTCAATGTTGCT 59.457 33.333 21.20 0.00 0.00 3.91
872 1103 8.950007 AGTTTGGAGAAATTATTAAAGTCCCA 57.050 30.769 0.00 0.00 0.00 4.37
896 1127 7.172190 CACTTCAATATCACCCTGCATAGTAAG 59.828 40.741 0.00 0.00 0.00 2.34
930 1169 3.910627 ACAAAAGGTAGAGGAGGTGTCAT 59.089 43.478 0.00 0.00 0.00 3.06
982 1221 7.664758 CCTTCCATTTTCTCAAAAAGATCACT 58.335 34.615 0.00 0.00 37.76 3.41
1143 1382 1.766494 CCCTGTTGATAGGCATTGCA 58.234 50.000 11.39 0.00 36.47 4.08
1172 1411 6.154363 TCCAAATTGAAATCCAGGGTTATCAC 59.846 38.462 0.00 0.00 0.00 3.06
1243 1509 2.224018 GCTCCTCATCACTGATGGAGTC 60.224 54.545 19.56 12.13 42.61 3.36
1701 1973 7.624360 ATTGACACGGTTGTTGTTATGATAT 57.376 32.000 0.00 0.00 35.47 1.63
1904 2176 6.086222 GCACGACACATTCTTTTATTCATGT 58.914 36.000 0.00 0.00 0.00 3.21
1925 2197 0.464373 ATCACCATGATCCACCGCAC 60.464 55.000 0.00 0.00 29.59 5.34
1995 2267 5.370875 TGATACCCAATGTGATGTCATGA 57.629 39.130 0.00 0.00 0.00 3.07
2012 2284 5.009010 CCACCTGGAATAGCATTGTTGATAC 59.991 44.000 0.00 0.00 37.39 2.24
2054 2326 0.319555 TGAAGTCAAGTCCTTCCGCG 60.320 55.000 0.00 0.00 38.00 6.46
2086 2358 2.357323 TGTGCAAGCGATGTTTCTGAAA 59.643 40.909 0.00 0.00 0.00 2.69
2106 2378 4.081697 ACTTCCAGTTTTTGTTCTTGGGTG 60.082 41.667 0.00 0.00 0.00 4.61
2226 2498 1.604278 AGCTGAAGTTCCAAACGCTTC 59.396 47.619 0.00 0.00 39.09 3.86
2525 2808 5.951747 CCCCTTAATGAACATCCTCAAAGAA 59.048 40.000 0.00 0.00 0.00 2.52
2691 2975 2.510906 CGAGGCCAGGGGTAATGG 59.489 66.667 5.01 0.00 41.04 3.16
2700 2984 1.078214 TCTTTGATGCCGAGGCCAG 60.078 57.895 12.05 0.00 41.09 4.85
2739 3023 8.276325 GGCTATATCTTCGAACAAATGTTGTAG 58.724 37.037 3.05 0.00 44.59 2.74
2750 3034 8.087982 TCATTGATTTGGCTATATCTTCGAAC 57.912 34.615 0.00 0.00 0.00 3.95
2786 3070 5.880332 GTGATTAAATTCTCAGTGTGGCCTA 59.120 40.000 3.32 0.00 0.00 3.93
2857 3141 5.410746 CACATAGCACAAGAACACTGAATCT 59.589 40.000 0.00 0.00 0.00 2.40
3018 3302 4.305769 TGCAATAGAACAAACAATGGCAC 58.694 39.130 0.00 0.00 0.00 5.01
3107 3392 0.667993 AGTGCCATGTGTTCAAACCG 59.332 50.000 0.00 0.00 0.00 4.44
3109 3394 1.000274 GGGAGTGCCATGTGTTCAAAC 60.000 52.381 0.00 0.00 35.15 2.93
3139 3424 7.993183 AGTAACAGACCAATTCACCTATTATGG 59.007 37.037 0.00 0.00 0.00 2.74
3140 3425 8.964476 AGTAACAGACCAATTCACCTATTATG 57.036 34.615 0.00 0.00 0.00 1.90
3143 3428 9.975218 AATAAGTAACAGACCAATTCACCTATT 57.025 29.630 0.00 0.00 0.00 1.73
3144 3429 9.396022 CAATAAGTAACAGACCAATTCACCTAT 57.604 33.333 0.00 0.00 0.00 2.57
3147 3432 6.151144 AGCAATAAGTAACAGACCAATTCACC 59.849 38.462 0.00 0.00 0.00 4.02
3174 3459 3.576118 TCTGTAGCATCTCTTCATAGCCC 59.424 47.826 0.00 0.00 0.00 5.19
3203 3536 3.684305 TGGTTATGCGAGAACATTGTCTG 59.316 43.478 0.00 0.00 0.00 3.51
3204 3537 3.935203 CTGGTTATGCGAGAACATTGTCT 59.065 43.478 0.00 0.00 0.00 3.41
3205 3538 3.684788 ACTGGTTATGCGAGAACATTGTC 59.315 43.478 0.00 0.00 0.00 3.18
3206 3539 3.674997 ACTGGTTATGCGAGAACATTGT 58.325 40.909 0.00 0.00 0.00 2.71
3269 3602 2.324541 CTGGTCTATCTCCCCTGGAAG 58.675 57.143 0.00 0.00 0.00 3.46
3272 3605 0.105246 AGCTGGTCTATCTCCCCTGG 60.105 60.000 0.00 0.00 0.00 4.45
3274 3607 0.639392 ACAGCTGGTCTATCTCCCCT 59.361 55.000 19.93 0.00 0.00 4.79
3275 3608 1.044611 GACAGCTGGTCTATCTCCCC 58.955 60.000 19.93 0.00 43.46 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.